JeremyZucker's Top Recommendations

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	The Edinburgh human metabolic network reconstruction and its functional analysis. [My Copy] Molecular systems biology, Vol. 3 (2007) by H. Ma, A. Sorokin, A. Mazein, et al.A. Selkov, E. Selkov, O. Demin, I. Goryanin posted by 10 people vpenelle peterli schwartzjmc Garamonfok dullhunk grahamc fishtank cjeans shung mdstobbe
	Regulation of metabolic networks by small molecule metabolites [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (13 March 2007), 88. by Alex Gutteridge, Minoru Kanehisa, Susumu Goto posted by 5 people schwartzjmc marodoc aswin Bioinformatics shung
	Cytoscape: a software environment for integrated models of biomolecular interaction networks. [My Copy] Genome research, Vol. 13, No. 11. (November 2003), pp. 2498-2504. by Paul Shannon, Andrew Markiel, Owen Ozier, et al.Nitin S. Baliga, Jonathan T. Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker posted by 37 people daveGerrard fastjoe23 badi stharward kentz tonamswish janani137 shung schwartzjmc APRegier panghouse robert85 capitall higueruelo shikin daforerog cswinburne thomaskelder nolodie giovenko Stew dragonrez balajis tvdbulck frohike carmaus dagmar natstreet jlh64 dIEMoSIRIS MoSi-Rostock compneur Evangelia pmendes yggdrasil carlk Borelli
	Robust Salmonella metabolism limits possibilities for new antimicrobials [My Copy] Nature, Vol. 440, No. 7082. (16 March 2006), pp. 303-307. by Daniel Becker, Matthias Selbach, Claudia Rollenhagen, et al.Matthias Ballmaier, Thomas F. Meyer, Matthias Mann, Dirk Bumann posted by 5 people schwartzjmc kentsis okarsligil Bioinformatics shung
	The large-scale organization of metabolic networks [My Copy] Nature, Vol. 407, No. 6804. (05 October 2000), pp. 651-654. by H. Jeong, B. Tombor, R. Albert, Z. N. Oltvai, A. L. Barabasi posted by 34 people jmenche tomhebbron asadrahman sergiun GEB dlobo schwartzjmc muraken kentz camster snuppepuppan jpmague mague alexisgallagher bjorns Borelli shivaram lfriedl cmmorel alexg Shirakawa ddahlem gcalda grahamc jrbanga karfunkel dbk-lab kdl Evangelia shung pmendes stefanoallesina shikin dylanwalker
	Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima [My Copy] Science, Vol. 325, No. 5947. (18 September 2009), pp. 1544-1549. by Ying Zhang, Ines Thiele, Dana Weekes, et al.Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley M. Deacon, John Wooley, Scott A. Lesley, Ian A. Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik posted by 14 people michaelbarton venancio schwartzjmc apocapoc eehsanipour riffraff reyez TRHvidsten flbarroso daveGerrard zwang pablocarb phoenixzxl roys
	Connecting extracellular metabolomic measurements to intracellular flux states in yeast [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 37. by Monica Mo, Bernhard Palsson, Markus Herrgard posted by 2 people schwartzjmc michaelbarton
	Large-scale reconstruction and phylogenetic analysis of metabolic environments. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 38. (23 September 2008), pp. 14482-14487. by E. Borenstein, M. Kupiec, M. W. Feldman, E. Ruppin posted by 4 people michaelbarton schwartzjmc skembel stringertheory
	The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli [My Copy] Nature Biotechnology, Vol. 26, No. 6. (06 June 2008), pp. 659-667. by Adam M. Feist, Bernhard posted by 9 people eline_koers schwartzjmc lflorez fishtank ptrobajo BergmanLab michaelbarton TNT AlexanderPico
	Unraveling the complexity of flux regulation: A new method demonstrated for nutrient starvation in Saccharomyces cerevisiae [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 7. (14 February 2006), pp. 2166-2171. by Sergio Rossell, Coen C. van der Weijden, Alexander Lindenbergh, et al.Arjen van Tuijl, Christof Francke, Barbara M. Bakker, Hans V. Westerhoff posted by 5 people schwartzjmc michaelbarton JJJ athleem westoll
	Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry. [My Copy] European journal of biochemistry / FEBS, Vol. 267, No. 17. (September 2000), pp. 5313-5329. by B. Teusink, J. Passarge, C. A. Reijenga, et al.E. Esgalhado, C. C. van der Weijden, M. Schepper, M. C. Walsh, B. M. Bakker, K. van Dam, H. V. Westerhoff, J. L. Snoep posted by 7 people dadiamah schwartzjmc peterli dullhunk pmendes marcio michaelbarton
