Group: Structural Biology Group TorVergata - with tag dna [44 articles] Export

Recent papers posted by members of the Structural Biology Group TorVergata group with tag dna

	Extended Weak Bonding Interactions in DNA: π-Stacking (Base−Base), Base−Backbone, and Backbone−Backbone Interactions† [My Copy] The Journal of Physical Chemistry B, Vol. 110, No. 1. (1 January 2006), pp. 563-578. by Cherif F. Matta, Norberto Castillo, Russell J. Boyd posted to dna dft ab-initio by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-10-30 23:50:42 as
	Chapter 4 Modeling Protein–Protein and Protein–Nucleic Acid Interactions: Structure, Thermodynamics, and Kinetics [My Copy] Annual Reports in Computational Chemistry, Vol. 4 (2008), pp. 67-87. by H. Zhou, S. Qin, H. Tjong posted to protein molecular_dynamics modeling dna by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-10-06 11:31:19 as along with 1 person and 1 group sobolevnrm baker-group
	A single mutation in the 729 residue modulates human DNA topoisomerase IB DNA binding and drug resistance [My Copy] Nucl. Acids Res., Vol. 36, No. 17. (1 October 2008), pp. 5635-5644. by Carmen Losasso, Erica Cretaio, Paola Fiorani, Ilda D'Annessa, Giovanni Chillemi, Piero Benedetti posted to topoisomerase mutants inhibitors dna by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-09-28 09:50:50 as along with 1 person moonycinzia
	Interplay of DNA supercoiling and catenation during the segregation of sister duplexes [My Copy] Nucl. Acids Res., Vol. 37, No. 15. (1 August 2009), pp. 5126-5137. by Maria L. Martinez-Robles, Guillaume Witz, Pablo Hernandez, Jorge B. Schvartzman, Andrzej Stasiak, Dora B. Krimer posted to molecular_dynamics dna coarse_grained by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-09-20 12:07:08 as
	Mutational analysis of the preferential binding of human topoisomerase I to supercoiled DNA [My Copy] FEBS Journal, Vol. 9999, No. 9999. (2009) by Zheng Yang, James F. Carey, James J. Champoux posted to topoisomerase supercoiled_dna dna_binding dna by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-09-15 13:55:46 as
	Docking Studies on DNA-Ligand Interactions: Building and Application of a Protocol To Identify the Binding Mode [My Copy] Journal of Chemical Information and Modeling, Vol. 49, No. 8. (24 August 2009), pp. 1925-1935. by Clarisse G. Ricci, Paulo A. Netz posted to molecular_dynamics docking dna by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-09-15 12:06:49 as
	Supercoiling and denaturation of DNA loops. [My Copy] Physical review letters, Vol. 100, No. 23. (13 June 2008) by T. B. Liverpool, S. A. Harris, C. A. Laughton posted to dna by oteri to the group Structural Biology Group TorVergata on 2009-09-14 16:36:03 as
	Conformational analysis of nucleic acids revisited: Curves+ [My Copy] Nucl. Acids Res. (22 July 2009), gkp608. by R. Lavery, M. Moakher, J. H. Maddocks, D. Petkeviciute, K. Zakrzewska posted to dna by oteri to the group Structural Biology Group TorVergata on 2009-09-14 15:29:06 as
	Binding of Topotecan to a Nicked DNA Oligomer in Solution [My Copy] Chemistry - A European Journal, Vol. 14, No. 9. (2008), pp. 2788-2794. by W. Bocian, R. Kaw&eogon;cki, E. Bednarek, et al.J. Sitkowski, M. P. Williamson, P. E. Hansen, L. Kozerski posted to topotecan nmr dna_oligomer dna by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-09-14 12:00:26 as
	Vaccinia DNA Topoisomerase I: Evidence Supporting a Free Rotation Mechanism for DNA Supercoil Relaxation† [My Copy] Biochemistry, Vol. 36, No. 17. (1 April 1997), pp. 5212-5222. by James T. Stivers, Thomas K. Harris, Albert S. Mildvan posted to vaccinia topoisomerase dna by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-09-11 10:10:49 as
	DNA basepair step deformability inferred from molecular dynamics simulations. [My Copy] Biophysical journal, Vol. 85, No. 5. (1 November 2003), pp. 2872-2883. by Filip Lankas, Jirí Sponer, Jörg Langowski, Thomas E. Cheatham posted to dna by oteri to the group Structural Biology Group TorVergata on 2009-09-10 19:44:59 as along with 3 people Elena_Zubova ruvido onufriev
	Geometrical and Electronic Structure Variability of the Sugar−phosphate Backbone in Nucleic Acids [My Copy] The Journal of Physical Chemistry B, Vol. 112, No. 27. (1 July 2008), pp. 8188-8197. by Daniel Svozil, Judit E. Šponer, Ivan Marchan, et al.Alberto Pérez, Thomas E. Cheatham, F. Forti, F. Javier Luque, Modesto Orozco, Jiří Šponer posted to dna by oteri to the group Structural Biology Group TorVergata on 2009-09-10 19:33:52 as along with 1 person middledomain
	Thermodynamics of base pairing. [My Copy] Current opinion in structural biology, Vol. 6, No. 3. (June 1996), pp. 299-304. by D. H. Turner posted to dna by oteri to the group Structural Biology Group TorVergata on 2009-06-24 15:37:51 as along with 1 person lenov
	Stability of DNA duplexes with Watson-Crick base pairs: a predicted model. [My Copy] Biochemistry, Vol. 43, No. 51. (28 December 2004), pp. 16467-16476. by M. Sundaralingam, P. K. Ponnuswamy posted to dna by oteri to the group Structural Biology Group TorVergata on 2009-06-24 15:36:10 as
