Group: Bioinformatics - CRUK - library 71 articles Export

	CMA - A comprehensive Bioconductor package for supervised classification with high dimensional data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Martin Slawski, Martin Daumer, Anne L. Boulesteix posted to classifiers bioconductor by Stew to the group Bioinformatics - CRUK on 2009-10-13 16:15:51 as along with 9 people anf jfr akastrin rdiaz nuin guhjy druvus pengchy GeeSharpMinor
	Next-generation tag sequencing for cancer gene expression profiling [My Copy] Genome Research, Vol. 19, No. 10. (10 October 2009), pp. 1825-1835. by A. Sorana Morrissy, Ryan D. Morin, Allen Delaney, et al.Thomas Zeng, Helen McDonald, Steven Jones, Yongjun Zhao, Martin Hirst, Marco A. Marra posted to tag solexa profiling illumina gene expression by Stew to the group Bioinformatics - CRUK on 2009-10-08 14:18:17 as along with 3 people torfinnnome guhjy fpattyn
	A common sequence motif associated with recombination hot spots and genome instability in humans. [My Copy] Nature genetics, Vol. 40, No. 9. (September 2008), pp. 1124-1129. by Simon Myers, Colin Freeman, Adam Auton, Peter Donnelly, Gil McVean posted to recombination pwm prdm6 motif insability human hot_spot genome by Stew to the group Bioinformatics - CRUK on 2009-10-02 10:53:55 as along with 1 person bpcusack
	Relative power and sample size analysis on gene expression profiling data [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 439. by M. van Iterson, P. A. C. 'T Hoen, P. Pedotti, et al.G. J. E. J. Hooiveld, J. T. den Dunnen, G. J. B. van Ommen, J. M. Boer, R. X. Menezes posted to size sample profiling power gene expression calculations by Stew to the group Bioinformatics - CRUK on 2009-09-30 21:21:22 as along with 5 people dswan fenghezi mkiyer rdiaz barriot
	Why Most Published Research Findings Are False [My Copy] PLoS Med, Vol. 2, No. 8. (30 August 2005), e124. by John P. A. Ioannidis posted to research_findings false by Stew to the group Bioinformatics - CRUK on 2009-09-24 13:39:52 as along with 86 people and 11 groups rubenroa aaltenburger lafuente alexhakkinen NIlz polivares yyfwuhan zzb3886 amargoli CulCog jenniferwilms eshirdel ckai1 monkare scmelton LSK thegoose johntdelaney virolog olberd robertlischke cobi flieder arsyed mrt2k9 schoeband steve3001 paleorthid pawelsobko mzkbnt memming mutesa donnachie apgaylard haloin bhengeveld yangjustinc jago Tomste richardh daforerog kristinchapman FeltonM7675 pengchy ajaymalik gbodner neteler mixedman Zephyrus rklancer guhjy sebpaquet garyfeng monod Borelli jmeppley chad_davis Najamuddin irinas indigoviolet mwyarbro ddahlem dullhunk madhadron balabu jiyu msierk Imat lmi_swap chenlc03 biblio24 pratap kevinemamy cjeans feipan arne suizan jasonbobe austin lonettma buggle dnugent Malc elsbury shoshin achinerarias raftlondon STS Method_Engineering_Services Convention on Knowledge Commons Anesthesia and Acute Pain UCD SILS IS40340 Research Practice Roswell Cancer Crosstalk ReadingLab EisenLab Sciences_communication_societe dIEMoSIRIS
	A Quick Guide to Teaching R Programming to Computational Biology Students [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000482. by Stephen J. Eglen posted to teaching r programming computational biology by Stew to the group Bioinformatics - CRUK on 2009-09-24 09:25:34 as along with 61 people and 3 groups kaliczp maren sobolevnrm ltitodem zchen75 artaban421 natstreet jasonn tomhebbron psique eshirdel guhjy polivares ajw fishtank diamantis fastjoe23 kshameer daveGerrard hrogers JoeBanks cisevol srijit hwright Ayest VGreiff welliegirl asadrahman rdiaz ptrobajo heliopais coffeerv Vincent_Rouilly marekrud tnhh barry ansobol Zephyrus walshtp bertelsen fgibson pkonings Borelli klauso dlizcano dswan skembel djkt jclau lwaldron phoenixzxl timhubbard AJCann thegoose dullhunk brianb neils silberbauer daforerog ppgardne druvus BergmanLab eLearning in Leicester Journal picks
