Group: Nie - library 195 articles Export

	The evolution of gene regulation by transcription factors and microRNAs [My Copy] Nature Reviews Genetics, Vol. 8, No. 2. (01 February 2007), pp. 93-103. by Kevin Chen, Nikolaus Rajewsky posted to gene_regulation by penka to the group Nie on 2007-01-23 22:47:41 as along with 24 people and 3 groups heliopais guhjy antonkratz qfwills vvoorr aprasad jfr indigoviolet tardigrade andersbj dchughes emilyhare cdawson aswin plofje dbikard joepickrell Garamonfok EeHawk3 jayster4 dandaman maralena bootsy robertkofler EisenLab microRNA GIG
	Comprehensive splice-site analysis using comparative genomics. [My Copy] Nucleic Acids Res (12 August 2006) by Nihar Sheth, Xavier Roca, Michelle L L. Hastings, Ted Roeder, Adrian R R. Krainer, Ravi Sachidanandam posted to introns_splicing by penka to the group Nie on 2007-01-22 23:34:28 as along with 5 people and 2 groups thegoose2 tharris aprasad indigoviolet ankur_iitg C. elegans / WormBase EisenLab
	Reference based annotation with GeneMapper. [My Copy] Genome Biol, Vol. 7, No. 4. (5 April 2006) by Sourav Chatterji, Lior Pachter posted to 12dros by penka to the group Nie on 2006-08-30 04:16:01 as along with 4 people and 1 group indigoviolet dpollard wenhan skumagai EisenLab
	A strategy for probing the function of noncoding RNAs finds a repressor of NFAT. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5740. (2 September 2005), pp. 1570-1573. by A. T. Willingham, A. P. Orth, S. Batalov, et al.E. C. Peters, B. G. Wen, P. Aza-Blanc, J. B. Hogenesch, P. G. Schultz posted to introns_conserved_seqs by penka to the group Nie on 2006-08-28 12:10:50 as along with 3 people galka8_diploma sglandt mtagaya
	Distant conserved sequences flanking endothelial-specific promoters contain tissue-specific DNase-hypersensitive sites and over-represented motifs [My Copy] Human Molecular Genetics, Vol. 15, No. 13. (1 July 2006), pp. 2098-2105. by Bernat, A. John, Crawford, et al.E. Gregory, Ogurtsov, Y. Aleksey, Collins, S. Francis, Ginsburg, David, Kondrashov, S. Alexey posted to introns_conserved_seqs by penka to the group Nie on 2006-08-18 11:45:03 as
	Patterns of Evolutionary Constraints in Intronic and Intergenic DNA of Drosophila [My Copy] Genome Res., Vol. 14, No. 2. (1 February 2004), pp. 273-279. by Daniel L. Halligan, Adam Eyre-Walker, Peter Andolfatto, Peter D. Keightley posted to introns1 by penka to the group Nie on 2006-08-18 11:21:56 as along with 1 person emptyhb
	Evolutionary constraints in conserved nongenic sequences of mammals [My Copy] Genome Res., Vol. 15, No. 10. (1 October 2005), pp. 1373-1378. by Peter D. Keightley, Gregory V. Kryukov, Shamil Sunyaev, Daniel L. Halligan, Daniel J. Gaffney posted to introns1 by penka to the group Nie on 2006-08-18 11:19:34 as along with 4 people provero miniprep lilou ankur_iitg
	Intron evolution as a population-genetic process. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 9. (30 April 2002), pp. 6118-6123. by Michael Lynch posted to introns1 by penka to the group Nie on 2006-08-17 09:45:44 as along with 1 person operon
	Alu-containing exons are alternatively spliced. [My Copy] Genome Res, Vol. 12, No. 7. (July 2002), pp. 1060-1067. by R. Sorek, G. Ast, D. Graur posted to splicing by penka to the group Nie on 2006-08-17 09:45:23 as along with 2 people and 2 groups dchughes N0131826 G4ID Genetics-of-Gambling
	Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison. [My Copy] Genome Res (2 June 2006) by Daniel L L. Halligan, Peter D D. Keightley posted to introns1 by penka to the group Nie on 2006-08-15 02:07:18 as along with 7 people and 2 groups tkmaia caseybrown RMGraze dpollard jri cisevol emptyhb EisenLab cis-regulatory-evolution
	Insertion/Deletion and Nucleotide Polymorphism Data Reveal Constraints in Drosophila melanogaster Introns and Intergenic Regions [My Copy] Genetics, Vol. 169, No. 3. (1 March 2005), pp. 1521-1527. by Lino Ometto, Wolfgang Stephan, David De Lorenzo posted to introns1 introns_drosophila by penka to the group Nie on 2006-08-15 02:03:09 as along with 2 people cisevol smbe2008
	Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences. [My Copy] Genome Res, Vol. 11, No. 8. (August 2001), pp. 1335-1345. by C. M. Bergman, M. Kreitman posted to introns1 by penka to the group Nie on 2006-06-11 05:15:07 as along with 4 people and 1 group adijr cisevol hugoparker brant cis-regulatory-evolution
	Evidence for DNA loss as a determinant of genome size. [My Copy] Science, Vol. 287, No. 5455. (11 February 2000), pp. 1060-1062. by D. A. Petrov, T. A. Sangster, J. S. Johnston, D. L. Hartl, K. L. Shaw posted to introns1 by penka to the group Nie on 2006-06-11 04:59:02 as along with 2 people and 1 group timflutre dpollard EisenLab
	Intron Size and Genome Size in Plants [My Copy] Mol Biol Evol, Vol. 19, No. 12. (1 December 2002), pp. 2346-2352. by Jonathan F. Wendel, Richard C. Cronn, Ines Alvarez, Bao Liu, Randall L. Small, David S. Senchina posted to introns1 by penka to the group Nie on 2006-06-11 04:49:22 as
	The C-value Enigma in Plants and Animals: A Review of Parallels and an Appeal for Partnership [My Copy] Ann Bot, Vol. 95, No. 1. (1 January 2005), pp. 133-146. by T. Ryan Gregory posted to no-tag by penka to the group Nie on 2006-06-11 04:47:38 as along with 1 person dandaman
	Intron-genome size relationship on a large evolutionary scale. [My Copy] J Mol Evol, Vol. 49, No. 3. (September 1999), pp. 376-384. by A. E. Vinogradov posted to genome_size_introns introns1 by penka to the group Nie on 2006-06-11 04:40:59 as along with 1 person lilou
	Genome size and intron size in Drosophila. [My Copy] Mol Biol Evol, Vol. 15, No. 6. (June 1998), pp. 770-773. by E. N. Moriyama, D. A. Petrov, D. L. Hartl posted to drosophila genome_size introns1 by penka to the group Nie on 2006-06-05 06:44:30 as along with 2 people brant lilou
	Differences in Genome Size Between Closely Related Species: The Drosophila melanogaster Species Subgroup [My Copy] Molecular Biology and Evolution, Vol. 23, No. 1. (January 2006), pp. 162-167. by Matthieu Boulesteix, Michele Weiss, Christian Biemont posted to drosophila genome_size by penka to the group Nie on 2006-06-05 06:38:11 as
	Evolution of genome size in Drosophila. is the invader's genome being invaded by transposable elements? [My Copy] Mol Biol Evol, Vol. 19, No. 7. (July 2002), pp. 1154-1161. by C. Vieira, C. Nardon, C. Arpin, D. Lepetit, C. Biémont posted to drosophila genome_size te by penka to the group Nie on 2006-06-05 06:18:59 as
	A Third Approach to Gene Prediction Suggests Thousands of Additional Human Transcribed Regions [My Copy] PLoS Comput Biol, Vol. 2, No. 3. (17 March 2006), e18. by Gustavo Glusman, Shizhen Qin, M. Raafat El-Gewely, et al.Andrew F. Siegel, Jared C. Roach, Leroy Hood, Arian F. A. Smit posted to read_next_interesting by penka to the group Nie on 2006-06-04 09:24:44 as along with 3 people and 1 group cisevol GustavoG jfr BergmanLab