	The Pathway of Oligomeric DNA Melting Investigated by Molecular Dynamics Simulations☆ [My Copy] Biophysical Journal, Vol. 95, No. 12. (15 December 2008), pp. 5618-5626. by Ka-Yiu Wong, Montgomery B. Pettitt posted to dna molecular_dynamics by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-06-17 14:36:12 as along with 1 person Vincent_Rouilly
	THE MATHEMATICS OF DNA STRUCTURE, MECHANICS, AND DYNAMICS [My Copy] posted to dna by oteri to the group Structural Biology Group TorVergata on 2009-06-15 13:47:32 as
	Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. I. Research Design and Results on d(CpG) Steps [My Copy] Vol. 87, No. 6. (1 December 2004), pp. 3799-3813. by David L. Beveridge, Gabriela Barreiro, Suzie, et al.David A. Case, Thomas E. Cheatham, Surjit B. Dixit, Emmanuel Giudice, Filip Lankas, Richard Lavery, John H. Maddocks, Roman Osman, Eleanore Seibert, Heinz Sklenar, Gautier Stoll, Kelly M. Thayer, Péter Varnai, Matthew A. Young posted to dna by oteri to the group Structural Biology Group TorVergata on 2009-06-12 16:18:15 as
	3D-DART: a DNA structure modelling server [My Copy] Nucl. Acids Res. (5 May 2009), gkp287. by Marc van Dijk, Alexandre M. Bonvin posted to dna by oteri to the group Structural Biology Group TorVergata on 2009-06-12 13:44:17 as
	Quantification of DNA BI/BII Backbone States in Solution. Implications for DNA Overall Structure and Recognition [My Copy] Journal of the American Chemical Society, Vol. 128, No. 28. (1 July 2006), pp. 9170-9177. by Brahim Heddi, Nicolas Foloppe, Nadia Bouchemal, Edith Hantz, Brigitte Hartmann posted to dna by oteri to the group Structural Biology Group TorVergata on 2009-06-10 15:35:54 as
	alpha/gamma Transitions in the B-DNA backbone [My Copy] Nucl. Acids Res., Vol. 30, No. 24. (15 December 2002), pp. 5398-5406. by Peter Varnai, Dragana Djuranovic, Richard Lavery, Brigitte Hartmann posted to dna by oteri to the group Structural Biology Group TorVergata on 2009-06-08 21:31:34 as along with 1 person Elena_Zubova
	UNIQUIMER 3D, a software system for structural DNA nanotechnology design, analysis and evaluation [My Copy] Nucl. Acids Res. (18 February 2009), gkp005. by Jinhao Zhu, Bryan Wei, Yuan Yuan, Yongli Mi posted to dna programmi by oteri to the group Structural Biology Group TorVergata on 2009-05-27 15:22:22 as
	Kinking Occurs during Molecular Dynamics Simulations of Small DNA Minicircles [My Copy] Structure, Vol. 14, No. 10. (October 2006), pp. 1527-1534. by Filip Lankas, Richard Lavery, John H. Maddocks posted to dna by oteri to the group Structural Biology Group TorVergata on 2009-04-03 17:47:26 as along with 1 person onufriev
	Synthesis and RNA Binding Selectivity of Oligonucleotides Modified with Five-Atom Thioacetamido Nucleic Acid Backbone Structures [My Copy] Organic Letters, Vol. 9, No. 14. (1 July 2007), pp. 2697-2700. by Khirud Gogoi, Anita D. Gunjal, Usha D. Phalgune, Vaijayanti A. Kumar posted to dna modification by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-03-27 14:24:58 as
	Mapping the phase diagram of the writhe of DNA nanocircles using atomistic molecular dynamics simulations. [My Copy] Nucleic acids research, Vol. 36, No. 1. (5 January 2008), pp. 21-29. by Sarah A. Harris, Charles A. Laughton, Tanniemola B. Liverpool posted to dna by oteri to the group Structural Biology Group TorVergata on 2009-03-19 11:27:39 as
	DNA Binding of Tilorone: 1H NMR and Calorimetric Studies of the Intercalation [My Copy] Biochemistry, Vol. 46, No. 27. (1 July 2007), pp. 8156-8163. by Tomoki Nishimura, Tadashi Okobira, Andrew M. Kelly, Naohiko Shimada, Yoichi Takeda, Kazuo Sakurai posted to binding calorimetric dna nmr by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-03-10 21:35:59 as
	Effects for the Incorporation of Five-atom Thioacetamido Nucleic Acid (TANA) Backbone on Hybridization Thermodynamics and Kinetics of DNA Duplexes [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Harleen Kaur, Amit Arora, K. Gogoi, et al.P. Solanke, Anita D. Gunjal, Vaijayanti A. Kumar, Souvik Maiti posted to dna modification by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-02-25 17:11:25 as
	Defining the structure of irregular nucleic acids: conventions and principles. [My Copy] Journal of biomolecular structure & dynamics, Vol. 6, No. 4. (February 1989), pp. 655-667. by R. Lavery, H. Sklenar posted to dna by oteri to the group Structural Biology Group TorVergata on 2009-02-18 16:56:04 as
	DNA bending: the prevalence of kinkiness and the virtues of normality. [My Copy] Nucleic acids research, Vol. 26, No. 8. (15 April 1998), pp. 1906-1926. by R. E. Dickerson posted to dna by oteri to the group Structural Biology Group TorVergata on 2009-02-18 16:45:24 as
