Diego Prada Gracia's Top Recommendations

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	Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation [My Copy] Current Opinion in Structural Biology In Catalysis and regulation / Proteins, Vol. 17, No. 6. (December 2007), pp. 633-640. by Ivet Bahar, Chakra Chennubhotla, Dror Tobi posted by 15 people allmensch jrperillaj barry aqeel ruvido cactus sobolevnrm structural_bioinformatics Bioinformatics baker-group jennifermbui higueruelo LamBras jmccammon McCammon
	Collective dynamics of \|[lsquo]\|small-world\|[rsquo]\| networks [My Copy] Nature, Vol. 393, No. 6684. (04 June 1998), pp. 440-442. by Duncan J. Watts, Steven H. Strogatz posted by 125 people Sergey_gerbek tonyony vgauthier halukbingol rrbarb dannya222 jsaramak christianholz kentz ptony82 TomHubbard fastjoe23 soramame_0518 jaia normaali leonglester makrehchi makukha fierykylin briordan vtraag dexter_shen AJCann eLearning in Leicester jobadge thegoose2 tomasha apeyrache acrmartins sergiun Kovanen orahcio theus Adso mattjb dpf kaarsinogen cswinburne jmenche Network Data Repository chrisdubois C. elegans / WormBase tharris MehdiMoussaid jobriath camster G_RAM kewms KAllendoerfer AdrianMiles mague alexisgallagher zqshen shivaram cmmorel Shirakawa tolosoft nithya nygaard balicea dumpa matteodellamico yoh dullhunk voiklis eldaly ianturton merazzle maqbes muraken zono zeroknowledge choonpeng cerkut xinian mmartin king amac adriandefroment RafG radale jaspervoskuilen timflutre pbrandao sugaya ruvido rsantana cjeans fbaroni michaelmampaey rcrane ransombriggs suizan lpfernandes dbk-lab GraphVis Semantic-Social-Networks microRNA Web2 Soslab CooperationStudies ColDyn contact-id ADMiRes sbianco 8_01 kb kaks stefanoallesina beete ladamic iris_2001 livingthingdan jsanpedro jotwin ulmer takeha-e dylanwalker mpotamias jpbarrette Borelli jago ddahlem ilkert tomhebbron
	High-resolution structure prediction and the crystallographic phase problem [My Copy] Nature, Vol. 450, No. 7167. (14 October 2007), pp. 259-264. by Bin Qian, Srivatsan Raman, Rhiju Das, et al.Philip Bradley, Airlie J. McCoy, Randy J. Read, David Baker posted by 19 people bmduggan newton1234 apaydin aheilbut jwm eckart_bindewald ffranca dgront massivemayhem cjeans zwang cactus sobolevnrm baker-group boris_aguilar Ema chenway ardalby OPIG
	Intrinsic motions along an enzymatic reaction trajectory. [My Copy] Nature, Vol. 450, No. 7171. (6 December 2007), pp. 838-844. by Katherine A. Henzler-Wildman, Vu Thai, Ming Lei, et al.Maria Ott, Magnus Wolf-Watz, Tim Fenn, Ed Pozharski, Mark A. Wilson, Gregory A. Petsko, Martin Karplus, Christian G. Hübner, Dorothee Kern posted by 13 people ahmetbakan xdeupi ubcg08l ruvido barry aqeel ebeutler cactus sobolevnrm paulschlesinger jlh64 baker-group yalexeev
	The MARTINI Coarse-Grained Force Field: Extension to Proteins [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 5. (1 May 2008), pp. 819-834. by Luca Monticelli, Senthil K. Kandasamy, Xavier Periole, Ronald G. Larson, D. Peter Tieleman, Siewert-Jan Marrink posted by 17 people arnaucordomi dimka oteri sunrise flbarroso Structural Biology Group TorVergata A_Coletta_Thesis krapnik Molecular dynamics in MSU Marine middledomain sobolevnrm baker-group Ema aqeel DanielParton softsimu
	De Novo Computational Design of Retro-Aldol Enzymes [My Copy] Science, Vol. 319, No. 5868. (7 March 2008), pp. 1387-1391. by Lin Jiang, Eric A. Althoff, Fernando R. Clemente, et al.Lindsey Doyle, Daniela Rothlisberger, Alexandre Zanghellini, Jasmine L. Gallaher, Jamie L. Betker, Fujie Tanaka, Carlos F. Barbas, Donald Hilvert, Kendall N. Houk, Barry L. Stoddard, David Baker posted by 22 people barmak7282 baiaixi fralium Biocatalysis and Biotransformation qbin1304 alexknight barry aalibes jwm aprasad dgront zwang sobolevnrm structural_bioinformatics baker-group davidlott msuarezdiez scienbox ucbcjbm McCammon joseph_x_zhou cambray
	REACH Coarse-Grained Biomolecular Simulation: Transferability between Different Protein Structural Classes [My Copy] Biophys. J. (9 May 2008), biophysj.108.131714. by Kei Moritsugu, Jeremy C. Smith posted by 10 people barry baker-group sobolevnrm A_Coletta_Thesis paulschlesinger choonpeng aqeel jmccammon McCammon rok
	Scalable molecular dynamics with NAMD [My Copy] Journal of Computational Chemistry, Vol. 26, No. 16. (December 2005), pp. 1781-1802. by James C. Phillips, Rosemary Braun, Wei Wang, et al.James Gumbart, Emad Tajkhorshid, Elizabeth Villa, Christophe Chipot, Robert D. Skeel, Laxmikant Kalé, Klaus Schulten posted by 26 people krapnik pjkiley flbarroso yxue r2s2 grondina rpetrenko oteri oceanwind dfgreen vahmurk gisle dimka jwm ttjoseph sangeetha yoel_rf bilab wilsoros sobolevnrm Radiation_Damage Stressosome Bioinformatics insilicodrug baker-group ibuch
