Group: FAB-lab - with tag phyloinformatics [53 articles] Export

Recent papers posted by members of the FAB-lab group with tag phyloinformatics

	A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data [My Copy] Bioinformatics, Vol. 23, No. 22. (15 November 2007), pp. 3080-3087. by Lennart J. G. Post, Marco Roos, M. Scott Marshall, Roel van Driel, Timo M. Breit posted to xml software programming phyloinformatics ontology nexml dbhack1 databases data-mining by rvosa to the group FAB-lab on 2009-09-07 13:51:13 as along with 11 people allysonlister neilswainston fgibson cmzmasek thegoose2 druvus guhjy epigenetics Simplicity tharris dansullivanblk
	A Semantic Web for bioinformatics: goals, tools, systems, applications [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 4. (2008), S1. by Nicola Cannata, Michael Schroder, Roberto Marangoni, Paolo Romano posted to xml software programming phyloinformatics ontology nexml dbhack1 by rvosa to the group FAB-lab on 2009-09-07 13:49:14 as along with 7 people artaban421 cmzmasek druvus guhjy mariakmejia bootsy dansullivanblk
	Applying Semantic Web Services to Bioinformatics: Experiences Gained, Lessons Learnt [My Copy] The Semantic Web – ISWC 2004 (2004), pp. 350-364. by Phillip Lord, Sean Bechhofer, Mark D. Wilkinson, et al.Gary Schiltz, Damian Gessler, Duncan Hull, Carole Goble, Lincoln Stein posted to xml software programming phyloinformatics ontology nexml dbhack1 data-mining by rvosa to the group FAB-lab on 2009-09-07 13:46:55 as along with 3 people mjbell cmzmasek alanrw
	Biological knowledge management: the emerging role of the Semantic Web technologies. [My Copy] Briefings in Bioinformatics, Vol. 10, No. 4. (19 May 2009), pp. 392-407. by E. Antezana, M. Kuiper, V. Mironov posted to data-mining databases dbhack1 nexml phyloinformatics programming software xml by rvosa to the group FAB-lab on 2009-07-30 21:14:33 as
	Life sciences on the Semantic Web: the Neurocommons and beyond. [My Copy] Briefings in bioinformatics, Vol. 10, No. 2. (1 March 2009), pp. 193-204. by Alan Ruttenberg, Jonathan A. Rees, Matthias Samwald, M. Scott Marshall posted to data-mining databases dbhack1 methods nexml ontology phyloinformatics programming software xml by rvosa to the group FAB-lab on 2009-07-30 21:06:03 as along with 10 people and 1 group jfr Effie guhjy druvus mikel_egana ehealthgr cassj dullhunk allysonlister fgibson NaCTeM
	The ontology of biological taxa [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i313-321. by Stefan Schulz, Holger Stenzhorn, Martin Boeker posted to classification data-mining databases dbhack1 nexml phyloinformatics programming software taxonomy xml by rvosa to the group FAB-lab on 2009-07-25 01:53:20 as along with 4 people and 1 group martingerner orovellotti guhjy dullhunk Eco informatics
	PhyloExplorer: a web server to validate, explore and query phylogenetic trees [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (18 May 2009), 108. by Vincent Ranwez, Nicolas Clairon, Frederic Delsuc, et al.Saeed Pourali, Nicolas Auberval, Sorel Diser, Vincent Berry posted to algorithms biodiversity classification data-mining databases graph graphics methods phyloinformatics programming software taxonomy by rvosa to the group FAB-lab on 2009-06-27 09:11:43 as along with 1 person djkt
	Principles for a names-based cyberinfrastructure to serve all of biology [My Copy] Zootaxa, No. 1950. (2008), pp. 153-163. by David J. Patterson, Sarah Faulwetter, Alexey Shipunov posted to algorithms biodiversity classification data-mining databases phyloinformatics programming software taxonomy by rvosa to the group FAB-lab on 2009-06-09 23:07:40 as
	Initial Implementation of a Comparative Data Analysis Ontology [My Copy] Evolutionary Bioinformatics (In review) by Francisco Prosdocimi, Brandon Chisham, Enrico Pontelli, Julie D. Thompson, Arlin Stoltzfus posted to nexml ontology phyloinformatics software xml by rvosa to the group FAB-lab on 2009-05-30 06:45:34 as