	The Origins of Lactase Persistence in Europe [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000491. by Yuval Itan, Adam Powell, Mark A. Beaumont, Joachim Burger, Mark G. Thomas posted to lactose intolerance by Stew to the group Bioinformatics - CRUK on 2009-09-24 09:21:49 as along with 6 people and 1 group djkt ggrassi neils ppgardne druvus zentrification Journal picks
	Direct RNA sequencing [My Copy] Nature, Vol. 461, No. 7265. (23 September 2009), pp. 814-818. by Fatih Ozsolak, Adam R. Platt, Dan R. Jones, et al.Jeffrey G. Reifenberger, Lauryn E. Sass, Peter McInerney, John F. Thompson, Jayson Bowers, Mirna Jarosz, Patrice M. Milos posted to sequencing rna bias by gdb to the group Bioinformatics - CRUK on 2009-09-24 09:16:20 as along with 18 people and 1 group gotgenes jwfoley GeeSharpMinor mlc39 colinveal reyez TRHvidsten djkt ppgardne dchughes heliopais vingron nzm n00c lp2 toni_marco dswan kinestetika Journal picks
	Comparative study on ChIP-seq data: normalization and binding pattern characterization [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2334-2340. by Cenny Taslim, Jiejun Wu, Pearlly Yan, et al.Greg Singer, Jeffrey Parvin, Tim Huang, Shili Lin, Kun Huang posted to normalization comparison chip-seq chip by Stew to the group Bioinformatics - CRUK on 2009-09-24 09:02:01 as along with 8 people and 1 group tonamswish stubrown inesdesantiago ewilban1 guhjy mkiyer humburg rschulz Chinnaiyan Lab
	RankAggreg, an R package for weighted rank aggregation [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 62. by Vasyl Pihur, Susmita Datta, Somnath Datta posted to no-tag by slv23 to the group Bioinformatics - CRUK on 2009-09-16 10:06:06 as along with 7 people daforerog rdiaz trfield provero shikin guhjy mdharsee
	puma: a Bioconductor package for propagating uncertainty in microarray analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 211. by Richard Pearson, Xuejun Liu, Guido Sanguinetti, Marta Milo, Neil Lawrence, Magnus Rattray posted to uncertainty puma propogation microarray illumina bioconductor analysis by Stew to the group Bioinformatics - CRUK on 2009-08-14 11:47:54 as along with 8 people zufar rdiaz bertelsen guhjy lwaldron brianb barriot neils
	Genome-wide promoter analysis of the SOX4 transcriptional network in prostate cancer cells. [My Copy] Cancer research, Vol. 69, No. 2. (15 January 2009), pp. 709-717. by Christopher D. Scharer, Colleen D. McCabe, Mohamed Ali-Seyed, Michael F. Berger, Martha L. Bulyk, Carlos S. Moreno posted to cancer david finding motif network prostate sox4 transcription by Stew to the group Bioinformatics - CRUK on 2009-08-10 11:56:34 as along with 1 person nklee
	Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data. [My Copy] BMC bioinformatics, Vol. 7 (2006) by Bertrand R. Huber, Martha L. Bulyk posted to analysis finding mammals meta motif by Stew to the group Bioinformatics - CRUK on 2009-08-10 10:19:58 as along with 4 people and 1 group bryankr indigoviolet gpalidwor nklee EisenLab
	A Quick Guide to Organizing Computational Biology Projects [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000424. by William S. Noble posted to bioinformatics biology computational guide organizing by Stew to the group Bioinformatics - CRUK on 2009-08-05 11:26:23 as along with 52 people and 6 groups Yanno aaltenburger marekrud guhjy dolchan frohike operon CorinYeats artaban421 antonkratz tomhebbron maren bayesian daveGerrard JoeBanks jcaddy somak bertelsen ptrobajo nperoni daforerog mmwoodman charris5 GustavoLacerda pmendes fgibson rdiaz Zephyrus heliopais franklu310 lmichan silberbauer leemond31 jlangdon robfsouza pmung reyez kshameer djkt pawelsobko jjray dswan apaydin renatomilani VGreiff cabbagesofdoom wei_tang fenghezi cisevol barry sdaehne druvus Pedro Martinez EvoDevo lab Barcelona Orengo Group Journal Picks ccsbs BergmanLab structural_bioinformatics McCammon