	Quantifying social group evolution [My Copy] Nature, Vol. 446, No. 7136. (05 April 2007), pp. 664-667. by Gergely Palla, Albert-Laszlo Barabasi, Tamas Vicsek posted by 66 people acrmartins aaltenburger makrehchi gagliol jsaramak normaali vtraag pawelsobko haewoon stargazers muraken pick600 Bolozna salmanjamali Kovanen RolandKappe MehdiMoussaid davidecellai A_Olympia FG davidleitner locatellimp yama_tah worksmarts tystl ddahlem nickluscombe scis0000001 AbnerCYH merazzle hala54 lshaw ei sato-ryu guererk azygmunt adriandefroment JeffreyDemaine cckan jaspervoskuilen ibschwartz CareyNadell zwang RBSCLUBFIJI rcrane fionajay ganden koles Philosophy_of_Information Blog_and_Wiki_Research Semantic-Social-Networks EBI-regulation ComplexAdaptiveSystems CooperativeWriting CISTI-Research AGH-IISG ecoo-ce compbio CSBBGraphTheory ruffini maralena tomhebbron styliani jasonn lfriedl tnhh
	Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 47. (20 November 2007), pp. 18496-18501. by Karunesh Arora, Charles L. Brooks posted by 10 people xdeupi jrperillaj barry allmensch cactus sobolevnrm jlh64 structural_bioinformatics baker-group karunesh
	Network Motifs: Simple Building Blocks of Complex Networks [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 824-827. by R. Milo, S. Shen-Orr, S. Itzkovitz, N. Kashtan, D. Chklovskii, U. Alon posted by 81 people complex networks Sergey_gerbek nurban balabu ocs mjoach makrehchi schwartzjmc poirel tomhebbron arsyed vtraag sergiun fierykylin Akimasa operon GEB dlobo daforerog chasmand wei_tang darian orahcio babakap brewbooks phoenixzxl Md_2007 mtagaya heliopais kaarsinogen galyardt cswinburne mullonc camster korakot aalibes ChaTo imouthesmp Borelli lfriedl alexg balicea tny ssb wnpx ddahlem cmm donade neveaire griota gurkanbebek jtaylor josepe iris_2001 michaelmampaey rebeccamancy karfunkel lenov Philosophy_of_Information dbk-lab Blog_and_Wiki_Research kdl FAB-lab ColDyn ADMiRes Evangelia roys tfogal zibuyu maralena stefanoallesina pbull cmor renatomilani shikin GeneGo carlk applesnow subhacom i-stevenson ethkim
	A minimalist network model for coarse-grained normal mode analysis and its application to biomolecular x-ray crystallography. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (1 October 2008) by Mingyang Lu, Jianpeng Ma posted by 12 people baker-group sobolevnrm aqeel apaydin ruvido agrossfield Nielsen group skoddet structural_bioinformatics McCammon Bioinformatics barry
	Reassessing a sparse energetic network within a single protein domain [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 12. (25 March 2008), pp. 4679-4684. by Celestine N. Chi, Lisa ElfstrÃ¶m, Yao Shi, Tord SnÃ¤ll, Ãke EngstrÃ¶m, Per Jemth posted by 8 people choonpeng barry apaydin cjeans cactus sunhwan sobolevnrm baker-group
	A smooth particle mesh Ewald method [My Copy] The Journal of Chemical Physics, Vol. 103, No. 19. (1995), pp. 8577-8593. by Ulrich Essmann, Lalith Perera, Max L. Berkowitz, Tom Darden, Hsing Lee, Lee G. Pedersen posted by 18 people jmparks rpetrenko Structural Biology Group TorVergata A_Coletta_Thesis r2s2 charris5 pavanghatty baker-group sobolevnrm choonpeng lillekatt and_ped10 easybakemuffin RamuAnandakrishnan ashaytan mikaellund 6rheology jteyra
	The Structure and Function of Complex Networks [My Copy] SIAM Review, Vol. 45, No. 2. (2003), pp. 167-256. by M. E. J. Newman posted by 42 people complex networks Sergey_gerbek Soslab halukbingol jsaramak tomhebbron jotwin LaurentHD vmarceau qqwert mrkn ocs brihea chibatching davidecellai diamantis panisson spool deanmalmgren pcarbo matteodellamico eyliu afragop merazzle muraken lshaw jaspervoskuilen timflutre gcalda gi0rgi0ne rcrane Complex_Real_Networks EntrepreneurialRisks shikin nolodie stefanoallesina eustatic skumagai ilkert rrbarb ebalp Borelli
	Protein-protein binding is often associated with changes in protonation state [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Aaron C. Mason, Jan H. Jensen posted by 10 people flbarroso onufriev csrocha bicko sobolevnrm baker-group RamuAnandakrishnan barry structural_bioinformatics McCammon
	Recent advances in implicit solvent-based methods for biomolecular simulations. [My Copy] Current opinion in structural biology, Vol. 18, No. 2. (04 April 2008), pp. 140-148. by Jianhan Chen, Charles L. Brooks, Jana Khandogin posted by 10 people RamuAnandakrishnan mikaellund Structural Biology Group TorVergata oteri nickolay flbarroso choonpeng sobolevnrm baker-group onufriev