	BEAST: Bayesian evolutionary analysis by sampling trees. [My Copy] BMC evolutionary biology, Vol. 7, No. 1. (08 November 2007), 214. by Alexei J. Drummond, Andrew Rambaut posted to algorithms bayesian markov-chains methods phylogeny phyloinformatics software xml by rvosa to the group FAB-lab on 2009-05-22 07:02:11 as along with 4 people lizbiogen operon druvus treangen
	A Linear-Time Majority Tree Algorithm [My Copy] Algorithms in Bioinformatics (2003), pp. 216-227. by Nina Amenta, Frederick Clarke, Katherine St. John posted to algorithms graph methods phylogeny phyloinformatics software topology by rvosa to the group FAB-lab on 2008-12-18 02:35:27 as
	Abstract A Randomized Linear-time Majority Tree Algorithm [My Copy] by Nina Amenta, Frederick Clarke, Katherine St. John posted to algorithms data-mining methods phylogeny phyloinformatics software by rvosa to the group FAB-lab on 2008-12-18 02:26:43 as
	MAXIMUM LIKELIHOOD FRAMEWORK FOR GENETIC SEQUENCE ANALYSIS [My Copy] by Sergei L. Pond posted to algorithms dna estimation inference likelihood methods models phylogeny phyloinformatics sequence-evolution substitution-models by rvosa to the group FAB-lab on 2008-12-18 02:20:48 as
	Pandit: a database of protein and associated nucleotide domains with inferred trees. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 12. (12 August 2003), pp. 1556-1563. by S. Whelan, P. I. de Bakker, N. Goldman posted to alignment amino-acid databases dna evolution homology likelihood methods models phylogenomics phylogeny phyloinformatics protein proteins sequence by rvosa to the group FAB-lab on 2008-12-18 02:07:34 as along with 1 person mcox
	The Tree of Life Web Project [My Copy] Zootaxa, No. 1668. (2007), pp. 19-40. by David R. Maddison, Katja-Sabine Schulz, Wayne P. Maddison posted to biodiversity databases data-mining evolution phylogeny phyloinformatics taxonomy by rvosa to the group FAB-lab on 2008-08-13 01:07:30 as
	BranchClust: A phylogenetic algorithm for selecting gene families [My Copy] BMC Bioinformatics, Vol. 8 (10 April 2007), 120. by Maria S. Poptsova, Peter J. Gogarten posted to algorithms alignment data-mining genome homology methods phylogenomics phyloinformatics programming by rvosa to the group FAB-lab on 2008-08-08 07:02:46 as along with 4 people and 1 group GustavoLacerda cgaugain dandaman stajich Mycology
	Relative position of the Cheirogaleidae in strepsirhine phylogeny: A comparison of morphological and molecular methods and results [My Copy] American Journal of Physical Anthropology, Vol. 94 (1994), pp. 24-46. by A. D. Yoder posted to animals bibtex-import biogeography cheirogaleidae data-mining mammals morphology phyloinformatics primates sequence strepsirrhines vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:31 as
	Missing data, incomplete taxa, and phylogenetic accuracy [My Copy] Systematic Biology, Vol. 52, No. 4. (2003), pp. 528-538. by J. J. Wiens posted to bibtex-import characters data-mining fossils methods parsimony phylogeny phyloinformatics simulation by rvosa to the group FAB-lab on 2008-02-06 23:58:30 as
	PAUP*: phylogenetic analysis using parsimony, version 4.0b10 [My Copy] (2003) by D. L. Swofford posted to bibtex-import likelihood parsimony phylogeny phyloinformatics software by rvosa to the group FAB-lab on 2008-02-06 23:58:28 as along with 1 person gjuggler
	Bio::CDAT - An Object for Evolutionary Analysis of Data [My Copy] (2006) by A. Stoltzfus, R. A. Vos, J. Reese, W. Qiu posted to alignment bibtex-import evolution inference phyloinformatics programming software by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as
	Ecological diversification and phylogeny of emydid turtles [My Copy] Biological Journal of the Linnean Society, Vol. 79, No. 4. (2003), pp. 577-610. by P. R. Stephens, J. J. Wiens posted to animals bibtex-import data-mining diversification ecology evolution mitochondrial morphology phylogeny phyloinformatics specialization vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as