	Identification and characterization of high-flux-control genes of yeast through competition analyses in continuous cultures. [My Copy] Nature genetics, Vol. 40, No. 1. (23 January 2008), pp. 113-117. by Daniela Delneri, David C. Hoyle, Konstantinos Gkargkas, et al.Emma J. Cross, Bharat Rash, Leo Zeef, Hui-Sun S. Leong, Hazel M. Davey, Andrew Hayes, Douglas B. Kell, Gareth W. Griffith, Stephen G. Oliver posted by 5 people schwartzjmc Annab michaelbarton dbk dbk-lab
	Post-transcriptional Expression Regulation in the Yeast Saccharomyces cerevisiae on a Genomic Scale [My Copy] Mol Cell Proteomics, Vol. 3, No. 11. (1 November 2004), pp. 1083-1092. by Andreas Beyer, Jens Hollunder, Heinz-Peter Nasheuer, Thomas Wilhelm posted by 4 people cgaugain schwartzjmc roys michaelbarton
	Flux balance analysis of a genome-scale yeast model constrained by exometabolomic data allows metabolic system identification of genetically different strains. [My Copy] Biotechnol Prog, Vol. 23, No. 2. (r 2007), pp. 320-326. by T. Cakir, C. Efe, D. Dikicioglu, A. Hortaçsu, B. Kirdar, S. G. Oliver posted by 4 people schwartzjmc cgaugain michaelbarton alexg
	Plasticity of genetic interactions in metabolic networks of yeast [My Copy] PNAS, Vol. 104, No. 7. (13 February 2007), pp. 2307-2312. by Richard Harrison, Balazs Papp, Csaba Pal, Stephen G. Oliver, Daniela Delneri posted by 5 people schwartzjmc benjaminsb michaelbarton edwardmorrissey jiny
	Growth control of the eukaryote cell: a systems biology study in yeast. [My Copy] Journal of biology, Vol. 6, No. 2. (30 April 2007), 4. by Juan I. Castrillo, Leo A. Zeef, David C. Hoyle, et al.Nianshu Zhang, Andrew Hayes, David C. Gardner, Michael J. Cornell, June Petty, Luke Hakes, Leanne Wardleworth, Bharat Rash, Marie Brown, Warwick B. Dunn, David Broadhurst, Kerry O'Donoghue, Svenja S. Hester, Tom P. Dunkley, Sarah R. Hart, Neil Swainston, Peter Li, Simon J. Gaskell, Norman W. Paton, Kathryn S. Lilley, Douglas B. Kell, Stephen G. Oliver posted by 15 people cgaugain mqbphcw3 schwartzjmc neilswainston michaelbarton aalibes alexg dullhunk balabu dylan77 cabbagezs Stew EisenLab roys alanrw
	Global reconstruction of the human metabolic network based on genomic and bibliomic data. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 6. (6 February 2007), pp. 1777-1782. by N. C. Duarte, S. A. Becker, N. Jamshidi, et al.I. Thiele, M. L. Mo, T. D. Vo, R. Srivas, B. Ø. Palsson posted by 11 people vpenelle peterli schwartzjmc michaelbarton dullhunk guhjy balajis alexg raiyar noby steinmetzlab
	Minimum information requested in the annotation of biochemical models (MIRIAM) [My Copy] Nature Biotechnology, Vol. 23, No. 12. (06 December 2005), pp. 1509-1515. by Nicolas L. Novere, Andrew Finney, Michael Hucka, et al.Upinder S. Bhalla, Fabien Campagne, Julio Collado-Vides, Edmund J. Crampin, Matt Halstead, Edda Klipp, Pedro Mendes, Poul Nielsen, Herbert Sauro, Bruce Shapiro, Jacky L. Snoep, Hugh D. Spence, Barry L. Wanner posted by 19 people mtaschuk perkeo irenas jmuhlich bertelsen moonhouse schwartzjmc tjtaylor Vincent_Rouilly allysonlister michaelbarton subhacom dullhunk dagmar lenov dIEMoSIRIS compneur pmendes leilaperie
	Schemes of flux control in a model of Saccharomyces cerevisiae glycolysis. [My Copy] Eur J Biochem, Vol. 269, No. 16. (August 2002), pp. 3894-3904. by L. Pritchard, D. B. Kell posted by 9 people pmendes schwartzjmc peterli michaelbarton dbk LeightonP streptomyces dbk-lab dullhunk
	Pyrazinamide inhibits the eukaryotic-like fatty acid synthetase I (FASI) of Mycobacterium tuberculosis [My Copy] Nature Medicine, Vol. 6, No. 9. (01 September 2000), pp. 1043-1047. by Oren Zimhony, Jeffery S. Cox, John T. Welch, Catherine Vilcheze, William R. Jacobs posted by 1 person jholder
	The Pks13/FadD32 Crosstalk for the Biosynthesis of Mycolic Acids in Mycobacterium tuberculosis [My Copy] Journal of Biological Chemistry, Vol. 284, No. 29. (17 July 2009), pp. 19255-19264. by Sabine Gavalda, Mathieu LÃ©ger, BenoÃ®t van der Rest, et al.Alexandre Stella, Fabienne Bardou, Henri Montrozier, Christian Chalut, Odile Burlet-Schiltz, Hedia Marrakchi, Mamadou DaffÃ©, AnnaÃ¯k QuÃ©mard posted by 1 person jholder