	Predicting Allosteric Communication in Myosin via a Pathway ofConserved Residues [My Copy] Journal of Molecular Biology, Vol. In Press, Accepted Manuscript by Susan Tang, Jung-Chi Liao, Alexander R. Dunn, Russ B. Altman, James A. Spudich, Jeanette P. Schmidt posted by 8 people barry choonpeng cactus sobolevnrm jlh64 structural_bioinformatics baker-group melting
	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dumpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted by 41 people tomhebbron ajbattle mgomes Scis0000002 lawraga bicko saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology phoenixzxl larsjuhljensen ellakat frohike carlk ethkim
	Can Conformational Change Be Described by Only a Few Normal Modes? [My Copy] Biophys. J., Vol. 90, No. 5. (1 March 2006), pp. 1583-1593. by Paula Petrone, Vijay S. Pande posted by 20 people ahmetbakan csrocha BragilMassoud barry dimka aqeel shuns yongzhao xdeupi choonpeng joergkurtwegner daevans structural_bioinformatics Bioinformatics TSRI_MGL Molecular-Modelling Drug-Design Cheminformatics LabCompMed LamBras
	Comparison of multiple Amber force fields and development of improved protein backbone parameters. [My Copy] Proteins, Vol. 65, No. 3. (15 November 2006), pp. 712-725. by Viktor Hornak, Robert Abel, Asim Okur, Bentley Strockbine, Adrian Roitberg, Carlos Simmerling posted by 11 people arnaucordomi Vadikus bmduggan baaden lna allmensch choonpeng kazemi barry GermanErlenkamp RamuAnandakrishnan
	Calculation of protein-ligand binding free energy by using a polarizable potential [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 17. (29 April 2008), pp. 6290-6295. by Dian Jiao, Pavel A. Golubkov, Thomas A. Darden, Pengyu Ren posted by 9 people flbarroso onufriev jmccammon biehl sobolevnrm baker-group barry structural_bioinformatics McCammon
	Accelerating molecular dynamic simulation on graphics processing units [My Copy] Journal of Computational Chemistry, Vol. 30, No. 6. (2009), pp. 864-872. by Mark S. Friedrichs, Peter Eastman, Vishal Vaidyanathan, et al.Mike Houston, Scott Legrand, Adam L. Beberg, Daniel L. Ensign, Christopher M. Bruns, Vijay S. Pande posted by 14 people anuragsethi kevinchannon flbarroso r2s2 iantunbridge ihaque baker-group sobolevnrm ruvido massivemayhem structural_bioinformatics McCammon barry RamuAnandakrishnan
	Linked: How Everything Is Connected to Everything Else and What It Means [My Copy] (29 April 2003) by Albert-Laszlo Barabasi posted by 134 people kinop borkurdotnet scottmoody davidleitner simdoc makrehchi fierykylin tomhebbron boosda Information Integration Architecture mxro thegoose rickl MariaChiaraP pdlug nazimkeven eddymier mboehmer ajaymalik pacianca3 donade einatb gastarblogger fbr maike emre panisson Adso gkoenig mattjb mooniii pick600 germoglio hrwiltse laurobeltrao nigini camster draggin korakot Mandre A_Olympia zephoria RyanSchultz fmatthes scholz barry cyprien riadlem lehel zinp nkorf tautai wcrosbie cchesher cmmorel jekky Typewriter mbliemel Jenneke cgjj slariccia irinas petzlux marije seawidget hannont matteodellamico leonardo bibliothecaire bigbossman krisl spirit_of_numenor cristinaalp brusilovsky jwdietrich britton cerkut awooga mzygmunt azygmunt RafG jaspervoskuilen kevinemamy timflutre alexevasion flavian_vasile mattlandau PaulBHartzog roland_ewald jenna anansi sidds1601 rkalvi JimFolk CMU-HCII Philosophy_of_Information dbk-lab Blog_and_Wiki_Research automatic_summarization structural_bioinformatics CSCW MathBio ASR digital_youth Sociology Librarians Semantic-Social-Networks Wikipedia CoP_CMS Bioinformatics folksonomy ETEC533 CMS Cybernetics social_navigation ComplexAdaptiveSystems Biomedical_Cybernetics AGH-IISG Adaptive-Web dIEMoSIRIS MoSi-Rostock AQUA-FONTIS-Study MASSS CSU_School_of_Education Web2-0_Education asrilova Social Web anton-tayanovskyy ICT4D aelzaim copyculture kamccollum kikimu thecolourblue
