Group: FAB-lab - with tag phylogenomics [24 articles] Export

Recent papers posted by members of the FAB-lab group with tag phylogenomics

	Phylogenomics of primates and their ancestral populations [My Copy] Genome Research, Vol. 19, No. 11. (3 November 2009), pp. 1929-1941. by Adam Siepel posted to variability speciation sequence selection recombination primates phylogenomics genome evolution divergence databases data-mining by rvosa to the group FAB-lab on 2009-11-25 17:32:53 as along with 4 people sameersoi djkt aprasad merpublic
	The Neandertal genome and ancient DNA authenticity [My Copy] The EMBO Journal, Vol. 28, No. 17. (06 August 2009), pp. 2494-2502. by Richard E. Green, Adrian W. Briggs, Johannes Krause, et al.Kay Prufer, Hernan A. Burbano, Michael Siebauer, Michael Lachmann, Svante Paabo posted to primates phylogenomics nuclear mitochondrial methods humans hominidae genome genetics fossils divergence data-mining anthropology by rvosa to the group FAB-lab on 2009-10-06 09:58:04 as
	Pandit: a database of protein and associated nucleotide domains with inferred trees. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 12. (12 August 2003), pp. 1556-1563. by S. Whelan, P. I. de Bakker, N. Goldman posted to alignment amino-acid databases dna evolution homology likelihood methods models phylogenomics phylogeny phyloinformatics protein proteins sequence by rvosa to the group FAB-lab on 2008-12-18 02:07:34 as along with 1 person mcox
	Detecting lineage-specific adaptive evolution of brain-expressed genes in human using rhesus macaque as outgroup [My Copy] Genomics, Vol. 88, No. 6. (December 2006), pp. 745-751. by Xiao-Jing Yu, Hong-Kun Zheng, Jun Wang, Wen Wang, Bing Su posted to adaptation alignment amino-acid animals anthropology clock-like comparative data-mining divergence dna encephalization evolution genetics genome hominidae humans mammals models phylogenomics primates protein proteins proteomics rates ratio-test selection sequence-evolution by rvosa to the group FAB-lab on 2008-08-12 08:00:48 as along with 1 person kndiaye
	Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome. [My Copy] PLoS Comput Biol, Vol. 2, No. 4. (April 2006) by L. Arbiza, J. Dopazo, H. Dopazo posted to adaptation animals clock-like comparative data-mining divergence dna genetics genome hominidae humans mammals nuclear ontology phylogenomics primates protein proteins rates ratio-test selection sequence-evolution by rvosa to the group FAB-lab on 2008-08-11 03:11:43 as along with 5 people and 2 groups operon marcius jordibc hdopazo Garamonfok BioinfoCIPF SGU-CIPF
	Constrained models of evolution lead to improved prediction of functional linkage from correlated gain and loss of genes [My Copy] Bioinformatics, Vol. 23, No. 1. (1 January 2007), pp. 14-20. by Barker, Daniel, Meade, Andrew, Pagel, Mark posted to comparative genetics models networks phylogenomics by rvosa to the group FAB-lab on 2008-08-09 09:49:47 as
	Assembly rules for protein networks derived from phylogenetic-statistical analysis of whole genomes [My Copy] BMC Evolutionary Biology, Vol. 7, No. Suppl 1. (2007) by Mark Pagel, Andrew Meade, Daniel Scott posted to genome networks phylogenomics phylogeny protein statistics by rvosa to the group FAB-lab on 2008-08-09 09:25:02 as
	BranchClust: A phylogenetic algorithm for selecting gene families [My Copy] BMC Bioinformatics, Vol. 8 (10 April 2007), 120. by Maria S. Poptsova, Peter J. Gogarten posted to algorithms alignment data-mining genome homology methods phylogenomics phyloinformatics programming by rvosa to the group FAB-lab on 2008-08-08 07:02:46 as along with 4 people and 1 group GustavoLacerda cgaugain dandaman stajich Mycology
