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Group: FAB-lab - with tag phylogeny [357 articles]

Recent papers posted by members of the FAB-lab group with tag phylogeny
  • Mixture models in phylogenetic inference
    (28 April 2008)
    by Mark Pagel
    posted to bayesian markov-chains methods monte-carlo phylogeny rates substitution-models by rvosa to the group FAB-lab on 2008-08-18 02:27:00 as **
  • The Tree of Life Web Project
    Zootaxa, No. 1668. (2007), pp. 19-40.
    by David R Maddison, Katja-Sabine Schulz, Wayne P Maddison
    posted to biodiversity databases data-mining evolution phylogeny phyloinformatics taxonomy by rvosa to the group FAB-lab on 2008-08-13 01:07:30 as **
  • Cases in which Parsimony or Compatibility Methods Will be Positively Misleading
    Systematic Zoology, Vol. 27, No. 4. (1978), pp. 401-410.
    by Joseph Felsenstein
    posted to characters inference methods parsimony phylogeny by rvosa to the group FAB-lab on 2008-08-12 05:17:15 as **
  • Large punctuational contribution of speciation to evolutionary divergence at the molecular level.
    Science, Vol. 314, No. 5796. (6 October 2006), pp. 119-121.
    by M Pagel, C Venditti, A Meade
    posted to clock-like divergence dna evolution phylogeny rates speciation substitution-models by rvosa to the group FAB-lab on 2008-08-09 11:44:51 as ** along with 4 people and 1 group knaseanka brant bpcusack shikin EisenLab
  • Phylogenetic Mixture Models Can Reduce Node-Density Artifacts
    Systematic Biology, Vol. 57, No. 2. (2008), pp. 286-293.
    by Chris Venditti, Andrew Meade, Mark Pagel
    posted to inference methods models phylogeny sequence-evolution substitution-models by rvosa to the group FAB-lab on 2008-08-09 10:43:23 as ** along with 1 person aprasad
  • A Phylogenetic Mixture Model for Detecting Pattern-Heterogeneity in Gene Sequence or Character-State Data
    Systematic Biology, Vol. 53, No. 4., 571.
    by Mark Pagel, Andrew Meade
    posted to characters genetics methods models phylogeny sequence substitution-models by rvosa to the group FAB-lab on 2008-08-09 10:21:04 as ** along with 1 person taka
  • Assembly rules for protein networks derived from phylogenetic-statistical analysis of whole genomes
    BMC Evolutionary Biology, Vol. 7, No. Suppl 1. (2007)
    by Mark Pagel, Andrew Meade, Daniel Scott
    posted to genome networks phylogenomics phylogeny protein statistics by rvosa to the group FAB-lab on 2008-08-09 09:25:02 as **
  • Myxozoa, Polypodium, and the origin of the Bilateria: the phylogenetic position of Endocnidozoa in light of the rediscovery of Buddenbrockia
    Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 2. (2003), pp. 164-169.
    by J Zrzavy, V Hypsa
    posted to animals bibtex-import classification phylogeny by rvosa to the group FAB-lab on 2008-02-06 23:58:31 as **
  • notes Phylogenetic affinities of tarsier in the context of primate Alu repeats
    Molecular Phylogenetics and Evolution, Vol. 11 (1999), pp. 77-83.
    by Ewa Zietkiewicz, Chantal Richer, Damian Labuda
    posted to animals bibtex-import mammals phylogeny primates sequence-evolution vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:31 as **
  • Phylogeny of rhesus monkeys (Macaca mulatta) as revealed by mitochondrial DNA restriction enzyme analysis
    International Journal of Primatology, Vol. 14 (1993), pp. 587-605.
    by YP Zhang, LM Shi
    posted to animals bibtex-import mammals mitochondrial phylogeny primates protein restriction vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:31 as **
  • notes Mitochondrial Cytochrome b Gene Sequences of Old World Monkeys: With Special Reference on Evolution of Asian Colobines
    Primates, Vol. 39, No. 1. (1998), pp. 39-49.
    by Ya P Zhang, Oliver A Ryder
    posted to animals bibtex-import colobinae dna evolution mammals mitochondrial phylogeny primates source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:31 as **
  • notes Phylogenetic Relationships of Macaques as Inferred from Restriction Endonuclease Analysis of Mitochondrial DNA
    Folia Primatologia, Vol. 60 (1993), pp. 7-17.
