Haggan's Top Recommendations

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	MUSCLE: a multiple sequence alignment method with reduced time and space complexity [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (19 August 2004), 113. by Robert Edgar posted by 37 people parnell tomatoe45 rneches LabDros gwallau OscarLopez ivanffcc Helenita Joaquin kmma13 khlevy Pal tomjad mgomes hryk BioNica natstreet References for 3DSim paper Md_2007 sebk wallacei knaseanka chrn jwm balajis gbart caporaso sriram_s cdallett sanchezbuelna timflutre gisle Radiation_Damage Stressosome biomedical-nlp urgi Ema
	MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison. [My Copy] Protein science : a publication of the Protein Society, Vol. 11, No. 11. (1 November 2002), pp. 2606-2621. by Angel R. Ortiz, Charlie E. Strauss, Osvaldo Olmea posted by 11 people tomjad awarlau ana iakes dimka jwm analogAI structural_bioinformatics Bioinformatics sebk tjimenez
	The Protein Data Bank [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242. by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne posted by 53 people loison ubcg08l trishul krapnik barmak7282 viktor21614 badi ucbcjbm TLVincent maria_hauser Martin8223 tomjad Diego_Prada flbarroso Taguan oceanwind dsmueller fisherp semin MarcoAlvarez kumar_physics References for 3DSim paper LamBras RamuAnandakrishnan nlapalu reyez nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon aengisch debatebob massivemayhem gisle girschick selrac Radiation_Damage Stressosome biomedical-nlp beta tji higueruelo boris_aguilar sebk timg
	A new progressive-iterative algorithm for multiple structure alignment. [My Copy] Bioinformatics (7 June 2005) by Dmitry Lupyan, Alejandra Leo-Macias, Angel R R. Ortiz posted by 10 people tomjad sebk ana dimka marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF tjimenez
	Improved prediction of signal peptides: SignalP 3.0. [My Copy] Journal of molecular biology, Vol. 340, No. 4. (16 July 2004), pp. 783-795. by Jannick Dyrløv D. Bendtsen, Henrik Nielsen, Gunnar von Heijne, Søren Brunak posted by 11 people BioNica azazello tfuji rpetrenko katholt nedwards kreibich niallhaslam richter80 sebk raiyar
	Identification of common molecular subsequences [My Copy] Journal of Molecular Biology, Vol. 147, No. 1. (25 March 1981), pp. 195-197. by T. Smith posted by 7 people stharward farhat alessandroparini sebk BioNica jofiel elfar
	Amino acid substitution matrices from protein blocks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 89, No. 22. (15 November 1992), pp. 10915-10919. by S. Henikoff, J. G. Henikoff posted by 16 people VGreiff rshe rpetrenko BioNica maria_hauser cmura alefox j3xucite sebk cen4ik kaarsinogen dgront gurkanbebek Iden-J_GluR cjeans ashwinma
	A general method applicable to the search for similarities in the amino acid sequence of two proteins. [My Copy] Journal of molecular biology, Vol. 48, No. 3. (March 1970), pp. 443-453. by S. B. Needleman, C. D. Wunsch posted by 17 people windman83 esyoun stsaft timflutre mcbla BioNica db344 DarkMars cawelsh9 sebk jwm dgront rabio incovoma yylin newton1234 Ema
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted by 75 people saunders rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser jbhiatt yylin mgomes BioNica idoerg pjcite swp09 kgutwin mcbla cpwardell References for 3DSim paper johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 EisenLab biomedical-nlp Microbial-Ecology Plantandetc mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM
