Group: FAB-lab - with tag methods [153 articles] Export

Recent papers posted by members of the FAB-lab group with tag methods

	The Neandertal genome and ancient DNA authenticity [My Copy] The EMBO Journal, Vol. 28, No. 17. (06 August 2009), pp. 2494-2502. by Richard E. Green, Adrian W. Briggs, Johannes Krause, et al.Kay Prufer, Hernan A. Burbano, Michael Siebauer, Michael Lachmann, Svante Paabo posted to primates phylogenomics nuclear mitochondrial methods humans hominidae genome genetics fossils divergence data-mining anthropology by rvosa to the group FAB-lab on 2009-10-06 09:58:04 as
	Life sciences on the Semantic Web: the Neurocommons and beyond. [My Copy] Briefings in bioinformatics, Vol. 10, No. 2. (1 March 2009), pp. 193-204. by Alan Ruttenberg, Jonathan A. Rees, Matthias Samwald, M. Scott Marshall posted to data-mining databases dbhack1 methods nexml ontology phyloinformatics programming software xml by rvosa to the group FAB-lab on 2009-07-30 21:06:03 as along with 10 people and 1 group jfr Effie guhjy druvus mikel_egana ehealthgr cassj dullhunk allysonlister fgibson NaCTeM
	Advancing translational research with the Semantic Web [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 3. (2007), S2. by Alan Ruttenberg, Tim Clark, William Bug, et al.Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano, M. Scott Marshall, Chimezie Ogbuji, Jonathan Rees, Susie Stephens, Gwendolyn Wong, Elizabeth Wu, Davide Zaccagnini, Tonya Hongsermeier, Eric Neumann, Ivan Herman, Kei H. Cheung posted to data-mining databases dbhack1 methods nexml ontology programming software xml by rvosa to the group FAB-lab on 2009-07-30 21:04:48 as along with 26 people and 3 groups beanformer artaban421 nicklynch vkwn eesruiz Effie simonmcbride druvus gmcmahon fgibson nuin daforerog guhjy Cortel wnpx dullhunk hpiwowar egonw suizan jasonbobe ibuch PredictER bmaust benfqt Gaetan dansullivanblk ImagCom - Biomedical Text Computing NaCTeM Evidence-based-medicine
	PhyloExplorer: a web server to validate, explore and query phylogenetic trees [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (18 May 2009), 108. by Vincent Ranwez, Nicolas Clairon, Frederic Delsuc, et al.Saeed Pourali, Nicolas Auberval, Sorel Diser, Vincent Berry posted to algorithms biodiversity classification data-mining databases graph graphics methods phyloinformatics programming software taxonomy by rvosa to the group FAB-lab on 2009-06-27 09:11:43 as along with 1 person djkt
	BEAST: Bayesian evolutionary analysis by sampling trees. [My Copy] BMC evolutionary biology, Vol. 7, No. 1. (08 November 2007), 214. by Alexei J. Drummond, Andrew Rambaut posted to algorithms bayesian markov-chains methods phylogeny phyloinformatics software xml by rvosa to the group FAB-lab on 2009-05-22 07:02:11 as along with 4 people lizbiogen operon druvus treangen
	The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages [My Copy] Proceedings of the National Academy of Sciences (7 April 2009) by Yuri I. Wolf, Pavel S. Novichkov, Georgy P. Karev, Eugene V. Koonin, David J. Lipman posted to adaptation amino-acid divergence estimation genetics genome methods models protein rates selection sequence-evolution statistics by rvosa to the group FAB-lab on 2009-04-24 09:19:23 as along with 4 people RamuAnandakrishnan deanmalmgren jjray gjuggler
	Reliabilities of identifying positive selection by the branch-site and the site-prediction methods [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6700-6705. by Masafumi Nozawa, Yoshiyuki Suzuki, Masatoshi Nei posted to adaptation amino-acid likelihood methods protein selection substitution-models vertebrates by rvosa to the group FAB-lab on 2009-04-24 09:15:52 as along with 8 people ckenaley sameersoi djkt ramiro2k gjuggler bpcusack atphan gulsacan
	A Linear-Time Majority Tree Algorithm [My Copy] Algorithms in Bioinformatics (2003), pp. 216-227. by Nina Amenta, Frederick Clarke, Katherine St. John posted to algorithms graph methods phylogeny phyloinformatics software topology by rvosa to the group FAB-lab on 2008-12-18 02:35:27 as