	Inferring Complex Phylogenies Using Parsimony: An Empirical Approach Using Three Large DNA Data Sets for Angiosperms [My Copy] Systematic Biology, Vol. 47, No. 1. (1998), pp. 32-42. by D. E. Soltis, P. S. Soltis, M. E. Mort, et al.M. W. Chase, V. Savolainen, S. B. Hoot, C. M. Morton posted to bibtex-import data-mining parsimony phylogeny phyloinformatics plants by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as
	Primate Phylogeny: Morphological vs Molecular Results [My Copy] Molecular Phylogenetics and Evolution, Vol. 5, No. 1. (1996), pp. 102-154. by Jeheskel Shoshani, Colin P. Groves, Elwyn L. Simons, Gregg F. Gunnell posted to animals bibtex-import characters data-mining mammals morphology phylogeny phyloinformatics primates source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:26 as
	Review of morphological evidence on the phylogeny of basal Hymenoptera (Insecta), with a discussion of the ordering of characters [My Copy] Biological Journal of the Linnean Society, Vol. 79, No. 2. (2003), pp. 209-243. by S. Schulmeister posted to animals bibtex-import characters data-mining insects invertebrates methods morphology phylogeny phyloinformatics by rvosa to the group FAB-lab on 2008-02-06 23:58:25 as
	Phylogenetics of Flowering Plants Based on Combined Analysis of Plastid atpB and rbcL Gene Sequences [My Copy] Systematic Biology, Vol. 49, No. 2. (2000), pp. 306-362. by Vincent Savolainen, Mark W. Chase, Sara B. Hoot, Cynthia M. Morton, Douglas E. Soltis, Clemens Bayer posted to bibtex-import data-mining genetics phylogeny phyloinformatics plants by rvosa to the group FAB-lab on 2008-02-06 23:58:24 as
	The growth of phylogenetic information and the need for a phylogenetic database [My Copy] Systematic Biology, Vol. 42 (1993), pp. 562-568. by Michael J. Sanderson, B. Baldwin, G. Bharathan, et al.C. Campbell, D. Ferguson, J. M. Porter, C. V. Dohlen, M. F. Wojciechowski, M. J. Donoghue posted to bibtex-import databases data-mining phylogeny phyloinformatics by rvosa to the group FAB-lab on 2008-02-06 23:58:24 as
	Molecular phylogeny of the hominoids: Inferences from multiple independent DNA sequence data sets [My Copy] Molecular Biology and Evolution, Vol. 14 (1997), pp. 248-265. by Maryellen Ruvolo posted to animals bibtex-import data-mining hominidae humans mammals phyloinformatics primates vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:24 as
	Taxon sampling, bioinformatics, and phylogenomics [My Copy] Systematic Biology, Vol. 52, No. 1. (2003), pp. 119-124. by M. S. Rosenberg, S. Kumar posted to bibtex-import methods phylogenomics phyloinformatics by rvosa to the group FAB-lab on 2008-02-06 23:58:23 as
	Building phylogenies: are the big easy? [My Copy] Trends in Ecology and Evolution, Vol. 12, No. 2. (1997) by Andy Purvis, Donald L. J. Quicke posted to bibtex-import methods phylogeny phyloinformatics by rvosa to the group FAB-lab on 2008-02-06 23:58:21 as
	A modification to Baum and Ragan's method for combining phylogenetic trees [My Copy] Systematic Biology, Vol. 44, No. 2. (1995), pp. 251-255. by Andy Purvis posted to bibtex-import methods mrp phyloinformatics supertree weighting by rvosa to the group FAB-lab on 2008-02-06 23:58:21 as
	Phylogenetic data base schema [My Copy] Cladistics-the International Journal of the Willi Hennig Society, Vol. 19, No. 2. (2003), pp. 159-159. by K. C. Nixon posted to bibtex-import databases data-mining phylogeny phyloinformatics programming by rvosa to the group FAB-lab on 2008-02-06 23:58:18 as
	Sampling strategies for delimiting species: Genes, individuals, and populations in the Liolaemus elongatus-kriegi complex (Squamata : Liolaemidae) in Andean-Patagonian South America [My Copy] Systematic Biology, Vol. 52, No. 2. (2003), pp. 159-185. by M. Morando, L. J. Avila, J. W. Sites posted to animals bibtex-import biodiversity biogeography data-mining evolution lizards methods phyloinformatics population population-genetics regions speciation substitution-models taxonomy vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:18 as
