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Group: FAB-lab - with tag sequence-evolution [62 articles]

Recent papers posted by members of the FAB-lab group with tag sequence-evolution
  • Datamonkey: rapid detection of selective pressure on individual sites of codon alignments
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2531-2533.
    by Sergei LK Pond, Simon D Frost
    posted to data-mining selection sequence-evolution software substitution-models by rvosa to the group FAB-lab on 2008-08-14 00:43:38 as ** along with 2 people druvus BioNica
  • Detecting lineage-specific adaptive evolution of brain-expressed genes in human using rhesus macaque as outgroup
    Genomics, Vol. 88, No. 6. (December 2006), pp. 745-751.
    by Xiao-Jing Yu, Hong-Kun Zheng, Jun Wang, Wen Wang, Bing Su
    posted to adaptation alignment amino-acid animals anthropology clock-like comparative data-mining divergence dna encephalization evolution genetics genome hominidae humans mammals models phylogenomics primates protein proteins proteomics rates ratio-test selection sequence-evolution by rvosa to the group FAB-lab on 2008-08-12 08:00:48 as **
  • Frequent False Detection of Positive Selection by the Likelihood Method with Branch-Site Models
    Mol Biol Evol, Vol. 21, No. 7. (1 July 2004), pp. 1332-1339.
    by Jianzhi Zhang
    posted to genetics likelihood methods selection sequence-evolution substitution-models by rvosa to the group FAB-lab on 2008-08-12 04:02:24 as ** along with 1 person Garamonfok
  • Genetic variation in mRNA coding sequences of highly conserved genes
    Physiol. Genomics, Vol. 5, No. 3. (2 April 2001), pp. 113-118.
    by Ten, Jeffrey Olsen, David Housman, Frank Baas, Vince Stanton
    posted to data-mining dna genetics hominidae humans nuclear primates protein proteins sequence-evolution variability by rvosa to the group FAB-lab on 2008-08-11 03:27:36 as **
  • Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome.
    PLoS Comput Biol, Vol. 2, No. 4. (April 2006)
    by L Arbiza, J Dopazo, H Dopazo
    posted to adaptation animals clock-like comparative data-mining divergence dna genetics genome hominidae humans mammals nuclear ontology phylogenomics primates protein proteins rates ratio-test selection sequence-evolution by rvosa to the group FAB-lab on 2008-08-11 03:11:43 as ** along with 5 people and 2 groups operon marcius jordibc hdopazo Garamonfok BioinfoCIPF SGU-CIPF
  • Molecular evolution of FOXP2, a gene involved in speech and language
    Nature, Vol. 418, No. 6900. (2002), pp. 869-872.
    by Wolfgang Enard, Molly Przeworski, Simon E Fisher, Cecilia S Lai, Victor Wiebe, Takashi Kitano, Anthony P Monaco, Svante Paabo
    posted to animals genetics hominidae humans mammals primates rates rodents selection sequence sequence-evolution by rvosa to the group FAB-lab on 2008-08-10 09:57:48 as ** along with 2 people niallhaslam djkt
  • Molecular evolution of human visual pigment genes.
    Molecular biology and evolution, Vol. 6, No. 2. (March 1989), pp. 186-197.
    by S Yokoyama, R Yokoyama
    posted to evolution humans sequence-evolution substitution-models vision by rvosa to the group FAB-lab on 2008-08-10 08:06:00 as **
  • Partitioning the variation in mammalian substitution rates.
    Mol Biol Evol, Vol. 20, No. 1. (January 2003), pp. 10-17.
    by NG Smith, A Eyre-Walker
    posted to animals mammals mitochondrial nuclear rates sequence-evolution substitution-models by rvosa to the group FAB-lab on 2008-08-09 21:07:32 as ** along with 1 person mdimmic
  • Phylogenetic Mixture Models Can Reduce Node-Density Artifacts
    Systematic Biology, Vol. 57, No. 2. (2008), pp. 286-293.