	Clustal W and Clustal X version 2.0 [My Copy] Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2947-2948. by M. A. Larkin, G. Blackshields, N. P. Brown, et al.R. Chenna, P. A. McGettigan, H. McWilliam, F. Valentin, I. M. Wallace, A. Wilm, R. Lopez, J. D. Thompson, T. J. Gibson, D. G. Higgins posted by 19 people l00cas vprieto Copper_Calcio TLVincent tomjad BioNica udivi Keksle hpm druvus treangen jwm cassj lisa1 ryanraaum bmaust alanrw mschofie marck
	Effective use of sequence correlation and conservation in fold recognition. [My Copy] Journal of molecular biology, Vol. 293, No. 5. (12 November 1999), pp. 1221-1239. by O. Olmea, B. Rost, A. Valencia posted by 3 people qluo gbart cjeans
	Mapping pathways of allosteric communication in GroEL by analysis of correlated mutations [My Copy] Proteins: Structure, Function, and Genetics, Vol. 48, No. 4. (1 September 2002), pp. 611-617. by Itamar Kass, Amnon Horovitz posted by 3 people mgomes qluo gbart
	Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations? [My Copy] Protein engineering, Vol. 7, No. 3. (1 March 1994), pp. 349-358. by I. N. Shindyalov, N. A. Kolchanov, C. Sander posted by 5 people stharward qluo gbart nirfriedman kieran101
	Correlated mutations and residue contacts in proteins [My Copy] Proteins: Structure, Function, and Genetics, Vol. 18, No. 4. (April 1994), pp. 309-317. by Ulrike Göbel, Chris Sander, Reinhard Schneider, Alfonso Valencia posted by 10 people mgomes qluo RebeccaHamer mcbla gbart analogAI dgront cjeans jteyra Lombardo_7
	Correlated mutations: Advances and limitations. A study on fusion proteins and on the Cohesin-Dockerin families [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 4. (1 June 2006), pp. 832-845. by Inbal Halperin, Haim Wolfson, Ruth Nussinov posted by 12 people dfdong mgomes qluo RebeccaHamer bicko gbart ramensky cjeans tale mingzhi friendpine Lombardo_7
	Influence of conservation on calculations of amino acid covariance in multiple sequence alignments. [My Copy] Proteins, Vol. 56, No. 2. (1 August 2004), pp. 211-221. by Anthony A. Fodor, Richard W. Aldrich posted by 13 people dfdong mgomes qluo RebeccaHamer ana gbart cjeans jlh64 structural_bioinformatics Bioinformatics mingzhi dgront Lombardo_7
	Evolutionarily conserved networks of residues mediate allosteric communication in proteins [My Copy] Nature Structural & Molecular Biology, Vol. 10, No. 1. (16 December 2002), pp. 59-69. by Gurol M. Suel, Steve W. Lockless, Mark A. Wall, Rama Ranganathan posted by 24 people mgomes qluo arjun_citeulike RebeccaHamer ynaito lna dimka marcius eckart_bindewald gbart analogAI nirfriedman dgront caporaso choonpeng efge carlescorbi biomedical-nlp BioinfoCIPF SGU-CIPF mingzhi yalexeev weisblum ca3295
	On the Accuracy of Homology Modeling and Sequence Alignment Methods Applied to Membrane Proteins [My Copy] Biophysical Journal, Vol. 91, No. 2. (15 July 2006), pp. 508-517. by L. Forrest, C. Tang, B. Honig posted by 1 person sebk
	Structural and functional restraints in the evolution of protein families and superfamilies. [My Copy] Biochemical Society transactions, Vol. 37, No. Pt 4. (August 2009), pp. 727-733. by S. Gong, C. L. Worth, G. R. Bickerton, S. Lee, D. Tanramluk, T. L. Blundell posted by 3 people subramani OPIG sebk
	A set of van der Waals and coulombic radii of protein atoms for molecular and solvent-accessible surface calculation, packing evaluation, and docking [My Copy] Proteins: Structure, Function, and Genetics, Vol. 32, No. 1. (1998), pp. 111-127. by Ai-Jun Li, Ruth Nussinov posted by 2 people sebk melo_mcr