	Structure and function of Rv0130, a conserved hypothetical protein from Mycobacterium tuberculosis. [My Copy] Protein science : a publication of the Protein Society, Vol. 15, No. 10. (October 2006), pp. 2300-2309. by Patrik Johansson, Alina Castell, T. Alwyn Jones, Kristina Bäckbro posted by 1 person jholder
	Heterologous Expression of Mycobacterial Proteins in Saccharomyces cerevisiae Reveals Two Physiologically Functional 3-Hydroxyacyl-Thioester Dehydratases, HtdX and HtdY, in Addition to HadABC and HtdZ [My Copy] J. Bacteriol., Vol. 191, No. 8. (15 April 2009), pp. 2683-2690. by Aner Gurvitz, J. Kalervo Hiltunen, Alexander J. Kastaniotis posted by 1 person jholder
	Identification of a Novel Mycobacterial 3-Hydroxyacyl-Thioester Dehydratase, HtdZ (Rv0130), by Functional Complementation in Yeast [My Copy] J. Bacteriol., Vol. 190, No. 11. (1 June 2008), pp. 4088-4090. by Aner Gurvitz, J. Kalervo Hiltunen, Alexander J. Kastaniotis
	A Mycobacterial Enzyme Essential for Cell Division Synergizes with Resuscitation-Promoting Factor [My Copy] PLoS Pathog, Vol. 4, No. 2. (29 February 2008), e1000001. by Erik C. Hett, Michael C. Chao, Lynn L. Deng, Eric J. Rubin posted by 1 person jholder
	Structural insights into nonribosomal peptide enzymatic assembly lines [My Copy] Nat. Prod. Rep., Vol. 26, No. 8. (2009), pp. 987-1000. by Alexander Koglin, Christopher T. Walsh posted by 1 person jholder
	Comparative genomics of metabolic pathways in <i>Mycobacterium</i> species: gene duplication, gene decay and lateral gene transfer [My Copy] FEMS Microbiology Reviews, Vol. 30, No. 6. (2006), pp. 906-925. by Pradeep R. Marri, John P. Bannantine, Geoffrey B. Golding posted by 1 person jholder
	Kinetic and Structural Analysis of a New Group of Acyl-CoA Carboxylases Found in Streptomyces coelicolor A3(2) [My Copy] J. Biol. Chem., Vol. 277, No. 34. (16 August 2002), pp. 31228-31236. by Lautaro Diacovich, Salvador Peiru, Daniel Kurth, et al.Eduardo Rodriguez, Florencio Podesta, Chaitan Khosla, Hugo Gramajo posted by 1 person jholder
	Structural diversity in the six-fold redundant set of acyl-CoA carboxyltransferases in Mycobacterium tuberculosis [My Copy] FEBS Letters, Vol. 580, No. 30. (22 December 2006), pp. 6898-6902. by S. Holton, S. Kingscott, A. Eddine, S. Kaufmann, M. Wilmanns posted by 1 person jholder
	Identification of a diacylglycerol acyltransferase gene involved in accumulation of triacylglycerol in Mycobacterium tuberculosis under stress. [My Copy] Microbiology (Reading, England), Vol. 152, No. Pt 9. (September 2006), pp. 2717-2725. by Tatiana D. Sirakova, Vinod S. Dubey, Chirajyoti Deb, et al.Jaiyanth Daniel, Tatiana A. Korotkova, Bassam Abomoelak, Pappachan E. Kolattukudy posted by 1 person jholder
	A novel in vitro multiple-stress dormancy model for Mycobacterium tuberculosis generates a lipid-loaded, drug-tolerant, dormant pathogen. [My Copy] PloS one, Vol. 4, No. 6. (2009) by Chirajyoti Deb, Chang-Muk M. Lee, Vinod S. Dubey, et al.Jaiyanth Daniel, Bassam Abomoelak, Tatiana D. Sirakova, Santosh Pawar, Linda Rogers, Pappachan E. Kolattukudy posted by 1 person jholder
	Identification of small RNAs in <i>Mycobacterium tuberculosis</i> [My Copy] Molecular Microbiology, Vol. 73, No. 3. (2009), pp. 397-408. by Kristine B. Arnvig, Douglas B. Young posted by 1 person jholder
	New insight into the mechanism of action of and resistance to isoniazid: interaction of Mycobacterium tuberculosis enoyl-ACP reductase with INH-NADP. [My Copy] Journal of the American Chemical Society, Vol. 129, No. 31. (8 August 2007), pp. 9582-9583. by Argyrides Argyrou, Matthew W. Vetting, John S. Blanchard posted by 1 person jholder
	Functional analysis of a clonal deletion in an epidemic strain of Mycobacterium bovis reveals a role in lipid metabolism [My Copy] Microbiology, Vol. 154, No. 12. (1 December 2008), pp. 3731-3742. by Paul R. Wheeler, Roland Brosch, Nicholas G. Coldham, Jacqueline K. Inwald, Glyn R. Hewinson, Stephen V. Gordon posted by 1 person jholder
	Experimental conditions affect the site of tetrazolium violet reduction in the electron transport chain of Lactococcus lactis [My Copy] Microbiology (11 June 2009), mic.0.029678-0. by Sybille Tachon, Damien Michelon, Emilie Chambellon, et al.Monique Cantonnet, Christine Mezange, Lucy Henno, Remy Cachon, Mireille Yvon posted by 1 person jholder