	Widespread occurrence of antisense transcription in the human genome. [My Copy] Nature biotechnology, Vol. 21, No. 4. (April 2003), pp. 379-386. by R. Yelin, D. Dahary, R. Sorek, et al.E. Y. Levanon, O. Goldstein, A. Shoshan, A. Diber, S. Biton, Y. Tamir, R. Khosravi, S. Nemzer, E. Pinner, S. Walach, J. Bernstein, K. Savitsky, G. Rotman posted to human introns read_next transcription by penka to the group Nie on 2006-06-04 09:19:39 as along with 4 people guhjy hagechouchin443 mtagaya saru
	Human antisense genes have unusually short introns: evidence for selection for rapid transcription [My Copy] Trends in Genetics, Vol. 21, No. 4. (April 2005), pp. 203-207. by Jianjun Chen, Miao Sun, Laurence D. Hurst, Gordon G. Carmichael, Janet D. Rowley posted to introns by penka to the group Nie on 2006-06-04 09:16:49 as along with 1 person hagechouchin443
	"Genome design" model: Evidence from conserved intronic sequence in human-mouse comparison [My Copy] Genome Res., Vol. 16, No. 3. (1 March 2006), pp. 347-354. by Alexander E. Vinogradov posted to introns by penka to the group Nie on 2006-06-04 09:10:14 as along with 5 people and 1 group aprasad tuck indigoviolet miniprep lilou EisenLab
	A periodic pattern of mRNA secondary structure created by the genetic code [My Copy] Nucl. Acids Res., Vol. 34, No. 8. (8 May 2006), pp. 2428-2437. by Svetlana A. Shabalina, Aleksey Y. Ogurtsov, Nikolay A. Spiridonov posted to protein_evolution read_next by penka to the group Nie on 2006-06-04 07:29:58 as along with 2 people eckart_bindewald raylim
	Intron Size and Exon Evolution in Drosophila [My Copy] Genetics, Vol. 170, No. 1. (1 May 2005), pp. 481-485. by Gabriel Marais, Pierre Nouvellet, Peter D. Keightley, Brian Charlesworth posted to introns1 by penka to the group Nie on 2006-06-04 07:16:27 as along with 1 person lilou
	Why do genes have introns? Recombination might add a new piece to the puzzle [My Copy] Trends in Genetics, Vol. 17, No. 4. (1 April 2001), pp. 172-175. by Laurent Duret posted to introns introns1 by penka to the group Nie on 2006-06-04 06:34:51 as along with 1 person miniprep
	Intrinsically unstructured proteins and their functions. [My Copy] Nature reviews. Molecular cell biology, Vol. 6, No. 3. (01 March 2005), pp. 197-208. by H. Jane Dyson, Peter E. Wright posted to positive_selection protein_evolution read_next by penka to the group Nie on 2006-06-04 03:11:53 as along with 4 people chica yxue chad_davis cactus
	The Origins of Eukaryotic Gene Structure [My Copy] Mol Biol Evol, Vol. 23, No. 2. (1 February 2006), pp. 450-468. by Michael Lynch posted to introns1 by penka to the group Nie on 2006-06-03 10:16:56 as along with 26 people and 9 groups operon daveGerrard inesdesantiago Ema karbak stevanspringer dayjm Ayest indigoviolet tny xwbcn dchughes petecl mtagaya madhadron cmm brixtonmc zhangli msierk brettc web20student BioNica krishnaJCSG timflutre jwestbrook ArtemPankin BergmanLab EisenLab Computational_Systems_Biology FAB-lab G4ID Bioinformatics_MDACC evo-devo King_Lab Genetics-of-Gambling
	Evidence that human genes of modular proteins have retained significantly more ancestral introns than their fly or worm orthologues [My Copy] FEBS Letters, Vol. 565, No. 1-3. (7 May 2004), pp. 127-132. by Laszlo Banyai, Laszlo Patthy posted to introns introns1 by penka to the group Nie on 2006-06-03 10:16:27 as along with 1 person tny
