BMC Bioinformatics - Latest Articles Export

Articles from the last few issues of BMC Bioinformatics - Latest Articles

	iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 390. by Gernot Stocker, Maria Fischer, Dietmar Rieder, et al.Gabriela Bindea, Simon Kainz, Michael Oberstolz, James McNally, Zlatko Trajanoski posted by 4 people Bioinformatics Core Service jforment druvus GeeSharpMinor
	A comprehensive sensitivity analysis of microarray breast cancer classification under feature variability [My Copy] BMC Bioinformatics, Vol. 10 (26 November 2009), 389. by Herman Sontrop, Perry Moerland, Rene van den Ham, Marcel Reinders, Wim Verhaegh
	DISPARE: DIScriminative PAttern REfinement for Position Weight Matrices [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 388. by Isabelle da Piedade, Man Hung Eric Tang, Olivier Elemento posted by 2 people barriot bedo
	Modeling lymphocytes homing and encounters in lymph nodes [My Copy] BMC Bioinformatics, Vol. 10 (25 November 2009), 387. by Valentina Baldazzi, Paola Paci, Massimo Bernaschi, Filippo Castiglione
	Identifying quantitative operation principles in metabolic pathways: a systematic method for searching feasible enzyme activity patterns leading to cellular adaptive responses. [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 386. by Gonzalo G. Gosalbez, Albert Sorribas posted by 2 people karthikraman renatomilani
	Automated vocabulary discovery for geo-parsing online epidemic intelligence [My Copy] BMC Bioinformatics, Vol. 10 (24 November 2009), 385. by Mikaela Keller, Clark Freifeld, John Brownstein
	Regularized estimation of large-scale gene association networks using graphical Gaussian models [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 384. by Nicole Kramer, Juliane Schafer, Anne L. Boulesteix posted by 1 person karthikraman
	Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 383. by Valentin R. Rubio, Olivier Poch, Julie Thompson posted by 2 people Journal picks ppgardne
	Iterative Pruning PCA Improves Resolution of Highly Structured Populations [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 382. by Apichart Intarapanich, Philip Shaw, Anunchai Assawamakin, et al.Pongsakorn Wangkumhang, Chumpol Ngamphiw, Kridsadakorn Chaichoompu, Jittima Piriyapongsa, Sissades Tongsima
	Prediction of protein binding sites in protein structures using hidden Markov support vector machine [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 381. by Bin Liu, Xiaolong Wang, Lei Lin, Buzhou Tang, Qiwen Dong, Xuan Wang posted by 1 person poirel
	RNA folding on the 3D triangular lattice [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (05 November 2009), 369. by Joel Gillespie, Martin Mayne, Minghui Jiang posted by 1 person reyez
	A biosegmentation benchmark for evaluation of bioimage analysis methods [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 368. by Elisa D. Gelasca, Boguslaw Obara, Dmitry Fedorov, Kristian Kvilekval, B. Manjunath posted by 1 person erexhepa
	GLIDERS - A web-based search engine for genome-wide linkage disequilibrium between HapMap SNPs [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 367. by Robert Lawrence, Aaron D. Williams, Richard Mott, John Broxholme, Lon Cardon, Eleftheria Zeggini posted by 2 people kshameer daforerog
	(PS)2-v2: template-based protein structure prediction server [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (31 October 2009), 366. by Chih C. Chen, Jenn K. Hwang, Jinn M. Yang posted by 2 people Orengo Group Journal Picks sillitoe
	Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (30 October 2009), 365. by Stefano Lise, Cedric Archambeau, Massimiliano Pontil, David Jones posted by 8 people Orengo Group Journal Picks sillitoe apaydin kshameer zwang phoenixzxl higueruelo neils
	multiplierz: an extensible API based desktop environment for proteomics data analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 October 2009), 364. by Jignesh Parikh, Manor Askenazi, Scott Ficarro, et al.Tanya Cashorali, James Webber, Nathaniel Blank, Yi Zhang, Jarrod Marto posted by 3 people davidmam renatomilani neilswainston
	A novel R-package graphic user interface for the analysis of metabonomic profiles. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (29 October 2009), 363. by Jose L. Izquierdo-Garcia, Ignacio Rodriguez, Angelos Kyriazis, et al.Palmira Villa, Pilar Barreiro, Manuel Desco, Jesus Ruiz-Cabello
	BARCRAWL and BARTAB: Software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 October 2009), 362. by Daniel Frank posted by 6 people natstreet druvus MarkFiers Journal picks ppgardne heliopais
