BMC Bioinformatics - Latest Articles Export

Articles from the last few issues of BMC Bioinformatics - Latest Articles

	RNA folding on the 3D triangular lattice [My Copy] BMC Bioinformatics, Vol. 10 (05 November 2009), 369. by Joel Gillespie, Martin Mayne, Minghui Jiang
	A biosegmentation benchmark for evaluation of bioimage analysis methods [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 368. by Elisa D. Gelasca, Boguslaw Obara, Dmitry Fedorov, Kristian Kvilekval, B. Manjunath posted by 1 person erexhepa
	GLIDERS - A web-based search engine for genome-wide linkage disequilibrium between HapMap SNPs [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 367. by Robert Lawrence, Aaron D. Williams, Richard Mott, John Broxholme, Lon Cardon, Eleftheria Zeggini posted by 2 people kshameer daforerog
	(PS)2-v2: template-based protein structure prediction server [My Copy] BMC Bioinformatics, Vol. 10 (31 October 2009), 366. by Chih-Chieh Chen, Jenn-Kang Hwang, Jinn-Moon Yang
	Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (30 October 2009), 365. by Stefano Lise, Cedric Archambeau, Massimiliano Pontil, David Jones posted by 6 people apaydin kshameer zwang phoenixzxl higueruelo neils
	multiplierz: an extensible API based desktop environment for proteomics data analysis. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (29 October 2009), 364. by Jignesh R. Parikh, Manor Askenazi, Scott B. Ficarro, et al.Tanya Cashorali, James T. Webber, Nathaniel C. Blank, Yi Zhang, Jarrod A. Marto posted by 2 people renatomilani neilswainston
	A novel R-package graphic user interface for the analysis of metabonomic profiles. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (29 October 2009), 363. by Jose L. Izquierdo-Garcia, Ignacio Rodriguez, Angelos Kyriazis, et al.Palmira Villa, Pilar Barreiro, Manuel Desco, Jesus Ruiz-Cabello
	BARCRAWL and BARTAB: Software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 October 2009), 362. by Daniel Frank posted by 6 people natstreet druvus MarkFiers Journal picks ppgardne heliopais
	Predicting sulfotyrosine sites using the random forest algorithm with significantly improved prediction accuracy [My Copy] BMC Bioinformatics, Vol. 10 (29 October 2009), 361. by Zheng R. Yang
	Inferring within-patient HIV-1 evolutionary dynamics under anti-HIV therapy using serial virus samples with vSPA. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (29 October 2009), 360. by Naoki Hasegawa, Wataru Sugiura, Junko Shibata, Masakazu Matsuda, Fengrong Ren, Hiroshi Tanaka posted by 2 people Orengo Group Journal Picks sillitoe
	Analysis and comparison of very large metagenomes with fast clustering and functional annotation [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 359. by Weizhong Li posted by 5 people ramonvidal Journal picks ppgardne kshameer neils
	ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 358. by Enrico Glaab, Jonathan Garibaldi, Natalio Krasnogor posted by 4 people Bioinformatics dswan heliopais neils
	AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses [My Copy] BMC Bioinformatics, Vol. 10 (28 October 2009), 357. by Surendra Kumar, Asmund Skjaeveland, Russell Orr, et al.Pal Enger, Torgeir Ruden, Bjorn-Helge Mevik, Fabien Burki, Andreas Botnen, Kamran Shalchian-Tabrizi
	phyloXML: XML for evolutionary biology and comparative genomics [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 356. by Mira Han, Christian Zmasek posted by 8 people operon BergmanLab cisevol kshameer Geknitics druvus phoenixzxl cmzmasek
	Stratification of co-evolving genomic groups using ranked phylogenetic profiles [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 355. by Shiri Freilich, Leon Goldovsky, Assaf Gottlieb, Eric Blanc, Sophia Tsoka, Christos Ouzounis posted by 4 people CLH_1865 Mycology stajich druvus
	Integrating functional genomics data using maximum likelihood based simultaneous component analysis. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (16 October 2009), 340. by Robert A. van den Berg, Iven Van Mechelen, Tom F. Wilderjans, Katrijn Van Deun, Henk A. Kiers, Age K. Smilde posted by 4 people Orengo Group Journal Picks sillitoe ptrobajo ashishanand
	Transcription factor site dependencies in human, mouse and rat genomes [My Copy] BMC Bioinformatics, Vol. 10 (16 October 2009), 339. by Andrija Tomovic, Michael Stadler, Edward Oakeley
	Predicting dihedral angle probability distributions for protein coil residues from primary sequence using neural networks [My Copy] BMC Bioinformatics, Vol. 10 (16 October 2009), 338. by Glennie Helles, Rasmus Fonseca