	FGFR2 variants and breast cancer risk: fine-scale mapping using African American studies and analysis of chromatin conformation. [My Copy] Human molecular genetics, Vol. 18, No. 9. (1 May 2009), pp. 1692-1703. by M. S. Udler, K. B. Meyer, K. A. Pooley, et al.E. Karlins, J. P. Struewing, J. Zhang, D. R. Doody, S. MacArthur, J. Tyrer, P. D. Pharoah, R. Luben, L. Bernstein, L. N. Kolonel, B. E. Henderson, L. Le Marchand, G. Ursin, M. F. Press, P. Brennan, S. Sangrajrang, V. Gaborieau, F. Odefrey, C. Y. Shen, P. E. Wu, H. C. Wang, D. Kang, K. Y. Yoo, D. Y. Noh, S. H. Ahn, B. A. Ponder, C. A. Haiman, K. E. Malone, A. M. Dunning, E. A. Ostrander, D. F. Easton, posted to breast cancer chromatin dnase hyersensitivity by Stew to the group Bioinformatics - CRUK on 2009-07-23 16:45:38 as along with 1 person songpku
	Genome-wide analysis of alternative pre-mRNA splicing and RNA-binding specificities of the Drosophila hnRNP A/B family members. [My Copy] Molecular cell, Vol. 33, No. 4. (27 February 2009), pp. 438-449. by M. Blanchette, R. E. Green, S. MacArthur, et al.A. N. Brooks, S. E. Brenner, M. B. Eisen, D. C. Rio posted to binding drosophila hnrnp mrna rna by Stew to the group Bioinformatics - CRUK on 2009-07-23 16:44:29 as
	Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions [My Copy] Genome Biology, Vol. 10, No. 7. (23 July 2009), R80. by Stewart MacArthur, Xiao Y. Li, Jingyi Li, et al.James Brown, Hou C. Chu, Lucy Zeng, Brandi Grondona, Aaron Hechmer, Lisa Simirenko, Soile Keranen, David Knowles, Mark Stapleton, Peter Bickel, Mark Biggin, Michael Eisen posted to chip chip-chip development drosophila factor genome transcription by Stew to the group Bioinformatics - CRUK on 2009-07-23 16:41:46 as along with 11 people and 1 group venancio aalibes fenghezi idonaldson daveGerrard megraw scjparker maximilianh djkt isimpson druvus BergmanLab
	An introduction to scripting in Ruby for biologists. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 221. by Jan Aerts, Andy Law posted to biologists introduction programming ruby script scripting by Stew to the group Bioinformatics - CRUK on 2009-07-22 09:47:30 as along with 25 people and 2 groups isimpson kshameer n00c Zephyrus nuin sobolevnrm jago lwaldron apaydin natstreet silberbauer mfenner phoenixzxl renatomilani abhishek_tiwari rschulz sjcockell dullhunk druvus neils daforerog fgibson leemond31 brianb dswan Journal picks Bioinformatics
	DIANA-mirPath: Integrating human and mouse microRNAs in pathways. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 15. (1 August 2009), pp. 1991-1993. by G. L. Papadopoulos, P. Alexiou, M. Maragkakis, M. Reczko, A. G. Hatzigeorgiou posted to human microrna mouse pathway by Stew to the group Bioinformatics - CRUK on 2009-07-22 09:41:19 as along with 7 people and 1 group ealloza megraw dswan daforerog tmmurali guhjy pengchy Bioinformatics
	SOAP2: an improved ultrafast tool for short read alignment [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1966-1967. by Ruiqiang Li, Chang Yu, Yingrui Li, et al.Tak-Wah Lam, Siu-Ming Yiu, Karsten Kristiansen, Jun Wang posted to alignment read reads short soap2 by Stew to the group Bioinformatics - CRUK on 2009-07-22 09:37:57 as along with 25 people and 5 groups agbiotec torfinnnome natstreet cthachuk jforment GustavoLacerda adijr bozdagd stubrown polivares guhjy ollieredfernwork operon cassj adamjamesreid jamselem dswan idonaldson TRHvidsten humburg djkt farhat n00c jmeppley druvus Bioinformatics Core Service BergmanLab Orengo Group Journal Picks Bioinformatics Journal picks