    by Chris Venditti, Andrew Meade, Mark Pagel
    posted to inference methods models phylogeny sequence-evolution substitution-models by rvosa to the group FAB-lab on 2008-08-09 10:43:23 as ** along with 1 person aprasad
  • Rates of DNA sequence evolution differ between taxonomic groups
    Science, Vol. 231, No. 4744. (21 March 1986), pp. 1393-1398.
    by RJ Britten
    posted to animals clock-like divergence dna humans mammals primates rates sequence-evolution by rvosa to the group FAB-lab on 2008-08-09 07:28:06 as **
  • A Complete Neandertal Mitochondrial Genome Sequence Determined by High-Throughput Sequencing
    Cell, Vol. 134 (2008), pp. 416-426.
    by Richard E Green, Anna-Sapfo Malaspinas, Johannes Krause, Adrian W Briggs, Philip LF Johnson, Caroline Uhler, Matthias Meyer, Jeffrey M Good, Tomislav Maricic, Udo Stenzel, Kay Prüfer, Michael Siebauer, Hernán A Burbano, Michael Ronan, Jonathan M Rothberg, Michael Egholm, Pavao Rudan, Dejana Brajković, Željko Kućan, Ivan Gušić, Mårten Wikström, Liisa Laakkonen, Janet Kelso, Montgomery Slatkin, Svante Pääbo
    posted to animals anthropology dna genome hominidae humans mammals mitochondrial population-genetics primates sequence sequence-evolution by rvosa to the group FAB-lab on 2008-08-09 06:50:33 as **
  • An evaluation of the molecular clock hypothesis using mammalian DNA sequences
    Journal of Molecular Evolution, Vol. 25, No. 4. (1987), pp. 330-342.
    by Wen-Hsiung Li, Masako Tanimura, Paul Sharp
    posted to alignment animals dna evolution genetics primates rodents sequence-evolution substitution-models by rvosa to the group FAB-lab on 2008-08-09 05:56:41 as **
  • notes Monophyletic Origin of Alu Elements in Primates
    Journal of Molecular Evolution, Vol. 47 (1998), pp. 172-182.
    by Ewa Zietkiewicz, Chantal Richer, Daniel Sinnett, Damian Labuda
    posted to animals bibtex-import mammals phylogenomics primates rna sequence-evolution sine vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:31 as **
  • notes Phylogenetic affinities of tarsier in the context of primate Alu repeats
    Molecular Phylogenetics and Evolution, Vol. 11 (1999), pp. 77-83.
    by Ewa Zietkiewicz, Chantal Richer, Damian Labuda
    posted to animals bibtex-import mammals phylogeny primates sequence-evolution vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:31 as **
  • notes Unexpected Conservation of the X-Linked Color Vision Gene in Nocturnal Prosimians: Evidence from Two Bush Babies
    Journal of Molecular Evolution, Vol. 45 (1997), pp. 610-618.
    by Yi H Zhou, Hewett D Emmet, JP Ward, Wen H Li
    posted to adaptation animals bibtex-import mammals primates sequence-evolution source-trees strepsirrhines vertebrates vision by rvosa to the group FAB-lab on 2008-02-06 23:58:31 as **
  • notes Molecular evolutionary dynamics of cytochrome b in Strepsirrhine primates: the phylogenetic significance of third-position transversions
    Molecular Biology and Evolution, Vol. 13 (1996), pp. 1339-1350.
    by AD Yoder, R Vilgalys, Maryellen Ruvolo
    posted to animals bibtex-import mammals mitochondrial primates sequence-evolution strepsirrhines substitution-models vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:31 as **
  • Comparison between phylogeny of introns and exons in primates
    Chinese Science Bulletin, Vol. 44, No. 21. (1999), pp. 1940-1946.
    by N Wang, R Chen
    posted to animals bibtex-import evolution inference mammals phylogeny primates sequence-evolution substitution-models vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:29 as **
  • notes Phylogenetic relationships of the New World monkeys (Primates, Platyrrhini) based on nuclear G6PD sequences
    Molecular Phylogenetics and Evolution, Vol. 11 (1999), pp. 459-476.