	Classification and biomarker identification using gene network modules and support vector machines. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (15 October 2009), 337. by Malik Yousef, Mohamed Ketany, Larry Manevitz, Louise C. Showe, Michael K. Showe posted by 6 people Orengo Group Journal Picks sillitoe ptrobajo ashishanand manduca frohike
	A Permutation-Based Multiple Testing Method for Time-Course Microarray Experiments [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 336. by Insuk Sohn, Kouros Owzar, Stephen George, Sujong Kim, Sin H. Jung posted by 4 people ashishanand manduca trogdor owhitney
	Clustering of protein domains for functional and evolutionary studies. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 335. by Pavle Goldstein, Jurica Zucko, Dusica Vujaklija, et al.Anita Krisko, Daslav Hranueli, Paul F. Long, Catherine Etchebest, Bojan Basrak, John Cullum posted by 8 people Orengo Group Journal Picks sillitoe kshameer druvus Journal picks ppgardne zwang phoenixzxl
	Magallanes: a web services discovery and automatic workflow composition tool [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (15 October 2009), 334. by Javier Rios, Johan Karlsson, Oswaldo Trelles posted by 11 people Orengo Group Journal Picks sillitoe Journal picks ppgardne perkeo Geknitics ronbun_2009au cory_ko barriot dullhunk druvus
	Phylogenetic analysis of modularity in protein interaction networks. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (14 October 2009), 333. by Sinan Erten, Xin Li, Gurkan Bebek, Jing Li, Mehmet Koyutürk posted by 10 people Orengo Group Journal Picks sillitoe biomcgary Journal picks ppgardne grahamc zwang druvus barriot phoenixzxl
	STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 332. by Daniel Jupiter, Hailin Chen, Vincent VanBuren posted by 7 people Orengo Group Journal Picks sillitoe rcr1991 trogdor rdiaz druvus torfinnnome
	ConservedPrimers 2.0: A high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 331. by Frank You, Naxin Huo, Yong Gu, Gerard Lazo, Jan Dvorak, Olin Anderson posted by 2 people Bioinformatics Core Service druvus
	BASE - 2nd generation software for microarray data management and analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 330. by Johan V. Christersson, Nicklas Nordborg, Martin Svensson, Jari Hakkinen posted by 7 people dswan Orengo Group Journal Picks sillitoe heliopais daforerog druvus torfinnnome
	PLAST: parallel local alignment search tool for database comparison [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 329. by Van H. Nguyen, Dominique Lavenier posted by 7 people reyez BergmanLab polivares Journal picks ppgardne installe druvus
	miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (12 October 2009), 328. by Wei C. Wang, Feng M. Lin, Wen C. Chang, Kuan Y. Lin, Hsien Da Huang, Na S. Lin posted by 7 people mmartin GeeSharpMinor ealloza natstreet microRNA heliopais druvus
	VANLO - Interactive visual exploration of aligned biological networks. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (12 October 2009), 327. by Steffen Brasch, Lars Linsen, Georg Fuellen posted by 2 people grahamc druvus
	Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD) [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 326. by Thomas Wiegers, Allan Davis, K. Cohen, Lynette Hirschman, Carolyn Mattingly posted by 2 people NaCTeM Effie
	Riboswitch detection using profile Hidden Markov Models [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (08 October 2009), 325. by Payal Singh, Pradipta Bandyopadhyay, Sudha Bhattacharya, A. Krishnamachari, Supratim Sengupta posted by 3 people Mycology stajich reyez
	KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (08 October 2009), 324. by Konstantinos Moutselos, Ioannis Kanaris, Aristotelis Chatziioannou, Ilias Maglogiannis, Fragiskos N. Kolisis posted by 8 people Orengo Group Journal Picks sillitoe trogdor druvus ptrobajo dullhunk reyez renatomilani
	A stochastic context free grammar based framework for analysis of protein sequences. [My Copy] BMC bioinformatics, Vol. 10 (08 October 2009), 323. by Witold Dyrka, Jean-Christophe C. Nebel posted by 2 people Orengo Group Journal Picks sillitoe
	Deterministic Effects Propagation Networks for reconstructing protein signaling networks from multiple interventions [My Copy] BMC Bioinformatics, Vol. 10 (08 October 2009), 322. by Holger Froehlich, Oezguer Sahin, Dorit Arlt, Christian Bender, Tim Beissbarth
