Mehlhorn's Top Recommendations

These recommendations were last updated about 3 hours ago.

	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nat Biotech, Vol. 23, No. 1. (06 January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, W. James Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted by 46 people frohike mpizbioinfo megraw Dulce farhat wowalz mhofree jasontsai heliopais pengchy daforerog yylin cambray emptyhb bryankr icases ana barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT dandaman vietanh0 ep161302 nuin Stew
	Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster [My Copy] PLoS Comput Biol, Vol. 3, No. 1. (19 January 2007), e7. by Thomas A. Down, Casey M. Bergman, Jing Su, Tim J. P. Hubbard posted by 14 people bsamal daveGerrard ychromosome timhubbard lusk wowalz indigoviolet dpollard dquest SeungjoonOh nklee EisenLab emptyhb isimpson
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted by 87 people claire_jubin danbolser PolymeraseI VGreiff richter80 krapnik azazello rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin C. elegans / WormBase tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology Thaverkamp shung marti ashaytan benwei granujilla
	Statistical significance of cis-regulatory modules [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Dustin Schones, Andrew Smith, Michael Zhang posted by 12 people druvus indigoviolet dpollard dquest sebastien_vigneau shigepong SeungjoonOh GustavoLacerda nklee EisenLab xili03 sconlan
	Transcriptional regulatory code of a eukaryotic genome [My Copy] Nature, Vol. 431, No. 7004. (02 September 2004), pp. 99-104. by Christopher T. Harbison, D. Benjamin Gordon, Tong I. Lee, et al.Nicola J. Rinaldi, Kenzie D. Macisaac, Timothy W. Danford, Nancy M. Hannett, Jean-Bosco Tagne, David B. Reynolds, Jane Yoo, Ezra G. Jennings, Julia Zeitlinger, Dmitry K. Pokholok, Manolis Kellis, P. Alex Rolfe, Ken T. Takusagawa, Eric S. Lander, David K. Gifford, Ernest Fraenkel, Richard A. Young posted by 39 people arthegall viren4388 daveGerrard Dulce talponer wowalz siebert alokm tuck lyongu kaspermunch dpollard balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim koller lusk nklee Bioinformatics EisenLab FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling cisevol BergmanLab njcitulike xili03 brant mariakmejia kristallreiner snow_dragon aalibes
	A survey of DNA motif finding algorithms. [My Copy] BMC bioinformatics, Vol. 8 Suppl 7, No. Suppl 7. (2007) by Modan K. Das, Ho-Kwok K. Dai posted by 21 people bsamal Dulce lusk wowalz svenrahmann isimpson BergmanLab daveGerrard coldmeadow druvus Bioinformatics - CRUK Stew emptyhb dquest nklee maximilianh yevishere csdhwang brant xili03 pradiptaray
	Prediction of complete gene structures in human genomic DNA [My Copy] Journal of Molecular Biology, Vol. 268, No. 1. (25 April 1997), pp. 78-94. by C. Burge posted by 16 people viren4388 rshe jmartin49 Ayest pcahan1 indigoviolet kaspermunch dullhunk dquest wenhan GustavoLacerda nicholso Bioinformatics EisenLab nklee bandrewfox
	Identifying DNA and protein patterns with statistically significant alignments of multiple sequences [My Copy] Bioinformatics, Vol. 15, No. 7. (1 July 1999), pp. 563-577. by G. Z. Hertz, G. D. Stormo posted by 10 people megraw tonamswish wowalz yylin tuck indigoviolet dquest lusk EisenLab chad_davis