	How to write consistently boring scientific literature [My Copy] Oikos, Vol. 116, No. 5. (May 2007), pp. 723-727. by Kaj Sand-Jensen posted by 212 people gvdh kimbatchelor welliegirl DavidG67 nellapower jimo75 sachingarg claudiushauptmann jmzhuo Horduna toszko chriswillmott mthomure Thaverkamp ibre sfalsharif lafuente Sergey_gerbek Torsten_Holmer aaltenburger tminze mmborges Dannycoutinho soniapereira Anita13 simonhearne rudalert ulrichs UWA Science Communication duel_jetty nmsx TVB timsenior livingthingdan alhoori poojamaj letillett christianholz amynmoore pvdg leonardo Med Anthro @ UF cgravlee bhengeveld ansobol jrw proportional wendygarnica jsatkosk eumelus pdpcosta AnthonySoprano wasteland93 buchgeher lmichan NIlz sxs732 artaban421 kieranhood rabit pauljhurtado SantoshKalwar aldra zchen75 nbawia Zephyrus jgebbie lanmuzi amadeusstevenson akuhn metatheory Fneesen hkimura beete CamilleH luciensamary jcreed R_C_Cordeiro thenose cyounkin robertlischke bspackman lyss Scholarly Communication sebpaquet c_hughes klauso kaiserm tomhebbron tarokiritani nGrenier girabbit jaia CulCog alexander_bauer Gaetan cjhall mdwelsh231 sniklas polivares MurphysLab ckai1 tux2000 petko_bogdanov carelcad Tomste yangjustinc thegoose michaelbanks mrt2k9 marekrud ibuch pawelsobko klexa tunheim Elley AJCann amoreno operon McCammon barry jod999 guhjy pick600 leliavski ombamawu mjoach Publicase Thermaneutist gwallau tnhh signori birte bertelsen mmuecke Mohan-S Dori2008 konstantinos charoy flips arsyed sjefarrar rohanlowe syah jjray zzh1986 brownstudy abellogin fungal sgeuter jkglenn psique anphony ajaymalik jjrohal markusd conradlee mschmer gkoenig natstreet BergmanLab cisevol silberbauer Khavkin's lab ArtemPankin druvus allysonlister dullhunk VGreiff dbk ultrascichick ahaeusler rickl brian toomash orca Borelli cmunson lfriedl sterovetta maike echinotrix awooga yEvb0 scpeters jford pratap williamdwalker sjones pseudopharm cjeans sensesublime TaqSys soumitri GeeSharpMinor tumo rebeccamancy ascharle suizan kaniko erklaerbaer boosda kdl Neuroscience STS ColDyn feminist_technoscience OrganizationResearch Enactment Academic Writing, Literacies and Discourse hejibo randomname
	Hierarchical structure and the prediction of missing links in networks [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 98-101. by Aaron Clauset, Cristopher Moore, M. E. J. Newman posted by 47 people ipark-kaist carlk gtgt15 saket wei_tang Kovanen diamantis cfelipesp orahcio rcrane kubyaddi pbull Ema jago cmor balicea kengg jjray soramame_0518 deanmalmgren briordan hryk tny AbnerCYH cactus tmmurali akshat bryanhughes gagliol margaritis guhjy craigwilson06 cmmorel eyliu markusd elsantosneto pinney i-stevenson fbaroni nedwards apwesolowski Borelli ptrobajo dpf rds lfriedl sen_cheng
	Principles of docking: An overview of search algorithms and a guide to scoring functions. [My Copy] Proteins, Vol. 47, No. 4. (1 June 2002), pp. 409-443. by Inbal Halperin, Buyong Ma, Haim Wolfson, Ruth Nussinov posted by 30 people rabio ucbcjbm flbarroso csrocha Structural Biology Group TorVergata oteri timg dgruiz cantupaz apaydin bicko chad_davis yongzhao ttjoseph nickolay ima sangeetha dgront blackbart gane5h mmuecke kazemi bpagano massivemayhem cjeans Bioinformatics TSRI_MGL insilicodrug Evangelia nigham
	Wordom: a program for efficient analysis of molecular dynamics simulations [My Copy] Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2625-2627. by Michele Seeber, Marco Cecchini, Francesco Rao, Giovanni Settanni, Amedeo Caflisch posted by 9 people guhjy barry tmmurali choonpeng hmk sobolevnrm structural_bioinformatics baker-group LamBras
	Long-timescale molecular dynamics simulations of protein structure and function. [My Copy] Current opinion in structural biology, Vol. 19, No. 2. (08 April 2009), pp. 120-127. by John L. Klepeis, Kresten Lindorff-Larsen, Ron O. Dror, David E. Shaw posted by 13 people xdeupi agrossfield allmensch bmduggan r2s2 apaydin kiekyon Borelli idoerg baker-group sobolevnrm edws paulschlesinger
	Structural systems biology: modelling protein interactions. [My Copy] Nature reviews. Molecular cell biology, Vol. 7, No. 3. (March 2006), pp. 188-197. by Patrick Aloy, Robert B. Russell posted by 28 people flbarroso timg chica Scis0000002 ubcg08l ana aalibes bicko xico dgront drastic choonpeng henschel ruvido massivemayhem cat_worth fishtank iris_2001 gvuister lpfernandes structural_bioinformatics Bioinformatics WetBiology Evangelia andreas_foersch higueruelo chad_davis jteyra
	Progress in Modeling of Protein Structures and Interactions [My Copy] Science, Vol. 310, No. 5748. (28 October 2005), pp. 638-642. by Ora Schueler-Furman, Chu Wang, Phil Bradley, Kira Misura, David Baker posted by 22 people krapnik rabio ucbcjbm paddydu flbarroso thaliana jwm vavi bicko KyuhoLee marcius eweaver tny nickolay dgront rsantana mirzazadeh insectopalo BioinfoCIPF SGU-CIPF barry structural_bioinformatics
	Intrinsic disorder as a mechanism to optimize allosteric coupling in proteins [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 20. (15 May 2007), pp. 8311-8315. by Vincent J. Hilser, E. Brad Thompson posted by 10 people guhjy apaydin barry choonpeng cursonivel1 cactus structural_bioinformatics Bioinformatics cursonivel1 allmensch