	RJaCGH: Bayesian analysis of aCGH arrays for detecting copy number changes and recurrent regions [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1959-1960. by Oscar M. Rueda, Ramon Diaz-Uriarte posted to acgh analysis cgh copy copy-number number rjacgh by Stew to the group Bioinformatics - CRUK on 2009-07-22 09:36:17 as along with 2 people rdiaz nuin
	Importance of randomization in microarray experimental designs with Illumina platforms. [My Copy] Nucleic acids research, Vol. 37, No. 17. (1 September 2009), pp. 5610-5618. by Ricardo A. Verdugo, Christian F. Deschepper, Gloria Muñoz, Daniel Pomp, Gary A. Churchill posted to design experimental illumina microarray randomization by Stew to the group Bioinformatics - CRUK on 2009-07-21 11:02:30 as along with 3 people and 1 group davidalee yaredo rdiaz Orengo Group Journal Picks
	Ten Simple Rules for Choosing between Industry and Academia [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (26 June 2009), e1000388. by David B. Searls posted to bioinformatics core by Stew to the group Bioinformatics - CRUK on 2009-07-14 16:32:25 as along with 31 people and 2 groups aaltenburger Zephyrus CulCog thegoose Yanno timflutre tnhh PeteField MarcoAlvarez sobolevnrm dbikard jasontsai casutton franklu310 kieran101 chrisamiller rdiaz daveGerrard reyez neils marekrud Borelli psique kshameer gjuggler sdaehne flips ppgardne fgibson barry dullhunk Journal picks McCammon
	A novel and universal method for microRNA RT-qPCR data normalization. [My Copy] Genome biology, Vol. 10, No. 6. (16 June 2009), R64. by Pieter Mestdagh, Pieter Van Vlierberghe, An De Weer, et al.Daniel Muth, Frank Westermann, Frank Speleman, Jo Vandesompele posted to array microrna normalization qtpcr by Stew to the group Bioinformatics - CRUK on 2009-06-18 11:40:52 as along with 9 people daforerog fishtank megraw guhjy gdb mlog lwaldron valeriehilgers druvus
	Assessing phylogenetic motif models for predicting transcription factor binding sites [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i339-347. by John Hawkins, Charles Grant, William S. Noble, Timothy L. Bailey posted to binding binding-sites factor motif phylogen prediction tfbs transcription by Stew to the group Bioinformatics - CRUK on 2009-06-17 15:29:28 as along with 8 people and 2 groups dquest marti Lombardo_7 megraw operon nuin AlexBateman scjparker EisenLab Journal picks
	DISCOVER: a feature-based discriminative method for motif search in complex genomes. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. i321-329. by Wenjie Fu, Pradipta Ray, Eric P. Xing posted to complex discovery genomes motif tfbs by Stew to the group Bioinformatics - CRUK on 2009-06-17 15:21:34 as along with 5 people guhjy dquest idonaldson thegoose maximilianh
	Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 523. by David Nix, Samir Courdy, Kenneth Boucher posted to no-tag by slv23 to the group Bioinformatics - CRUK on 2009-06-08 12:57:24 as along with 9 people and 1 group darian gdb inesdesantiago ewilban1 floatingpoint WanderingAengus magusina ghattem caseybrown SIMR bioinformatics
	Translating statistical findings into plain English. [My Copy] Lancet, Vol. 373, No. 9679. (6 June 2009), pp. 1926-1928. by Stuart J. Pocock, James H. Ware posted to clinical findings stats study trials by slv23 to the group Bioinformatics - CRUK on 2009-06-08 07:46:26 as along with 2 people sramko guhjy
	SHRiMP: Accurate Mapping of Short Color-space Reads [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000386. by Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno posted to mapping reads short solexa by Stew to the group Bioinformatics - CRUK on 2009-05-26 13:07:59 as along with 18 people and 3 groups bozdagd ilanc burak guhjy djkt trfield n00c natstreet adijr druvus farhat humburg kshameer operon stajich GeeSharpMinor AlexBateman barry Mycology Journal picks Bioinformatics