	Monophyletic Origin of Alu Elements in Primates [My Copy] Journal of Molecular Evolution, Vol. 47 (1998), pp. 172-182. by Ewa Zietkiewicz, Chantal Richer, Daniel Sinnett, Damian Labuda posted to animals bibtex-import mammals phylogenomics primates rna sequence-evolution sine vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:31 as
	Molecular Evolution of Cytochrome c Oxidase Subunit I in Primates: Is There Coevolution between Mitochondrial and Nuclear Genomes? [My Copy] Molecular Phylogenetics and Evolution, Vol. 17, No. 2. (2000), pp. 294-304. by Wei Wu, T. R. Schmidt, M. Goodman, Lawrence I. Grossman posted to animals bibtex-import dna genome mammals mitochondrial nuclear phylogenomics primates source-trees substitution-models vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as
	Cytogenetic analysis shows extensive genomic rearrangements between red howler (Alouatta seniculus Linnaeus) subspecies [My Copy] American Journal of Primatology, Vol. 35 (1995), pp. 171-183. by R. Stanyon, S. Tofanelli, M. A. Morescalchi, G. Agoramoorthy, O. A. Ryder, J. Weinberg posted to animals bibtex-import mammals phylogenomics primates vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as
	Ancient allopolyploid speciation in geinae (Rosaceae): Evidence from nuclear granule-bound starch synthase (GBSSI) gene sequences [My Copy] Systematic Biology, Vol. 52, No. 3. (2003), pp. 374-385. by J. E. E. Smedmark, T. Eriksson, R. C. Evans, C. S. Campbell posted to bibtex-import characters evolution hybridization likelihood morphology nuclear phylogenomics phylogeny plants reconstruction sequence-evolution by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as
	Taxon sampling, bioinformatics, and phylogenomics [My Copy] Systematic Biology, Vol. 52, No. 1. (2003), pp. 119-124. by M. S. Rosenberg, S. Kumar posted to bibtex-import methods phylogenomics phyloinformatics by rvosa to the group FAB-lab on 2008-02-06 23:58:23 as
	Relationships among Brown Lemurs (Eulemur fulvus) Based on Mitochondrial DNA Sequences [My Copy] Molecular Phylogenetics and Evolution, Vol. 16, No. 3. (2000), pp. 418-429. by Jennifer Pastorini, Michael R. J. Forstner, Robert D. Martin posted to animals bibtex-import lemuridae mammals mitochondrial phylogenomics phylogeny primates source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:19 as
	Nuclear Counterparts of the Cytoplasmic Mitochondrial 12S rRNA Gene: A Problem of Ancient DNA and Molecular Phylogenies [My Copy] Journal of Molecular Evolution, Vol. 40 (1995), pp. 652-657. by A. C. van der Kuyl, C. L. Kuiken, J. T. Dekker, W. R. K. Perizonius, J. Goudsmit posted to animals bibtex-import dna mammals mitochondrial nuclear phylogenomics primates vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:15 as
	Non-random association of transposable elements with duplicated genomic blocks in Arabidopsis thaliana [My Copy] Molecular Phylogenetics and Evolution, Vol. 29, No. 3. (2003), pp. 410-416. by A. L. Hughes, R. Friedman, V. Ekollu, J. R. Rose posted to bibtex-import genome phylogenomics plants reconstruction regions by rvosa to the group FAB-lab on 2008-02-06 23:58:13 as
	Preserving the Information Content of Species: Genetic Diversity, Phylogeny, and Conservation Worth [My Copy] Annual Review of Ecology and Systematics, Vol. 28 (1997), pp. 243-268. by R. H. Crozier posted to bibtex-import biodiversity conservation ecology genetics phylogenomics phylogeny by rvosa to the group FAB-lab on 2008-02-06 23:58:06 as
	Cophenetic correlation analysis as a strategy to select phylogenetically informative proteins: an example from the fungal kingdom [My Copy] BMC Evolutionary Biology, Vol. 7 (09 August 2007), 134. by Eiko E. Kuramae, Vincent Robert, Carlos Echavarri-Erasun, Teun Boekhout posted to algorithms amino-acid data-mining fungi methods phylogenomics phylogeny phyloinformatics proteins by rvosa to the group FAB-lab on 2008-02-01 11:30:06 as along with 2 people and 1 group echinotrix stajich Mycology