	Advances and pitfalls of protein structural alignment [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (27 June 2009), pp. 341-348. by Hitomi Hasegawa, Liisa Holm posted by 9 people dfdong OPIG sebk Orengo Group Journal Picks davidalee dgront sobolevnrm structural_bioinformatics barry
	Transmembrane protein topology prediction using support vector machines [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 159. by Timothy Nugent, David Jones posted by 4 people sebk chocolate2009 TRHvidsten erexhepa
	QMEAN server for protein model quality estimation [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W510-514. by Pascal Benkert, Michael Kunzli, Torsten Schwede posted by 4 people subramani sebk sjcockell cat_hutchinson68
	iMembrane: Homology-Based Membrane-Insertion of Proteins. [My Copy] Bioinformatics (Oxford, England) (23 February 2009) by Sebastian Kelm, Jiye Shi, Charlotte M M. Deane posted by 5 people OPIG sebk friendpine Structural Biology Group TorVergata oteri
	Protein structure determination in living cells by in-cell NMR spectroscopy [My Copy] Nature, Vol. 458, No. 7234. (5 March 2009), pp. 102-105. by Daisuke Sakakibara, Atsuko Sasaki, Teppei Ikeya, et al.Junpei Hamatsu, Tomomi Hanashima, Masaki Mishima, Masatoshi Yoshimasu, Nobuhiro Hayashi, Tsutomu Mikawa, Markus Walchli, Brian O. Smith, Masahiro Shirakawa, Peter Guntert, Yutaka Ito posted by 11 people sebk flbarroso eallain cactus McCammon barry cychen_cite ts3435 neils alexknight absterga
	High-resolution multi-dimensional NMR spectroscopy of proteins in human cells [My Copy] Nature, Vol. 458, No. 7234. (5 March 2009), pp. 106-109. by Kohsuke Inomata, Ayako Ohno, Hidehito Tochio, et al.Shin Isogai, Takeshi Tenno, Ikuhiko Nakase, Toshihide Takeuchi, Shiroh Futaki, Yutaka Ito, Hidekazu Hiroaki, Masahiro Shirakawa posted by 6 people sebk flbarroso cactus neils alexknight absterga
	The prediction of membrane protein structure and genome structural annotation. [My Copy] Comparative and functional genomics, Vol. 4, No. 4. (2003), pp. 406-409. by P. L. Martelli, P. Fariselli, G. Tasco, R. Casadio posted by 1 person sebk
	Inter-residue interactions in protein structures exhibit power-law behavior. [My Copy] Biopolymers, Vol. 89, No. 12. (December 2008), pp. 1174-1178. by J. Gao, Z. Li posted by 1 person sebk
	Prediction of protein structural classes by Chou's pseudo amino acid composition: approached using continuous wavelet transform and principal component analysis. [My Copy] Amino acids (23 August 2008) by Zhan-Chao C. Li, Xi-Bin B. Zhou, Zong Dai, Xiao-Yong Y. Zou posted by 2 people wilbur sebk
	A dual-scale approach toward structure prediction of retinal proteins. [My Copy] Journal of structural biology, Vol. 165, No. 1. (January 2009), pp. 37-46. by C. C. Chen, C. M. Chen posted by 1 person sebk
	Sampling efficiency in explicit and implicit membrane environments studied by peptide folding simulations. [My Copy] Proteins (17 September 2008) by Jakob P P. Ulmschneider, Martin B B. Ulmschneider posted by 1 person sebk
	Detecting remote homologues using scoring matrices calculated from the estimation of amino acid substitution rates of beta-barrel membrane proteins. [My Copy] Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference, Vol. 1 (2008), pp. 1347-1350. by D. Jimenez-Morales, L. Adamian, J. Liang posted by 1 person sebk
	Blind test of physics-based prediction of protein structures. [My Copy] Biophysical journal, Vol. 96, No. 3. (February 2009), pp. 917-924. by M. S. Shell, S. B. Ozkan, V. Voelz, G. A. Wu, K. A. Dill posted by 2 people sebk viktor21614