	Discovering multiple realistic TFBS motifs based on a generalized model. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (7 October 2009), 321. by Tak-Ming M. Chan, Gang Li, Kwong-Sak S. Leung, Kin-Hong H. Lee posted by 3 people idonaldson maximilianh ashishanand
	BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (7 October 2009), 320. by Guillermo de la Calle, Miguel G. Remesal, Stefano Chiesa, Diana de la Iglesia, Victor Maojo posted by 10 people perkeo Orengo Group Journal Picks sillitoe Bioinformatics Core Service klauso dullhunk daforerog NaCTeM Effie lmichan
	Generation of Gene Ontology benchmark datasets with various types of positive signal. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (07 October 2009), 319. by Petri Törönen, Petri Pehkonen, Liisa Holm posted by 2 people Orengo Group Journal Picks sillitoe
	Kavosh: a new algorithm for finding network motifs [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 318. by Zahra Razaghi Moghadam Kashani, Hayedeh Ahrabian, Elahe Elahi, et al.Abbas N. Dalini, Elnaz S. Ansari, Sahar Asadi, Shahin Mohammadi, Falk Schreiber, Ali M. Nejad posted by 2 people ashishanand poirel
	Enhancing navigation in biomedical databases by community voting and database-driven text classification [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 317. by Timo Duchrow, Timur Shtatland, Daniel Guettler, Misha Pivovarov, Stefan Kramer, Ralph Weissleder posted by 10 people perkeo artaban421 NaCTeM Effie lmichan daforerog BergmanLab cisevol druvus dullhunk
	Unsupervised statistical clustering of environmental shotgun sequences [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 316. by Andrey Kislyuk, Srijak Bhatnagar, Jonathan Dushoff, Joshua Weitz posted by 3 people dakelley druvus BioInfoCites
	Sparse canonical correlation analysis for identifying, connecting and completing gene-expression networks [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 315. by Sandra Waaijenborg, Aeilko Zwinderman posted by 4 people mayercd dipenps rdiaz neils
	MetaTM - a consensus method for transmembrane protein topology prediction. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 314. by Martin Klammer, David N. Messina, Thomas Schmitt, Erik L. Sonnhammer posted by 5 people Orengo Group Journal Picks sillitoe Bioinformatics Core Service jforment Journal picks
	Social tagging in the life sciences: characterizing a new metadata resource for bioinformatics [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 313. by Benjamin Good, Joseph Tennis, Mark Wilkinson posted by 35 people Zotero en español jalonsoarevalo perkeo applebyb artaban421 alhoori dswan heliopais metatheory kevinemamy sstose UNFCCC STS Integrative Expertise for Global Health CBD Convention on Biological Diversity jago bbrunelle lyss klauso Journal picks daforerog meikipp nuin thegoose mikel_egana allysonlister Gaetan dullhunk fgibson druvus FAB-lab rvosa egonw BergmanLab cisevol
	Predicting protein-protein binding sites in membrane proteins. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 312. by Andrew J. Bordner posted by 6 people Orengo Group Journal Picks sillitoe hryk niallhaslam reyez neils
	Challenges for automatically extracting molecular interactions from full-text articles [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 311. by Tara McIntosh, James Curran posted by 6 people erikv robert85 lmichan daforerog BergmanLab cisevol
	Basic properties and information theory of Audic-Claverie statistic for analyzing cDNA arrays [My Copy] BMC Bioinformatics, Vol. 10 (23 September 2009), 310. by Peter Tino
	SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (23 September 2009), 309. by Damian Gessler, Gary Schiltz, Greg May, et al.Shulamit Avraham, Christopher Town, David Grant, Rex Nelson posted by 9 people perkeo ekrsulov egonw reyez dullhunk druvus dswan allysonlister barriot
	Detection of recurrent copy number alterations in the genome: taking among-subject heterogeneity seriously [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (23 September 2009), 308. by Oscar Rueda, Ramon D. Uriarte posted by 2 people frohike rdiaz
	Robust extraction of functional signals from gene set analysis using a generalized threshold free scoring function [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (23 September 2009), 307. by Petri Toronen, Pauli Ojala, Pekka Marttinen, Liisa Holm posted by 3 people shikin antonkratz barriot
	A methodology for the analysis of differential coexpression across the human lifespan [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (22 September 2009), 306. by Jesse Gillis, Paul Pavlidis posted by 1 person ptrobajo

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