	Phylogenomic analysis of non-ribosomal peptide synthetases in the genus Aspergillus. [My Copy] Gene, Vol. 383 (15 November 2006), pp. 24-32. by R. A. Cramer, J. E. Stajich, Y. Yamanaka, F. S. Dietrich, W. J. Steinbach, J. R. Perfect posted to amino-acid data-mining dna methods phylogenomics proteins by rvosa to the group FAB-lab on 2008-02-01 11:22:31 as along with 1 person stajich
	Improved Consensus Network Techniques for Genome-Scale Phylogeny [My Copy] Molecular Biology and Evolution, Vol. 23, No. 5. (15 May 2006), pp. 848-855. by Barbara R. Holland, Lars S. Jermiin, Vincent Moulton posted to algorithms genome graph methods networks phylogenomics phylogeny phyloinformatics by rvosa to the group FAB-lab on 2008-02-01 11:14:28 as along with 1 person stajich
	Detecting and overcoming systematic errors in genome-scale phylogenies. [My Copy] Syst Biol, Vol. 56, No. 3. (June 2007), pp. 389-399. by N. Rodríguez-Ezpeleta, H. Brinkmann, B. Roure, N. Lartillot, B. F. Lang, H. Philippe posted to algorithms databases data-mining genome methods phylogenomics phylogeny phyloinformatics by rvosa to the group FAB-lab on 2008-02-01 11:12:39 as along with 3 people and 1 group aprasad stajich dandaman Mycology
	Genome sequence of the Brown Norway rat yields insights into mammalian evolution. [My Copy] Nature, Vol. 428, No. 6982. (1 April 2004), pp. 493-521. by R. A. Gibbs, G. M. Weinstock, M. L. Metzker, et al.D. M. Muzny, E. J. Sodergren, S. Scherer, G. Scott, D. Steffen, K. C. Worley, P. E. Burch, G. Okwuonu, S. Hines, L. Lewis, C. DeRamo, O. Delgado, S. Dugan-Rocha, G. Miner, M. Morgan, A. Hawes, R. Gill, Celera, R. A. Holt, M. D. Adams, P. G. Amanatides, H. Baden-Tillson, M. Barnstead, S. Chin, C. A. Evans, S. Ferriera, C. Fosler, A. Glodek, Z. Gu, D. Jennings, C. L. Kraft, T. Nguyen, C. M. Pfannkoch, C. Sitter, G. G. Sutton, J. C. Venter, T. Woodage, D. Smith, H. M. Lee, E. Gustafson, P. Cahill, A. Kana, L. Doucette-Stamm, K. Weinstock, K. Fechtel, R. B. Weiss, D. M. Dunn, E. D. Green, R. W. Blakesley, G. G. Bouffard, P. J. De Jong, K. Osoegawa, B. Zhu, M. Marra, J. Schein, I. Bosdet, C. Fjell, S. Jones, M. Krzywinski, C. Mathewson, A. Siddiqui, N. Wye, J. McPherson, S. Zhao, C. M. Fraser, J. Shetty, S. Shatsman, K. Geer, Y. Chen, S. Abramzon, W. C. Nierman, P. H. Havlak, R. Chen, K. J. Durbin, A. Egan, Y. Ren, X. Z. Song, B. Li, Y. Liu, X. Qin, S. Cawley, K. C. Worley, A. J. Cooney, L. M. D'Souza, K. Martin, J. Q. Wu, M. L. Gonzalez-Garay, A. R. Jackson, K. J. Kalafus, M. P. McLeod, A. Milosavljevic, D. Virk, A. Volkov, D. A. Wheeler, Z. Zhang, J. A. Bailey, E. E. Eichler, E. Tuzun, E. Birney, E. Mongin, A. Ureta-Vidal, C. Woodwark, E. Zdobnov, P. Bork, M. Suyama, D. Torrents, M. Alexandersson, B. J. Trask, J. M. Young, H. Huang, H. Wang, H. Xing, S. Daniels, D. Gietzen, J. Schmidt, K. Stevens, U. Vitt, J. Wingrove, F. Camara, M. Mar Albà, J. F. Abril, R. Guigo, A. Smit, I. Dubchak, E. M. Rubin, O. Couronne, A. Poliakov, N. Hübner, D. Ganten, C. Goesele, O. Hummel, T. Kreitler, Y. A. Lee, J. Monti, H. Schulz, H. Zimdahl, H. Himmelbauer, H. Lehrach, H. J. Jacob, S. Bromberg, J. Gullings-Handley, M. I. Jensen-Seaman, A. E. Kwitek, J. Lazar, D. Pasko, P. J. Tonellato, S. Twigger, C. P. Ponting, J. M. Duarte, S. Rice, L. Goodstadt, S. A. Beatson, R. D. Emes, E. E. Winter, C. Webber, P. Brandt, G. Nyakatura, M. Adetobi, F. Chiaromonte, L. Elnitski, P. Eswara, R. C. Hardison, M. Hou, D. Kolbe, K. Makova, W. Miller, A. Nekrutenko, C. Riemer, S. Schwartz, J. Taylor, S. Yang, Y. Zhang, K. Lindpaintner, T. D. Andrews, M. Caccamo, M. Clamp, L. Clarke, V. Curwen, R. Durbin, E. Eyras, S. M. Searle, G. M. Cooper, S. Batzoglou, M. Brudno, A. Sidow, E. A. Stone, J. C. Venter, B. A. Payseur, G. Bourque, C. López-Otín, X. S. Puente, K. Chakrabarti, S. Chatterji, C. Dewey, L. Pachter, N. Bray, V. B. Yap, A. Caspi, G. Tesler, P. A. Pevzner, D. Haussler, K. M. Roskin, R. Baertsch, H. Clawson, T. S. Furey, A. S. Hinrichs, D. Karolchik, W. J. Kent, K. R. Rosenbloom, H. Trumbower, M. Weirauch, D. N. Cooper, P. D. Stenson, B. Ma, M. Brent, M. Arumugam, D. Shteynberg, R. R. Copley, M. S. Taylor, H. Riethman, U. Mudunuri, J. Peterson, M. Guyer, A. Felsenfeld, S. Old, S. Mockrin, F. Collins, posted to animals data-mining genetics genome mammals phylogenomics rats rodents sequence vertebrates by rvosa to the group FAB-lab on 2008-02-01 11:08:27 as along with 7 people and 3 groups taroleo gjuggler aprasad ccots dchughes djkt stajich G4ID Genetics-of-Gambling Mycology
	Distinguishing protein-coding and noncoding genes in the human genome [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 49. (4 December 2007), pp. 19428-19433. by Michele Clamp, Ben Fry, Mike Kamal, et al.Xiaohui Xie, James Cuff, Michael F. Lin, Manolis Kellis, Kerstin Lindblad-Toh, Eric S. Lander posted to algorithms amino-acid animals data-mining genetics genome hominidae homology humans mammals methods phylogenomics primates proteins rna sequence vertebrates by rvosa to the group FAB-lab on 2008-02-01 11:04:06 as along with 17 people and 2 groups antonkratz jo_davies tmmurali balicea sebastien_vigneau giovanni neils stajich cjeans cabbagezs maximilianh oelemento gjuggler slroberd renatomilani gracio Ema EisenLab Mycology
	Assessing performance of orthology detection strategies applied to eukaryotic genomes. [My Copy] PLoS ONE, Vol. 2 (2007) by F. Chen, A. J. Mackey, J. K. Vermunt, D. S. Roos posted to algorithms databases data-mining genome methods phylogenomics phylogeny phyloinformatics by rvosa to the group FAB-lab on 2008-02-01 10:57:03 as along with 14 people and 2 groups richardbickerton treangen dquest cgaugain druvus icases operon indigoviolet stajich cjeans winterschlaefer bpcusack cerca natstreet EisenLab TNT

Note: You may cite this page as: http://www.citeulike.org/group/894/tag/phylogenomics

phylogenetics	79
phylogeny	70
evolution	58
methods	43
genome	41
data-mining	25
bioinformatics	24
tree	23
phyloinformatics	17
algorithms	16
fungi	15
alignment	14
protein	14
genetics	13
review	13
comparative_genomics	12
genomics	12
mammal	12
mammals	12
syntenypaper	12
bioinformatics_software	11
databases	11
evolutionary_genomics	11
systematics	11
amino-acid	10
primates	10
sequence	10
bacteria	9
animals	8
divergence	8
dna	8
hominidae	8
humans	8
orthologs	8
selection	8
taxonomy	8
hgt	7
homology	7
networks	7
orthology	7
proteins	7
supertree	7
comparative	6
congruence	6
models	6
statistics	6
synteny	6
bushes	5
ecdysozoa	5
gene_duplication	5
genome_evolution	5
homoplasy	5
metagenomics	5
protein-protein_interaction	5
rates	5
yeast	5
adaptation	4
anthropology	4
clock-like	4
co-evolution	4
drosophila	4
gene_tree	4
homo	4
human	4
likelihood	4
molecular-evolution	4
molecular-phylogenetics	4
nuclear	4
ortholog	4
phylogenetic_marker_selection	4
phylogenetic_methods	4
plant	4
rare_genomic_characters	4
ratio-test	4
rodpage	4
sapiens	4
sequence-evolution	4
speciation	4
splitstree	4
tools	4
tree_of_life	4
vertebrates	4
annotation	3
coding	3
database	3
ecology	3
endosymbiosis	3
est	3
eukaryote	3
function	3
functional	3
lateral_gene_transfer	3
life	3
ontology	3
primate	3
protein_evolution	3
proteomics	3
software	3
tol	3
whole_genome	3

Group: FAB-lab - with tag phylogenomics [24 articles] Export

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