	Quality assessment and data analysis for microRNA expression arrays. [My Copy] Nucleic acids research, Vol. 37, No. 2. (1 February 2009), e17. by D. Sarkar, R. Parkin, S. Wyman, et al.A. Bendoraite, C. Sather, J. Delrow, A. K. Godwin, C. Drescher, W. Huber, R. Gentleman, M. Tewari posted to comparative expression microarray microrna normalization by Stew to the group Bioinformatics - CRUK on 2009-05-26 10:55:55 as along with 6 people and 1 group jfr nuin ptrobajo baldigroup guhjy giovenko microRNA
	Strategies for profiling microRNA expression. [My Copy] Journal of cellular physiology, Vol. 218, No. 1. (January 2009), pp. 22-25. by William Kong, Jian-Jun J. Zhao, Lili He, Jin Q. Cheng posted to expression microrna profiling by Stew to the group Bioinformatics - CRUK on 2009-05-26 09:52:41 as along with 2 people natstreet guhjy
	A comparison of normalization techniques for microRNA microarray data. [My Copy] Statistical applications in genetics and molecular biology, Vol. 7, No. 1. (2008) by Youlan Rao, Yoonkyung Lee, David Jarjoura, et al.Amy S. Ruppert, Chang-Gong G. Liu, Jason C. Hsu, John P. Hagan posted to comparative microarray microrna normalization review by Stew to the group Bioinformatics - CRUK on 2009-05-26 09:48:42 as along with 3 people meanerelk gdb jfr
	How to map billions of short reads onto genomes [My Copy] Nature Biotechnology, Vol. 27, No. 5. (01 May 2009), pp. 455-457. by Cole Trapnell, Steven L. Salzberg posted to bowtie genomes mapping maq reads short by Stew to the group Bioinformatics - CRUK on 2009-05-13 12:30:06 as along with 25 people and 4 groups heliopais giovenko jfr torfinnnome daforerog jonilaserson mkiyer Annab darian polivares ghattem kiekyon n00c GeeSharpMinor guhjy nuin reyez orzenil Thaverkamp natstreet druvus fenghezi inesdesantiago idonaldson neils Bioinformatics Chinnaiyan Lab BergmanLab SIMR bioinformatics
	Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data. [My Copy] BMC genomics, Vol. 10, No. 1. (2009), 218. by Yu-Ping P. Wang, Kuo-Bin B. Li posted to correlation expression microrna mrna prediction profiling target by Stew to the group Bioinformatics - CRUK on 2009-05-12 15:13:14 as along with 10 people guhjy giovenko marti lwaldron daforerog samgj shikin ealloza dswan natstreet
	Network Analysis Tools: from biological networks to clusters and pathways [My Copy] Nature Protocols, Vol. 3, No. 10. (18 September 2008), pp. 1616-1629. by Sylvain Brohee, Karoline Faust, Gipsi Lima-Mendez, Gilles Vanderstocken, Jacques van Helden posted to analysis network pathway by Stew to the group Bioinformatics - CRUK on 2009-05-12 15:08:08 as along with 9 people carlk mingzhi daforerog pauldobson Zephyrus natstreet guhjy druvus dullhunk
	Identification and target prediction of miRNAs specifically expressed in rat neural tissue [My Copy] BMC Genomics, Vol. 10 (09 May 2009), 214. by You-Jia, Hua-Sheng Xiao posted to microrna neural prediction rat target by Stew to the group Bioinformatics - CRUK on 2009-05-11 09:43:05 as along with 3 people shikin daforerog samgj
	microRNA target predictions in animals [My Copy] Nature Genetics, Vol. 38 Suppl 1, No. 6s. (30 May 2006), pp. S8-S13. by Nikolaus Rajewsky posted to animals microrna prediction target by Stew to the group Bioinformatics - CRUK on 2009-04-28 14:46:03 as along with 12 people and 4 groups danaiancu thegoose jfr marcius balicea andersbj mtagaya chenlc03 Garamonfok physics heliopais maralena Bioinformatics microRNA BioinfoCIPF SGU-CIPF
	ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1091-1093. by G. Bindea, B. Mlecnik, H. Hackl, et al.P. Charoentong, M. Tosolini, A. Kirilovsky, W. H. Fridman, F. Pagès, Z. Trajanoski, J. Galon posted to analysis cytoscape go network pathway plugin by Stew to the group Bioinformatics - CRUK on 2009-04-14 15:18:26 as along with 9 people jfr robert85 guhjy natstreet sjcockell dswan idonaldson tosolini thomaskelder