	Secondary Structure Bias in Generalized Born Solvent Models: Comparison of Conformational Ensembles and Free Energy of Solvent Polarization from Explicit and Implicit Solvation [My Copy] J. Phys. Chem. B, Vol. 111, No. 7. (22 February 2007), pp. 1846-1857. by D. R. Roe, A. Okur, L. Wickstrom, V. Hornak, C. Simmerling posted by 7 people RamuAnandakrishnan flbarroso baaden choonpeng sobolevnrm baker-group onufriev
	Pump-probe molecular dynamics as a tool for studying protein motion and long range coupling [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 2. (2006), pp. 347-361. by Kim Sharp, John J. Skinner posted by 7 people barry lna choonpeng sobolevnrm structural_bioinformatics Bioinformatics baker-group
	Investigating protein dynamics in collective coordinate space [My Copy] Current Opinion in Structural Biology, Vol. 9, No. 2. (April 1999), pp. 164-169. by A. Kitao, N. Go posted by 8 people bmduggan Scis0000002 ttjoseph ffranca barry choonpeng sobolevnrm baker-group
	Protein Dynamism and Evolvability [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 203-207. by Nobuhiko Tokuriki, Dan S. Tawfik posted by 23 people tomhebbron anuragsethi ahmetbakan kevinchannon klexa lauresultan dbikard ibuch ramiro2k structural_bioinformatics McCammon barry pablocarb ramanuja baker-group sobolevnrm biomcgary hsekiguc VGreiff phoenixzxl zwang jdoconnell paulschlesinger
	Prediction of membrane protein structures with complex topologies using limited constraints [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 5. (3 February 2009), pp. 1409-1414. by P. Barth, B. Wallner, D. Baker posted by 13 people rph dgront OPIG sebk structural_bioinformatics barry krapnik viktor21614 paulschlesinger zwang apaydin agrossfield amishp
	Power laws, Pareto distributions and Zipf's law [My Copy] (29 May 2006) by M. E. J. Newman posted by 68 people danilov Sergey_gerbek ingo Gorzomagnificent Soslab halukbingol makrehchi jotwin pdlug klouie tnhh diamantis flips jfelipe eisdur BelliOS nolodie pietrosperoni egh korakot sccook sriks6711 mafwood A_Olympia JeffreyPalmer derek_farn ansobol devzero nigini yaroslavvb lubrifix mague mapio ecolab garyfeng ChaTo yishuai Borelli bayesian lyongu scottmoody balicea mukundn proportional entropy scis0000001 bigbossman cristinaalp merazzle sugarexpletive mp4man MoritzStefaner mylit gi0rgi0ne ejazasi salvoscellato Philosophy_of_Information Blog_and_Wiki_Research ReadingLab 18th-century_history_culture_and_society semantic-multicast-routing Web2 EntrepreneurialRisks ruffini skheller ulmer quianominorleo dylanwalker
	Modeling protein conformational ensembles: From missing loops to equilibrium fluctuations [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 1. (2006), pp. 164-179. by Amarda Shehu, Cecilia Clementi, Lydia E. Kavraki posted by 9 people apaydin nigham aqeel yongzhao elham hmk sobolevnrm TSRI_MGL baker-group
	Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins [My Copy] PLoS Comput Biol, Vol. 5, No. 2. (20 February 2009), e1000293. by Michael D. Daily, Jeffrey J. Gray posted by 13 people anuragsethi skywalkerus02 baker-group sobolevnrm pablocarb AngelB eallain allmensch gane5h apaydin structural_bioinformatics McCammon barry
	Conformational change of proteins arising from normal mode calculations [My Copy] Protein Eng., Vol. 14, No. 1. (1 January 2001), pp. 1-6. by F. Tama, Y. H. Sanejouand posted by 9 people sanejouand baker-group sobolevnrm baaden aqeel ruvido martainn saravan nigham
	Molecular dynamics simulations of nucleic acid-protein complexes. [My Copy] Current opinion in structural biology, Vol. 18, No. 2. (April 2008), pp. 194-199. by A. D. Mackerell, L. Nilsson posted by 6 people flbarroso ruvido zwang sobolevnrm baker-group phoenixzxl
	Flexibility and conformational entropy in protein-protein binding. [My Copy] Structure, Vol. 14, No. 4. (April 2006), pp. 683-693. by R. Grünberg, M. Nilges, J. Leckner posted by 9 people hmk raik barry pansapiens lna aqeel allmensch structural_bioinformatics Bioinformatics
	Improved Efficiency of Replica Exchange Simulations through Use of a Hybrid Explicit/Implicit Solvation Model [My Copy] J. Chem. Theory Comput., Vol. 2, No. 2. (14 March 2006), pp. 420-433. by A. Okur, L. Wickstrom, M. Layten, et al.R. Geney, K. Song, V. Hornak, C. Simmerling posted by 4 people allmensch ruvido sobolevnrm baker-group
	Improved side-chain modeling for protein-protein docking. [My Copy] Protein Sci, Vol. 14, No. 5. (May 2005), pp. 1328-1339. by C. Wang, O. Schueler-Furman, D. Baker posted by 15 people dgront csrocha barry aqeel jwm bicko yongzhao blackbart bluvsh1 hmk selrac structural_bioinformatics Bioinformatics TSRI_MGL Evangelia