    by Ya P Zhang, Shi L Ming
    posted to animals bibtex-import genetics mammals mitochondrial phylogeny polymorphism primates restriction vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:31 as **
  • notes Strepsirrhine phylogeny: Congruence of results from a mitochondrial and a nuclear gene
    American Journal of Physical Anthropology, Vol. 22 (1996)
    by AD Yoder
    posted to animals bibtex-import mammals mitochondrial nuclear phylogeny primates source-trees strepsirrhines vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:31 as **
  • notes Bayesian Phylogenetic Inference Using DNA Sequences: A Markov Chain Monte Carlo Method
    Molecular Biology and Evolution, Vol. 14, No. 7. (1997), pp. 717-724.
    by Ziheng Yang, Bruce Rannala
    posted to bayesian bibtex-import diversification extinction markov-chains monte-carlo phylogeny speciation substitution-models by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as **
  • Classification and evolution of Asian colobines
    Folia Primatologia, Vol. 60 (1993), pp. 106-117.
    by Peng Y Zhang, Ru P Liang, Nina G Jablonski
    posted to bibtex-import classification colobinae evolution morphology phylogeny taxonomy by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as **
  • The mitochondrial DNA molecule of Sumatran orangutan and a molecular proposal for two (Bornean and Sumatran) species of orangutan
    Journal of Molecular Evolution, Vol. 43 (1996), pp. 431-437.
    by X Xu, U Arnason
    posted to animals bibtex-import mammals mitochondrial phylogeny primates vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as **
  • Molecular phylogeny of the temperate herbaceous tribes of papilionoid legumes: a supertree approach
    Vol. 9 (2000), pp. 277-298.
    by MF Wojciechowski, Michael J Sanderson, KP Steele, A Liston
    edited by P Herendeen, A Bruneau
    posted to bibtex-import mrp phylogeny plants supertree by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as **
  • The phylogenetic relationships of the cyanobacterial lichens in the Lecanorales suborder Peltigerineae
    Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 5. (2003), pp. 419-431.
    by E Wiklund, M Wedin
    posted to bacteria bibtex-import classification fungi mitochondrial nuclear parsimony phylogeny weighting by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as **
  • When are phylogenetic analyses misled by convergence? A case study in Texas cave salamanders
    Systematic Biology, Vol. 52, No. 4. (2003), pp. 501-514.
    by JJ Wiens, PT Chippindale, DM Hillis
    posted to adaptation bibtex-import evolution mitochondrial morphology phylogeny protein selection by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as **
  • Missing data, incomplete taxa, and phylogenetic accuracy
    Systematic Biology, Vol. 52, No. 4. (2003), pp. 528-538.
    by JJ Wiens
    posted to bibtex-import characters data-mining fossils methods parsimony phylogeny phyloinformatics simulation by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as **
  • A novel method for economical diagnosis of cladograms under Sankoff optimization
    Cladistics, Vol. 10 (1994), pp. 207-213.
    by Ward C Wheeler, Kevin Nixon
    posted to algorithms bibtex-import methods parsimony phylogeny by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as **
  • Iterative pass optimization of sequence data
    Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 3. (2003), pp. 254-260.
    by WC Wheeler
    posted to algorithms alignment bibtex-import methods phylogeny sequence by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as **
  • Combinatorial weights in phylogenetic analysis: a statistical parsimony procedure
    Cladistics, Vol. 6 (1990), pp. 269-275.
    by Ward C Wheeler
    posted to algorithms bibtex-import methods parsimony phylogeny weighting by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as **
  • Noise
    Cladistics, Vol. 15 (1999), pp. 51-64.
    by John W Wenzel, Mark E Siddall
    posted to bibtex-import methods parsimony phylogeny by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as **
  • notes Chromosome Painting Technique Contributes to Constructions of Evolutionary Trees of Lemurs
    International Journal of Primatology, Vol. 21, No. 5. (2000), pp. 905-913.
    by S Warter, M Hauwy, Yves Rumpler
    posted to animals bibtex-import karyotyping lemuridae mammals phylogeny primates source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as **
  • rDNA difference and phylogenetic relationships of two species of golden monkeys and three species of leaf monkeys
    (1995)
    by W Wang, B Su, H Lan, YP Zhang, SY Lin, RQ Liu, AH Liu, HG Hu, YX Xie, DH Wu
    edited by WP Xia, YZ Zhang
    posted to animals bibtex-import mammals phylogeny primates vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as **
  • notes Phylogenetic Relationships among Two Species of Golden Monkey and Three Species of Leaf Monkey Inferred from rDNA Variation
    Folia Primatologia, Vol. 65 (1995), pp. 138-143.
