Katje's Top Recommendations

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	Functional metagenomic profiling of nine biomes [My Copy] Nature, Vol. 452, No. 7187. (12 March 2008), pp. 629-632. by Elizabeth A. Dinsdale, Robert A. Edwards, Dana Hall, et al.Florent Angly, Mya Breitbart, Jennifer M. Brulc, Mike Furlan, Christelle Desnues, Matthew Haynes, Linlin Li, Lauren McDaniel, Mary A. Moran, Karen E. Nelson, Christina Nilsson, Robert Olson, John Paul, Beltran R. Brito, Yijun Ruan, Brandon K. Swan, Rick Stevens, David L. Valentine, Rebecca V. Thurber, Linda Wegley, Bryan A. White, Forest Rohwer posted by 24 people idoerg Thaverkamp shuzhens Savage Lab, UCLA anphony michaelbarton azazello skembel guhjy djkt neils kinestetika microbiology_nijmegen bluto oelemento alexisfjdufresne vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group jmeppley vrich jlgreen Green Lab iSEEM
	Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers [My Copy] Nucl. Acids Res., Vol. 36, No. 18. (1 October 2008), e120. by Zongzhi Liu, Todd Z. Desantis, Gary L. Andersen, Rob Knight posted by 9 people esyoun skembel sconlan ojabado Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot iSEEM jlgreen
	The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity. [My Copy] The ISME journal (8 May 2008) by Stephen J J. Bent, Larry J J. Forney posted by 12 people lorenalizarraga80 microrita druvus Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot jdelcampo jlgreen Green Lab iSEEM djkt skembel
	Comparative systems biology across an evolutionary gradient within the Shewanella genus [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 37. (15 September 2009), pp. 15909-15914. by Konstantinos T. Konstantinidis, Margrethe H. Serres, Margaret F. Romine, et al.Jorge L. M. Rodrigues, Jennifer Auchtung, Lee-Ann McCue, Mary S. Lipton, Anna Obraztsova, Carol S. Giometti, Kenneth H. Nealson, James K. Fredrickson, James M. Tiedje posted by 3 people kinestetika skembel maren
	Whole Genome Amplification and De novo Assembly of Single Bacterial Cells [My Copy] PLoS ONE, Vol. 4, No. 9. (2 September 2009), e6864. by Sébastien Rodrigue, Rex R. Malmstrom, Aaron M. Berlin, Bruce W. Birren, Matthew R. Henn, Sallie W. Chisholm posted by 5 people Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot kinestetika chrisvanlang
	Expanding Oxygen-Minimum Zones in the Tropical Oceans [My Copy] Science, Vol. 320, No. 5876. (2 May 2008), pp. 655-658. by Lothar Stramma, Gregory C. Johnson, Janet Sprintall, Volker Mohrholz posted by 5 people kinestetika microbiology_nijmegen vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000m vertical profile in the North Pacific Subtropical Gyre [My Copy] Environmental Microbiology, Vol. 10, No. 9. (September 2008), pp. 2313-2330. by Pham, D. Vinh, Konstantinidis, et al.T. Konstantinos, Palden, Tsultrim, Delong, F. Edward posted by 5 people iSEEM skembel Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot
	Metagenomics reveals our incomplete knowledge of global diversity. [My Copy] Bioinformatics (Oxford, England) (13 July 2008) by Miguel Pignatelli, Gabriel Aparicio, Ignacio Blanquer, Vicente Hernández, Andrés Moya, Javier Tamames posted by 14 people hwright Thaverkamp jmeppley microrita skembel druvus Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot reyez iSEEM djkt bootsy nuin
	From the Cover: A latitudinal diversity gradient in planktonic marine bacteria [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 22. (3 June 2008), pp. 7774-7778. by Jed A. Fuhrman, Joshua A. Steele, Ian Hewson, et al.Michael S. Schwalbach, Mark V. Brown, Jessica L. Green, James H. Brown posted by 11 people hwright paulm skembel skato_toyaku jlgreen Green Lab iSEEM vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group djkt
	Microbial Biogeography: From Taxonomy to Traits [My Copy] Science, Vol. 320, No. 5879. (23 May 2008), pp. 1039-1043. by Jessica L. Green, Brendan J. Bohannan, Rachel J. Whitaker posted by 16 people hwright skembel Savage Lab, UCLA anphony druvus stajich Mycology vaulot Papers recommended by the Roscoff Plankton Group dbikard Centre de Recherches Interdisciplinaires djkt jdelcampo Microbial-Ecology dbensasson iSEEM