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted by 75 people saunders rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser jbhiatt yylin mgomes BioNica idoerg pjcite swp09 kgutwin mcbla cpwardell References for 3DSim paper johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 EisenLab biomedical-nlp Microbial-Ecology Plantandetc mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM
	PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny. [My Copy] PLoS computational biology, Vol. 1, No. 7. (December 2005) by Rahul Siddharthan, Eric D. Siggia, Erik van Nimwegen posted by 21 people farhat wowalz aprasad cajunsushi treangen druvus ana postrational dquest AaronDarling nickluscombe noano adsmitty lusk lilou structural_bioinformatics Bioinformatics EBI-regulation idonaldson yevishere isimpson
	Assessing performance of orthology detection strategies applied to eukaryotic genomes. [My Copy] PloS one, Vol. 2, No. 4. (2007) by Feng Chen, Aaron J. Mackey, Jeroen K. Vermunt, David S. Roos posted by 20 people rolandkrause dfdong richardbickerton treangen dquest cgaugain druvus icases operon rvosa indigoviolet stajich cjeans winterschlaefer EisenLab FAB-lab TNT bpcusack cerca natstreet
	An algorithm for finding signals of unknown length in DNA sequences [My Copy] Bioinformatics, Vol. 17, No. suppl_1. (1 June 2001), pp. S207-214. by Giulio Pavesi, Giancarlo Mauri, Graziano Pesole posted by 7 people wowalz dquest xiaobeizhao smiddha nklee xili03 ep161302
	Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_2. (1 July 2004), pp. W199-203. by Giulio Pavesi, Paolo Mereghetti, Giancarlo Mauri, Graziano Pesole posted by 9 people farhat Dulce wowalz coldmeadow djkt dquest xiaobeizhao dandaman bryankr
	Discovery of novel transcription factor binding sites by statistical overrepresentation. [My Copy] Nucleic Acids Res, Vol. 30, No. 24. (15 December 2002), pp. 5549-5560. by S. Sinha, M. Tompa posted by 12 people wowalz GustavoLacerda kaarsinogen dquest xiaobeizhao smiddha GeeSharpMinor xi03 xili03 ep161302 wenhan pradiptaray
	LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA. [My Copy] Genome Res, Vol. 13, No. 4. (April 2003), pp. 721-731. by M. Brudno, C. B. Do, G. M. Cooper, et al.M. F. Kim, E. Davydov, E. D. Green, A. Sidow, S. Batzoglou, posted by 16 people treangen operon balajis dpollard xwbcn dquest adepace hdopazo lusk Garamonfok adijr natstreet nklee EisenLab Neeperando kcrawlik
	Discovery of Regulatory Elements by a Computational Method for Phylogenetic Footprinting [My Copy] Genome Res., Vol. 12, No. 5. (1 May 2002), pp. 739-748. by Mathieu Blanchette, Martin Tompa posted by 10 people wowalz coldmeadow chad_davis balajis lyongu dpollard dquest EisenLab cis-regulatory-evolution csdhwang
	Assessment of composite motif discovery methods. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by K. Klepper, G. K. Sandve, O. Abul, J. Johansen, F. Drablos posted by 11 people bsamal wowalz chad_davis nklee maximilianh idonaldson xili03 Motif Discovery csdhwang isimpson yoonk
	BLAT--the BLAST-like alignment tool. [My Copy] Genome research, Vol. 12, No. 4. (1 April 2002), pp. 656-664. by W. James Kent posted by 41 people azazello rshe dchughes rdowell LabDros gwallau druvus aprasad maria_hauser n00c sficklin Thaverkamp cpwardell BergmanLab daveGerrard coela daforerog pwais umit mmartin paszkows operon miguel pcahan1 Ayest indigoviolet mtagaya treangen michC djkt timflutre olympos cjeans wenhan natstreet antonkratz EisenLab yoanjacquemin talponer bozdagd gpappas