	CoCAS: a ChIP-on-chip analysis suite. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 954-955. by Touati Benoukraf, Pierre Cauchy, Romain Fenouil, et al.Adrien Jeanniard, Frederic Koch, Sébastien Jaeger, Denis Thieffry, Jean Imbert, Jean-Christophe C. Andrau, Salvatore Spicuglia, Pierre Ferrier posted to analysis chip-chip standalone by Stew to the group Bioinformatics - CRUK on 2009-03-26 07:17:42 as along with 6 people Eduvernois guhjy jfr dswan siebert sebastien_vigneau
	Integrated analysis of breast cancer cell lines reveals unique signaling pathways [My Copy] Genome Biology, Vol. 10 (25 March 2009), R31. by Laura, Paul T. Spellman posted to breast cancer cell lines network pathway signaling by Stew to the group Bioinformatics - CRUK on 2009-03-25 16:17:10 as along with 3 people jfr thegoose shikin
	CORNA: testing gene lists for regulation by microRNAs [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 832-833. by X. Wu, M. Watson posted to enrichment microrna regulation by Stew to the group Bioinformatics - CRUK on 2009-03-24 10:02:41 as along with 10 people and 1 group VR lwaldron jfr guhjy djkt nuin imina natstreet druvus mhamada microRNA
	Impact of normalization on miRNA microarray expression profiling [My Copy] RNA, Vol. 15, No. 3. (28 March 2009), pp. 493-501. by Sylvain Pradervand, Johann Weber, JÃ©rÃ´me Thomas, et al.Manuel Bueno, Pratyaksha Wirapati, Karine Lefort, G. Paolo Dotto, Keith Harshman posted to expression microrna mirna normalization by Stew to the group Bioinformatics - CRUK on 2009-03-24 10:01:05 as along with 5 people and 1 group heliopais tonamswish guhjy ealloza daforerog microRNA
	WGCNA: an R package for weighted correlation network analysis. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by P. Langfelder, S. Horvath posted to no-tag by slv23 to the group Bioinformatics - CRUK on 2009-03-19 13:14:20 as along with 14 people and 1 group daforerog sficklin lwaldron jfr ekotelnikova rdiaz guhjy natstreet druvus cswinburne lptolik jmeppley irinamohorianu pengchy Bioinformatics
	Statistical methods of background correction for Illumina BeadArray data [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 751-757. by Yang Xie, Xinlei Wang, Michael Story posted to background beadarray correction illumina by Stew to the group Bioinformatics - CRUK on 2009-03-17 12:50:51 as along with 7 people jfr ptrobajo welliegirl rdiaz heliopais dswan guhjy
	BioMart--biological queries made easy. [My Copy] BMC genomics, Vol. 10, No. 1. (2009), 22. by Damian Smedley, Syed Haider, Benoit Ballester, et al.Richard Holland, Darin London, Gudmundur Thorisson, Arek Kasprzyk posted to biomart data mining by Stew to the group Bioinformatics - CRUK on 2009-03-11 14:14:16 as along with 29 people and 3 groups aaltenburger artaban421 sjcockell lmichan jdbowes fgibson pekrau gangcai daforerog jfr fisherp allysonlister grahamc dswan Zephyrus renatomilani guhjy natstreet pablocarb Cortel dbk mitko brianb ajaymalik neils kshameer dullhunk druvus cisevol Bioinformatics Roswell Cancer Crosstalk BergmanLab
	Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists [My Copy] Nucl. Acids Res., Vol. 37, No. 1. (1 January 2009), pp. 1-13. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted to analysis bioinformatics enrichment functional gene lists by Stew to the group Bioinformatics - CRUK on 2009-03-11 11:07:19 as along with 41 people and 1 group ipark-kaist giovenko lwaldron jcaddy antonkratz Zephyrus shikin yaredo tonamswish ddunbar robfsouza Keywan daforerog ptrobajo rdiaz bertelsen inesdesantiago heliopais AlexanderPico aviad_work ekotelnikova frohike aramesh2 jfr zufar ilyashl dolchan paszkows lptolik thomaskelder AbnerCYH neils tmmurali ealloza barriot druvus renatomilani pengchy phoenixzxl guhjy sjcockell ConklinLab
	Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. [My Copy] Nature protocols, Vol. 4, No. 1. (18 December 2009), pp. 44-57. by Da Wei a. . W. Huang, Brad T. Sherman, Richard A. Lempicki posted to analysis david enrichment functional gene go by Stew to the group Bioinformatics - CRUK on 2009-03-11 10:06:44 as along with 15 people and 1 group rschulz jperkins tonamswish operon VGreiff jfr bertelsen Sonix dswan guhjy wimufi brianb idonaldson mrochman daforerog Bioinformatics
	Understanding Transcriptional Regulation Using De-novo Sequence Motif Discovery, Network Inference and Interactome Data [My Copy] ArXiv e-prints (October 2007) by A. Rao, A. O. Hero, D. J. States, J. D. Engel posted to no-tag by Stew to the group Bioinformatics - CRUK on 2009-03-08 23:20:59 as
	Locating mammalian transcription factor binding sites: A survey of computational and experimental techniques [My Copy] Genome Research, Vol. 16, No. 12. (19 December 2006), pp. 1455-1464. by Laura Elnitski, Victor X. Jin, Peggy J. Farnham, Steven J. M. Jones posted to binding-sites discovery factor prediction review transcription by Stew to the group Bioinformatics - CRUK on 2009-03-08 22:47:05 as along with 11 people and 1 group matted gdb wowalz heliopais dquest bryankr giovanni lusk SeungjoonOh cabbagezs maximilianh GeschwindLab
	Pseudocounts for transcription factor binding sites. [My Copy] Nucleic acids research, Vol. 37, No. 3. (23 February 2009), pp. 939-944. by Keishin Nishida, Martin C. Frith, Kenta Nakai posted to binding-sites factor pseudocounts transcription by Stew to the group Bioinformatics - CRUK on 2009-03-08 22:35:26 as along with 4 people lusk jkim63 fpattyn nuin

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microrna	14
microarray	11
analysis	10
expression	9
motif	8
gene	6
normalization	6
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review	6
discovery	5
dnase	5
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factor	4
finding	4
genome	4
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array	3
binding	3
binding-sites	3
bioinformatics	3
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de-novo	3
dnase-chip	3
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mammals	3
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mrna	3
reads	3
short	3
bioconductor	2
biology	2
chip	2
comparative	2
computational	2
david	2
design	2
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drosophila	2
experimental	2
genomes	2
go	2
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programming	2
rna	2
sample	2
sequencing	2
size	2
solexa	2
tfbs	2
acgh	1
algorithm	1
alignment	1
animals	1
annotation	1
background	1
bayes	1
beadarray	1
bias	1
biologists	1
biomart	1
bowtie	1
calculations	1
cell	1
cgh	1
chip-seq	1
chromatin	1
cis-regulatory	1
classifiers	1
clinical	1
comparison	1
complex	1
conserved	1
copy	1
copy-number	1
core	1
correction	1
correlation	1
cytoscape	1
data	1
development	1
differentially	1
ebayes	1
empirical	1
events	1
expressed	1
false	1
findings	1
genomics	1
gsea	1
guide	1
haplotype	1
high-throughput	1
hnrnp	1
hot_spot	1
hyersensitivity	1
insability	1
intolerance	1
introduction	1
kegg	1
lactose	1
limma	1
linear	1
lines	1
lists	1
maq	1
meta	1
metabolic	1
mining	1
model	1
models	1
motifs	1
mouse	1
neural	1
number	1
ontology	1
organizing	1
peak	1
phylogen	1
plugin	1
polymerase	1
power	1
prdm6	1
propogation	1
prostate	1
pseudocounts	1
puma	1
pwm	1
qtpcr	1
r	1
randomization	1
rat	1
read	1
recombination	1
regulation	1
research_findings	1
rjacgh	1
ruby	1
script	1
scripting	1
signaling	1
significance	1
soap2	1
sox4	1
standalone	1
stats	1
stormo	1
students	1
study	1
tag	1
teaching	1
trials	1
tumour	1
uncertainty	1
variation	1

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