	Recent advances in the study of nucleic acid flexibility by molecular dynamics [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Modesto Orozco, Agnes Noy, Alberto Pérez posted by 6 people allmensch Elena_Zubova sobolevnrm baker-group onufriev mazo
	Statistical mechanics of complex networks [My Copy] Reviews of Modern Physics, Vol. 74, No. 1. (Jan 2002), pp. 47-97. by Réka Albert, Albert L. Barabási posted by 48 people tessonec pak tjpp fastjoe23 mfuhr juhop conservatism mrkn hendysh pdlug davidecellai makrehchi MarkEveritt tnhh satch5841 ddahlem iris_2001 AnneB phreeza diamantis jmenche bruno alexphys eegilbert mullonc orahcio cmmorel itmeson mbliemel eyliu fukken cristinaalp merazzle kevina muraken babyone somasanyal jaspervoskuilen timflutre ransombriggs nolodie kikiblue7 e1000ian stefanoallesina jotwin ebalp spool jmchauvet
	Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000204. by Duncan Hull, Steve R. Pettifer, Douglas B. Kell posted by 222 people gbouma welliegirl Dentistry suribe mordiano operon Horduna cyrille IgorP sachingarg claudiushauptmann ianturton tech4trainers radagabriel mfenner Zotero en español jalonsoarevalo StemCellWorkstation martica840527 agbiotec LinaMelo claudine acabezas aaltenburger sarelfa Anita13 Dannycoutinho tmar lucybuykx ltitodem dcombe christianholz schoeband dgovoni maren antonkratz mzkbnt girabbit mawds tlb56 sstose klexa n00c slr52 Journal picks jandot applebyb timhubbard yangjustinc CameronNeylon heliopais sarabatts aldra Prlwrlczkwsky CPAP amyfyn vellino ulrichs malkav30 cristiangutierrez rockrescue victorantoniomtz Tita NancyAbigail Nembrod jclau clarabermudez tanyacovi6 Health_Informatics jmohan polivares artaban421 nperoni eudominguezmartin nhoussos MARCOUNAM carelcad euanlawson furlong stevepettifer flipip23 virolog ZoeThomas pawelsobko tnhh kbkbk8 rickl nellapower mcentyre wujastyk beanformer msanchof2009 Herramientas20 dmaweb bhengeveld jpgrolle wsumthai daforerog Semantic-Social-Networks INK-SSCI-SCI@CiteuLike.org INK-SSCI-SCI quianominorleo tux2000 cogs eLearning in Leicester AJCann robsyme anthrogeek lmichan sainsworth hkimura western4uk cybob10 kevinemamy akriesch williamgunn mgh-lcs carlblesius NaCTeM Effie alhoori mikel_egana tilanka coldmeadow yas Tomste mseyfang fitzgeraldp2 fungal eduardod5 DavidG67 chenlc03 stempvoort lesikv jmueller17 sirexkat Koh akraemer thegoose kharke niallhaslam rdmagnuson JuanGiarrizzo pkonings jennialp lgibson rmasur GJNauta puchu rrbarb amarois mneeley MEHTRadiology dr_lee_xray IRTADOC zilvlan curthh mount_misery narroyo rdiaz treangen hpaces bumatic BerndBerndsen Département Hypermédia - Master NET esterhasz phreeza dbk rempeljl teachingaging cs02 joseph_x_zhou continea Rosetta fletchad Betelgeuse60 tomroper 1971biblio timrwatkins rschulz JLab BergmanLab cisevol ryan smithrise silberbauer natstreet pick600 xjlibod ukppdadsr robertlischke bookwormzz NIlz junwang4 taguchi tag McCammon barry kristgy caseybrown Gaetan bcondon lynnefox marekrud nuin sdgsilvana ckai1 guhjy neils norris Poverty Alleviation from Access to Knowledge jago druvus emayorga GeeSharpMinor fgibson structural_bioinformatics chad_davis Roswell Cancer Crosstalk Zephyrus leonardo dullhunk
	The relaxed complex method: Accommodating receptor flexibility for drug design with an improved scoring scheme. [My Copy] Biopolymers, Vol. 68, No. 1. (January 2003), pp. 47-62. by J. H. Lin, A. L. Perryman, J. R. Schames, J. A. McCammon posted by 9 people karinaecomp barry blackbart kazemi sobolevnrm structural_bioinformatics Bioinformatics baker-group LamBras
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	Molecular dynamics with coupling to an external bath [My Copy] The Journal of Chemical Physics, Vol. 81, No. 8. (1984), pp. 3684-3690. by H. J. C. Berendsen, J. P. M. Postma, W. F. van Gunsteren, A. Dinola, J. R. Haak posted by 14 people georgwachter Structural Biology Group TorVergata A_Coletta_Thesis rdf r2s2 dsmueller Lombardo_7 gsub lillekatt allmensch jwagoner tji choonpeng jteyra
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	Quantifying allosteric effects in proteins [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 59, No. 4. (01 June 2005), pp. 697-707. by Dengming Ming, Michael E. Wall posted by 7 people edws apaydin lna aqeel choonpeng ruvido cactus