	BIOCHEMISTRY: An Enzyme Assembly Line [My Copy] Science, Vol. 321, No. 5894. (5 September 2008), pp. 1304-1305. by Janet L. Smith, David H. Sherman posted by 1 person jholder
	The Crystal Structure of a Mammalian Fatty Acid Synthase [My Copy] Science, Vol. 321, No. 5894. (5 September 2008), pp. 1315-1322. by Timm Maier, Marc Leibundgut, Nenad Ban posted by 1 person jholder
	Probing the mechanism of the Mycobacterium tuberculosis beta-ketoacyl-acyl carrier protein synthase III mtFabH: factors influencing catalysis and substrate specificity. [My Copy] The Journal of biological chemistry, Vol. 280, No. 37. (16 September 2005), pp. 32539-32547. by A. K. Brown, S. Sridharan, L. Kremer, et al.S. Lindenberg, L. G. Dover, J. C. Sacchettini, G. S. Besra posted by 1 person jholder
	The Mycobacterium tuberculosis beta-ketoacyl-acyl carrier protein synthase III activity is inhibited by phosphorylation on a single threonine residue. [My Copy] The Journal of biological chemistry, Vol. 284, No. 10. (6 March 2009), pp. 6414-6424. by R. Veyron-Churlet, V. Molle, R. C. Taylor, et al.A. K. Brown, G. S. Besra, I. Zanella-Cléon, K. Fütterer, L. Kremer posted by 1 person jholder
	Analysis of neutral lipid biosynthesis in Streptomyces avermitilis MA-4680 and characterization of an acyltransferase involved herein [My Copy] Applied Microbiology and Biotechnology by Chlud Kaddor, Karolin Biermann, Rainer Kalscheuer, Alexander Steinbüchel posted by 1 person jholder
	Precise genome modification in the crop species Zea mays using zinc-finger nucleases [My Copy] Nature, Vol. 459, No. 7245. (21 May 2009), pp. 437-441. by Vipula K. Shukla, Yannick Doyon, Jeffrey C. Miller, et al.Russell C. Dekelver, Erica A. Moehle, Sarah E. Worden, Jon C. Mitchell, Nicole L. Arnold, Sunita Gopalan, Xiangdong Meng, Vivian M. Choi, Jeremy M. Rock, Ying-Ying Wu, George E. Katibah, Gao Zhifang, David Mccaskill, Matthew A. Simpson, Beth Blakeslee, Scott A. Greenwalt, Holly J. Butler, Sarah J. Hinkley, Lei Zhang, Edward J. Rebar, Philip D. Gregory, Fyodor D. Urnov posted by 3 people jholder dswan jbhiatt
	Deletion of xylR gene enhances expression of xylose isomerase in Streptomyces lividans TK24. [My Copy] Journal of microbiology and biotechnology, Vol. 18, No. 5. (May 2008), pp. 837-844. by G. Y. Heo, W. C. Kim, G. J. Joo, et al.Y. Y. Kwak, J. H. Shin, D. H. Roh, H. D. Park, I. K. Rhee posted by 1 person jholder
	A mutant of Mycobacterium smegmatis defective in the biosynthesis of mycolic acids accumulates meromycolates [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 7. (30 March 1999), pp. 4011-4016. by Jun Liu, Hiroshi Nikaido posted by 1 person jholder
	Engineering of an l -arabinose metabolic pathway in Corynebacterium glutamicum [My Copy] Applied Microbiology and Biotechnology, Vol. 77, No. 5. (1 January 2008), pp. 1053-1062. by Hideo Kawaguchi, Miho Sasaki, Alain Vertès, Masayuki Inui, Hideaki Yukawa posted by 2 people MetabolicModeling jholder
	High-Throughput Phenotypic Characterization of <italic>Pseudomonas aeruginosa</italic> Membrane Transport Genes [My Copy] PLoS Genet, Vol. 4, No. 10. (3 October 2008), e1000211. by Daniel A. Johnson, Sasha G. Tetu, Katherine Phillippy, Joan Chen, Qinghu Ren, Ian T. Paulsen posted by 2 people MetabolicModeling jholder
	Triacylglycerols in prokaryotic microorganisms [My Copy] Applied Microbiology and Biotechnology, Vol. 60, No. 4. (1 December 2002), pp. 367-376. by Alvarez, H. Alvarez, Steinbüchel, A. Steinbüchel posted by 2 people MetabolicModeling jholder
	Crystal structure of the thioesterase domain of human fatty acid synthase inhibited by Orlistat [My Copy] Nat Struct Mol Biol, Vol. 14, No. 8. (08 July 2007), pp. 704-709. by Charles W. Pemble, Lynnette C. Johnson, Steven J. Kridel, W. Todd Lowther posted by 1 person jholder
	Leaving on the lights: host-specific derepression of Mycobacterium tuberculosis gene expression by anti-sigma factor gene mutations [My Copy] Molecular Microbiology, Vol. 62, No. 5. (December 2006), pp. 1217-1219. by Husson, N. Robert posted by 1 person jholder