	Abstract A Randomized Linear-time Majority Tree Algorithm [My Copy] by Nina Amenta, Frederick Clarke, Katherine St. John posted to algorithms data-mining methods phylogeny phyloinformatics software by rvosa to the group FAB-lab on 2008-12-18 02:26:43 as
	MAXIMUM LIKELIHOOD FRAMEWORK FOR GENETIC SEQUENCE ANALYSIS [My Copy] by Sergei L. Pond posted to algorithms dna estimation inference likelihood methods models phylogeny phyloinformatics sequence-evolution substitution-models by rvosa to the group FAB-lab on 2008-12-18 02:20:48 as
	Pandit: a database of protein and associated nucleotide domains with inferred trees. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 12. (12 August 2003), pp. 1556-1563. by S. Whelan, P. I. de Bakker, N. Goldman posted to alignment amino-acid databases dna evolution homology likelihood methods models phylogenomics phylogeny phyloinformatics protein proteins sequence by rvosa to the group FAB-lab on 2008-12-18 02:07:34 as along with 1 person mcox
	PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by S. Whelan, P. I. de Bakker, E. Quevillon, N. Rodriguez, N. Goldman posted to alignment amino-acid data-mining databases dna evolution homology methods phylogeny protein proteins sequence by rvosa to the group FAB-lab on 2008-12-18 02:00:54 as along with 1 person Schmidtc
	Mixture models in phylogenetic inference [My Copy] (28 April 2008) by Mark Pagel posted to bayesian markov-chains methods monte-carlo phylogeny rates substitution-models by rvosa to the group FAB-lab on 2008-08-18 02:27:00 as
	Modelling Heterotachy in Phylogenetic Inference by Reversible-Jump Markov chain Monte Carlo [My Copy] Philosophical Transactions of the Royal Society of London Series B: Biological Sciences, Vol. In review by Mark Pagel, Andrew Meade posted to bayesian markov-chains methods monte-carlo rates substitution-models by rvosa to the group FAB-lab on 2008-08-18 01:50:23 as
	Comparative analysis by independent contrasts (CAIC): an Apple Macintosh application for analysing comparative data. [My Copy] Computer Appl. Biosciences, Vol. 11 (1999), pp. 247-251. by Andy Purvis, Andrew Rambaut posted to comparative methods software by rvosa to the group FAB-lab on 2008-08-14 03:02:20 as
	Use and misuse of the gene ontology annotations [My Copy] Nature Reviews Genetics, Vol. 9, No. 7. (13 May 2008), pp. 509-515. by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici posted to genetics genome methods ontology programming by rvosa to the group FAB-lab on 2008-08-12 07:52:51 as along with 40 people and 2 groups singhsh epigenetics davidmam Thaverkamp druvus dullhunk suizan dolchan Borelli Zephyrus VGreiff klo thomaskelder ilyashl phoenixzxl MarcoAlvarez isakemal bertelsen daforerog jfr djkt guhjy aheilbut mariakmejia cmzmasek A_Olympia realzhang carlk roys gjuggler fpattyn RamuAnandakrishnan ptrobajo giovenko cabbagesofdoom tmmurali renatomilani capitall marck bpcusack 8_01 logics of knowledge
	Cases in which Parsimony or Compatibility Methods Will be Positively Misleading [My Copy] Systematic Zoology, Vol. 27, No. 4. (1978), pp. 401-410. by Joseph Felsenstein posted to characters inference methods parsimony phylogeny by rvosa to the group FAB-lab on 2008-08-12 05:17:15 as
	Frequent False Detection of Positive Selection by the Likelihood Method with Branch-Site Models [My Copy] Mol Biol Evol, Vol. 21, No. 7. (1 July 2004), pp. 1332-1339. by Jianzhi Zhang posted to genetics likelihood methods selection sequence-evolution substitution-models by rvosa to the group FAB-lab on 2008-08-12 04:02:24 as along with 1 person Garamonfok
	Calculating independent contrasts for the comparative study of substitution rates. [My Copy] Journal of theoretical biology, Vol. 251, No. 4. (21 April 2008), pp. 667-678. by J. J. Welch, D. Waxman posted to comparative contrasts likelihood methods rates substitution-models by rvosa to the group FAB-lab on 2008-08-09 21:42:43 as along with 1 person druvus