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	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by Michael Ashburner, Catherine A. Ball, Judith A. Blake, et al.David Botstein, Heather Butler, J. Michael Cherry, Allan P. Davis, Kara Dolinski, Selina S. Dwight, Janan T. Eppig, Midori A. Harris, David P. Hill, Laurie Issel-Tarver, Andrew Kasarskis, Suzanna Lewis, John C. Matese, Joel E. Richardson, Martin Ringwald, Gerald M. Rubin, Gavin Sherlock posted by 81 people artaban421 mtaschuk niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick BTS-PT-AS-CS vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele kdl Bioinformatics EisenLab T_lab biomedical-nlp CitoJam pablomendes carlk marck dgront roys rvosa FAB-lab fongenae
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	Binding induced conformational changes of proteins correlate with their intrinsic fluctuations: A case study of antibodies [My Copy] BMC Structural Biology, Vol. 7 (17 May 2007), 31. by Ozlem Keskin posted by 6 people skywalkerus02 baker-group sobolevnrm aqeel choonpeng medic0747
	Correlated substitution analysis and the prediction of amino acid structural contacts [My Copy] Brief Bioinform (13 November 2007), bbm052. by David S. Horner, Walter Pirovano, Graziano Pesole posted by 10 people mgomes qluo RebeccaHamer barry zwang sobolevnrm structural_bioinformatics Bioinformatics baker-group Lombardo_7
	Rotamer Libraries in the 21st Century [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 4. (1 August 2002), pp. 431-440. by R. Dunbrack posted by 12 people aqeel msuarezdiez carlosjavierna apaydin barry joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics LamBras
	A Systematic Methodology for Defining Coarse-Grained Sites in Large Biomolecules [My Copy] Biophysical Journal, Vol. 95, No. 11. (01 December 2008), pp. 5073-5083. by Z. Zhang, L. Lu, W. Noid, V. Krishna, J. Pfaendtner, G. Voth posted by 8 people okapi structural_bioinformatics McCammon barry sobolevnrm choonpeng agrossfield paulschlesinger
	Similarity Measures for Protein Ensembles [My Copy] PLoS ONE, Vol. 4, No. 1. (15 January 2009), e4203. by Kresten Lindorff-Larsen, Jesper Ferkinghoff-Borg posted by 12 people anuragsethi klexa apaydin baker-group sobolevnrm gane5h structural_bioinformatics barry McCammon jmccammon reyez biehl
	Resolution limit in community detection [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 1. (2 January 2007), pp. 36-41. by Santo Fortunato, Marc BarthÃ©lemy posted by 20 people AaronMcDaid wjant pdlug compbio almadana conradlee zufar vtraag cgaugain pdelosri lfriedl yas muraken iris_2001 kdl T_lab EPFL_SB_ITP_LBS kubyaddi marcio orahcio
	<FONT SIZE='-2'>CHARMM</FONT>: A program for macromolecular energy, minimization, and dynamics calculations [My Copy] Journal of Computational Chemistry, Vol. 4, No. 2. (1983), pp. 187-217. by Bernard R. Brooks, Robert E. Bruccoleri, Barry D. Olafson, David J. States, S. Swaminathan, Martin Karplus posted by 17 people ubcg08l flbarroso nickolay newton1234 kgutwin r2s2 rpetrenko oceanwind RamuAnandakrishnan tovrstra dfgreen Lombardo_7 dgront mmuecke rabio saravan gisle
	How Efficient Is Replica Exchange Molecular Dynamics? An Analytic Approach [My Copy] J. Chem. Theory Comput., Vol. 4, No. 4. (8 April 2008), pp. 626-636. by Hugh Nymeyer posted by 7 people agrossfield sobolevnrm baker-group loison barry structural_bioinformatics McCammon
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	Determination of electrostatic interaction energies and protonation state populations in enzyme active sites [My Copy] Journal of Molecular Biology, Vol. In Press, Accepted Manuscript by Chresten R. Sondergaard, Lawrence P. Mcintosh, Gianluca Pollastri, Jens E. Nielsen posted by 6 people onufriev barry sobolevnrm structural_bioinformatics baker-group skoddet
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	Coarse-grained models for proteins [My Copy] Current Opinion in Structural Biology, Vol. 15, No. 2. (April 2005), pp. 144-150. by V. Tozzini posted by 10 people flbarroso krapnik RamuAnandakrishnan baaden aqeel ltrabuco simone cottrell choonpeng iantunbridge
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	The Membrane Potential and its Representation by a Constant Electric Field in Computer Simulations. [My Copy] Biophysical journal (18 July 2008) by Benoit Roux posted by 7 people baker-group sobolevnrm agrossfield paulschlesinger McCammon abebe dimka
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	Structural diversity of domain superfamilies in the CATH database. [My Copy] Journal of molecular biology, Vol. 360, No. 3. (14 July 2006), pp. 725-741. by Gabrielle A. Reeves, Timothy J. Dallman, Oliver C. Redfern, Adrian Akpor, Christine A. Orengo posted by 10 people martainn yuslinaz barry marcius sobolevnrm structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF baker-group