	Applied bioinformatics for the identification of regulatory elements. [My Copy] Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 276-287. by W. W. Wasserman, A. Sandelin posted by 28 people bsamal wowalz yas icases ana chad_davis moborg gpalidwor dchughes nickluscombe johncumbers giovanni xiaobeizhao bertelsen Stew nklee structural_bioinformatics Bioinformatics EisenLab G4ID EBI-regulation GeschwindLab TNT Genetics-of-Gambling jdiezperezj ArtemPankin mariakmejia isimpson
	MEME: discovering and analyzing DNA and protein sequence motifs. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006), pp. W369-373. by Timothy L. Bailey, Nadya Williams, Chris Misleh, Wilfred W. Li posted by 9 people stharward wowalz coldmeadow yevishere pansapiens nklee bryankr dquest isimpson
	Analysis of computational approaches for motif discovery [My Copy] Algorithms for Molecular Biology, Vol. 1, No. 1. (19 May 2006), 8. by Nan Li, Martin Tompa posted by 15 people bsamal wowalz yevishere ana barry tuck chad_davis dquest lusk nklee structural_bioinformatics Bioinformatics maximilianh xi03 csdhwang
	Evolution of genes and genomes on the Drosophila phylogeny. [My Copy] Nature, Vol. 450, No. 7167. (8 November 2007), pp. 203-218. by Drosophila 12 Genomes Consortium, Andrew G. Clark, Michael B. Eisen, et al.Douglas R. Smith, Casey M. Bergman, Brian Oliver, Therese A. Markow, Thomas C. Kaufman, Manolis Kellis, William Gelbart, Venky N. Iyer, Daniel A. Pollard, Timothy B. Sackton, Amanda M. Larracuente, Nadia D. Singh, Jose P. Abad, Dawn N. Abt, Boris Adryan, Montserrat Aguade, Hiroshi Akashi, Wyatt W. Anderson, Charles F. Aquadro, David H. Ardell, Roman Arguello, Carlo G. Artieri, Daniel A. Barbash, Daniel Barker, Paolo Barsanti, Phil Batterham, Serafim Batzoglou, Dave Begun, Arjun Bhutkar, Enrico Blanco, Stephanie A. Bosak, Robert K. Bradley, Adrianne D. Brand, Michael R. Brent, Angela N. Brooks, Randall H. Brown, Roger K. Butlin, Corrado Caggese, Brian R. Calvi, A. Bernardo de Carvalho, Anat Caspi, Sergio Castrezana, Susan E. Celniker, Jean L. Chang, Charles Chapple, Sourav Chatterji, Asif Chinwalla, Alberto Civetta, Sandra W. Clifton, Josep M. Comeron, James C. Costello, Jerry A. Coyne, Jennifer Daub, Robert G. David, Arthur L. Delcher, Kim Delehaunty, Chuong B. Do, Heather Ebling, Kevin Edwards, Thomas Eickbush, Jay D. Evans, Alan Filipski, Sven Findeiss, Eva Freyhult, Lucinda Fulton, Robert Fulton, Ana C. Garcia, Anastasia Gardiner, David A. Garfield, Barry E. Garvin, Greg Gibson, Don Gilbert, Sante Gnerre, Jennifer Godfrey, Robert Good, Valer Gotea, Brenton Gravely, Anthony J. Greenberg, Sam Griffiths-Jones, Samuel Gross, Roderic Guigo, Erik A. Gustafson, Wilfried Haerty, Matthew W. Hahn, Daniel L. Halligan, Aaron L. Halpern, Gillian M. Halter, Mira V. Han, Andreas Heger, LaDeana Hillier, Angie S. Hinrichs, Ian Holmes, Roger A. Hoskins, Melissa J. Hubisz, Dan Hultmark, Melanie A. Huntley, David B. Jaffe, Santosh Jagadeeshan, William R. Jeck, Justin Johnson, Corbin D. Jones, William C. Jordan, Gary H. Karpen, Eiko Kataoka, Peter D. Keightley, Pouya Kheradpour, Ewen F. Kirkness, Leonardo