	Prediction of membrane protein structures with complex topologies using limited constraints [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 5. (3 February 2009), pp. 1409-1414. by P. Barth, B. Wallner, D. Baker posted by 13 people rph dgront OPIG sebk structural_bioinformatics barry krapnik viktor21614 paulschlesinger zwang apaydin agrossfield amishp
	A unified hydrophobicity scale for multispan membrane proteins [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Julia Koehler, Nils Woetzel, René Staritzbichler, Charles R. Sanders, Jens Meiler posted by 3 people sebk RamuAnandakrishnan paulschlesinger
	Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (12 December 2008), 531. by Shashi Pandit, Jeffrey Skolnick posted by 4 people sebk tny biehl reyez
	Comparative analysis of the packing topology of structurally important residues in helical membrane and soluble proteins [My Copy] Protein Engineering, Design and Selection (2 December 2008), gzn074. by Vagmita Pabuwal, Zhijun Li posted by 3 people carlosjavierna sebk viktor21614
	alpha-Helical Topology Prediction and Generation of Distance Restraints in Membrane Proteins [My Copy] Biophys. J., Vol. 95, No. 11. (1 December 2008), pp. 5281-5295. by Scott R. Mcallister, Christodoulos A. Floudas posted by 2 people sebk agrossfield
	Membrane Proteins: From Sequence to Structure [My Copy] Annual Review of Biophysics and Biomolecular Structure, Vol. 23, No. 1. (1994), pp. 167-192. by G. V. Heijne posted by 1 person sebk
	The distribution of positively charged residues in bacterial inner membrane proteins correlates with the trans-membrane topology. [My Copy] The EMBO journal, Vol. 5, No. 11. (November 1986), pp. 3021-3027. by Gunnar von V. Heijne posted by 1 person sebk
	Structural Prediction of Membrane-Bound Proteins [My Copy] European Journal of Biochemistry, Vol. 128, No. 2-3. (1982), pp. 565-575. by Patrick Argos, Mohana J. K. Rao, Paul A. Hargrave posted by 1 person sebk
	Application of molecular dynamics with interproton distance restraints to three-dimensional protein structure determination. A model study of crambin. [My Copy] Journal of molecular biology, Vol. 191, No. 3. (5 October 1986), pp. 523-551. by G. M. Clore, A. T. Brünger, M. Karplus, A. M. Gronenborn posted by 2 people kumar_physics sebk
	Fast detection of common geometric substructure in proteins. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 6, No. 3-4. (r 1999), pp. 313-325. by L. P. Chew, D. Huttenlocher, K. Kedem, J. Kleinberg posted by 1 person sebk
	Comprehensive study on iterative algorithms of multiple sequence alignment [My Copy] Comput. Appl. Biosci., Vol. 11, No. 1. (1 February 1995), pp. 13-18. by Makoto Hirosawa, Yasushi Totoki, Masaki Hoshida, Masato Ishikawa posted by 1 person sebk
	Membrane Protein Structure: Prediction versus Reality [My Copy] Annual Review of Biochemistry, Vol. 76, No. 1. (2007), pp. 125-140. by Arne Elofsson, Gunnar von Heijne posted by 1 person sebk
	Secondary structure formation in model polypeptide chains. [My Copy] Protein engineering, Vol. 7, No. 5. (May 1994), pp. 633-644. by A. Aszódi, W. R. Taylor posted by 1 person sebk
	A fast and sensitive multiple sequence alignment algorithm [My Copy] Comput. Appl. Biosci., Vol. 5, No. 2. (1 April 1989), pp. 115-121. by Martin Vingron, Patrick Argos posted by 1 person sebk