	Mechanisms of action of isoniazid [My Copy] Molecular Microbiology, Vol. 62, No. 5. (December 2006), pp. 1220-1227. by Graham S. Timmins, Vojo Deretic posted by 1 person jholder
	Regulation of Mycobacterium tuberculosis cell envelope composition and virulence by intramembrane proteolysis [My Copy] Nature, Vol. 436, No. 7049., pp. 406-409. by Hideki Makinoshima, Michael S. Glickman posted by 2 people jholder madhadron
	Automated protein function prediction--the genomic challenge. [My Copy] Briefings in bioinformatics, Vol. 7, No. 3. (23 September 2006), pp. 225-242. by I. Friedberg posted by 16 people michaelbarton kiekyon MarcoAlvarez Keywan idoerg shung tjimenez yas marcius j3xucite cdallett sgoetz bootsy T_lab BioinfoCIPF SGU-CIPF
	Control analysis for autonomously oscillating biochemical networks. [My Copy] Biophysical journal, Vol. 82, No. 1 Pt 1. (January 2002), pp. 99-108. by Karin A. Reijenga, Hans V. Westerhoff, Boris N. Kholodenko, Jacky L. Snoep posted by 1 person schwartzjmc
	Control analysis of glycolytic oscillations. [My Copy] Biophysical chemistry, Vol. 62, No. 1-3. (29 November 1996), pp. 15-24. by M. Bier, B. Teusink, B. N. Kholodenko, H. V. Westerhoff posted by 1 person schwartzjmc
	Control analysis of metabolic networks. 1. Homogeneous functions and the summation theorems for control coefficients. [My Copy] European journal of biochemistry / FEBS, Vol. 174, No. 3. (15 June 1988), pp. 509-513. by C. Giersch posted by 1 person schwartzjmc
	Caveat emptor: limitations of the automated reconstruction of metabolic pathways in Plasmodium [My Copy] Trends in Parasitology, Vol. 25, No. 1. (January 2009), pp. 37-43. by H. Ginsburg posted by 1 person schwartzjmc
	Modelling dynamic processes in yeast [My Copy] Yeast, Vol. 24, No. 11. (2007), pp. 943-959. by Edda Klipp posted by 1 person schwartzjmc
	Saccharomyces cerevisiae and Saccharomyces paradoxus coexist in a natural woodland site in North America and display different levels of reproductive isolation from European conspecifics. [My Copy] FEMS yeast research, Vol. 1, No. 4. (January 2002), pp. 299-306. by Paul D. Sniegowski, Peter G. Dombrowski, Ethan Fingerman posted by 1 person schwartzjmc
	A Genome-scale Metabolic Model of Arabidopsis thaliana and Some of its Properties. [My Copy] Plant physiology (15 September 2009) by Mark G. Poolman, Laurent Miguet, Lee J. Sweetlove, David A. Fell posted by 1 person schwartzjmc
	Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns [My Copy] Genome Research, Vol. 19, No. 10. (October 2009), pp. 1872-1883. by Christoph Kaleta, LuÃs F. de Figueiredo, Stefan Schuster posted by 5 people schwartzjmc daveGerrard TRHvidsten Neuroblastoma fpattyn
	Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics. [My Copy] Cell, Vol. 138, No. 4. (21 August 2009), pp. 795-806. by Paola Picotti, Bernd Bodenmiller, Lukas N. Mueller, Bruno Domon, Ruedi Aebersold posted by 3 people schwartzjmc absterga brianb
	Systems biology reveals new strategies for personalizing cancer medicine and confirms the role of PTEN in resistance to trastuzumab. [My Copy] Cancer research, Vol. 69, No. 16. (15 August 2009), pp. 6713-6720. by Dana Faratian, Alexey Goltsov, Galina Lebedeva, et al.Anatoly Sorokin, Stuart Moodie, Peter Mullen, Charlene Kay, In Hwa H. Um, Simon Langdon, Igor Goryanin, David J. Harrison posted by 5 people karthikraman schwartzjmc bertelsen ericrpaquet frohike
	Glucose and forskolin regulate IAPP gene expression through different signal transduction pathways [My Copy] Am J Physiol Endocrinol Metab, Vol. 281, No. 5. (1 November 2001), pp. E938-945. by Wei-Qun Ding, Eileen Holicky, Laurence J. Miller posted by 1 person schwartzjmc
	Reconstructing metabolic flux vectors from extreme pathways: defining the alpha-spectrum. [My Copy] Journal of theoretical biology, Vol. 224, No. 3. (7 October 2003), pp. 313-324. by Sharon J. Wiback, Radhakrishnan Mahadevan, Bernhard Ø. Palsson posted by 1 person schwartzjmc
	Strategies for efficient disruption of metabolism in Mycobacterium tuberculosis from network analysis. [My Copy] Molecular bioSystems (29 June 2009) by Karthik Raman, Rohit Vashisht, Nagasuma Chandra posted by 1 person schwartzjmc