	Phylogeny and evolution of calcareous sponges: Monophyly of Calcinea and Calcaronea, high level of morphological homoplasy, and the primitive nature of axial symmetry [My Copy] Systematic Biology, Vol. 52, No. 3. (2003), pp. 311-333. by M. Manuel, C. Borchiellini, E. Alivon, Y. Le Parco, J. Vacelet, Boury N. Esnault posted to animals bibtex-import characters classification data-mining evolution morphology phylogeny phyloinformatics reconstruction by rvosa to the group FAB-lab on 2008-02-06 23:58:16 as
	Mesquite: a modular system for evolutionary analysis. [My Copy] (2001) by Wayne P. Maddison, D. R. Maddison posted to alignment bibtex-import comparative data-mining evolution phylogeny phyloinformatics programming software by rvosa to the group FAB-lab on 2008-02-06 23:58:16 as
	Phylogenetic utility of the first two introns of the S7 ribosomal protein gene in African electric fishes (Mormyroidea: Teleostei) and congruence with other molecular markers [My Copy] Biological Journal of the Linnean Society, Vol. 78, No. 2. (2003), pp. 273-292. by S. Lavoue, J. P. Sullivan, C. D. Hopkins posted to animals bibtex-import data-mining fishes phylogeny phyloinformatics vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:15 as
	Type ISTS markers are more informative than cytochrome b in phylogenetic reconstruction of the Mustelidae (Mammalia : Carnivora) [My Copy] Systematic Biology, Vol. 52, No. 5. (2003), pp. 571-593. by K. P. Koepfli, R. K. Wayne posted to animals bayesian bibtex-import carnivora data-mining genetics likelihood mitochondrial nuclear parsimony phylogeny phyloinformatics vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:15 as
	A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes) [My Copy] Systematic Zoology, Vol. 38 (1989), pp. 7-25. by A. G. Kluge posted to animals bibtex-import data-mining methods phylogeny phyloinformatics vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:15 as
	Tree-length distribution skewness: an indicator of phylogenetic information [My Copy] Systematic Zoology, Vol. 40, No. 3. (1991), pp. 257-270. by John P. Huelsenbeck posted to bibtex-import characters methods phylogeny phyloinformatics topology by rvosa to the group FAB-lab on 2008-02-06 23:58:13 as
	Analyzing large data sets in reasonable times: Solutions for composite optima [My Copy] Cladistics, Vol. 15, No. 4. (1999), pp. 415-428. by P. A. Goloboff posted to algorithms bibtex-import methods parsimony phyloinformatics by rvosa to the group FAB-lab on 2008-02-06 23:58:09 as
	Identifying conflicting signal in a multigene analysis reveals a highly resolved tree: The phylogeny of Rodentia (Mammalia) [My Copy] Systematic Biology, Vol. 52, No. 5. (2003), pp. 604-617. by R. W. Debry posted to animals bayesian bibtex-import dna likelihood mammals markov-chains monte-carlo nuclear phylogeny phyloinformatics protein rodents vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:06 as
	Disparate Data Sets Resolve Squirrel Monkey (Saimiri) Taxonomy: Implications for Behavioral Ecology and Biomedial Usage [My Copy] International Journal of Primatology, Vol. 20, No. 2. (1999), pp. 237-256. by S. Boinski, S. J. Cropp posted to animals behaviour bibtex-import data-mining mammals phylogeny phyloinformatics primates source-trees speciation taxonomy vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:03 as
	Combining trees as a way of combining data sets for phylogenetic inference, and the desirability of combining gene trees [My Copy] Taxon, Vol. 41 (1992), pp. 3-10. by B. R. Baum posted to algorithms bibtex-import data-mining methods mrp phyloinformatics supertree by rvosa to the group FAB-lab on 2008-02-06 23:58:02 as
	Pan paniscus and Hominoid Phylogeny: Morphological Data, Molecular Data and 'Total Evidence' [My Copy] Folia Primatologia, Vol. 68 (1997), pp. 50-56. by Veronique Barriel posted to animals bibtex-import data-mining dna hominidae mammals morphology nuclear parsimony phylogeny phyloinformatics primates source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:02 as
