Group: NaCTeM - library 153 articles Export

	Construction of an annotated corpus to support biomedical information extraction [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (23 October 2009), 349. by Paul Thompson, Syed Iqbal, John McNaught, Sophia Ananiadou posted to annotation by Effie to the group NaCTeM on 2009-10-25 14:48:52 as along with 3 people and 2 groups kshameer henk-cul cisevol dbmi-nlp BergmanLab
	Characterizing environmental and phenotypic associations using information theory and electronic health records [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 9. (2009), S13. by Xiaoyan Wang, George Hripcsak, Carol Friedman posted to association by Effie to the group NaCTeM on 2009-10-08 15:28:39 as along with 1 person and 1 group henk-cul dbmi-nlp
	The potential for automated question answering in the context of genomic medicine: an assessment of existing resources and properties of answers [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 9. (2009), S8. by Casey Overby, Peter T. Hornoch, Dina D. Fushman posted to question answering by Effie to the group NaCTeM on 2009-10-08 15:27:57 as
	Enhancing navigation in biomedical databases by community voting and database-driven text classification [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 317. by Timo Duchrow, Timur Shtatland, Daniel Guettler, Misha Pivovarov, Stefan Kramer, Ralph Weissleder posted to classification by Effie to the group NaCTeM on 2009-10-08 15:26:39 as along with 7 people and 1 group perkeo artaban421 lmichan daforerog cisevol druvus dullhunk BergmanLab
	BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (7 October 2009), 320. by Guillermo de la Calle, Miguel G. Remesal, Stefano Chiesa, Diana de la Iglesia, Victor Maojo posted to classification by Effie to the group NaCTeM on 2009-10-08 15:26:03 as along with 6 people and 2 groups perkeo sillitoe klauso dullhunk daforerog lmichan Orengo Group Journal Picks Bioinformatics Core Service
	Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD) [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 326. by Thomas Wiegers, Allan Davis, K. Cohen, Lynette Hirschman, Carolyn Mattingly posted to curation by Effie to the group NaCTeM on 2009-10-08 15:25:01 as
	Seeking unique and common biological themes in multiple gene lists or datasets: pathway pattern extraction pipeline for pathway-level comparative analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 200. by Ming Yi, Uma Mudunuri, Anney Che, Robert Stephens posted to pathways by Effie to the group NaCTeM on 2009-07-20 12:05:20 as along with 5 people ptrobajo shikin jmeppley renatomilani barriot
	Clique-based data mining for related genes in a biomedical database [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 205. by Tsutomu Matsunaga, Chikara Yonemori, Etsuji Tomita, Masaaki Muramatsu posted to no-tag by Effie to the group NaCTeM on 2009-07-20 12:04:40 as along with 3 people and 1 group ptrobajo daforerog ppgardne Journal picks
	Incorporating rich background knowledge for gene named entity classification and recognition [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (17 July 2009), 223. by Yanpeng Li, Hongfei Lin, Zhihao Yang posted to entities recognition by Effie to the group NaCTeM on 2009-07-20 11:55:10 as along with 2 people and 1 group henk-cul druvus dbmi-nlp
	libAnnotationSBML: a library for exploiting SBML annotations. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2292-2293. by Neil Swainston, Pedro Mendes posted to sbml by Effie to the group NaCTeM on 2009-07-15 23:50:33 as along with 7 people guhjy irenas neilswainston jonathancooper jmuhlich jvb dullhunk