	Microbial community gene expression in ocean surface waters [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 10. (11 March 2008), pp. 3805-3810. by Jorge Frias-Lopez, Yanmei Shi, Gene W. Tyson, et al.Maureen L. Coleman, Stephan C. Schuster, Sallie W. Chisholm, Edward F. DeLong posted by 14 people hwright druvus elbrodie idoerg bluto skembel mcox tmmurali vaulot mjetten microbiology_nijmegen jlgreen Green Lab iSEEM
	Metagenomics: Read Length Matters [My Copy] Appl. Environ. Microbiol., Vol. 74, No. 5. (1 March 2008), pp. 1453-1463. by K. Eric Wommack, Jaysheel Bhavsar, Jacques Ravel posted by 16 people jbhiatt skembel Papers recommended by the Roscoff Plankton Group vaulot djkt iSEEM jmeppley azazello Microbial-Ecology microbiology_nijmegen Thaverkamp skato_toyaku rvgomes alexisfjdufresne alexl bluto
	XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (07 October 2008), 420. by Daniel Frank posted by 9 people Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot iSEEM jlgreen Thaverkamp treangen ojabado nuin
	Widespread distribution of proteorhodopsins in freshwater and brackish ecosystems. [My Copy] The ISME journal (27 March 2008) by Nof Atamna-Ismaeel, Gazalah Sabehi, Itai Sharon, et al.Karl-Paul P. Witzel, Matthias Labrenz, Klaus Jürgens, Tamar Barkay, Maayke Stomp, Jef Huisman, Oded Beja posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Biology's next revolution [My Copy] Nature, Vol. 445, No. 7126. (25 January 2007), pp. 369-369. by Nigel Goldenfeld, Carl Woese posted by 16 people acrmartins Adso danilov microbiology_nijmegen kinestetika kehan mattjb jmrivort karfunkel biodiversity_conservation Bioinformatics ComplexAdaptiveSystems DSTO-CAS G-quadruplex Supramolecular GrassBase
	Examining bacterial species under the specter of gene transfer and exchange. [My Copy] Proc Natl Acad Sci U S A, Vol. 102 Suppl 1 (3 May 2005), pp. 6595-6599. by H. Ochman, E. Lerat, V. Daubin posted by 6 people jmeppley balajis AaronDarling treangen manzanita kinestetika
	Seasonality and vertical structure of microbial communities in an ocean gyre [My Copy] The ISME Journal, Vol. 3, No. 10. (04 June 2009), pp. 1148-1163. by Alexander H. Treusch, Kevin L. Vergin, Liam A. Finlay, et al.Michael G. Donatz, Robert M. Burton, Craig A. Carlson, Stephen J. Giovannoni posted by 2 people kinestetika skembel
	Accurate determination of microbial diversity from 454 pyrosequencing data. [My Copy] Nature methods, Vol. 6, No. 9. (09 September 2009), pp. 639-641. by Christopher Quince, Anders Lanzén, Thomas P. Curtis, et al.Russell J. Davenport, Neil Hall, Ian M. Head, L. Fiona Read, William T. Sloan posted by 10 people halinat kinestetika jgill jonilaserson iSEEM skembel druvus orzenil Bioinformatics danmaclean
	Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2878-2881. by Bas E. Dutilh, Martijn A. Huynen, Marc Strous posted by 9 people dakelley druvus kinestetika ThomasDOtto jasontsai skembel iSEEM sharpton jmeppley
	Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre [My Copy] Environmental Microbiology, Vol. 11, No. 6. (2009), pp. 1358-1375. by Rachel S. Poretsky, Ian Hewson, Shulei Sun, Andrew E. Allen, Jonathan P. Zehr, Mary A. Moran posted by 5 people kinestetika jmeppley skembel iSEEM djkt
	Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic [My Copy] Nature (26 November 2008) by Hélène Agogu￩, Maaike Brink, Julie Dinasquet, Gerhard J. Herndl posted by 6 people skembel iSEEM djkt microbiology_nijmegen kinestetika neils
	The bacterial species definition in the genomic era. [My Copy] Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1475. (29 November 2006), pp. 1929-1940. by K. T. Konstantinidis, A. Ramette, J. M. Tiedje posted by 10 people druvus AaronDarling skembel treangen iSEEM jmeppley kinestetika Microbial-Ecology microbiology_nijmegen Thaverkamp
	The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific [My Copy] PLoS Biol, Vol. 5, No. 3. (13 March 2007), e77. by Douglas B. Rusch, Aaron L. Halpern, Granger Sutton, et al.Karla B. Heidelberg, Shannon Williamson, Shibu Yooseph, Dongying Wu, Jonathan A. Eisen, Jeff M. Hoffman, Karin Remington, Karen Beeson, Bao Tran, Hamilton Smith, Holly Baden-Tillson, Clare Stewart, Joyce Thorpe, Jason Freeman, Cynthia Andrews-Pfannkoch, Joseph E. Venter, Kelvin Li, Saul Kravitz, John F. Heidelberg, Terry Utterback, Yu-Hui Rogers, Luisa I. Falcón, Valeria Souza, Germán Bonilla-Rosso, Luis E. Eguiarte, David M. Karl, Shubha Sathyendranath, Trevor Platt, Eldredge Bermingham, Victor Gallardo, Giselle Tamayo-Castillo, Michael R. Ferrari, Robert L. Strausberg, Kenneth Nealson, Robert Friedman, Marvin Frazier, J. Craig Venter posted by 23 people antonkratz dakelley maria_hauser mlangill AaronDarling azazello skembel aramata jmeppley kaspermunch michC jdelcampo stajich skoch3 beatrizfernandez kinestetika Bioinformatics Microbial-Ecology Koch_Lab microbiology_nijmegen Thaverkamp djkt iSEEM