    by M Von Dornum, Maryellen Ruvolo
    posted to animals bibtex-import mammals nuclear primates sequence-evolution source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:29 as **
  • notes DNA Sequence Data from Mitochondrial COII and Nuclear G6PD Loci and a Molecular Phylogeny of the New World Monkeys (Primates, Platyrrhini)
    (1997)
    by M Von Dornum
    posted to animals bibtex-import mammals mitochondrial nuclear primates sequence-evolution vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:29 as **
  • notes The virtues of gaps: Xenarthran (Edentate) monophyly supported by a unique deletion in alphaA-crystallin
    Systematic Biology, Vol. 48, No. 1. (1999), pp. 94-106.
    by MAM van Dijk, E Paradis, Francois M Catzeflis, WW de Jong
    posted to animals bibtex-import mammals primates sequence-evolution vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:29 as **
  • notes Mhc-DRB Genes and the Origin of New World Monkeys
    Molecular Phylogenetics and Evolution, Vol. 4, No. 4. (1995), pp. 408-419.
    by K Trtkova, WE Mayer, C O'Huigin, J Klein
    posted to animals bibtex-import mammals primates sequence-evolution source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:28 as **
  • notes Organization and evolution of multifunctional Ca2+/CaM-dependent protein kinase genes
    Gene, Vol. 322 (2003), pp. 17-31.
    by Robert M Tombes, Omar M Faison, JM Turbeville
    posted to amino-acid bibtex-import evolution likelihood protein sequence-evolution by rvosa to the group FAB-lab on 2008-02-06 23:58:28 as **
  • notes Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    Molecular Biology and Evolution, Vol. 10 (1993), pp. 512-526.
    by K Tamura, M Nei
    posted to animals bibtex-import hominidae mammals mitochondrial primates sequence-evolution substitution-models vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:28 as **
  • notes Marmoset phylogenetics, conservation perspectives, and evolution of the mtDNA control region
    Molecular Biology and Evolution, Vol. 14 (1997), pp. 674-684.
    by CH Tagliaro, Horacio Schneider, Maria, Iracilda Sampaio, MJ Stanhope
    posted to animals bibtex-import conservation mammals mitochondrial primates sequence-evolution source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:28 as **
  • notes Mammalian Evolution and the Interphotoreceptor Retinoid Binding Protein (IRBP) Gene: Convincing Evidence for Several Superordinal Clades
    Journal of Molecular Evolution, Vol. 43 (1996), pp. 83-92.
    by MJ Stanhope, MR Smith, Victor G Waddell, Calvin A Porter, MS Shivji, M Goodman
    posted to animals bibtex-import classification mammals primates sequence-evolution source-trees taxonomy vertebrates vision by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as **
  • Ancient allopolyploid speciation in geinae (Rosaceae): Evidence from nuclear granule-bound starch synthase (GBSSI) gene sequences
    Systematic Biology, Vol. 52, No. 3. (2003), pp. 374-385.
    by JEE Smedmark, T Eriksson, RC Evans, CS Campbell
    posted to bibtex-import characters evolution hybridization likelihood morphology nuclear phylogenomics phylogeny plants reconstruction sequence-evolution by rvosa to the group FAB-lab on 2008-02-06 23:58:27 as **
  • Adaptive evolution of color vision genes in higher primates
    Science, Vol. 269 (1995), pp. 1265-1267.
    by SK Shyue, Hewett D Emmett, HG Sperling, DM Hunt, JK Bowmaker, JD Mollon, WH Li
    posted to adaptation animals bibtex-import mammals primates sequence-evolution vertebrates vision by rvosa to the group FAB-lab on 2008-02-06 23:58:26 as **
  • notes Sequences and Evolution of Human and Squirrel Monkey Blue Opsin Genes
    Journal of Molecular Evolution, Vol. 44 (1997), pp. 378-382.