	The Increasing Dominance of Teams in Production of Knowledge [My Copy] Science, Vol. 316, No. 5827. (18 May 2007), pp. 1036-1039. by Stefan Wuchty, Benjamin F. Jones, Brian Uzzi posted to author by Effie to the group NaCTeM on 2009-07-12 07:50:45 as along with 10 people and 2 groups hughesro dartar thor_bjarnason hpiwowar cmmorel dullhunk nickluscombe MariaChiaraP franzkurfess fisherp Parenting 2.0 EBI-regulation
	Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 177. by Sam Zaremba, Mila R. Santacruz, Thomas Hampton, et al.Panna Shetty, Joel Fedorko, Jon Whitmore, John Greene, Nicole Perna, Jeremy Glasner, Guy Plunkett, Matthew Shaker, David Pot posted to textmining by Effie to the group NaCTeM on 2009-07-06 23:18:35 as along with 10 people and 1 group zufar druvus behindtherabbit fgibson kiekyon leemond31 nuin liblab barriot Gaetan Journal picks
	Sentence retrieval for abstracts of randomized controlled trials [My Copy] BMC Medical Informatics and Decision Making, Vol. 9, No. 10. (2009) by Grace Y. Chung posted to crf sectioning summarization zoning by bjrea to the group NaCTeM on 2009-06-09 13:35:13 as
	The effects of very early Alzheimer's disease on the characteristics of writing by a renowned author [My Copy] Brain, Vol. 128, No. 2. (February 2005), 250. by Peter Garrard, Lisa M. Maloney, John R. Hodges, Karalyn Patterson posted to ad nlp by Effie to the group NaCTeM on 2009-06-09 08:08:16 as
	CRONOS: the cross-reference navigation server. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 1. (1 January 2009), pp. 141-143. by B. Waegele, I. Dunger-Kaltenbach, G. Fobo, C. Montrone, H. W. Mewes, A. Ruepp posted to search by Effie to the group NaCTeM on 2009-05-29 14:18:22 as along with 2 people guhjy nuin
	Issues in learning an ontology from text [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 5. (2009), S1. by Christopher Brewster, Simon Jupp, Joanne Luciano, David Shotton, Robert Stevens, Ziqi Zhang posted to ontology terminology by Effie to the group NaCTeM on 2009-05-28 14:19:02 as along with 5 people maximilianh guhjy allysonlister fgibson dullhunk
	Inferring novel disease indications for known drugs by semantically linking drug action and disease mechanism relationships [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 5. (2009), S4. by Xiaoyan Qu, Ranga Gudivada, Anil Jegga, Eric Neumann, Bruce Aronow posted to association mining by Effie to the group NaCTeM on 2009-05-28 14:17:01 as along with 3 people axramos Scis0000002 guhjy
	Open Biomedical Ontology-based Medline exploration. [My Copy] BMC bioinformatics, Vol. 10 Suppl 5 (2009) by Weijian Xuan, Manhong Dai, Barbara Mirel, et al.Jean Song, Brian Athey, Stanley J. Watson, Fan Meng posted to ontology by Effie to the group NaCTeM on 2009-05-28 14:16:17 as along with 4 people allysonlister fgibson dullhunk guhjy
	Text mining in healthcare. Applications and opportunities. [My Copy] Journal of healthcare information management : JHIM, Vol. 22, No. 3. (2008), pp. 52-56. by U. Raja, T. Mitchell, T. Day, J. M. Hardin posted to textmining by Effie to the group NaCTeM on 2009-05-26 08:46:18 as along with 2 people and 1 group liblab henk-cul dbmi-nlp
	Learning the k in k-means [My Copy] Advances in Neural Information Processing Systems, Vol. 16 (2003) by G. Hamerly, C. Elkan posted to clustering clusters g-means gaussian k-means number of by bjrea to the group NaCTeM on 2009-05-12 19:53:54 as
	Wnt pathway curation using automated natural language processing: combining statistical methods with partial and full parse for knowledge extraction [My Copy] Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1653-1658. by Carlos Santos, Daniela Eggle, David States posted to pathway by Effie to the group NaCTeM on 2009-05-10 18:43:37 as