	Computational complexity of multiple sequence alignment with SP-score. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 8, No. 6. (2001), pp. 615-623. by W. Just posted by 1 person sebk
	Phage display technology: clinical applications and recent innovations. [My Copy] Clinical biochemistry, Vol. 35, No. 6. (September 2002), pp. 425-445. by H. M. Azzazy, W. E. Highsmith posted by 1 person sebk
	COMPASS server for remote homology inference. [My Copy] Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007) by Ruslan I. Sadreyev, Ming Tang, Bong-Hyun H. Kim, Nick V. Grishin posted by 2 people martainn sebk
	A general approach for developing system-specific functions to score protein-ligand docked complexes using support vector inductive logic programming [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 69, No. 4. (2007), pp. 823-831. by Ata Amini, Paul J. Shrimpton, Stephen H. Muggleton, Michael J. E. Sternberg posted by 1 person sebk
	Database resources of the National Center for Biotechnology Information [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D5-15. by Eric W. Sayers, Tanya Barrett, Dennis A. Benson, et al.Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, Vadim Miller, Ilene Mizrachi, James Ostell, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko, Jian Ye posted by 9 people couchet vprieto daforerog robert85 References for 3DSim paper Cortel lptolik sebk reyez
	Rational design of highly active and selective ligands for the alpha5beta1 integrin receptor. [My Copy] Chembiochem : a European journal of chemical biology, Vol. 9, No. 9. (16 June 2008), pp. 1397-1407. by D. Heckmann, A. Meyer, B. Laufer, G. Zahn, R. Stragies, H. Kessler posted by 1 person sebk
	Discarding Functional Residues from the Substitution Table Improves Predictions of Active Sites within Three-Dimensional Structures [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (3 October 2008), e1000179. by Sungsam Gong, Tom L. Blundell posted by 8 people sebk ssgong gjuggler joseph_x_zhou zwang bicko massivemayhem reyez
	Protein docking for low-resolution structures [My Copy] Protein Eng., Vol. 8, No. 4. (1 April 1995), pp. 371-378. by Ilya A. Vakser posted by 1 person sebk
	Prediction of helix-helix contacts and interacting helices in polytopic membrane proteins using neural networks [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 74, No. 4. (2009), pp. 857-871. by Angelika Fuchs, Andreas Kirschner, Dmitrij Frishman posted by 3 people dfdong sebk middledomain
	Vertebrate Membrane Proteins: Structure, Function, and Insights from Biophysical Approaches [My Copy] Pharmacological Reviews, Vol. 60, No. 1. (1 March 2008), pp. 43-78. by Daniel J. MÃ¼ller, Nan Wu, Krzysztof Palczewski posted by 3 people lipid_phase_separation xdeupi sebk
	GWFASTA: server for FASTA search in eukaryotic and microbial genomes. [My Copy] BioTechniques, Vol. 33, No. 3. (September 2002) by B. Issac, G. P. Raghava posted by 1 person sebk
	Unraveling Protein Networks with Power Graph Analysis [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108. by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder posted by 27 people colmryan carlk saket diamantis yyby jfr jiny aramesh2 AbnerCYH jmuhlich MatthiasReimann royerloic Ema lptolik kengg roys reyez tmmurali nuin Borelli askrajiv renatomilani stajich Mycology sebk OPIG rsantana
	Prediction of membrane-protein topology from first principles [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 20. (20 May 2008), pp. 7177-7181. by Andreas Bernsel, Håkan Viklund, Jenny Falk, Erik Lindahl, Gunnar von Heijne, Arne Elofsson posted by 6 people OPIG sebk druvus superpyrin sobolevnrm baker-group
	TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates. [My Copy] Bioinformatics (Oxford, England) (11 November 2004) by Gábor E E. Tusnády, Zsuzsanna Dosztányi, István Simon posted by 1 person sebk
	Coarse-Grained MD Simulations of Membrane Protein-Bilayer Self-Assembly [My Copy] Structure, Vol. 16, No. 4. (8 April 2008), pp. 621-630. by Kathryn A. Scott, Peter J. Bond, Anthony Ivetac, Alan P. Chetwynd, Syma Khalid, Mark S. Sansom posted by 4 people choonpeng sobolevnrm baker-group sebk
	Evolutionary potentials: structure specific knowledge-based potentials exploiting the evolutionary record of sequence homologs [My Copy] Genome Biology, Vol. 9, No. 4. (08 April 2008), R68. by Alejandro Panjkovich, Francisco Melo, Marc M. Renom posted by 4 people sebk KeatingJClub kgutwin j3xucite
	The interpretation of protein structures: estimation of static accessibility. [My Copy] J Mol Biol, Vol. 55, No. 3. (14 February 1971), pp. 379-400. by B. Lee, F. M. Richards posted by 4 people dmitry_s_yershov sebk ashaytan bicko
	A model recognition approach to the prediction of all-helical membrane protein structure and topology. [My Copy] Biochemistry, Vol. 33, No. 10. (15 March 1994), pp. 3038-3049. by D. T. Jones, W. R. Taylor, J. M. Thornton posted by 2 people sebk xingxu
	Reliability of transmembrane predictions in whole-genome data [My Copy] FEBS Letters, Vol. 532, No. 3. (18 December 2002), pp. 415-418. by Lukas Kall, Erik L. Sonnhammer posted by 1 person sebk
	OPM: orientations of proteins in membranes database. [My Copy] Bioinformatics, Vol. 22, No. 5. (1 March 2006), pp. 623-625. by M. A. Lomize, A. L. Lomize, I. D. Pogozheva, H. I. Mosberg posted by 1 person sebk
	Matt: Local Flexibility Aids Protein Multiple Structure Alignment. [My Copy] PLoS Comput Biol, Vol. 4, No. 1. (11 January 2008) by Matthew Menke, Bonnie Berger, Lenore Cowen posted by 4 people sebk dimka marti carlk
	Fast procedure for reconstruction of full-atom protein models from reduced representations. [My Copy] Journal of computational chemistry, Vol. 29, No. 9. (15 July 2008), pp. 1460-1465. by Piotr Rotkiewicz, Jeffrey Skolnick posted by 6 people Gabriel439 sebk apaydin rsantana mijam middledomain
	An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction [My Copy] Journal of Molecular Biology, Vol. 275, No. 5. (6 February 1998), pp. 895-916. by Ram Samudrala, John Moult posted by 2 people sebk j3xucite
	Molecular code for transmembrane-helix recognition by the Sec61 translocon. [My Copy] Nature, Vol. 450, No. 7172. (13 December 2007), pp. 1026-1030. by T. Hessa, N. M. Meindl-Beinker, A. Bernsel, et al.H. Kim, Y. Sato, M. Lerch-Bader, I. Nilsson, S. H. White, G. von Heijne posted by 1 person sebk
	Prediction of membrane protein orientation in lipid bilayers: a theoretical approach. [My Copy] J Mol Graph Model, Vol. 20, No. 3. (2001), pp. 235-244. by F. Basyn, B. Charloteaux, A. Thomas, R. Brasseur posted by 1 person sebk
	IMPALA: A simple restraint field to simulate the biological membrane in molecular structure studies [My Copy] Proteins: Structure, Function, and Genetics, Vol. 30, No. 4. (1998), pp. 357-371. by Ph, M. Rahman, R. Brasseur posted by 1 person sebk
	Insertion of X-ray structures of proteins in membranes [My Copy] Journal of Molecular Graphics and Modelling, Vol. 22, No. 1. (September 2003), pp. 11-21. by Frederic Basyn, Benoit Spies, Olivier Bouffioux, Annick Thomas, Robert Brasseur posted by 1 person sebk