	Dielectric relaxation in proteins: the computational perspective. [My Copy] Photosynthesis research (29 April 2008) by Thomas Simonson posted by 5 people flbarroso chiufanlee dimka sobolevnrm baker-group
	Rescoring docking hit lists for model cavity sites: predictions and experimental testing. [My Copy] Journal of molecular biology, Vol. 377, No. 3. (28 March 2008), pp. 914-934. by Alan P. Graves, Devleena M. Shivakumar, Sarah E. Boyce, Matthew P. Jacobson, David A. Case, Brian K. Shoichet posted by 3 people allmensch sobolevnrm baker-group
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	Charge asymmetries in hydration of polar solutes. [My Copy] The journal of physical chemistry. B, Vol. 112, No. 8. (28 February 2008), pp. 2405-2414. by D. L. Mobley, A. E. Barber, C. J. Fennell, K. A. Dill posted by 6 people flbarroso sobolevnrm baker-group onufriev dmobley middledomain
	A mathematical tool for exploring the dynamics of biological networks [My Copy] Proceedings of the National Academy of Sciences (21 November 2007), 0709955104. by Paolo E. Barbano, Marina Spivak, Marc Flajolet, Angus C. Nairn, Paul Greengard, Leslie Greengard posted by 13 people Scis0000002 agomez tmmurali cjeans zwang cactus sobolevnrm forgoston lenov baker-group sdbneuro mdramirez phoenixzxl
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	Analysis of X-ray and neutron scattering from biomacromolecular solutions [My Copy] Current Opinion in Structural Biology In Carbohydrates and glycoconjugates / Biophysical methods, Vol. 17, No. 5. (October 2007), pp. 562-571. by Maxim V. Petoukhov, Dmitri I. Svergun posted by 5 people dgront choonpeng sobolevnrm CameronNeylon baker-group
	The generalized Born/volume integral implicit solvent model: Estimation of the free energy of hydration using London dispersion instead of atomic surface area [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (2008), NA. by Paul Labute posted by 8 people onufriev sobolevnrm baker-group RamuAnandakrishnan middledomain sunhwan dmobley GermanErlenkamp
	Combining Efficient Conformational Sampling with a Deformable Elastic Network Model Facilitates Structure Refinement at Low Resolution [My Copy] Structure, Vol. 15, No. 12. (13 December 2007), pp. 1630-1641. by Gunnar F. Schroder, Axel T. Brunger, Michael Levitt posted by 6 people aqeel cjeans sobolevnrm jlh64 baker-group TOchi
	Protein crystallography for non-crystallographers, or how to get the best (but not more) from published macromolecular structures [My Copy] FEBS Journal, Vol. 275, No. 1. (January 2008), pp. 1-21. by Wlodawer, Alexander, Minor, et al. Wladek, Dauter, Zbigniew, Jaskolski, Mariusz posted by 10 people klexa nanonan structural_bioinformatics McCammon barry baker-group sobolevnrm ae1054 aisyahrehan rph
	A Quick Guide to Organizing Computational Biology Projects [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000424. by William S. Noble posted by 64 people pekrau Sergey_gerbek mordiano remoteFuture Yanno Pedro Martinez EvoDevo lab Barcelona aaltenburger marekrud guhjy dolchan frohike operon Orengo Group Journal Picks CorinYeats artaban421 antonkratz tomhebbron maren bayesian daveGerrard JoeBanks jcaddy somak bertelsen ptrobajo nperoni daforerog mmwoodman charris5 GustavoLacerda pmendes fgibson rdiaz Zephyrus heliopais franklu310 lmichan silberbauer leemond31 jlangdon robfsouza Bioinformatics - CRUK Stew pmung reyez kshameer djkt pawelsobko jjray dswan apaydin renatomilani VGreiff cabbagesofdoom ccsbs wei_tang fenghezi BergmanLab cisevol structural_bioinformatics McCammon barry sdaehne druvus
	Evidence for dynamically organized modularity in the yeast protein-protein interaction network. [My Copy] Nature, Vol. 430, No. 6995. (1 July 2004), pp. 88-93. by Jing-Dong D. Han, Nicolas Bertin, Tong Hao, et al.Debra S. Goldberg, Gabriel F. Berriz, Lan V. Zhang, Denis Dupuy, Albertha J. Walhout, Michael E. Cusick, Frederick P. Roth, Marc Vidal posted by 32 people colmryan mgomes saket lawraga diamantis davidecellai dragonrez lfriedl balajis yoh j3xucite kintoki koller mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes winterschlaefer kdl Evangelia cdeane shung phoenixzxl stefanoallesina ellakat frohike shikin GeneGo ksiek carlk
	Analysis of the residue-residue coevolution network and the functionally important residues in proteins [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Byung-Chul Lee, Keunwan Park, Dongsup Kim posted by 10 people barry neils sobolevnrm structural_bioinformatics baker-group mingzhi penpen926 scienbox wilbur friendpine