B. Koerich, Karsten Kristiansen, Dave Kudrna, Rob J. Kulathinal, Sudhir Kumar, Roberta Kwok, Eric Lander, Charles H. Langley, Richard Lapoint, Brian P. Lazzaro, So-Jeong J. Lee, Lisa Levesque, Ruiqiang Li, Chiao-Feng F. Lin, Michael F. Lin, Kerstin Lindblad-Toh, Ana Llopart, Manyuan Long, Lloyd Low, Elena Lozovsky, Jian Lu, Meizhong Luo, Carlos A. Machado, Wojciech Makalowski, Mar Marzo, Muneo Matsuda, Luciano Matzkin, Bryant McAllister, Carolyn S. McBride, Brendan McKernan, Kevin McKernan, Maria Mendez-Lago, Patrick Minx, Michael U. Mollenhauer, Kristi Montooth, Stephen M. Mount, Xu Mu, Eugene Myers, Barbara Negre, Stuart Newfeld, Rasmus Nielsen, Mohamed A. Noor, Patrick O'Grady, Lior Pachter, Montserrat Papaceit, Matthew J. Parisi, Michael Parisi, Leopold Parts, Jakob S. Pedersen, Graziano Pesole, Adam M. Phillippy, Chris P. Ponting, Mihai Pop, Damiano Porcelli, Jeffrey R. Powell, Sonja Prohaska, Kim Pruitt, Marta Puig, Hadi Quesneville, Kristipati Ravi R. Ram, David Rand, Matthew D. Rasmussen, Laura K. Reed, Robert Reenan, Amy Reily, Karin A. Remington, Tania T. Rieger, Michael G. Ritchie, Charles Robin, Yu-Hui H. Rogers, Claudia Rohde, Julio Rozas, Marc J. Rubenfield, Alfredo Ruiz, Susan Russo, Steven L. Salzberg, Alejandro Sanchez-Gracia, David J. Saranga, Hajime Sato, Stephen W. Schaeffer, Michael C. Schatz, Todd Schlenke, Russell Schwartz, Carmen Segarra, Rama S. Singh, Laura Sirot, Marina Sirota, Nicholas B. Sisneros, Chris D. Smith, Temple F. Smith, John Spieth, Deborah E. Stage, Alexander Stark, Wolfgang Stephan, Robert L. Strausberg, Sebastian Strempel, David Sturgill, Granger Sutton, Granger G. Sutton, Wei Tao, Sarah Teichmann, Yoshiko N. Tobari, Yoshihiko Tomimura, Jason M. Tsolas, Vera L. Valente, Eli Venter, J. Craig Venter, Saverio Vicario, Filipe G. Vieira, Albert J. Vilella, Alfredo Villasante, Brian Walenz, Jun Wang, Marvin Wasserman, Thomas Watts, Derek Wilson, Richard K. Wilson, Rod A. Wing, Mariana F. Wolfner, Alex Wong, Gane Ka-Shu K. Wong, Chung-I I. Wu, Gabriel Wu, Daisuke Yamamoto, Hsiao-Pei P. Yang, Shiaw-Pyng P. Yang, James A. Yorke, Kiyohito Yoshida, Evgeny Zdobnov, Peili Zhang, Yu Zhang, Aleksey V. Zimin, Jennifer Baldwin, Amr Abdouelleil, Jamal Abdulkadir, Adal Abebe, Brikti Abera, Justin Abreu, St Christophe C. Acer, Lynne Aftuck, Allen Alexander, Peter An, Erica Anderson, Scott Anderson, Harindra Arachi, Marc Azer, Pasang Bachantsang, Andrew Barry, Tashi Bayul, Aaron Berlin, Daniel Bessette, Toby Bloom, Jason Blye, Leonid Boguslavskiy, Claude Bonnet, Boris Boukhgalter, Imane Bourzgui, Adam Brown, Patrick Cahill, Sheridon Channer, Yama Cheshatsang, Lisa Chuda, Mieke Citroen, Alville Collymore, Patrick Cooke, Maura Costello, Katie D'Aco, Riza Daza, Georgius De Haan, Stuart DeGray, Christina DeMaso, Norbu Dhargay, Kimberly Dooley, Erin Dooley, Missole Doricent, Passang Dorje, Kunsang Dorjee, Alan Dupes, Richard Elong, Jill Falk, Abderrahim Farina, Susan Faro, Diallo Ferguson, Sheila Fisher, Chelsea D. Foley, Alicia Franke, Dennis Friedrich, Loryn Gadbois, Gary Gearin, Christina R. Gearin, Georgia Giannoukos, Tina Goode, Joseph Graham, Edward Grandbois, Sharleen Grewal, Kunsang Gyaltsen, Nabil Hafez, Birhane Hagos, Jennifer Hall, Charlotte Henson, Andrew Hollinger, Tracey Honan, Monika D. Huard, Leanne Hughes, Brian Hurhula, M. Erii Husby, Asha