    by Wen Wang, Bing Su, Hong Lan, Ya P Zhang, Shi Y Lin, Ai H Liu, Rui Q Liu, Wei Z Ji, Hong G Hu, You X Xie, Deng H Wu
    posted to animals bibtex-import dna mammals phylogeny primates restriction source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:29 as **
  • notes A phylogeny of Chinese leaf monkeys using mitochondrial ND3-ND4 gene sequences
    International Journal of Primatology, Vol. 18 (1997), pp. 305-320.
    by Wen Wang, Michael RJ Forstner, Ya P Zhang, Liu, Y Wei, Huang, Hong G Hu, You X Xie, Deng H Wu, Don J Melnick
    posted to animals bibtex-import dna mammals mitochondrial phylogeny primates sequence source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:29 as **
  • Comparison between phylogeny of introns and exons in primates
    Chinese Science Bulletin, Vol. 44, No. 21. (1999), pp. 1940-1946.
    by N Wang, R Chen
    posted to animals bibtex-import evolution inference mammals phylogeny primates sequence-evolution substitution-models vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:29 as **
  • Morphology versus molecules: resolution of the positions of Nymphalis, Polygonia, and related genera (Lepidoptera: Nymphalidae)
    Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 3. (2003), pp. 213-223.
    by N Wahlberg, S Nylin
    posted to animals bibtex-import classification insects invertebrates morphology phylogeny sequence taxonomy by rvosa to the group FAB-lab on 2008-02-06 23:58:29 as **
  • notes The description of a new marmoset genus, Callicebus (Callitrichinae, Primates), including its molecular phylogenetic status
    Neotropical Primates, Vol. 11 (2003), pp. 1-10.
    by MGM van Roosmalen, T van Roosmalen
    posted to animals bibtex-import classification mammals phylogeny primates taxonomy vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:29 as **
  • Rapid radiation of the Mediterranean Luciobarbus species (Cyprinidae) after the Messinian salinity crisis of the Mediterranean Sea, inferred from mitochondrial phylogenetic analysis
    Biological Journal of the Linnean Society, Vol. 80, No. 2. (2003), pp. 207-222.
    by CS Tsigenopoulos, JD Durand, E Unlu, P Berrebi
    posted to animals bibtex-import biogeography fishes mitochondrial morphology phylogeny radiation speciation vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:28 as **
  • notes The influence of phylogeny on the social behaviour of macaques (Primates : Cercopithecidae, genus Macaca)
    Ethology, Vol. 106, No. 8. (2000), pp. 713-728.
    by B Thierry, AN Iwaniuk, SM Pellis
    posted to animals behaviour bibtex-import mammals phylogeny primates reconstruction sociality vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:28 as **
  • notes 'Little Brown Lemurs' of Northern Madagascar
    Folia Primatologia, Vol. 69 (1998), pp. 379-388.
    by I Tattersall, RW Sussman
    posted to animals bibtex-import biodiversity ecology lemuridae mammals phylogeny primates source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:28 as **
  • Phylogenetic relationships of the genus Macaca inferred from DNA sequence
    (1996)
    by T Tanaka, O Takenaka
    posted to animals bibtex-import dna mammals phylogeny primates sequence vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:28 as **
  • PAUP*: phylogenetic analysis using parsimony, version 4.0b10
    (2003)
    by DL Swofford
    posted to bibtex-import likelihood parsimony phylogeny phyloinformatics software by rvosa to the group FAB-lab on 2008-02-06 23:58:28 as ** along with 1 person gjuggler
  • Molecular phylogeny of wood mice (Apodemus, Muridae) in East Asia
    Biological Journal of the Linnean Society, Vol. 80, No. 3. (2003), pp. 469-481.
    by H Suzuki, JJ Sato, K Tsuchiya, J Luo, YP Zhang, YX Wang, XL Jiang
    posted to animals bibtex-import clock-like ecology evolution mammals mice mitochondrial nuclear phylogeny radiation rodents speciation vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:28 as **
  • notes Likelihood Analysis of Phylogenetic Networks Using Directed Graphical Models
    Molecular Biology and Evolution, Vol. 17, No. 6. (2000), pp. 875-881.