	Predicting sulfotyrosine sites using the random forest algorithm with significantly improved prediction accuracy [My Copy] BMC Bioinformatics, Vol. 10 (29 October 2009), 361. by Zheng R. Yang
	Inferring within-patient HIV-1 evolutionary dynamics under anti-HIV therapy using serial virus samples with vSPA. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (29 October 2009), 360. by Naoki Hasegawa, Wataru Sugiura, Junko Shibata, Masakazu Matsuda, Fengrong Ren, Hiroshi Tanaka posted by 2 people Orengo Group Journal Picks sillitoe
	Analysis and comparison of very large metagenomes with fast clustering and functional annotation. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 359. by Weizhong Li posted by 10 people orzenil ajsferreira idoerg Orengo Group Journal Picks sillitoe ramonvidal Journal picks ppgardne kshameer neils
	ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 358. by Enrico Glaab, Jonathan M. Garibaldi, Natalio Krasnogor posted by 7 people shikin Orengo Group Journal Picks sillitoe Bioinformatics dswan heliopais neils
	AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses [My Copy] BMC Bioinformatics, Vol. 10 (28 October 2009), 357. by Surendra Kumar, Asmund Skjaeveland, Russell Orr, et al.Pal Enger, Torgeir Ruden, Bjorn-Helge Mevik, Fabien Burki, Andreas Botnen, Kamran Shalchian-Tabrizi
	phyloXML: XML for evolutionary biology and comparative genomics [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 356. by Mira Han, Christian Zmasek posted by 8 people operon BergmanLab cisevol kshameer Geknitics druvus phoenixzxl cmzmasek
	Stratification of co-evolving genomic groups using ranked phylogenetic profiles [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 355. by Shiri Freilich, Leon Goldovsky, Assaf Gottlieb, Eric Blanc, Sophia Tsoka, Christos Ouzounis posted by 4 people CLH_1865 Mycology stajich druvus
	Integrating functional genomics data using maximum likelihood based simultaneous component analysis. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (16 October 2009), 340. by Robert A. van den Berg, Iven Van Mechelen, Tom F. Wilderjans, Katrijn Van Deun, Henk A. Kiers, Age K. Smilde posted by 4 people Orengo Group Journal Picks sillitoe ptrobajo ashishanand
	Transcription factor site dependencies in human, mouse and rat genomes [My Copy] BMC Bioinformatics, Vol. 10 (16 October 2009), 339. by Andrija Tomovic, Michael Stadler, Edward Oakeley
	Predicting dihedral angle probability distributions for protein coil residues from primary sequence using neural networks [My Copy] BMC Bioinformatics, Vol. 10 (16 October 2009), 338. by Glennie Helles, Rasmus Fonseca
	Classification and biomarker identification using gene network modules and support vector machines. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (15 October 2009), 337. by Malik Yousef, Mohamed Ketany, Larry Manevitz, Louise C. Showe, Michael K. Showe posted by 6 people Orengo Group Journal Picks sillitoe ptrobajo ashishanand manduca frohike
	A Permutation-Based Multiple Testing Method for Time-Course Microarray Experiments [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 336. by Insuk Sohn, Kouros Owzar, Stephen George, Sujong Kim, Sin H. Jung posted by 4 people ashishanand manduca trogdor owhitney
	Clustering of protein domains for functional and evolutionary studies. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 335. by Pavle Goldstein, Jurica Zucko, Dusica Vujaklija, et al.Anita Krisko, Daslav Hranueli, Paul F. Long, Catherine Etchebest, Bojan Basrak, John Cullum posted by 8 people Orengo Group Journal Picks sillitoe kshameer druvus Journal picks ppgardne zwang phoenixzxl
	Magallanes: a web services discovery and automatic workflow composition tool [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (15 October 2009), 334. by Javier Rios, Johan Karlsson, Oswaldo Trelles posted by 11 people Orengo Group Journal Picks sillitoe Journal picks ppgardne perkeo Geknitics ronbun_2009au cory_ko barriot dullhunk druvus
	Phylogenetic analysis of modularity in protein interaction networks. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (14 October 2009), 333. by Sinan Erten, Xin Li, Gurkan Bebek, Jing Li, Mehmet Koyutürk posted by 10 people Orengo Group Journal Picks sillitoe biomcgary Journal picks ppgardne grahamc zwang druvus barriot phoenixzxl
	STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 332. by Daniel Jupiter, Hailin Chen, Vincent VanBuren posted by 7 people Orengo Group Journal Picks sillitoe rcr1991 trogdor rdiaz druvus torfinnnome
	ConservedPrimers 2.0: A high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 331. by Frank You, Naxin Huo, Yong Gu, Gerard Lazo, Jan Dvorak, Olin Anderson posted by 2 people Bioinformatics Core Service druvus
	BASE - 2nd generation software for microarray data management and analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 330. by Johan V. Christersson, Nicklas Nordborg, Martin Svensson, Jari Hakkinen posted by 7 people dswan Orengo Group Journal Picks sillitoe heliopais daforerog druvus torfinnnome
	PLAST: parallel local alignment search tool for database comparison [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 329. by Van H. Nguyen, Dominique Lavenier posted by 7 people reyez BergmanLab polivares Journal picks ppgardne installe druvus
	miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (12 October 2009), 328. by Wei C. Wang, Feng M. Lin, Wen C. Chang, Kuan Y. Lin, Hsien Da Huang, Na S. Lin posted by 7 people mmartin GeeSharpMinor ealloza natstreet microRNA heliopais druvus
	VANLO - Interactive visual exploration of aligned biological networks. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (12 October 2009), 327. by Steffen Brasch, Lars Linsen, Georg Fuellen posted by 2 people grahamc druvus
	Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD) [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 326. by Thomas Wiegers, Allan Davis, K. Cohen, Lynette Hirschman, Carolyn Mattingly posted by 2 people NaCTeM Effie
	Riboswitch detection using profile Hidden Markov Models [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (08 October 2009), 325. by Payal Singh, Pradipta Bandyopadhyay, Sudha Bhattacharya, A. Krishnamachari, Supratim Sengupta posted by 3 people Mycology stajich reyez
	KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (08 October 2009), 324. by Konstantinos Moutselos, Ioannis Kanaris, Aristotelis Chatziioannou, Ilias Maglogiannis, Fragiskos Kolisis posted by 10 people tonamswish Thaverkamp Orengo Group Journal Picks sillitoe trogdor druvus ptrobajo dullhunk reyez renatomilani
	A stochastic context free grammar based framework for analysis of protein sequences. [My Copy] BMC bioinformatics, Vol. 10 (08 October 2009), 323. by Witold Dyrka, Jean-Christophe C. Nebel posted by 2 people Orengo Group Journal Picks sillitoe
	Deterministic Effects Propagation Networks for reconstructing protein signaling networks from multiple interventions [My Copy] BMC Bioinformatics, Vol. 10 (08 October 2009), 322. by Holger Froehlich, Oezguer Sahin, Dorit Arlt, Christian Bender, Tim Beissbarth
	Discovering multiple realistic TFBS motifs based on a generalized model. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (7 October 2009), 321. by Tak-Ming M. Chan, Gang Li, Kwong-Sak S. Leung, Kin-Hong H. Lee posted by 3 people idonaldson maximilianh ashishanand
	BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (7 October 2009), 320. by Guillermo de la Calle, Miguel G. Remesal, Stefano Chiesa, Diana de la Iglesia, Victor Maojo posted by 10 people perkeo Orengo Group Journal Picks sillitoe Bioinformatics Core Service klauso dullhunk daforerog NaCTeM Effie lmichan
	Generation of Gene Ontology benchmark datasets with various types of positive signal. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (07 October 2009), 319. by Petri Törönen, Petri Pehkonen, Liisa Holm posted by 2 people Orengo Group Journal Picks sillitoe
	Kavosh: a new algorithm for finding network motifs [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 318. by Zahra Razaghi Moghadam Kashani, Hayedeh Ahrabian, Elahe Elahi, et al.Abbas N. Dalini, Elnaz S. Ansari, Sahar Asadi, Shahin Mohammadi, Falk Schreiber, Ali M. Nejad posted by 2 people ashishanand poirel
	Enhancing navigation in biomedical databases by community voting and database-driven text classification [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 317. by Timo Duchrow, Timur Shtatland, Daniel Guettler, Misha Pivovarov, Stefan Kramer, Ralph Weissleder posted by 10 people perkeo artaban421 NaCTeM Effie lmichan daforerog BergmanLab cisevol druvus dullhunk
	Unsupervised statistical clustering of environmental shotgun sequences [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 316. by Andrey Kislyuk, Srijak Bhatnagar, Jonathan Dushoff, Joshua Weitz posted by 4 people ajsferreira dakelley druvus BioInfoCites

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