	Neutral theory (communication arising): The stability of forest biodiversity [My Copy] Nature, Vol. 427, No. 6976. (19 February 2004), pp. 696-696. by Igor Volkov, Jayanth R. Banavar, Amos Maritan, Stephen P. Hubbell posted by 1 person schwartzjmc
	Towards Kinetic Modeling of Global Metabolic Networks: Methylobacterium extorquens AM1 Growth as Validation [My Copy] Chinese Journal of Biotechnology, Vol. 24, No. 6. (June 2008), pp. 980-994. by P. Ao, L. Lee, M. Lidstrom, L. Yin, X. Zhu posted by 1 person schwartzjmc
	Genetic modification of flux for flux prediction of mutants [My Copy] Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1702-1708. by Quanyu Zhao, Hiroyuki Kurata posted by 1 person schwartzjmc
	Mathematical modeling of corticosteroid pharmacogenomics in rat muscle following acute and chronic methylprednisolone dosing. [My Copy] Molecular pharmaceutics, Vol. 5, No. 2. (r 2008), pp. 328-339. by Z. Yao, E. P. Hoffman, S. Ghimbovschi, D. C. Dubois, R. R. Almon, W. J. Jusko posted by 1 person schwartzjmc
	Open-System Nonequilibrium Steady State: Statistical Thermodynamics, Fluctuations, and Chemical Oscillations [My Copy] The Journal of Physical Chemistry B, Vol. 110, No. 31. (1 August 2006), pp. 15063-15074. by Hong Qian posted by 1 person schwartzjmc
	Relationship between thermodynamic driving force and one-way fluxes in reversible processes. [My Copy] PloS one, Vol. 2, No. 1. (2007) by D. A. Beard, H. Qian posted by 1 person schwartzjmc
	Metabolic futile cycles and their functions: a systems analysis of energy and control. [My Copy] Systems biology, Vol. 153, No. 4. (July 2006), pp. 192-200. by H. Qian, D. A. Beard posted by 1 person schwartzjmc
	Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli. [My Copy] Nature chemical biology (28 June 2009) by Bryson D. Bennett, Elizabeth H. Kimball, Melissa Gao, Robin Osterhout, Stephen J. Van Dien, Joshua D. Rabinowitz posted by 1 person schwartzjmc
	The canonical network of autotrophic intermediary metabolism: minimal metabolome of a reductive chemoautotroph. [My Copy] The Biological bulletin, Vol. 216, No. 2. (April 2009), pp. 126-130. by V. Srinivasan, H. J. Morowitz posted by 1 person schwartzjmc
	Global Transcription and Metabolic Flux Analysis of Escherichia coli in Glucose-Limited Fed-Batch Cultivations [My Copy] Appl. Environ. Microbiol., Vol. 74, No. 22. (15 November 2008), pp. 7002-7015. by K. Lemuth, T. Hardiman, S. Winter, et al.D. Pfeiffer, M. A. Keller, S. Lange, M. Reuss, R. D. Schmid, M. Siemann-Herzberg posted by 1 person schwartzjmc
	A temperature-dependent conformational change in D-amino acid oxidase and its effect on catalysis. [My Copy] The Journal of biological chemistry, Vol. 241, No. 10. (25 May 1966), pp. 2347-2357. by V. Massey, B. Curti, H. Ganther posted by 1 person schwartzjmc
	Thermodynamics of stoichiometric biochemical networks in living systems far from equilibrium. [My Copy] Biophysical chemistry, Vol. 114, No. 2-3. (22 April 2005), pp. 213-220. by Hong Qian, Daniel A. Beard posted by 2 people bertelsen schwartzjmc
	Thermodynamically feasible kinetic models of reaction networks. [My Copy] Biophysical journal, Vol. 92, No. 6. (15 March 2007), pp. 1846-1857. by M. Ederer, E. D. Gilles posted by 1 person schwartzjmc
	Dynamics of the interlocked positive feedback loops explaining the robust epigenetic switching in Candida albicans [My Copy] Journal of Theoretical Biology, Vol. 258, No. 1. (07 May 2009), pp. 71-88. by K. Sriram, Sylvain Soliman, François Fages posted by 2 people schwartzjmc balabu
	Fermentative stress adaptation of hybrids within the Saccharomyces sensu stricto complex. [My Copy] International journal of food microbiology, Vol. 122, No. 1-2. (29 February 2008), pp. 188-195. by C. Belloch, S. Orlic, E. Barrio, A. Querol posted by 1 person schwartzjmc
	Molecular characterization of new natural hybrids of Saccharomyces cerevisiae and S. kudriavzevii in brewing. [My Copy] Applied and environmental microbiology, Vol. 74, No. 8. (April 2008), pp. 2314-2320. by S. S. González, E. Barrio, A. Querol posted by 1 person schwartzjmc
	Functional States of the genome-scale Escherichia coli transcriptional regulatory system. [My Copy] PLoS computational biology, Vol. 5, No. 6. (5 June 2009), e1000403. by Erwin P. Gianchandani, Andrew R. Joyce, Bernhard Ø. Palsson, Jason A. Papin posted by 4 people schwartzjmc roys TRHvidsten trfield