	Phylogenetic Mixture Models Can Reduce Node-Density Artifacts [My Copy] Systematic Biology, Vol. 57, No. 2. (2008), pp. 286-293. by Chris Venditti, Andrew Meade, Mark Pagel posted to inference methods models phylogeny sequence-evolution substitution-models by rvosa to the group FAB-lab on 2008-08-09 10:43:23 as along with 1 person aprasad
	A Phylogenetic Mixture Model for Detecting Pattern-Heterogeneity in Gene Sequence or Character-State Data [My Copy] Syst Biol, Vol. 53, No. 4. (1 August 2004), pp. 571-581. by Mark Pagel, Andrew Meade posted to characters genetics methods models phylogeny sequence substitution-models by rvosa to the group FAB-lab on 2008-08-09 10:21:04 as along with 1 person djohnson
	Bayesian Analysis of Correlated Evolution of Discrete Characters by Reversible-Jump Markov Chain Monte Carlo. [My Copy] The American naturalist, Vol. 167, No. 6. (9 May 2006) by Mark Pagel, Andrew Meade posted to bayesian characters comparative evolution markov-chains methods monte-carlo statistics by rvosa to the group FAB-lab on 2008-08-09 09:41:27 as along with 1 person yonatanf
	BranchClust: A phylogenetic algorithm for selecting gene families [My Copy] BMC Bioinformatics, Vol. 8 (10 April 2007), 120. by Maria S. Poptsova, Peter J. Gogarten posted to algorithms alignment data-mining genome homology methods phylogenomics phyloinformatics programming by rvosa to the group FAB-lab on 2008-08-08 07:02:46 as along with 4 people and 1 group GustavoLacerda cgaugain dandaman stajich Mycology
	Accelerated molecular evolution as a consequence of transitions to mutualism [My Copy] Proceedings of the national academy of sciences, Vol. 94, No. 21. (1997), pp. 11422-11427. by Francois Lutzoni, Mark Pagel posted to bacteria comparative divergence fungi methods rates ratio-test substitution-models by rvosa to the group FAB-lab on 2008-07-11 18:54:57 as
	Understanding the Metropolis-Hastings Algorithm [My Copy] The American Statistician, Vol. 49, No. 4. (1995), pp. 327-335. by Siddhartha Chib, Edward Greenberg posted to algorithms bayesian markov-chains methods monte-carlo statistics by rvosa to the group FAB-lab on 2008-05-13 01:30:09 as along with 15 people and 1 group fordela ashleygeorge Borelli okouma ldietz pcarbo icosma adriandefroment leonnovelo i-stevenson jrw quianominorleo ansobol markusd nojhan Metaheuristics
	What is principal component analysis? [My Copy] Nature Biotechnology, Vol. 26, No. 3. (01 March 2008), pp. 303-304. by Markus Ringner posted to data-mining methods statistics by rvosa to the group FAB-lab on 2008-05-13 01:28:59 as along with 69 people and 2 groups singhsh Jporci tnhh ruvido ucbcjbm daforerog Diego_Prada abellogin nguizard thegoose2 arsyed Zephyrus flips svozil VGreiff kaniko ssgong Yanno guhjy operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega zhouyu rsantana sobolevnrm fryanpan kengg dekay23 adacier hpaces waghsk rchauhan pavanghatty kristgy jfr bibay2004 xingxu quianominorleo craigwilson06 ashko markusd dayjm dimka i-stevenson chrissp100 tharris ale mjoach HugoMarcelo jdiezperezj rrbarb Nici baker-group Bioinformatics
	Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). [My Copy] Omics : a journal of integrative biology, Vol. 10, No. 2. (2006), pp. 231-237. by J. Leebens-Mack, T. Vision, E. Brenner, et al.J. E. Bowers, S. Cannon, M. J. Clement, C. W. Cunningham, C. dePamphilis, R. deSalle, J. J. Doyle, J. A. Eisen, X. Gu, J. Harshman, R. K. Jansen, E. A. Kellogg, E. V. Koonin, B. D. Mishler, H. Philippe, J. C. Pires, Y. L. Qiu, S. Y. Rhee, K. Sjölander, D. E. Soltis, P. S. Soltis, D. W. Stevenson, K. Wall, T. Warnow, C. Zmasek posted to methods by rvosa to the group FAB-lab on 2008-04-22 20:26:55 as along with 3 people AaronDarling cmzmasek jandot
	Missing data, incomplete taxa, and phylogenetic accuracy [My Copy] Systematic Biology, Vol. 52, No. 4. (2003), pp. 528-538. by J. J. Wiens posted to bibtex-import characters data-mining fossils methods parsimony phylogeny phyloinformatics simulation by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as