    by LC Shimmin, P Mai, Wen H Li
    posted to amino-acid animals bibtex-import mammals primates protein sequence-evolution source-trees vertebrates vision by rvosa to the group FAB-lab on 2008-02-06 23:58:26 as **
  • The human chromosome 3 gene cluster ACY1-CACNA1D-ZNF64-ATP2B2 is evolutionary conserved in Ateles paniscus chamek (Platyrrhini, Primates)
    Cytogenetic Cell Genetics, Vol. 3, No. 314-317. (1997)
    by HN Seuanez, M Lachtermacher, FC Canavez, MAM Moreira
    posted to animals bibtex-import mammals platyrrhines primates sequence-evolution vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:26 as **
  • notes Molecular Phylogeny of the New World Monkeys (Platyrrhini, Primates) Based on Two Unlinked Nuclear Genes: IRBP Intron 1 and e-Globin Sequences
    American Journal of Physical Anthropology, Vol. 100 (1996), pp. 153-179.
    by Horacio Schneider, Iracilda Sampaio, ML Harada, CML Barroso, Maria, John Czelusniak, M Goodman
    posted to animals bibtex-import cebidae evolution genetics mammals parsimony primates sequence-evolution source-trees substitution-models vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:25 as **
  • notes Molecular evolution of the COX7A gene family in primates
    Molecular Biology and Evolution, Vol. 16 (1999), pp. 619-626.
    by TR Schmidt, M Goodman, LI Grossman
    posted to animals bibtex-import mammals primates sequence-evolution source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:25 as **
  • notes Interspecific Variation at the Y-linked RPS4Y Locus in Hominoids: Implications for Phylogeny
    American Journal of Physical Anthropology, Vol. 101 (1996), pp. 333-343.
    by PB Samollow, LM Cherry, SM Witte, J Rogers
    posted to animals bibtex-import hominidae mammals primates sequence-evolution source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:24 as **
  • Evolutionary rates of insertion and deletion in noncoding nucleotide sequences of Primates
    Molecular Biology and Evolution, Vol. 11, No. 3. (1994), pp. 504-512.
    by N Saitou, S Ueda
    posted to animals bibtex-import mammals primates rates sequence-evolution substitution-models vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:24 as **
  • The questionable implications of the dopamine D-4 receptor (DRC4) gene tree for primate phylogeny
    Molecular Phylogenetics and Evolution, Vol. 5, No. 2. (1996), pp. 439-440.
    by Maryellen Ruvolo, BD Koh
    posted to animals bibtex-import mammals phylogeny primates sequence-evolution vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:24 as **
  • Baboon and Cotton-Top Tamarin b2m cDNA sequences and the evolution of primate b2-microglobulin
    Human Immunology, Vol. 39 (1994), pp. 188-194.
    by RE Ruiz, BL Hall, C Doyle, FE Ward
    posted to animals bibtex-import mammals primates sequence-evolution vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:23 as **
  • notes Evidence on primate phylogeny from e-globin gene sequences and flanking regions
    Journal of Molecular Evolution, Vol. 40 (1995), pp. 30-55.
    by Calvin A Porter, Iracilda Sampaio, Horacio Schneider, Maria, John Czelusniak, M Goodman
    posted to animals bibtex-import mammals primates sequence-evolution source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:21 as **
  • notes Phylogeny and evolution of selected primates as determined by sequences of the e-globin locus and 5' flanking regions
    International Journal of Primatology, Vol. 18 (1997), pp. 261-295.
    by Calvin A Porter, SL Page, John Czelusniak, Horacio Schneider, Maria, Iracilda Sampaio, M Goodman
    posted to animals bibtex-import mammals primates sequence-evolution source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:21 as **
  • notes Sequences From the 5' Flanking Region of the e-Globin Gene Support the Relationship of Callicebus With the Pitheciins
    American Journal of Primatology, Vol. 48 (1999), pp. 69-75.
    by Calvin A Porter, John Czelusniak, Horacio Schneider, Maria, Iracilda Sampaio, Morris Goodman
    posted to animals bibtex-import clock-like divergence dna mammals nuclear primates sequence-evolution source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:21 as **
  • notes Sequences of the primate e-globin gene: implications for systematics of the marmosets and other New World primates
    Gene, Vol. 205 (1997), pp. 59-71.