	Microbial diversity in the deep sea and the underexplored "rare biosphere". [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 32. (8 August 2006), pp. 12115-12120. by Mitchell L. Sogin, Hilary G. Morrison, Julie A. Huber, et al.David Mark Welch, Susan M. Huse, Phillip R. Neal, Jesus M. Arrieta, Gerhard J. Herndl posted by 15 people hwright jbhiatt iSEEM skembel skato_toyaku jmeppley balicea madhadron rabu bluto xingxu kinestetika microbiology_nijmegen mcox Olaf_Ilzins
	Environmental Genome Shotgun Sequencing of the Sargasso Sea [My Copy] Science, Vol. 304, No. 5667. (2 April 2004), pp. 66-74. by J. Craig Venter, Karin Remington, John F. Heidelberg, et al.Aaron L. Halpern, Doug Rusch, Jonathan A. Eisen, Dongying Wu, Ian Paulsen, Karen E. Nelson, William Nelson, Derrick E. Fouts, Samuel Levy, Anthony H. Knap, Michael W. Lomas, Ken Nealson, Owen White, Jeremy Peterson, Jeff Hoffman, Rachel Parsons, Holly Baden-Tillson, Cynthia Pfannkoch, Yu-Hui Rogers, Hamilton O. Smith posted by 23 people skembel esyoun Thaverkamp jbhiatt microbiology_nijmegen kinestetika knaseanka eoghanharr johanviklund bpb jmeppley balajis eweaver AaronDarling bluto jdelcampo azazello beatrizfernandez wenhan Microbial-Ecology pradiptaray mcox vrich
	Inference of Microbial Recombination Rates from Metagenomic Data [My Copy] PLoS Genet, Vol. 5, No. 10. (2 October 2009), e1000674. by Philip L. F. Johnson, Montgomery Slatkin posted by 5 people iSEEM djkt druvus kinestetika maren
	Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria [My Copy] ISME J, Vol. 3, No. 6. (26 February 2009), pp. 726-737. by Adrian K. Sharma, Katrin Sommerfeld, George S. Bullerjahn, et al.Audrey R. Matteson, Steven W. Wilhelm, Jan Jezbera, Ulrike Brandt, W. Ford Doolittle, Martin W. Hahn posted by 1 person kinestetika
	Application of 'next-generation' sequencing technologies to microbial genetics [My Copy] Nat Rev Micro, Vol. advanced online publication, No. 4. (23 February 2009), pp. 287-296. by Daniel MacLean, Jonathan D. G. Jones, David J. Studholme posted by 11 people nfparrish n00c kinestetika katholt iSEEM jlgreen roys robsyme hpaces druvus jmeppley
	Real-Time DNA Sequencing from Single Polymerase Molecules [My Copy] Science, Vol. 323, No. 5910. (2 January 2009), pp. 133-138. by John Eid, Adrian Fehr, Jeremy Gray, et al.Khai Luong, John Lyle, Geoff Otto, Paul Peluso, David Rank, Primo Baybayan, Brad Bettman, Arkadiusz Bibillo, Keith Bjornson, Bidhan Chaudhuri, Frederick Christians, Ronald Cicero, Sonya Clark, Ravindra Dalal, Alex deWinter, John Dixon, Mathieu Foquet, Alfred Gaertner, Paul Hardenbol, Cheryl Heiner, Kevin Hester, David Holden, Gregory Kearns, Xiangxu Kong, Ronald Kuse, Yves Lacroix, Steven Lin, Paul Lundquist, Congcong Ma, Patrick Marks, Mark Maxham, Devon Murphy, Insil Park, Thang Pham, Michael Phillips, Joy Roy, Robert Sebra, Gene Shen, Jon Sorenson, Austin Tomaney, Kevin Travers, Mark Trulson, John Vieceli, Jeffrey Wegener, Dawn Wu, Alicia Yang, Denis Zaccarin, Peter Zhao, Frank Zhong, Jonas Korlach, Stephen Turner posted by 42 people hzoltan operon n00c kinestetika mtagaya iSEEM jlgreen dna idoerg absterga lukzky ImranRaoufMalik Archaeogenetics inesdesantiago 7ac5 wimufi cactus jasontsai mlangill melting polivares pkonings natstreet fhalbrit druvus felsani moernerlab samjlord Bioinformatics - CRUK Stew ghattem nedwards myzhang pengchy jbhiatt GeeSharpMinor GustavoLacerda azazello sconlan alexknight emptyhb caseybrown
	Highly divergent genes for methanopterin-linked C1 transfer reactions in Lake Washington, assessed via metagenomic analysis and mRNA detection. [My Copy] Appl Environ Microbiol, Vol. 71, No. 12. (December 2005), pp. 8846-8854. by M. G. Kalyuzhnaya, S. Bowerman, O. Nercessian, M. E. Lidstrom, L. Chistoserdova posted by 2 people kinestetika microbiology_nijmegen
	Genomics, environmental genomics and the issue of microbial species [My Copy] Heredity, Vol. aop, No. current. by D. M. Ward, F. M. Cohan, D. Bhaya, J. F. Heidelberg, M. Kühl, A. Grossman posted by 5 people druvus kinestetika Microbial-Ecology microbiology_nijmegen Thaverkamp
