Group: FAB-lab - with tag alignment [18 articles] Export

Recent papers posted by members of the FAB-lab group with tag alignment

	Pandit: a database of protein and associated nucleotide domains with inferred trees. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 12. (12 August 2003), pp. 1556-1563. by S. Whelan, P. I. de Bakker, N. Goldman posted to alignment amino-acid databases dna evolution homology likelihood methods models phylogenomics phylogeny phyloinformatics protein proteins sequence by rvosa to the group FAB-lab on 2008-12-18 02:07:34 as along with 1 person mcox
	PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by S. Whelan, P. I. de Bakker, E. Quevillon, N. Rodriguez, N. Goldman posted to alignment amino-acid data-mining databases dna evolution homology methods phylogeny protein proteins sequence by rvosa to the group FAB-lab on 2008-12-18 02:00:54 as along with 1 person Schmidtc
	Detecting lineage-specific adaptive evolution of brain-expressed genes in human using rhesus macaque as outgroup [My Copy] Genomics, Vol. 88, No. 6. (December 2006), pp. 745-751. by Xiao-Jing Yu, Hong-Kun Zheng, Jun Wang, Wen Wang, Bing Su posted to adaptation alignment amino-acid animals anthropology clock-like comparative data-mining divergence dna encephalization evolution genetics genome hominidae humans mammals models phylogenomics primates protein proteins proteomics rates ratio-test selection sequence-evolution by rvosa to the group FAB-lab on 2008-08-12 08:00:48 as along with 1 person kndiaye
	An evaluation of the molecular clock hypothesis using mammalian DNA sequences [My Copy] Journal of Molecular Evolution, Vol. 25, No. 4. (1987), pp. 330-342. by Wen-Hsiung Li, Masako Tanimura, Paul Sharp posted to alignment animals dna evolution genetics primates rodents sequence-evolution substitution-models by rvosa to the group FAB-lab on 2008-08-09 05:56:41 as
	BranchClust: A phylogenetic algorithm for selecting gene families [My Copy] BMC Bioinformatics, Vol. 8 (10 April 2007), 120. by Maria S. Poptsova, Peter J. Gogarten posted to algorithms alignment data-mining genome homology methods phylogenomics phyloinformatics programming by rvosa to the group FAB-lab on 2008-08-08 07:02:46 as along with 4 people and 1 group GustavoLacerda cgaugain dandaman stajich Mycology
	18S ribosomal RNA and tetrapod phylogeny [My Copy] Systematic Biology, Vol. 52, No. 3. (2003), pp. 283-295. by X. H. Xia, Z. Xie, K. M. Kjer posted to alignment animals bibtex-import birds fossils mammals morphology vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as
	Iterative pass optimization of sequence data [My Copy] Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 3. (2003), pp. 254-260. by W. C. Wheeler posted to algorithms alignment bibtex-import methods phylogeny sequence by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as
	Search-based optimization [My Copy] Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 4. (2003), pp. 348-355. by W. C. Wheeler posted to alignment bibtex-import methods parsimony by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as
	Inching toward Reality: An Improved Likelihood Model of Sequence Evolution [My Copy] Journal of Molecular Evolution, Vol. 34 (1992), pp. 3-16. by Jeffrey L. Thorne, Hirohisa Kishino, Joseph Felsenstein posted to algorithms alignment bibtex-import evolution likelihood methods programming substitution-models by rvosa to the group FAB-lab on 2008-02-06 23:58:28 as
	CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice [My Copy] Nucleic Acids Research, Vol. 22 (1994), pp. 4673-4680. by J. D. Thompson, D. G. Higgins, T. J. Gibson posted to alignment bibtex-import software by rvosa to the group FAB-lab on 2008-02-06 23:58:28 as
	Bio::CDAT - An Object for Evolutionary Analysis of Data [My Copy] (2006) by A. Stoltzfus, R. A. Vos, J. Reese, W. Qiu posted to alignment bibtex-import evolution inference phyloinformatics programming software by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as
	Multiple Sequence Alignment in Phylogenetic Analysis [My Copy] Molecular Phylogenetics and Evolution, Vol. 16, No. 3. (2000), pp. 317-330. by Aloysius Phillips, Daniel Janies, Ward C. Wheeler posted to alignment bibtex-import phylogeny by rvosa to the group FAB-lab on 2008-02-06 23:58:21 as
	The problem with the Paleoptera Problem: sense and sensitivity [My Copy] Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 5. (2003), pp. 432-442. by T. H. Ogden, M. F. Whiting posted to alignment animals bibtex-import classification diversification dna insects invertebrates methods morphology phylogeny by rvosa to the group FAB-lab on 2008-02-06 23:58:18 as
	Mesquite: a modular system for evolutionary analysis. [My Copy] (2001) by Wayne P. Maddison, D. R. Maddison posted to alignment bibtex-import comparative data-mining evolution phylogeny phyloinformatics programming software by rvosa to the group FAB-lab on 2008-02-06 23:58:16 as
	Basic local alignment search tool [My Copy] Journal of Molecular Biology, Vol. 215 (1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to alignment bibtex-import software by rvosa to the group FAB-lab on 2008-02-06 23:58:02 as
	Recent Evolutions of Multiple Sequence Alignment Algorithms [My Copy] PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123. by Cédric Notredame posted to algorithms alignment methods sequence by rvosa to the group FAB-lab on 2008-02-01 11:26:13 as along with 11 people and 1 group druvus treangen mdimmic timflutre stajich zwang cabbagezs groepl yoanjacquemin marti smbe2008 Bioinformatics
	The Bioperl Toolkit: Perl Modules for the Life Sciences [My Copy] Genome Res., Vol. 12, No. 10. (1 October 2002), pp. 1611-1618. by Jason E. Stajich, David Block, Kris Boulez, et al.Steven E. Brenner, Stephen A. Chervitz, Chris Dagdigian, Georg Fuellen, James G. Gilbert, Ian Korf, Hilmar Lapp, Heikki Lehvaslaiho, Chad Matsalla, Chris J. Mungall, Brian I. Osborne, Matthew R. Pocock, Peter Schattner, Martin Senger, Lincoln D. Stein, Elia Stupka, Mark D. Wilkinson, Ewan Birney posted to algorithms alignment databases data-mining methods programming software by rvosa to the group FAB-lab on 2008-02-01 11:05:23 as along with 26 people and 1 group ludaesch jsatkosk kiekyon Thaverkamp Cortel brdwilde daforerog GustavoLacerda krapnik jmeppley chad_davis indigoviolet skhadar dullhunk dgront stajich noby incovoma glycine tyrosine threonine valine nklee hpaces sekmi ninch EisenLab
	Heads or Tails: A Simple Reliability Check for Multiple Sequence Alignments [My Copy] Mol Biol Evol, Vol. 24, No. 6. (1 June 2007), pp. 1380-1383. by Giddy Landan, Dan Graur posted to algorithms alignment amino-acid data-mining dna methods phylogeny phyloinformatics sequence by rvosa to the group FAB-lab on 2008-02-01 11:01:06 as along with 9 people treangen druvus aprasad BioNica stajich cjeans zwang lilou mailund