    by Calvin A Porter, John Czelusniak, Horacio Schneider, Maria, Iracilda Sampaio, M Goodman
    posted to animals bibtex-import classification mammals primates sequence-evolution source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:21 as **
  • Evolution of the tyrosinase related gene (TYRL) in primates
    Pigmental Research, Vol. 6 (1993), pp. 171-177.
    by WS Oetting, OC Stine, D Townsend, RA King
    posted to animals bibtex-import mammals primates sequence-evolution vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:18 as **
  • Fate of a redundant g-globin gene in the atelid clade of New World monkeys: Implications concerning fetal globin gene expression
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 92 (1995), pp. 2607-2611.
    by CM Meireles, MPC Schneider, MIC Sampaio, H Schneider, MJ Slightom, CH Chiu, K Neiswanger, DL Gumucio, J Czelusniak, M Goodman
    posted to animals bibtex-import mammals primates sequence-evolution vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:17 as **
  • Evolucao Molecular dos Genes Globinas Gama 1 e Gama 2 em Atelineos (Primates, Platyrrhini)
    (1997)
    by CM Meireles
    posted to animals bibtex-import evolution genetics platyrrhines primates sequence-evolution vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:17 as **
  • notes Evolution of Mhc-DRB Introns: Implications for the Origin of Primates
    Journal of Molecular Evolution, Vol. 48 (1999), pp. 663-674.
    by H Kupfermann, Y Satta, N Takahata, H Tichy, J Klein
    posted to animals bibtex-import chiroptera dna evolution genetics mammals primates sequence-evolution vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:15 as **
  • notes Evolution of Rh Blood Group Genes Have Experienced Gene Conversions and Positive Selection
    Journal of Molecular Evolution, Vol. 49 (1999), pp. 615-626.
    by T Kitano, N Saitou
    posted to animals bibtex-import mammals primates selection sequence-evolution source-trees vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:15 as **
  • Phylogenetic analysis of HERV-K LTR-like elements in primates: presence in some New World monkeys and evidence of recent parallel evolution in these species and in Homo sapiens
    Arch. Virol., Vol. 144 (1999), pp. 2035-2040.
    by HS Kim, RV Wadekar, O Takenaka, BH Hyun, TJ Crow
    posted to animals bibtex-import evolution genetics hominidae mammals platyrrhines primates sequence-evolution vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:15 as **
  • Molecular features of the TSPY gene of gibbons and Old World monkeys
    Chrom. Res., Vol. 4 (1996), pp. 500-506.
    by HS Kim, H Hirai, O Takenaka
    posted to animals bibtex-import mammals primates sequence-evolution vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:14 as **
  • notes Fetal globin expression in New World primates
    J. Biol. Chem., Vol. 271 (1996), pp. 14684-14691.
    by RM Johnson, S Buck, CH Chiu, H Schneider, Iracilda Sampaio, DA Gage, TL Shen, MPC Schneider, Jose APC Muniz, DL Gumucio, M Goodman
    posted to animals bibtex-import mammals primates sequence-evolution vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:14 as **
  • notes Origin and divergence of tandem repeats of primate D4 dopamine receptor genes
    Primates, Vol. 39, No. 2. (1998), pp. 217-224.
    by M Inouemurayama, O Takenaka, Y Murayama
    posted to animals bibtex-import divergence mammals primates sequence-evolution vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:13 as **
  • Sequence and evolution of the blue pigment gene in old and new world primates
    Genomics, Vol. 27 (1995), pp. 535-538.
    by DM Hunt, JA Cowing, R Patel, B Appukuttan, JK Bowmaker, JD Mollon
    posted to animals bibtex-import mammals primates sequence-evolution vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:13 as **
  • The g-globin genes and their flanking sequences in primates: Findings with nucleotide sequences of capuchin monkey and tarsier
    Genomics, Vol. 18 (1993), pp. 20-28.
    by K Hayasaka, CG Skinner, M Goodman, JL Slightom
    posted to animals bibtex-import genetics mammals primates sequence-evolution vertebrates by rvosa to the group FAB-lab on 2008-02-06 23:58:11 as **
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