	Molecular dynamics simulations of DNA curvature and flexibility: helix phasing and premelting. [My Copy] Biopolymers, Vol. 73, No. 3. (15 February 2004), pp. 380-403. by D. L. Beveridge, S. B. Dixit, G. Barreiro, K. M. Thayer posted to dna by oteri to the group Structural Biology Group TorVergata on 2009-02-18 16:44:24 as
	Comparison of analyses of DNA curvature. [My Copy] Journal of biomolecular structure & dynamics, Vol. 21, No. 1. (August 2003), pp. 89-97. by A. Barbic, D. M. Crothers posted to dna by oteri to the group Structural Biology Group TorVergata on 2009-02-18 16:42:47 as
	Computational Analysis of Looping of a Large Family of Highly Bent DNA by LacI [My Copy] Biophysical Journal posted to dna by oteri to the group Structural Biology Group TorVergata on 2009-01-28 10:42:09 as
	Recognition in action: DNA mimicry. [My Copy] Journal of molecular recognition : JMR, Vol. 18, No. 6. (c 2005), pp. 427-430. by D. S. Goodsell posted to dna by oteri to the group Structural Biology Group TorVergata on 2009-01-27 14:23:39 as
	Guarding the GenomeElectrostatic Repulsion of Water by DNA Suppresses a Potent Nuclease Activity of Topoisomerase IB [My Copy] Molecular Cell, Vol. 12, No. 1. (July 2003), pp. 199-208. by L. Tian, C. Claeboe, S. Hecht, S. Shuman posted to dna topoisomerase by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-01-14 18:13:40 as
	Torque and dynamics of linking number relaxation in stretched supercoiled DNA [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 76, No. 2. (2007) by John F. Marko posted to dna supercoiling by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-01-14 16:23:14 as
	Atomistic Simulation of the DNA Helix−Coil Transition† [My Copy] The Journal of Physical Chemistry A, Vol. 111, No. 49. (1 December 2007), pp. 12349-12354. by Stefano Piana posted to dna folding metadynamics molecular_dynamics by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-01-14 16:09:51 as
	DNA–psoralens molecular recognition using molecular dynamics [My Copy] Il Farmaco, Vol. 54, No. 4. (30 April 1999), pp. 202-212. by R. Boggia posted to dna docking molecular_dynamics psoralens by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-01-14 14:47:41 as
	A standard reference frame for the description of nucleic acid base-pair geometry, [My Copy] Journal of Molecular Biology, Vol. 313, No. 1. (12 October 2001), pp. 229-237. by W. Olson posted to dna structure by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2008-12-25 16:35:29 as along with 2 people oteri Elena_Zubova
	Development and validation of empirical force field parameters for netropsin. [My Copy] J Chem Inf Model, Vol. 45, No. 6. (2005), pp. 1546-1552. by U. Bren, M. Hodoscek, J. Koller posted to ab-initio coletta dna parametrization by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2008-12-03 15:12:08 as
	Force field parameters for rotation around chi torsion axis in nucleic acids. [My Copy] Journal of computational chemistry (May 2008) by Hirotaka Ode, Yuri Matsuo, Saburo Neya, Tyuji Hoshino posted to ab-initio coletta dna molecular_dynamics parametrization by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2008-12-03 15:12:08 as
	The structure-based design, synthesis and biological evaluation of DNA-binding bisintercalating bisanthrapyrazole anticancer compounds. [My Copy] Bioorganic & medicinal chemistry, Vol. 16, No. 7. (April 2008), pp. 3959-3968. by B. B. Hasinoff, H. Liang, X. Wu, et al.L. J. Guziec, F. S. Guziec, K. Marshall, J. C. Yalowich posted to coletta dna docking inibitors topoisomerase by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2008-12-03 15:12:06 as
	Multiple binding modes of the camptothecin family to DNA oligomers. [My Copy] Chemistry (Weinheim an der Bergstrasse, Germany), Vol. 10, No. 22. (November 2004), pp. 5776-5787. by W. Bocian, R. Kawecki, E. Bednarek, et al.J. Sitkowski, A. Pietrzyk, M. P. Williamson, P. E. Hansen, L. Kozerski posted to ab-initio coletta dft dna docking parametrization resp topotecan by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2008-12-03 15:12:06 as
	Light-scattering studies on supercoil unwinding. [My Copy] The Biochemical journal, Vol. 133, No. 2. (June 1973), pp. 209-226. by A. M. Campbell, D. J. Jolly posted to coletta dna scattering supercoiling by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2008-12-03 15:12:06 as
	Binding of berberine to human telomeric quadruplex spectroscopic, calorimetric and molecular modeling studies [My Copy] FEBS Journal, Vol. 275, No. 15. (August 2008), pp. 3971-3983. by Arora, Amit, Balasubramanian, et al. Chandramouli, Kumar, Niti, Agrawal, Saurabh, Ojha, P. Rajendra, Maiti, Souvik posted to coletta dna isoquinoline modeling by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2008-12-03 15:12:05 as
	Hydration pattern of A4T4 and T4A4 DNA: A molecular dynamics study [My Copy] Biochemical and Biophysical Research Communications, Vol. 355, No. 4. (April 2007), pp. 1081-1086. by C. Balasubramanian, R. Ojha, S. Maiti posted to coletta dna molecular_dynamics by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2008-12-03 15:12:05 as