	Effects of temperature, pH and sugar concentration on the growth parameters of Saccharomyces cerevisiae, S. kudriavzevii and their interspecific hybrid [My Copy] International Journal of Food Microbiology, Vol. 131, No. 2-3. (31 May 2009), pp. 120-127. by Noé F. Arroyo-López, Sandi Orlić, Amparo Querol, Eladio Barrio posted by 1 person schwartzjmc
	Chimeric genomes of natural hybrids of Saccharomyces cerevisiae and Saccharomyces kudriavzevii. [My Copy] Applied and environmental microbiology, Vol. 75, No. 8. (April 2009), pp. 2534-2544. by C. Belloch, R. Pérez-Torrado, S. S. González, et al.J. E. Pérez-Ortín, J. García-Martínez, A. Querol, E. Barrio posted by 1 person schwartzjmc
	Blinded by the Light: The Growing Complexity of p53. [My Copy] Cell, Vol. 137, No. 3. (1 May 2009), pp. 413-431. by Karen H. Vousden, Carol Prives posted by 2 people schwartzjmc guhjy
	A Role for Casein Kinase 2 in the Mechanism Underlying Circadian Temperature Compensation [My Copy] Cell, Vol. 137, No. 4. (15 May 2009), pp. 749-760. by Arun Mehra, Mi Shi, Christopher L. Baker, Hildur V. Colot, Jennifer J. Loros, Jay C. Dunlap posted by 1 person schwartzjmc
	Similarity-based virtual screening using 2D fingerprints [My Copy] Drug Discovery Today, Vol. 11, No. 23-24. (December 2006), pp. 1046-1053. by P. Willett posted by 3 people pimmy Scis0000002 schwartzjmc
	Elucidation and structural analysis of conserved pools for genome-scale metabolic reconstructions. [My Copy] Biophysical journal, Vol. 88, No. 1. (January 2005), pp. 37-49. by E. V. Nikolaev, A. P. Burgard, C. D. Maranas posted by 1 person schwartzjmc
	Detection of stoichiometric inconsistencies in biomolecular models. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 19. (1 October 2008), pp. 2245-2251. by A. Gevorgyan, M. G. Poolman, D. A. Fell posted by 1 person schwartzjmc
	Computational modelling suggests dynamic interactions between Ca2+, IP3 and G protein-coupled modules are key to robust Dictyostelium aggregation [My Copy] Mol. BioSyst., Vol. 5, No. 6. (2009), pp. 612-628. by Najl V. Valeyev, Jung-Su Kim, Pat J. S. Heslop-Harrison, Ian Postlethwaite, Nicolay V. Kotov, Declan G. Bates posted by 1 person schwartzjmc
	The effect of network topology on the stability of discrete state models of genetic control [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 20. (19 May 2009), pp. 8209-8214. by Andrew Pomerance, Edward Ott, Michelle Girvan, Wolfgang Losert posted by 6 people rdiaz megraw trfield schwartzjmc TRHvidsten deanmalmgren
	Phylophenetic properties of metabolic pathway topologies as revealed by global analysis [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006), 252. by Yong Zhang, Shaojuan Li, Geir Skogerbo, et al.Zhihua Zhang, Xiaopeng Zhu, Zefeng Zhang, Shiwei Sun, Hongchao Lu, Baochen Shi, Runsheng Chen posted by 1 person schwartzjmc
	Comparative genome-scale metabolic reconstruction and flux balance analysis of multiple Staphylococcus aureus genomes identify novel anti-microbial drug targets. [My Copy] Journal of bacteriology (17 April 2009) by Deok-Sun S. Lee, Henry Burd, Jiangxia Liu, et al.Eivind Almaas, Olaf Wiest, Albert-László L. Barabási, Zoltán N N. Oltvai, Vinayak Kapatral posted by 1 person schwartzjmc
	Boolean network-based analysis of the apoptosis network: irreversible apoptosis and stable surviving. [My Copy] Journal of theoretical biology, Vol. 259, No. 4. (21 August 2009), pp. 760-769. by Zhongxing Mai, Haiyan Liu posted by 2 people schwartzjmc agonzale
	Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6477-6482. by Joel F. Moxley, Michael C. Jewett, Maciek R. Antoniewicz, et al.Silas G. Villas-Boas, Hal Alper, Robert T. Wheeler, Lily Tong, Alan G. Hinnebusch, Trey Ideker, Jens Nielsen, Gregory Stephanopoulos posted by 2 people schwartzjmc carlk