	Environment specific substitution tables for thermophilic proteins. [My Copy] BMC Bioinformatics, Vol. 8 Suppl 1 (2007) by K. Mizuguchi, M. Sele, M. V. Cubellis posted by 2 people michaelbarton sebk
	QMEAN: A comprehensive scoring function for model quality assessment. [My Copy] Proteins (11 October 2007) by Pascal Benkert, Silvio C E C. Tosatto, Dietmar Schomburg posted by 5 people cat_hutchinson68 larian j3xucite sebk cdeane
	An efficient conformational sampling method for homology modeling. [My Copy] Proteins (11 October 2007) by Rongsheng Han, Alejandra Leo-Macias, Daniel Zerbino, Ugo Bastolla, Bruno Contreras-Moreira, Angel R R. Ortiz posted by 4 people dimka insectopalo cdeane sebk
	Scoring function accuracy for membrane protein structure prediction. [My Copy] Proteins, Vol. 68, No. 1. (1 July 2007), pp. 67-75. by C. Gao, H. A. Stern posted by 2 people cdeane sebk
	Protein three-dimensional structural databases: domains, structurally aligned homologues and superfamilies. [My Copy] Acta Crystallogr D Biol Crystallogr, Vol. 54, No. Pt 6 Pt 1. (1 November 1998), pp. 1168-1177. by R. Sowdhamini, D. F. Burke, C. Deane, et al.J. F. Huang, K. Mizuguchi, H. A. Nagarajaram, J. P. Overington, N. Srinivasan, R. E. Steward, T. L. Blundell posted by 3 people bicko cdeane sebk
	The role and predicted propensity of conserved proline residues in the 5-HT3 receptor. [My Copy] J Biol Chem, Vol. 276, No. 41. (12 October 2001), pp. 37962-37966. by C. M. Deane, S. C. Lummis posted by 2 people cdeane sebk
	A hidden Markov model for predicting transmembrane helices in protein sequences. [My Copy] Proc Int Conf Intell Syst Mol Biol, Vol. 6 (1998), pp. 175-182. by E. L. Sonnhammer, G. von Heijne, A. Krogh posted by 2 people sebk xingxu
	Unit-vector RMS (URMS) as a tool to analyze molecular dynamics trajectories. [My Copy] Proteins, Vol. 37, No. 4. (1 December 1999), pp. 554-564. by K. Kedem, L. P. Chew, R. Elber posted by 3 people Lombardo_7 sebk nigham
	Benchmarking consensus model quality assessment for protein fold recognition [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (18 September 2007), 345. by Liam Mcguffin posted by 2 people sebk massivemayhem
	High-throughput screening and characterization of clones selected from phage display libraries. [My Copy] Cytometry A, Vol. 71, No. 8. (August 2007), pp. 625-631. by L. Yang, J. P. Nolan posted by 3 people sebk kengg Plantandetc
	Positioning of proteins in membranes: a computational approach. [My Copy] Protein Sci, Vol. 15, No. 6. (June 2006), pp. 1318-1333. by A. L. Lomize, I. D. Pogozheva, M. A. Lomize, H. I. Mosberg posted by 3 people thaliana rsandie sebk
	The protein folding problem: when will it be solved? [My Copy] Curr Opin Struct Biol (13 June 2007) by Ken A A. Dill, S Banu B. Ozkan, Thomas R R. Weikl, John D D. Chodera, Vincent A A. Voelz posted by 9 people flbarroso onufriev wouterboomsma cat_worth cactus Jporci cdeane kalicuta sebk
	On the complexity of multiple sequence alignment. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 1, No. 4. (1994), pp. 337-348. by L. Wang, T. Jiang posted by 6 people bertelsen Lombardo_7 sebk treangen newton1234 yylin
	GROMACS 3.0: a package for molecular simulation and trajectory analysis [My Copy] Journal of Molecular Modeling, Vol. 7, No. 8. (2001), pp. 306-317. by Erik Lindahl, Berk Hess, David van der Spoel posted by 12 people trishul FilipeMaia r2s2 janneb dsmueller choonpeng sebk rabio roland_ewald dIEMoSIRIS MoSi-Rostock tji
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