	Application of Phylogenetic Networks in Evolutionary Studies [My Copy] Mol Biol Evol, Vol. 23, No. 2. (1 February 2006), pp. 254-267. by Daniel H. Huson, David Bryant posted by 13 people seekerwjk wiedenhoeft fierykylin Moma davidchavalarias druvus treangen cvernesi kinestetika cndewey microbiology_nijmegen dandaman ArtemPankin
	Global patterns in bacterial diversity [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 27. (3 July 2007), pp. 11436-11440. by Catherine A. Lozupone, Rob Knight posted by 3 people jonathaneisen iSEEM skembel
	Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton [My Copy] Science, Vol. 320, No. 5879. (23 May 2008), pp. 1081-1085. by Dana E. Hunt, Lawrence A. David, Dirk Gevers, Sarah P. Preheim, Eric J. Alm, Martin F. Polz posted by 6 people karinlag yonatanf skembel jlgreen Green Lab iSEEM
	Counting the Uncountable: Statistical Approaches to Estimating Microbial Diversity [My Copy] Appl. Environ. Microbiol., Vol. 67, No. 10. (1 October 2001), pp. 4399-4406. by Jennifer B. Hughes, Jessica J. Hellmann, Taylor H. Ricketts, Brendan J. Bohannan posted by 9 people jmeppley Stenuite andrewirwin Biological oceanography vrich mcox Olaf_Ilzins djkt iSEEM
	ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2737-2738. by Erik Kristiansson, Philip Hugenholtz, Daniel Dalevi posted by 6 people operon jmeppley dswan skembel iSEEM djkt
	The microbial ocean from genomes to biomes [My Copy] Nature, Vol. 459, No. 7244. (14 May 2009), pp. 200-206. by Edward F. Delong posted by 9 people roys jmeppley Mycology stajich Thaverkamp neils iSEEM djkt skembel
	Microbial community structure and its functional implications [My Copy] Nature, Vol. 459, No. 7244. (14 May 2009), pp. 193-199. by Jed A. Fuhrman posted by 6 people hwright jmeppley Thaverkamp iSEEM djkt skembel
	FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix [My Copy] Mol Biol Evol, Vol. 26, No. 7. (1 July 2009), pp. 1641-1650. by Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin posted by 11 people druvus houniao007 pyilmaz rneches iSEEM djkt Journal picks ppgardne jwm skembel nuin
	Phylogenetic Signals in DNA Composition: Limitations and Prospects [My Copy] Mol Biol Evol, Vol. 26, No. 5. (1 May 2009), pp. 1163-1169. by Jan Mrazek posted by 7 people dakelley jmeppley skembel iSEEM djkt druvus nuin
	Prokaryotic Genomes and Diversity in Surface Ocean Waters: Interrogating the Global Ocean Sampling Metagenome [My Copy] Appl. Environ. Microbiol., Vol. 75, No. 7. (1 April 2009), pp. 2221-2229. by Erin J. Biers, Shulei Sun, Erinn C. Howard posted by 4 people iSEEM skembel Thaverkamp EKotlarska
	RAMI, a tool for identification and characterization of phylogenetic clusters in microbial communities [My Copy] Bioinformatics (17 February 2009), btp051. by Thomas Pommier, Bjorn Canback, Per Lundberg, Ake Hagstrom, Anders Tunlid posted by 7 people elbrodie hpaces phylocom skembel sriesenfeld iSEEM djkt
	Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (2009) by Stephen Smith, Jeremy Beaulieu, Michael Donoghue posted by 8 people rs Schmidtc iSEEM djkt Mycology stajich skembel druvus
	Missing Data, Incomplete Taxa, and Phylogenetic Accuracy [My Copy] Syst Biol, Vol. 52, No. 4. (1 August 2003), pp. 528-538. by John J. Wiens posted by 1 person skembel
	Probing Metagenomics by Rapid Cluster Analysis of Very Large Datasets [My Copy] PLoS ONE, Vol. 3, No. 10. (10 October 2008), e3375. by Weizhong Li, John C. Wooley, Adam Godzik posted by 3 people skembel azazello reyez
	MetaSim—A Sequencing Simulator for Genomics and Metagenomics [My Copy] PLoS ONE, Vol. 3, No. 10. (8 October 2008), e3373. by Daniel C. Richter, Felix Ott, Alexander F. Auch, Ramona Schmid, Daniel H. Huson posted by 13 people jonilaserson BergmanLab polivares michaelbarton idoerg sriesenfeld iSEEM skembel guhjy azazello hpaces druvus nuin
	The convergence of carbohydrate active gene repertoires in human gut microbes [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 39. (30 September 2008), pp. 15076-15081. by Catherine A. Lozupone, Micah Hamady, Brandi L. Cantarel, et al.Pedro M. Coutinho, Bernard Henrissat, Jeffrey I. Gordon, Rob Knight posted by 7 people cmzmasek sharpton Thaverkamp iSEEM djkt skembel sg45653
	Signature Genes as a Phylogenomic Tool. [My Copy] Molecular biology and evolution (19 May 2008) by Bas E E. Dutilh, Berend Snel, Thijs J G J. Ettema, Martijn A A. Huynen posted by 6 people sriesenfeld iSEEM skembel mjetten anammox microbiology_nijmegen