	Cophenetic correlation analysis as a strategy to select phylogenetically informative proteins: an example from the fungal kingdom [My Copy] BMC Evolutionary Biology, Vol. 7 (09 August 2007), 134. by Eiko E. Kuramae, Vincent Robert, Carlos Echavarri-Erasun, Teun Boekhout posted to algorithms amino-acid data-mining fungi methods phylogenomics phylogeny phyloinformatics proteins by rvosa to the group FAB-lab on 2008-02-01 11:30:06 as along with 2 people and 1 group echinotrix stajich Mycology
	Profiling Phylogenetic Informativeness [My Copy] Systematic Biology, Vol. 56, No. 2. (2007), pp. 222-231. by Jeffrey P. Townsend posted to algorithms animals characters data-mining mammal mammals methods mice phylogeny phyloinformatics rodents vertebrates by rvosa to the group FAB-lab on 2008-02-01 11:18:23 as along with 4 people and 1 group gjuggler aprasad stajich Jporci Mycology
	Improved Consensus Network Techniques for Genome-Scale Phylogeny [My Copy] Molecular Biology and Evolution, Vol. 23, No. 5. (15 May 2006), pp. 848-855. by Barbara R. Holland, Lars S. Jermiin, Vincent Moulton posted to algorithms genome graph methods networks phylogenomics phylogeny phyloinformatics by rvosa to the group FAB-lab on 2008-02-01 11:14:28 as along with 1 person stajich
	Detecting and overcoming systematic errors in genome-scale phylogenies. [My Copy] Syst Biol, Vol. 56, No. 3. (June 2007), pp. 389-399. by N. Rodríguez-Ezpeleta, H. Brinkmann, B. Roure, N. Lartillot, B. F. Lang, H. Philippe posted to algorithms databases data-mining genome methods phylogenomics phylogeny phyloinformatics by rvosa to the group FAB-lab on 2008-02-01 11:12:39 as along with 3 people and 1 group aprasad stajich dandaman Mycology
	Heads or Tails: A Simple Reliability Check for Multiple Sequence Alignments [My Copy] Mol Biol Evol, Vol. 24, No. 6. (1 June 2007), pp. 1380-1383. by Giddy Landan, Dan Graur posted to algorithms alignment amino-acid data-mining dna methods phylogeny phyloinformatics sequence by rvosa to the group FAB-lab on 2008-02-01 11:01:06 as along with 9 people treangen druvus aprasad BioNica stajich cjeans zwang lilou mailund
	Assessing performance of orthology detection strategies applied to eukaryotic genomes. [My Copy] PLoS ONE, Vol. 2 (2007) by F. Chen, A. J. Mackey, J. K. Vermunt, D. S. Roos posted to algorithms databases data-mining genome methods phylogenomics phylogeny phyloinformatics by rvosa to the group FAB-lab on 2008-02-01 10:57:03 as along with 14 people and 2 groups richardbickerton treangen dquest cgaugain druvus icases operon indigoviolet stajich cjeans winterschlaefer bpcusack cerca natstreet EisenLab TNT
	NEXUS: An Extensible File Format for Systematic Information [My Copy] Systematic Biology, Vol. 46, No. 4. (1997), pp. 590-621. by David R. Maddison, David L. Swofford, Wayne P. Maddison posted to data-mining phyloinformatics software by rvosa to the group FAB-lab on 2007-11-29 08:27:27 as

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Result page: 1 2 Next

data-mining	39
methods	30
phylogeny	28
algorithms	27
software	26
databases	19
dbhack1	19
programming	18
phylogenomics	17
xml	16
nexml	14
genome	13
alignment	9
ontology	9
amino-acid	6
graph	6
homology	5
networks	5
biodiversity	4
classification	4
dna	4
protein	4
sequence	4
taxonomy	4
animals	3
likelihood	3
mammals	3
reconstruction	3
vertebrates	3
bayesian	2
bioinformatics	2
characters	2
clock-like	2
comparative	2
diversification	2
evolution	2
evolutionary_biology	2
fossils	2
fungi	2
graphics	2
inference	2
markov-chains	2
mice	2
models	2
phylogenetics	2
primates	2
proteins	2
rodents	2
substitution-models	2
supertree	2
topology	2
tree_comparison	2
algorithm	1
analysis	1
divergence	1
genetics	1
mammal	1
mrp	1
proteomics	1
ratio-test	1
sequence_analysis	1
statistics	1

Group: FAB-lab - with tag phyloinformatics [53 articles] Export

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