	A novel method for economical diagnosis of cladograms under Sankoff optimization [My Copy] Cladistics, Vol. 10 (1994), pp. 207-213. by Ward C. Wheeler, Kevin Nixon posted to algorithms bibtex-import methods parsimony phylogeny by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as
	Iterative pass optimization of sequence data [My Copy] Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 3. (2003), pp. 254-260. by W. C. Wheeler posted to algorithms alignment bibtex-import methods phylogeny sequence by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as
	Search-based optimization [My Copy] Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 4. (2003), pp. 348-355. by W. C. Wheeler posted to alignment bibtex-import methods parsimony by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as
	Combinatorial weights in phylogenetic analysis: a statistical parsimony procedure [My Copy] Cladistics, Vol. 6 (1990), pp. 269-275. by Ward C. Wheeler posted to algorithms bibtex-import methods parsimony phylogeny weighting by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as
	Noise [My Copy] Cladistics, Vol. 15 (1999), pp. 51-64. by John W. Wenzel, Mark E. Siddall posted to bibtex-import methods parsimony phylogeny by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as
	IQPNNI: Moving Fast Through Tree Space and Stopping in Time [My Copy] Molecular Biology and Evolution, Vol. 21, No. 8. (2004), pp. 1565-1571. by Le S. Vinh, Arndt von Haeseler posted to algorithms bibtex-import likelihood methods by rvosa to the group FAB-lab on 2008-02-06 23:58:29 as
	Inching toward Reality: An Improved Likelihood Model of Sequence Evolution [My Copy] Journal of Molecular Evolution, Vol. 34 (1992), pp. 3-16. by Jeffrey L. Thorne, Hirohisa Kishino, Joseph Felsenstein posted to algorithms alignment bibtex-import evolution likelihood methods programming substitution-models by rvosa to the group FAB-lab on 2008-02-06 23:58:28 as
	Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used [My Copy] Molecular Biology and Evolution, Vol. 17, No. 8. (2000), pp. 1251-1258. by K. Takahashi, M. Nei posted to algorithms bibtex-import likelihood methods parsimony by rvosa to the group FAB-lab on 2008-02-06 23:58:28 as
	Global lability, regional resolution, and majority-rule consensus bias [My Copy] Paleobiology, Vol. 27, No. 2. (2001), pp. 254-261. by C. D. Sumrall, C. A. Brochu, J. W. Merck posted to bibtex-import fossils methods by rvosa to the group FAB-lab on 2008-02-06 23:58:28 as
	Distributions of Tree Comparison Metrics - Some New Results [My Copy] Systematic Biology, Vol. 42, No. 2. (1993), pp. 126-141. by M. A. Steel, D. Penny posted to algorithms bibtex-import evolution methods phylogeny topology by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as along with 1 person druvus
	The maximum likelihood point for a phylogenetic tree is not unique [My Copy] Systematic Biology, Vol. 43 (1994), pp. 560-564. by M. A. Steel posted to bibtex-import likelihood methods phylogeny by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as
	Numerical taxonomy: The principles and practice of numerical classification. [My Copy] (1973) by P. H. A. Sneath, R. R. Sokal posted to bibtex-import classification methods phylogeny taxonomy by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as
	Amino acid vs. nucleotide characters: challenging preconceived notions [My Copy] Molecular Phylogenetics and Evolution, Vol. 24 (2002), pp. 78-90. by M. P. Simmons, H. Ochoterena, J. V. Freudenstein posted to amino-acid bibtex-import characters dna methods phylogeny by rvosa to the group FAB-lab on 2008-02-06 23:58:26 as
	PAUPRat: PAUP* implementation of the parsimony ratchet. [My Copy] (2001) by D. S. Sikes, Paul O. Lewis posted to algorithms bibtex-import methods parsimony software by rvosa to the group FAB-lab on 2008-02-06 23:58:26 as