	The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. [My Copy] Nature genetics, Vol. 41, No. 5. (19 May 2009), pp. 553-562. by FANTOM Consortium, Harukazu Suzuki, Alistair R. Forrest, et al.Erik van Nimwegen, Carsten O. Daub, Piotr J. Balwierz, Katharine M. Irvine, Timo Lassmann, Timothy Ravasi, Yuki Hasegawa, Michiel J. de Hoon, Shintaro Katayama, Kate Schroder, Piero Carninci, Yasuhiro Tomaru, Mutsumi Kanamori-Katayama, Atsutaka Kubosaki, Altuna Akalin, Yoshinari Ando, Erik Arner, Maki Asada, Hiroshi Asahara, Timothy Bailey, Vladimir B. Bajic, Denis Bauer, Anthony G. Beckhouse, Nicolas Bertin, Johan Björkegren, Frank Brombacher, Erika Bulger, Alistair M. Chalk, Joe Chiba, Nicole Cloonan, Adam Dawe, Josee Dostie, Pär G. Engström, Magbubah Essack, Geoffrey J. Faulkner, J. Lynn Fink, David Fredman, Ko Fujimori, Masaaki Furuno, Takashi Gojobori, Julian Gough, Sean M. Grimmond, Mika Gustafsson, Megumi Hashimoto, Takehiro Hashimoto, Mariko Hatakeyama, Susanne Heinzel, Winston Hide, Oliver Hofmann, Michael Hörnquist, Lukasz Huminiecki, Kazuho Ikeo, Naoko Imamoto, Satoshi Inoue, Yusuke Inoue, Ryoko Ishihara, Takao Iwayanagi, Anders Jacobsen, Mandeep Kaur, Hideya Kawaji, Markus C. Kerr, Ryuichiro Kimura, Syuhei Kimura, Yasumasa Kimura, Hiroaki Kitano, Hisashi Koga, Toshio Kojima, Shinji Kondo, Takeshi Konno, Anders Krogh, Adele Kruger, Ajit Kumar, Boris Lenhard, Andreas Lennartsson, Morten Lindow, Marina Lizio, Cameron Macpherson, Norihiro Maeda, Christopher A. Maher, Monique Maqungo, Jessica Mar, Nicholas A. Matigian, Hideo Matsuda, John S. Mattick, Stuart Meier, Sei Miyamoto, Etsuko Miyamoto-Sato, Kazuhiko Nakabayashi, Yutaka Nakachi, Mika Nakano, Sanne Nygaard, Toshitsugu Okayama, Yasushi Okazaki, Haruka Okuda-Yabukami, Valerio Orlando, Jun Otomo, Mikhail Pachkov, Nikolai Petrovsky, Charles Plessy, John Quackenbush, Aleksandar Radovanovic, Michael Rehli, Rintaro Saito, Albin Sandelin, Sebastian Schmeier, Christian Schönbach, Ariel S. Schwartz, Colin A. Semple, Miho Sera, Jessica Severin, Katsuhiko Shirahige, Cas Simons, George St Laurent, Masanori Suzuki, Takahiro Suzuki, Matthew J. Sweet, Ryan J. Taft, Shizu Takeda, Yoichi Takenaka, Kai Tan, Martin S. Taylor, Rohan D. Teasdale, Jesper Tegnér, Sarah Teichmann, Eivind Valen, Claes Wahlestedt, Kazunori Waki, Andrew Waterhouse, Christine A. Wells, Ole Winther, Linda Wu, Kazumi Yamaguchi, Hiroshi Yanagawa, Jun Yasuda, Mihaela Zavolan, David A. Hume, Riken Omics Science Center, Takahiro Arakawa, Shiro Fukuda, Kengo Imamura, Chikatoshi Kai, Ai Kaiho, Tsugumi Kawashima, Chika Kawazu, Yayoi Kitazume, Miki Kojima, Hisashi Miura, Kayoko Murakami, Mitsuyoshi Murata, Noriko Ninomiya, Hiromi Nishiyori, Shohei Noma, Chihiro Ogawa, Takuma Sano, Christophe Simon, Michihira Tagami, Yukari Takahashi, Jun Kawai, Yoshihide Hayashizaki posted by 16 people schwartzjmc rdiaz rsaito guhjy hagechouchin443 gdb tonamswish burak YukaH coela mtagaya bertelsen xingxu TRHvidsten renatomilani antonkratz
	Pulsatile Stimulation Determines Timing and Specificity of NF-kappaB-Dependent Transcription [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 242-246. by Louise Ashall, Caroline A. Horton, David E. Nelson, et al.Pawel Paszek, Claire V. Harper, Kate Sillitoe, Sheila Ryan, David G. Spiller, John F. Unitt, David S. Broomhead, Douglas B. Kell, David A. Rand, Violaine See, Michael R. H. White posted by 6 people arne schwartzjmc rbweinbe booker dullhunk kentsis
	Local and global modes of drug action in biochemical networks [My Copy] BMC Chemical Biology, Vol. 9 (07 April 2009), 4. by Jean-Marc Schwartz, Jose C. Nacher posted by 2 people schwartzjmc renatomilani
	Modular decomposition of metabolic systems via null-space analysis. [My Copy] Journal of theoretical biology, Vol. 249, No. 4. (21 December 2007), pp. 691-705. by M. G. Poolman, C. Sebu, M. K. Pidcock, D. A. Fell posted by 2 people schwartzjmc yujiangwang
	Analysis of sucrose accumulation in the sugar cane culm on the basis of in vitro kinetic data. [My Copy] The Biochemical journal, Vol. 358, No. Pt 2. (1 September 2001), pp. 437-445. by J. M. Rohwer, F. C. Botha posted by 1 person schwartzjmc
	Metabolic Reconstruction and Modeling of Nitrogen Fixation in <named-content xmlns:xlink="http://www.w3.org/1999/xlink" content-type="genus-species" xlink:type="simple">Rhizobium etli</named-content> [My Copy] PLoS Comput Biol, Vol. 3, No. 10. (5 October 2007), e192. by Osbaldo Resendis-Antonio, Jennifer L. Reed, Sergio Encarnación, Julio Collado-Vides, Bernhard Palsson posted by 2 people schwartzjmc akraemer