	Disentangling interactions between adaptive divergence and gene flow when ecology drives diversification [My Copy] Ecology Letters, Vol. 11, No. 6. (June 2008), pp. 624-636. by Katja Räsänen, Andrew P. Hendry posted by 7 people jlin anphony skembel cellison Green Lab jlgreen iSEEM
	Phylogenetic Approaches for Describing and Comparing the Diversity of Microbial Communities [My Copy] Appl. Environ. Microbiol., Vol. 68, No. 8. (1 August 2002), pp. 3673-3682. by Andrew P. Martin posted by 11 people hwright sharpton skembel sriesenfeld jmeppley Microbial-Ecology Thaverkamp mcox Olaf_Ilzins djkt iSEEM
	Assessment of phylogenomic and orthology approaches for phylogenetic inference [My Copy] Bioinformatics, Vol. 23, No. 7. (1 April 2007), pp. 815-824. by B. E. Dutilh, V. van Noort, R. T. J. M. van der Heijden, T. Boekhout, B. Snel, M. A. Huynen posted by 5 people calderonv iSEEM skembel maximilianh svdate
	Assembling the Marine Metagenome, One Cell at a Time [My Copy] PLoS ONE, Vol. 4, No. 4. (23 April 2009), e5299. by Tanja Woyke, Gary Xie, Alex Copeland, et al.José M. González, Cliff Han, Hajnalka Kiss, Jimmy H. Saw, Pavel Senin, Chi Yang, Sourav Chatterji, Jan-Fang Cheng, Jonathan A. Eisen, Michael E. Sieracki, Ramunas Stepanauskas posted by 14 people inquil dakelley hwright jonilaserson iSEEM jlgreen chocolate2009 jmeppley Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot Thaverkamp neils skoch3
	Fixation and fate of C and N in the cyanobacterium Trichodesmium using nanometer-scale secondary ion mass spectrometry [My Copy] Proceedings of the National Academy of Sciences (30 March 2009) by Juliette A. Finzi-Hart, Jennifer Pett-Ridge, Peter K. Weber, et al.Radu Popa, Stewart J. Fallon, Troy Gunderson, Ian D. Hutcheon, Kenneth H. Nealson, Douglas G. Capone posted by 3 people Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot
	Horizontal gene transfer of the algal nuclear gene psbO to the photosynthetic sea slug Elysia chlorotica [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 46. (18 November 2008), pp. 17867-17871. by Mary E. Rumpho, Jared M. Worful, Jungho Lee, et al.Krishna Kannan, Mary S. Tyler, Debashish Bhattacharya, Ahmed Moustafa, James R. Manhart posted by 12 people kmachemer wiedenhoeft ltitodem neils operon smit2jam mlog Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot cmzmasek ahmedmoustafa
	Evidence for marine microfossils from amber [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 45. (11 November 2008), pp. 17426-17429. by Vincent Girard, Alexander R. Schmidt, Saint, et al.Steffi Struwe, Vincent Perrichot, Saint, Danièle Grosheny, Gérard Breton, Didier Néraudeau posted by 3 people Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot
	The Molecular Diversity of Freshwater Picoeukaryotes Reveals High Occurrence of Putative Parasitoids in the Plankton [My Copy] PLoS ONE, Vol. 3, No. 6. (11 June 2008), e2324. by Emilie Lefèvre, Balbine Roussel, Christian Amblard, Télesphore Sime-Ngando posted by 4 people Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot jdelcampo
	A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes [My Copy] Systematic and Applied Microbiology, Vol. In Press, Corrected Proof by Jörg Peplies, Renzo Kottmann, Wolfgang Ludwig, Frank O. Glöckner posted by 3 people Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot
	An original adaptation of photosynthesis in the marine green alga Ostreococcus [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 22. (3 June 2008), pp. 7881-7886. by Pierre Cardol, Benjamin Bailleul, Fabrice Rappaport, et al.Evelyne Derelle, Daniel Béal, Cécile Breyton, Shaun Bailey, Francis A. Wollman, Arthur Grossman, Hervé Moreau, Giovanni Finazzi posted by 3 people Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot
	Feasibility of assessing the community composition of prasinophytes at the helgoland roads sampling site with a DNA microarray. [My Copy] Applied and environmental microbiology, Vol. 74, No. 17. (September 2008), pp. 5305-5316. by C. Gescher, K. Metfies, S. Frickenhaus, B. Knefelkamp, K. H. Wiltshire, L. K. Medlin posted by 3 people Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot
	Bosque: Integrated phylogenetic analysis software. [My Copy] Bioinformatics (Oxford, England) (1 September 2008) by Salvador Ramírez-Flandes, Osvaldo Ulloa posted by 8 people operon cgaugain treangen druvus Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot nuin