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sequence	277
protein	186
bioinformatics	180
structure	171
software	167
algorithm	160
multiple	112
evolution	107
phylogeny	88
genome	82
method	74
rna	72
msa	58
phylogenetics	55
methods	54
accuracy	52
review	46
algorithms	45
sequencing	40
statistics	35
database	31
similarity	29
tool	29
genomics	28
dna	26
tools	26
prediction	25
face	24
testing	24
clustering	23
registration	23
microtubules	22
networks	22
homology	21
ngs	21
tree	21
2008	19
assembly	19
comparison	19
indel	19
proteins	19
hmm	18
network	18
annotation	17
mapping	17
motif	17
short-read	17
comparative	16
thesis	16
visualization	16
analysis	15
conserved	15
local	15
model	15
seq	15
alignment_accuracy	14
bayesian	14
molecular	14
pathways	14
phylogenomics	14
2007	13
data-mining	13
databases	13
indels	13
proteome	13
snp	13
structural	13
gene	12
major-proposal	12
modeling	12
multiple_sequence_alignment	12
nlp	12
noncoding	12
ontology	12
orientation	12
pair_project	12
proj_assembly	12
short	12
binding	11
comparative_genomics	11
conservation	11
dialogue	11
kinesin	11
new_paper	11
nextgen	11
primer	11
proteomics	11
read	11
sequence-alignment	11
sequences	11
solexa	11
comps	10
electrostatic	10
human	10
modelling	10
programming	10
recognition	10
scoring	10
selection	10
validation	10

Group: FAB-lab - with tag alignment [18 articles] Export

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