	Supporting Systematic Reviews Using Text Mining [My Copy] Social Science Computer Review (20 April 2009), 0894439309332293. by Sophia Ananiadou, Brian Rea, Naoaki Okazaki, Rob Procter, James Thomas posted to reviews systematic textmining by Effie to the group NaCTeM on 2009-05-07 23:24:24 as
	Ontology-driven indexing of public datasets for translational bioinformatics [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 2. (2009), S1. by Nigam Shah, Clement Jonquet, Annie Chiang, Atul Butte, Rong Chen, Mark Musen posted to ontology by Effie to the group NaCTeM on 2009-05-06 06:25:01 as along with 5 people mitko guhjy fordparsons daforerog gilesvelarde
	U-Compare: share and compare text mining tools with UIMA [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1997-1998. by Yoshinobu Kano, William A. Baumgartner, Luke Mccrohon, et al.Sophia Ananiadou, K. Bretonnel Cohen, Lawrence Hunter, Jun'ichi Tsujii posted to uima by Effie to the group NaCTeM on 2009-05-05 19:24:55 as along with 11 people and 1 group artaban421 fgibson satre lmichan mitko daforerog martingerner operon guhjy henk-cul dullhunk dbmi-nlp
	Life sciences on the Semantic Web: the Neurocommons and beyond. [My Copy] Briefings in bioinformatics, Vol. 10, No. 2. (1 March 2009), pp. 193-204. by Alan Ruttenberg, Jonathan A. Rees, Matthias Samwald, M. Scott Marshall posted to semantic web by Effie to the group NaCTeM on 2009-05-05 18:22:58 as along with 10 people and 1 group jfr rvosa guhjy druvus mikel_egana ehealthgr cassj dullhunk allysonlister fgibson FAB-lab
	Literature mining in support of drug discovery [My Copy] Brief Bioinform, Vol. 9, No. 6. (1 November 2008), pp. 479-492. by Pankaj Agarwal, David B. Searls posted to textmining by Effie to the group NaCTeM on 2009-04-22 08:45:19 as along with 4 people abhishek_tiwari nuin guhjy dullhunk
	Robust relational parsing over biomedical literature: extracting inhibit relations. [My Copy] Pac Symp Biocomput (2002), pp. 362-373. by J. Pustejovsky, J. Castaño, J. Zhang, M. Kotecki, B. Cochran posted to biomedical ie by pault to the group NaCTeM on 2009-04-21 14:19:18 as along with 3 people and 2 groups henk-cul helliontroy zlu dbmi-nlp biomedical-nlp
	Automated extraction of information on protein-protein interactions from the biological literature. [My Copy] Bioinformatics, Vol. 17, No. 2. (February 2001), pp. 155-161. by T. Ono, H. Hishigaki, A. Tanigami, T. Takagi posted to extraction ppi by pault to the group NaCTeM on 2009-04-21 14:15:01 as along with 9 people and 3 groups arafalov irenas yas blackbart helliontroy zlu bundschu satre yggdrasil T_lab biomedical-nlp generif_paper
	GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles [My Copy] by Carol Friedman posted to no-tag by pault to the group NaCTeM on 2009-04-21 12:22:22 as
	Mining Medline: Abstracts, Sentences, Or Phrases? [My Copy] (2002) by J. Ding, D. Berleant, D. Nettleton, E. Wurtele posted to no-tag by pault to the group NaCTeM on 2009-04-21 11:56:21 as along with 1 person martingerner
	Comparative experiments on learning information extractors for proteins and their interactions [My Copy] Artificial Intelligence in Medicine, Vol. 33, No. 2. (February 2005), pp. 139-155. by Razvan Bunescu, Ruifang Ge, Rohit J. Kate, et al.Edward M. Marcotte, Raymond J. Mooney, Arun K. Ramani, Yuk W. Wong posted to extraction ppi by pault to the group NaCTeM on 2009-04-21 11:39:31 as along with 5 people and 2 groups yas bundschu hellionbiz bhaddow balex T_lab generif_paper
	Comparative analysis of five protein-protein interaction corpora [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 3. (2008), S6. by Sampo Pyysalo, Antti Airola, Juho Heimonen, Jari Bjorne, Filip Ginter, Tapio Salakoski posted to annotation ppi by pault to the group NaCTeM on 2009-04-21 11:33:47 as along with 10 people and 2 groups martingerner satre farzanehs guhjy laughcry kluck vlachmore aprildh31 anthropomorphism gilesc BioInfPDL Proteasome
	GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data. [My Copy] J Biomed Inform, Vol. 37, No. 1. (February 2004), pp. 43-53. by A. Rzhetsky, I. Iossifov, T. Koike, et al.M. Krauthammer, P. Kra, M. Morris, H. Yu, P. A. Duboué, W. Weng, W. J. Wilbur, V. Hatzivassiloglou, C. Friedman posted to extraction pathway visualisation by Effie to the group NaCTeM on 2009-04-18 02:51:48 as along with 5 people and 2 groups yas wnpx zlu bundschu bhaddow T_lab generif_paper
	Fast max-margin clustering for unsupervised word sense disambiguation in biomedical texts [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 3. (2009), S4. by Weisi Duan, Min Song, Alexander Yates posted to wsd by Effie to the group NaCTeM on 2009-04-18 02:40:17 as along with 1 person mitko
	Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies? [My Copy] Brief Bioinform, Vol. 9, No. 6. (1 November 2008), pp. 466-478. by Rainer Winnenburg, Thomas Wachter, Conrad Plake, Andreas Doms, Michael Schroeder posted to curation textmining by Effie to the group NaCTeM on 2009-04-18 02:32:40 as along with 7 people daforerog abhishek_tiwari Keywan skap guhjy Cortel druvus
	Overview of the protein-protein interaction annotation extraction task of BioCreative II [My Copy] Genome Biology, Vol. 9, No. Suppl 2. (2008), S4. by Martin Krallinger, Florian Leitner, Carlos R. Penagos, Alfonso Valencia posted to annotation ppi by Effie to the group NaCTeM on 2009-04-18 02:31:36 as along with 2 people satre farzanehs
	PreBIND and Textomy--mining the biomedical literature for protein-protein interactions using a support vector machine. [My Copy] BMC Bioinformatics, Vol. 4 (27 March 2003) by I. Donaldson, J. Martin, B. de Bruijn, et al.C. Wolting, V. Lay, B. Tuekam, S. Zhang, B. Baskin, G. D. Bader, K. Michalickova, T. Pawson, C. W. Hogue posted to ppi by Effie to the group NaCTeM on 2009-04-18 02:30:33 as along with 5 people and 1 group henk-cul chad_davis blackbart satre bouncingbudha dbmi-nlp
	BIOSMILE: A semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features [My Copy] BMC Bioinformatics, Vol. 8 (01 September 2007), 325. by Richard T. Tsai, Wen-Chi Chou, Ying-Shan Su, et al.Yu-Chun Lin, Cheng-Lung Sung, Hong-Jie Dai, Irene T. Yeh, Wei Ku, Ting-Yi Sung, Wen-Lian Hsu posted to labeling role semantic by Effie to the group NaCTeM on 2009-04-18 02:27:32 as along with 6 people and 1 group vlachmore yas mircea Barend guhjy irenas T_lab
	An intelligent search engine and GUI-based efficient MEDLINE search tool based on deep syntactic parsing [My Copy] In Proceedings of the COLING/ACL on Interactive presentation sessions (2006), pp. 17-20. by Tomoko Ohta, Yoshimasa Tsuruoka, Jumpei Takeuchi, et al.Jin-Dong Kim, Yusuke Miyao, Akane Yakushiji, Kazuhiro Yoshida, Yuka Tateisi, Takashi Ninomiya, Katsuya Masuda, Tadayoshi Hara, Jun'ichi Tsujii posted to parsing search by Effie to the group NaCTeM on 2009-04-18 02:25:41 as along with 2 people yas mircea
	Semantic retrieval for the accurate identification of relational concepts in massive textbases [My Copy] In ACL '06: Proceedings of the 21st International Conference on Computational Linguistics and the 44th annual meeting of the ACL (2006), pp. 1017-1024. by Yusuke Miyao, Tomoko Ohta, Katsuya Masuda, et al.Yoshimasa Tsuruoka, Kazuhiro Yoshida, Takashi Ninomiya, Jun'ichi Tsujii posted to parsing relations search by Effie to the group NaCTeM on 2009-04-18 02:24:56 as along with 2 people yas mircea