	Occurrence and function of the orange carotenoid protein in photoprotective mechanisms in various cyanobacteria. [My Copy] Biochimica et biophysica acta (25 July 2008) by Clémence Boulay, Leyla Abasova, Christophe Six, Imre Vass, Diana Kirilovsky posted by 2 people Papers recommended by the Roscoff Plankton Group vaulot
	High bacterivory by the smallest phytoplankton in the North Atlantic Ocean [My Copy] Nature (10 August 2008) by Mikhail V. Zubkov, Glen A. Tarran posted by 7 people paulm jdelcampo hwright Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot iSEEM
	CULTURE OF THE HETEROTROPHIC DINOFLAGELLATE PROTOPERIDINIUM CRASSIPES (DINOPHYCEAE) WITH NONCELLULAR FOOD ITEMS [My Copy] Journal of Phycology, Vol. 44, No. 4. (August 2008), pp. 1090-1092. by Yamaguchi, Aika, Horiguchi, Takeo posted by 2 people Papers recommended by the Roscoff Plankton Group vaulot
	Eukaryotic diversity in an anaerobic aquifer polluted with landfill leachate. [My Copy] Applied and environmental microbiology, Vol. 74, No. 13. (July 2008), pp. 3959-3968. by T. Brad, M. Braster, B. M. van Breukelen, N. M. van Straalen, W. F. Röling posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Abundance and diversity of microbial life in ocean crust [My Copy] Nature, Vol. 453, No. 7195., pp. 653-656. by Cara M. Santelli, Beth N. Orcutt, Erin Banning, et al.Wolfgang Bach, Craig L. Moyer, Mitchell L. Sogin, Hubert Staudigel, Katrina J. Edwards posted by 6 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group jlgreen iSEEM Green Lab
	Improved Methodology for Identification of Protists and Microalgae from Plankton Samples Preserved in Lugol's Iodine Solution: Combining Microscopic Analysis with Single-Cell PCR [My Copy] Appl. Environ. Microbiol., Vol. 74, No. 8. (15 April 2008), pp. 2505-2510. by Barbara M. Auinger, Karin Pfandl, Jens Boenigk posted by 4 people jdelcampo vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Fluorescence in situ hybridization-flow cytometry-cell sorting-based method for separation and enrichment of type I and type II methanotroph populations. [My Copy] Applied and environmental microbiology, Vol. 72, No. 6. (June 2006), pp. 4293-4301. by M. G. Kalyuzhnaya, R. Zabinsky, S. Bowerman, D. R. Baker, M. E. Lidstrom, L. Chistoserdova posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Feasibility of transferring fluorescent in situ hybridization probes to an 18S rRNA gene phylochip and mapping of signal intensities. [My Copy] Applied and environmental microbiology, Vol. 74, No. 9. (May 2008), pp. 2814-2821. by K. Metfies, L. K. Medlin posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Microbial diversity and the genetic nature of microbial species [My Copy] Nat Rev Micro, Vol. 6, No. 6. (June 2008), pp. 431-440. by Mark Achtman, Michael Wagner posted by 10 people katholt microrita druvus skato_toyaku iSEEM jlgreen Green Lab vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Marine Polyphosphate: A Key Player in Geologic Phosphorus Sequestration [My Copy] Science, Vol. 320, No. 5876. (2 May 2008), pp. 652-655. by Julia Diaz, Ellery Ingall, Claudia Benitez-Nelson, et al.David Paterson, Martin D. de Jonge, Ian Mcnulty, Jay A. Brandes posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Application of Combined Morphological-Molecular Approaches to the Identification of Planktonic Protists from Environmental Samples [My Copy] The Journal of Eukaryotic Microbiology, Vol. 0, No. ja. (0) by Joel R. Duff, B. A. L. L. Hope, Peter J. Lavrentyev posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 19. (13 May 2008), pp. 7052-7057. by Annelie Pernthaler, Anne E. Dekas, C. Titus Brown, Shana K. Goffredi, Tsegereda Embaye, Victoria J. Orphan posted by 5 people Thaverkamp skato_toyaku vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Development of a PNA probe for the detection of the toxic dinoflagellate Takayama pulchella [My Copy] Harmful Algae, Vol. 7, No. 4. (June 2008), pp. 495-503. by Bangqin Huang, Jianjun Hou, Senjie Lin, Jixin Chen, Huasheng Hong posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	The ALEX CHIP--Development of a DNA chip for identification and monitoring of Alexandrium [My Copy] Harmful Algae, Vol. 7, No. 4. (June 2008), pp. 485-494. by Christine Gescher, Katja Metfies, Linda K. Medlin posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Molecular