	Brooks parsimony analysis: a valiant failure [My Copy] Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 6. (2003), pp. 554-564. by M. E. Siddall, S. L. Perkins posted to bibtex-import methods parsimony by rvosa to the group FAB-lab on 2008-02-06 23:58:26 as
	A hypothesis-independent method of character weighting for cladistic analysis [My Copy] Cladistics, Vol. 5 (1989), pp. 63-86. by Michael J. Sharkey posted to bibtex-import characters methods parsimony phylogeny weighting by rvosa to the group FAB-lab on 2008-02-06 23:58:26 as
	Supertree algorithms for ancestral divergence dates and nested taxa [My Copy] Bioinformatics, Vol. 20, No. 0. (2004), pp. 1-6. by C. Semple, P. Daniel, W. Hordijk, Page, M. A. Steel posted to algorithms bibtex-import divergence methods phylogeny supertree by rvosa to the group FAB-lab on 2008-02-06 23:58:26 as
	Simultaneous analysis of basal Hymenoptera (Insecta): introducing robust-choice sensitivity analysis [My Copy] Biological Journal of the Linnean Society, Vol. 79, No. 2. (2003), pp. 245-275. by S. Schulmeister posted to animals bibtex-import classification insects invertebrates methods phylogeny taxonomy by rvosa to the group FAB-lab on 2008-02-06 23:58:25 as
	Review of morphological evidence on the phylogeny of basal Hymenoptera (Insecta), with a discussion of the ordering of characters [My Copy] Biological Journal of the Linnean Society, Vol. 79, No. 2. (2003), pp. 209-243. by S. Schulmeister posted to animals bibtex-import characters data-mining insects invertebrates methods morphology phylogeny phyloinformatics by rvosa to the group FAB-lab on 2008-02-06 23:58:25 as
	Phylogenetic supertrees: assembling the trees of life [My Copy] Trends in Ecology and Evolution, Vol. 13, No. 3. (1998), pp. 105-109. by Michael J. Sanderson, Andy Purvis, Chris Henze posted to bibtex-import methods mrp phylogeny supertree by rvosa to the group FAB-lab on 2008-02-06 23:58:24 as
	Stochastic search strategy for estimation of maximum likelihood phylogenetic trees [My Copy] Systematic Biology, Vol. 50, No. 1. (2001), pp. 7-17. by L. A. Salter, D. K. Pearl posted to bibtex-import likelihood methods phylogeny by rvosa to the group FAB-lab on 2008-02-06 23:58:24 as
	Complexity of the likelihood surface for a large DNA dataset [My Copy] Systematic Biology, Vol. 50, No. 6. (2001), pp. 970-978. by L. A. Salter posted to bibtex-import likelihood methods phylogeny by rvosa to the group FAB-lab on 2008-02-06 23:58:24 as

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statistics	319
fmri	289
review	271
research	213
bioinformatics	173
phylogenetics	139
qualitative	123
microarray	118
analysis	109
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genetics	96
design	92
epigenetics	92
genomics	90
evolution	81
software	79
ethnography	77
tools	77
cancer	74
theory	74
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gwas	66
protein	66
metagenomics	65
genome	63
phylogeny	63
method	62
imaging	60
ecology	57
book	55
alignment	54
cancer-crosstalk	54
model	54
measurement	52
nmr	52
techniques	51
thelist	51
dna	50
diversity	49
seismology	48
algorithms	47
methodology	47
prediction	47
meg	46
methylation	45
gene-expression	43
phylogenomics	43
quantitative	42
proteomics	41
breast	40
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networks	40
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mirna	39
models	38
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likelihood	30
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sequence	29
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mixed	28
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sociology	28
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health	27
pain	27
structure	27
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astrophysics	26
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Group: FAB-lab - with tag methods [153 articles] Export

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