Note: You may cite this page as: http://www.citeulike.org/group/7862/tag/dna

damage	246
repair	187
review	178
evolution	139
rna	132
replication	131
methylation	128
protein	112
genome	105
article	90
c_elegans	90
caenorhabditis_elegans	90
cancer	90
celegans	90
elegans	90
nematode	90
wormbase	90
structure	86
sequence	82
binding	68
transcription	61
chromatin	59
genomics	59
gene	55
base_sequence	54
biophysics	54
epigenetics	54
genetics	54
molecular_sequence_data	54
molecular	53
sequencing	49
methods	48
afm	45
bioinformatics	43
checkpoint	43
gold	42
nanotechnology	42
biology	41
amino_acid_sequence	38
dynamics	38
self-assembly	36
cell	32
analysis	31
microarray	31
caenorhabditis_genetics	30
pcr	30
fluorescence	29
genetic	29
single-molecule	29
sms	29
origami	28
proj1	28
virus	28
fluorescent-microscopy	27
optical	27
alignment	26
cloning_molecular	26
forensic	26
histone	26
hybridization	26
molecular_dynamics	26
mutation	26
nucleosome	26
animal	25
force	25
nucleic-acid	25
simulation	25
caenorhabditis_elegans_genetics	24
electrostatics	24
fret	24
p53	24
polymerase	24
electrophoresis	23
expression	23
human	23
animals	22
microfluidics	22
nanoparticles	22
prediction	22
rereplication	22
chromosome	21
imprinting	21
nanostructure	21
spectroscopy	21
wlc	21
array	20
diffusion	20
humans	20
3d	19
aging	19
ancient	19
brca1	19
folding	19
mitochondria	19
motif	19
proteins	19
regulation	19
atm	18
repetitive_sequences_nucleic_acid	18
yeast	18

Group: Structural Biology Group TorVergata

Group: Structural Biology Group TorVergata - with tag dna [44 articles] Export

Related Tags