probe sets for the detection of toxic algae for use in sandwich hybridization formats [My Copy] J. Plankton Res., Vol. 30, No. 4. (1 April 2008), pp. 439-448. by Sonja Diercks, Katja Metfies, Linda K. Medlin posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	From the Cover: Extreme polyploidy in a large bacterium [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 18. (6 May 2008), pp. 6730-6734. by Jennifer E. Mendell, Kendall D. Clements, Howard J. Choat, Esther R. Angert posted by 8 people echinotrix alexisfjdufresne vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group dbikard Centre de Recherches Interdisciplinaires neils
	Exploring Ocean Biogeochemistry by Single-Cell Microprobe Analysis of Protist Elemental Composition [My Copy] Journal of Eukaryotic Microbiology, Vol. 55, No. 3. (June 2008), pp. 151-162. by Benjamin S. Twining, Stephen B. Baines, Stefan Vogt, E. de Jong, D. Martin posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	PCR Amplification of Microsatellites from Single Cells of Karenia brevis Preserved in Lugols Iodine Solution [My Copy] Marine Biotechnology, Vol. 10, No. 2. (March 2008), pp. 122-127. by Henrichs, D., Renshaw, et al. M., Santamaria, C., Richardson, B., Gold, J., Campbell, L. posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	A Cryptic Algal Group Unveiled: A Plastid Biosynthesis Pathway in the Oyster Parasite Perkinsus marinus. [My Copy] Molecular biology and evolution (20 March 2008) by Motomichi Matsuzaki, Haruko Kuroiwa, Tsuneyoshi Kuroiwa, Kiyoshi Kita, Hisayoshi Nozaki posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Composition of freshwater small eukaryotes community: unexpected importance of potential parasites. [My Copy] Applied and environmental microbiology (21 March 2008) by Cécile Lepère, Isabelle Domaizon, Didier Debroas posted by 4 people jdelcampo Microbial-Ecology Papers recommended by the Roscoff Plankton Group vaulot
	Alveolins, a New Family of Cortical Proteins that Define the Protist Infrakingdom Alveolata. [My Copy] Molecular biology and evolution (21 March 2008) by Sven B B. Gould, Wai-Hong H. Tham, Alan F F. Cowman, Geoffrey I I. McFadden, Ross F F. Waller posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Chromatophore genome sequence of Paulinella sheds light on acquisition of photosynthesis by eukaryotes. [My Copy] Current biology : CB, Vol. 18, No. 6. (25 March 2008), pp. 410-418. by E. C. Nowack, M. Melkonian, G. Glöckner posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Efficient phage-mediated pigment biosynthesis in oceanic cyanobacteria. [My Copy] Current biology : CB, Vol. 18, No. 6. (25 March 2008), pp. 442-448. by T. Dammeyer, S. C. Bagby, M. B. Sullivan, S. W. Chisholm, N. Frankenberg-Dinkel posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Widespread distribution of a unique marine protistan lineage. [My Copy] Environmental microbiology (12 March 2008) by Marie L L. Cuvelier, Alejandra Ortiz, Eunsoo Kim, et al.Heike Moehlig, David E E. Richardson, John F F. Heidelberg, John M M. Archibald, Alexandra Z Z. Worden posted by 4 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group jdelcampo
	Plastid-Derived Genes in the Non-Photosynthetic Alveolate Oxyrrhis marina. [My Copy] Molecular biology and evolution (2 April 2008) by Claudio H H. Slamovits, Patrick J J. Keeling posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Morphological Variation of Gephyrocapsa oceanica Kamptner 1943 in Plankton Samples: Implications for Ecologic and Taxonomic Interpretations. [My Copy] Protist (9 April 2008) by Jörg Bollmann, Christine Klaas posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 14. (8 April 2008), pp. 5555-5560. by Yuichi Hongoh, Vineet K. Sharma, Tulika Prakash, et al.Satoko Noda, Todd D. Taylor, Toshiaki Kudo, Yoshiyuki Sakaki, Atsushi Toyoda, Masahira Hattori, Moriya Ohkuma posted by 6 people sficklin vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group Pascalichouchou skato_toyaku
	Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 6. (12 February 2008), pp. 2005-2010. by Wesley D. Swingley, Min Chen, Patricia C. Cheung, et al.Amber L. Conrad, Liza C. Dejesa, Jicheng Hao, Barbara M. Honchak, Lauren E. Karbach, Ahmet Kurdoglu, Surobhi Lahiri, Stephen D. Mastrian, Hideaki Miyashita, Lawrence Page, Pushpa Ramakrishna, Soichirou Satoh, Matthew W. Sattley, Yuichiro Shimada, Heather L. Taylor, Tatsuya Tomo, Tohru Tsuchiya, Zi T. Wang, Jason Raymond, Mamoru Mimuro, Robert E. Blankenship, Jeffrey W. Touchman posted by 5 people jwm alexisfjdufresne vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Wide genetic diversity of picoplanktonic green algae (Chloroplastida) in the Mediterranean Sea uncovered by a phylum-biased PCR approach [My Copy] Environmental Microbiology, Vol. 0, No. 0. (0), pp. ???-???. by Manon Viprey, Laure Guillou, Martial Ferreol, Daniel Vaulot posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	The emergence of automated high-frequency flow cytometry: revealing temporal and spatial phytoplankton variability [My Copy] J. Plankton Res., Vol. 30, No. 3. (1 March 2008), pp. 333-343. by Melilotus Thyssen, Glen A. Tarran, Mikhail V. Zubkov, et al.Ross J. Holland, Gerald Gregori, Peter H. Burkill, Michel Denis posted by 4 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group vrich
	Targeted Access to the Genomes of Low-Abundance Organisms in Complex Microbial Communities [My Copy] Appl. Environ. Microbiol., Vol. 73, No. 10. (15 May 2007), pp. 3205-3214. by Mircea Podar, Carl B. Abulencia, Marion Walcher, et al.Don Hutchison, Karsten Zengler, Joseph A. Garcia, Trevin Holland, David Cotton, Loren Hauser, Martin Keller posted by 6 people microrita Olaf_Ilzins Microbial-Ecology Papers recommended by the Roscoff Plankton Group vaulot vrich
	The small genome of an abundant coastal ocean methylotroph. [My Copy] Environmental microbiology (3 April 2008) by Stephen J J. Giovannoni, Darin H H. Hayakawa, H James J. Tripp, et al.Ulrich Stingl, Scott A A. Givan, Jang-Cheon C. Cho, Hyun-Myung M. Oh, Joshua B B. Kitner, Kevin L L. Vergin, Michael S S. Rappé posted by 5 people operon vrich vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific. [My Copy] Environmental microbiology (18 February 2008) by Heike Stevens, Osvaldo Ulloa posted by 6 people anammox microbiology_nijmegen mjetten vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	SAR11 marine bacteria require exogenous reduced sulphur for growth [My Copy] Nature (12 March 2008) by James H. Tripp, Joshua B. Kitner, Michael S. Schwalbach, John W. H. Dacey, Larry J. Wilhelm, Stephen J. Giovannoni posted by 9 people sanxiyn Microbial-Ecology Thaverkamp mblwhoi vaulot Papers recommended by the Roscoff Plankton Group jlgreen Green Lab iSEEM
	A Hierarchical View of Convergent Evolution in Microbial Eukaryotes [My Copy] Journal of Eukaryotic Microbiology, Vol. 55, No. 2. (April 2008), pp. 59-68. by Brian S. Leander posted by 4 people jdelcampo vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Whole-genome analysis reveals molecular innovations and evolutionary transitions in chromalveolate species. [My Copy] Proc Natl Acad Sci U S A (25 February 2008) by Cindy Martens, Klaas Vandepoele, Yves Van de Peer posted by 6 people druvus aconesa vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group cmzmasek
	Genome evolution in cyanobacteria: The stable core and the variable shell [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 7. (19 February 2008), pp. 2510-2515. by Tuo Shi, Paul G. Falkowski posted by 9 people Scis0000002 mhiromi Thaverkamp operon bluto vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group tuoshi
	Genetic Diversity of Parasitic Dinoflagellates in the Genus Amoebophrya and Its Relationship to Parasite Biology and Biogeography [My Copy] Journal of Eukaryotic Microbiology, Vol. 55, No. 1. (February 2008), pp. 1-8. by Sunju Kim, Myung G. I. L. Park, Keun-Yong Kim, et al.Chang-Hoon Kim, Wonho Yih, Jong S. O. O. Park, Wayne D. Coats posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Proposal of Pseudochattonella verruculosa gen. nov., comb. nov. (Dictyochophyceae) for a formar raphidophycean alga Chattonella verruculosa, based on 18S rDNA phylogeny and ultrastructural characteristics [My Copy] Phycological Research, Vol. 55, No. 3. (September 2007), pp. 185-192. by Hosoi-Tanabe, Shoko, Honda, et al. Daiske, Fukaya, Sachiko, Otake, Isamu, Inagaki, Yuji, Sako, Yoshihiko posted by 3 people vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Mechanism of chimera formation during the Multiple Displacement Amplification reaction [My Copy] BMC Biotechnology, Vol. 7 (12 April 2007), 19. by Roger S. Lasken, Timothy B. Stockwell posted by 4 people Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot skato_toyaku