    by Korbinian Strimmer, Vincent Moulton
    posted to bayesian bibtex-import evolution graph likelihood markov-chains monte-carlo networks phylogeny by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as **
  • Molecular phylogeny of the endemic Phillipine rodent Apomys (Muridae) and the dynamics of diversification in an oceanic archipelago
    Biological Journal of the Linnean Society, Vol. 80, No. 4. (2003), pp. 699-716.
    by SJ Steppan, C Zawadzki, LR Heany
    posted to animals bibtex-import biogeography diversification mammals mice phylogeny rodents vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as **
  • Ecological diversification and phylogeny of emydid turtles
    Biological Journal of the Linnean Society, Vol. 79, No. 4. (2003), pp. 577-610.
    by PR Stephens, JJ Wiens
    posted to animals bibtex-import data-mining diversification ecology evolution mitochondrial morphology phylogeny phyloinformatics specialization vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as **
  • Distributions of Tree Comparison Metrics - Some New Results
    Systematic Biology, Vol. 42, No. 2. (1993), pp. 126-141.
    by MA Steel, D Penny
    posted to algorithms bibtex-import evolution methods phylogeny topology by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as **
  • The maximum likelihood point for a phylogenetic tree is not unique
    Systematic Biology, Vol. 43 (1994), pp. 560-564.
    by MA Steel
    posted to bibtex-import likelihood methods phylogeny by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as **
  • Inferring Complex Phylogenies Using Parsimony: An Empirical Approach Using Three Large DNA Data Sets for Angiosperms
    Systematic Biology, Vol. 47, No. 1. (1998), pp. 32-42.
    by DE Soltis, PS Soltis, ME Mort, MW Chase, V Savolainen, SB Hoot, CM Morton
    posted to bibtex-import data-mining parsimony phylogeny phyloinformatics plants by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as **
  • Numerical taxonomy: The principles and practice of numerical classification.
    (1973)
    by PHA Sneath, RR Sokal
    posted to bibtex-import classification methods phylogeny taxonomy by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as **
  • The evolution of the laterophysic connection with a revised phylogeny and taxonomy of butterflyfishes (Teleostei : Chaetodontidae)
    Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 4. (2003), pp. 287-306.
    by WL Smith, JF Webb, SD Blum
    posted to animals bibtex-import characters classification fishes morphology parsimony phylogeny taxonomy vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as **
  • Ancient allopolyploid speciation in geinae (Rosaceae): Evidence from nuclear granule-bound starch synthase (GBSSI) gene sequences
    Systematic Biology, Vol. 52, No. 3. (2003), pp. 374-385.
    by JEE Smedmark, T Eriksson, RC Evans, CS Campbell
    posted to bibtex-import characters evolution hybridization likelihood morphology nuclear phylogenomics phylogeny plants reconstruction sequence-evolution by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as **
  • Amino acid vs. nucleotide characters: challenging preconceived notions
    Molecular Phylogenetics and Evolution, Vol. 24 (2002), pp. 78-90.
    by MP Simmons, H Ochoterena, JV Freudenstein
    posted to amino-acid bibtex-import characters dna methods phylogeny by rvosa to the group FAB-lab on 2008-02-06 23:58:26 as **
  • notes Primate Phylogeny: Morphological vs Molecular Results
    Molecular Phylogenetics and Evolution, Vol. 5, No. 1. (1996), pp. 102-154.
    by Jeheskel Shoshani, Colin P Groves, Elwyn L Simons, Gregg F Gunnell
    posted to animals bibtex-import characters data-mining mammals morphology phylogeny phyloinformatics primates source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:26 as **
  • A hypothesis-independent method of character weighting for cladistic analysis
    Cladistics, Vol. 5 (1989), pp. 63-86.
    by Michael J Sharkey
    posted to bibtex-import characters methods parsimony phylogeny weighting by rvosa to the group FAB-lab on 2008-02-06 23:58:26 as **
  • Supertree algorithms for ancestral divergence dates and nested taxa
    Bioinformatics, Vol. 20, No. 0. (2004), pp. 1-6.
    by C Semple, P Daniel, W Hordijk, Page, MA Steel
    posted to algorithms bibtex-import divergence methods phylogeny supertree by rvosa to the group FAB-lab on 2008-02-06 23:58:26 as **
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