	PubMed related articles: a probabilistic topic-based model for content similarity [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Jimmy Lin, John W. Wilbur posted to content similarity by Effie to the group NaCTeM on 2009-04-18 02:23:56 as along with 9 people artaban421 jarek guhjy dullhunk msampson Gaetan barriot A_Hoogendam yas
	MiSearch Adaptive PubMed Search Tool. [My Copy] Bioinformatics (6 March 2008) by David J J. States, Alex S S. Ade, Zachary C C. Wright, Aaron V V. Bookvich, Brian D D. Athey posted to search by Effie to the group NaCTeM on 2009-04-18 02:23:16 as along with 4 people guhjy dullhunk Gaetan yas
	The strength of co-authorship in gene name disambiguation [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (29 January 2008), 69. by Richard Farkas posted to disambiguartion entities by Effie to the group NaCTeM on 2009-04-18 02:21:45 as along with 3 people martingerner akastrin yas
	Anne O'Tate: A tool to support user-driven summarization, drill-down and browsing of PubMed search results [My Copy] Journal of Biomedical Discovery and Collaboration, Vol. 3 (15 February 2008), 2. by Neil R. Smalheiser, Wei Zhou, Vetle I. Torvik posted to pubmed summarisation by Effie to the group NaCTeM on 2009-04-18 02:21:03 as along with 7 people mitko A_Hoogendam Enro guhjy Gaetan spinaltap526 yas
	A critical review of PASBio's argument structures for biomedical verbs [My Copy] BMC Bioinformatics, Vol. 7, No. Suppl 3. (2006) by Bretonnel K. Cohen, Lawrence Hunter posted to relation role semantic by Effie to the group NaCTeM on 2009-04-18 02:19:47 as along with 2 people satre yas
	OpenDMAP: An open-source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-specific gene expression [My Copy] BMC Bioinformatics, Vol. 9 (31 January 2008), 78. by Lawrence Hunter, Zhiyong Lu, James Firby, et al.William A. Baumgartner, Helen L. Johnson, Philip V. Ogren, Bretonnel K. Cohen posted to biocreative ontology by Effie to the group NaCTeM on 2009-04-18 02:17:16 as along with 6 people and 1 group druvus sobolevnrm thomaskelder guhjy satre yas baker-group
	Seeking a new biology through text mining. [My Copy] Cell, Vol. 134, No. 1. (11 July 2008), pp. 9-13. by Andrey Rzhetsky, Michael Seringhaus, Mark Gerstein posted to data deluge by Effie to the group NaCTeM on 2009-04-18 02:16:29 as along with 18 people and 1 group artaban421 daforerog thegoose2 Scis0000002 martingerner pick600 lesikv ajaymalik cisevol jfr yas icq242500260 pzoot guhjy bootsy fgibson dullhunk tharris BergmanLab
	Nominalization and alternations in biomedical language. [My Copy] PLoS ONE, Vol. 3, No. 9. (2008) by K. B. Cohen, M. Palmer, L. Hunter posted to normalisation by Effie to the group NaCTeM on 2009-04-18 02:15:35 as along with 3 people and 1 group henk-cul vlachmore yas dbmi-nlp
	Using MEDLINE as a knowledge source for disambiguating abbreviations and acronyms in full-text biomedical journal articles. [My Copy] J Biomed Inform (7 June 2006) by Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W John J. Wilbur posted to acronym dictionary disambiguartion by Effie to the group NaCTeM on 2009-04-18 02:14:42 as along with 3 people and 1 group yas helliontroy Gaetan biomedical-nlp
	Learning to extract relations for protein annotation. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007) by J. H. Kim, A. Mitchell, T. K. Attwood, M. Hilario posted to annotation extraction by Effie to the group NaCTeM on 2009-04-18 02:13:53 as along with 3 people and 1 group eesruiz robert85 yas ImagCom - Biomedical Text Computing

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file-import-09-04-16	23
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Group: NaCTeM - library 153 articles Export

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