	Introns and the origin of nucleusâcytosol compartmentalization [My Copy] Nature, Vol. 440, No. 7080., pp. 41-45. by William Martin, Eugene V. Koonin posted to introns by penka to the group Nie on 2006-06-03 10:15:21 as along with 5 people and 3 groups lyenh dayjm bala marcius tny BioinfoCIPF SGU-CIPF DictyosteliumGroup
	The evolutionary fate and consequences of duplicate genes. [My Copy] Science, Vol. 290, No. 5494. (10 November 2000), pp. 1151-1155. by M. Lynch, J. S. Conery posted to duplicate_genes duplication by penka to the group Nie on 2006-05-17 10:23:24 as
	Identification and analysis of alternative splicing events conserved in human and mouse [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 8. (22 February 2005), pp. 2850-2855. by Gene W. Yeo, Eric Van Nostrand, Dirk Holste, Tomaso Poggio, Christopher B. Burge posted to introns splicing by penka to the group Nie on 2006-05-03 21:01:33 as along with 4 people jonilaserson eoghanharr radek stajich
	Worm genomes hold the smoking guns of intron gain. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 31. (3 August 2004), pp. 11195-11196. by J. M. Logsdon posted to introns by penka to the group Nie on 2006-05-02 00:02:06 as
	A new Drosophila spliceosomal intron position is common in plants. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 11. (27 May 2003), pp. 6580-6583. by R. Tarrio, F. Rodríguez-Trelles, F. J. Ayala posted to drosophila introns by penka to the group Nie on 2006-05-01 23:55:58 as
	Mystery of intron gain. [My Copy] Genome Res, Vol. 13, No. 10. (October 2003), pp. 2236-2241. by A. Fedorov, S. Roy, L. Fedorova, W. Gilbert posted to introns by penka to the group Nie on 2006-05-01 23:48:20 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	Origins of recently gained introns in Caenorhabditis [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 31. (3 August 2004), pp. 11362-11367. by Avril Coghlan, Kenneth H. Wolfe posted to elegans introns by penka to the group Nie on 2006-05-01 23:45:35 as along with 3 people and 1 group sujaikumar thegoose2 tharris C. elegans / WormBase
	New maximum likelihood estimators for eukaryotic intron evolution. [My Copy] PLoS Comput Biol, Vol. 1, No. 7. (December 2005) by H. D. Nguyen, M. Yoshihama, N. Kenmochi posted to introns methods by penka to the group Nie on 2006-05-01 23:42:21 as
	Conservation versus parallel gains in intron evolution. [My Copy] Nucleic Acids Res, Vol. 33, No. 6. (2005), pp. 1741-1748. by A. V. Sverdlov, I. B. Rogozin, V. N. Babenko, E. V. Koonin posted to introns orthologs by penka to the group Nie on 2006-05-01 23:40:20 as
	The evolutionary gain of spliceosomal introns: sequence and phase preferences. [My Copy] Mol Biol Evol, Vol. 21, No. 7. (July 2004), pp. 1252-1263. by W. G. Qiu, N. Schisler, A. Stoltzfus posted to introns by penka to the group Nie on 2006-05-01 23:38:38 as
	Prevalence of intron gain over intron loss in the evolution of paralogous gene families. [My Copy] Nucleic Acids Res, Vol. 32, No. 12. (2004), pp. 3724-3733. by V. N. Babenko, I. B. Rogozin, S. L. Mekhedov, E. V. Koonin posted to introns by penka to the group Nie on 2006-05-01 23:37:45 as along with 1 person miniprep
	The evolution of spliceosomal introns. [My Copy] Curr Opin Genet Dev, Vol. 12, No. 6. (December 2002), pp. 701-710. by M. Lynch, A. O. Richardson posted to no-tag by penka to the group Nie on 2006-05-01 23:35:12 as
	Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content [My Copy] Genome Biology, Vol. 6, No. 8. (2005), R67. by Penelope Haddrill, Brian Charlesworth, Daniel Halligan, Peter Andolfatto posted to drosophila introns introns1 by penka to the group Nie on 2006-05-01 23:21:54 as along with 3 people and 1 group gregoryross lilou cisevol cis-regulatory-evolution
	Selective constraints on intron evolution in Drosophila. [My Copy] Genetics, Vol. 165, No. 4. (December 2003), pp. 1843-1851. by J. Parsch posted to drosophila introns introns1 by penka to the group Nie on 2006-05-01 23:20:51 as
	An intronic enhancer regulates splicing of the twintron of Drosophila melanogaster prospero pre-mRNA by two different spliceosomes. [My Copy] Mol Cell Biol, Vol. 24, No. 5. (March 2004), pp. 1855-1869. by P. Scamborova, A. Wong, J. A. Steitz posted to introns by penka to the group Nie on 2006-05-01 23:17:05 as
	Evidence for splice site pairing via intron definition in Schizosaccharomyces pombe. [My Copy] Mol Cell Biol, Vol. 20, No. 21. (November 2000), pp. 7955-7970. by C. M. Romfo, C. J. Alvarez, W. J. van Heeckeren, C. J. Webb, J. A. Wise posted to introns by penka to the group Nie on 2006-05-01 23:16:35 as
	Introns and splicing elements of five diverse fungi. [My Copy] Eukaryot Cell, Vol. 3, No. 5. (October 2004), pp. 1088-1100. by D. M. Kupfer, S. D. Drabenstot, K. L. Buchanan, et al.H. Lai, H. Zhu, D. W. Dyer, B. A. Roe, J. W. Murphy posted to introns by penka to the group Nie on 2006-05-01 23:16:06 as along with 5 people and 1 group jwestbrook alexl GustavoLacerda angieju seitentaisei King_Lab
	Genomic sequence, splicing, and gene annotation. [My Copy] Am J Hum Genet, Vol. 67, No. 4. (October 2000), pp. 788-792. by S. M. Mount posted to introns by penka to the group Nie on 2006-05-01 23:15:03 as
	Intron Size Correlates Positively With Recombination Rate in Caenorhabditis elegans [My Copy] Genetics, Vol. 166, No. 3. (1 March 2004), pp. 1585-1590. by Anuphap Prachumwat, Laura Devincentis, Michael F. Palopoli posted to elegans introns by penka to the group Nie on 2006-05-01 23:10:20 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	Influence of intron length on alternative splicing of CD44. [My Copy] Mol Cell Biol, Vol. 18, No. 10. (October 1998), pp. 5930-5941. by M. V. Bell, A. E. Cowper, M. P. Lefranc, J. I. Bell, G. R. Screaton posted to introns by penka to the group Nie on 2006-05-01 23:09:04 as
	What controls the length of noncoding DNA? [My Copy] Curr Opin Genet Dev, Vol. 11, No. 6. (December 2001), pp. 652-659. by J. M. Comeron posted to noncodingdna by penka to the group Nie on 2006-05-01 22:53:53 as along with 3 people aprasad miniprep lilou

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bio113paper	32
psa	29
introns	26
drosophila	23
introns1	19
pas	18
protein_evolution	18
read_next	18
bio113paper_q	14
pxas	12
expression	10
x	10
duplicate_genes	8
elegans	6
human	6
methods	6
balanced_selection	5
duplication	5
kaks	5
pxas_dc	5
data	4
splicing	4
theory	4
yeast	4
arabidopsis_thaliana	3
dosage_compensation	3
genome_size	3
positive_selection	3
pxas_dupl	3
software	3
introns_conserved_seqs	2
melanogaster	2
neutral_evolution	2
te	2
12dros	1
aa	1
bacteria	1
biglab	1
check_out	1
chimpanzee	1
coding_region	1
codon_usage	1
degeneration	1
deletion	1
dmitri	1
dpse	1
ecoli	1
expression_pattern	1
gene_regulation	1
genome_size_introns	1
insertion	1
introns_drosophila	1
introns_splicing	1
mammalian	1
miranda	1
mk	1
mouse	1
noncodingdna	1
noncoding_sequence	1
orthologs	1
paml	1
parralel_genotypic_adaptation	1
pse	1
rat	1
read_next_interesting	1
tes	1
transcription	1
y	1

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