Kamat, Ben Kanga, Seva Kashin, Dmitry Khazanovich, Peter Kisner, Krista Lance, Marcia Lara, William Lee, Niall Lennon, Frances Letendre, Rosie LeVine, Alex Lipovsky, Xiaohong Liu, Jinlei Liu, Shangtao Liu, Tashi Lokyitsang, Yeshi Lokyitsang, Rakela Lubonja, Annie Lui, Pen MacDonald, Vasilia Magnisalis, Kebede Maru, Charles Matthews, William McCusker, Susan McDonough, Teena Mehta, James Meldrim, Louis Meneus, Oana Mihai, Atanas Mihalev, Tanya Mihova, Rachel Mittelman, Valentine Mlenga, Anna Montmayeur, Leonidas Mulrain, Adam Navidi, Jerome Naylor, Tamrat Negash, Thu Nguyen, Nga Nguyen, Robert Nicol, Choe Norbu, Nyima Norbu, Nathaniel Novod, Barry O'Neill, Sahal Osman, Eva Markiewicz, Otero L. Oyono, Christopher Patti, Pema Phunkhang, Fritz Pierre, Margaret Priest, Sujaa Raghuraman, Filip Rege, Rebecca Reyes, Cecil Rise, Peter Rogov, Keenan Ross, Elizabeth Ryan, Sampath Settipalli, Terry Shea, Ngawang Sherpa, Lu Shi, Diana Shih, Todd Sparrow, Jessica Spaulding, John Stalker, Nicole Stange-Thomann, Sharon Stavropoulos, Catherine Stone, Christopher Strader, Senait Tesfaye, Talene Thomson, Yama Thoulutsang, Dawa Thoulutsang, Kerri Topham, Ira Topping, Tsamla Tsamla, Helen Vassiliev, Andy Vo, Tsering Wangchuk, Tsering Wangdi, Michael Weiand, Jane Wilkinson, Adam Wilson, Shailendra Yadav, Geneva Young, Qing Yu, Lisa Zembek, Danni Zhong, Andrew Zimmer, Zac Zwirko, David B. Jaffe, Pablo Alvarez, Will Brockman, Jonathan Butler, CheeWhye Chin, Sante Gnerre, Manfred Grabherr, Michael Kleber, Evan Mauceli, Iain MacCallum posted by 43 people aaltenburger biomcgary nuttpo daveGerrard Anachff GustavoLacerda mqbphcw3 rpetrenko gwallau chica jlncdr aprasad gjuggler lizbiogen jbsaltz druvus pradiptaray pengchy operon tmmurali indigoviolet djkt timflutre stajich zwang Garamonfok lp2 Bioinformatics EisenLab CharlesM hpaces caseybrown emptyhb urgi Mycology noor PetrovLab isimpson balicea cisevol BergmanLab Drosophila-Genetics-Genomics-2008 hdopazo
	MotifCut: regulatory motifs finding with maximum density subgraphs [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e150-157. by Eugene Fratkin, Brian T. Naughton, Douglas L. Brutlag, Serafim Batzoglou posted by 5 people pradiptaray wowalz indigoviolet EisenLab yevishere
	Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes [My Copy] PLoS Comput Biol, Vol. 3, No. 9. (7 September 2007), e175. by Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin posted by 15 people Jporci druvus treangen carlk operon dpollard dquest djkt zwang cabbagezs EisenLab heliopais blobbybirdman cis-regulatory-evolution Myxo group
	In silico representation and discovery of transcription factor binding sites [My Copy] Brief Bioinform, Vol. 5, No. 3. (1 January 2004), pp. 217-236. by Giulio Pavesi, Giancarlo Mauri, Graziano Pesole posted by 4 people wowalz dquest xili03 gdb
	Discriminative motif discovery in DNA and protein sequences using the DEME algorithm. [My Copy] BMC bioinformatics, Vol. 8, No. 1. (2007) by E. Redhead, T. L. Bailey posted by 9 people wowalz tmarscha dpollard cjeans nklee niallhaslam EisenLab maximilianh idonaldson
	Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies1 [My Copy] Journal of Molecular Biology, Vol. 281, No. 5. (04 September 1998), pp. 827-842. by J. van Helden, B. André, J. Collado-Vides posted by 7 people Dulce wowalz druvus dquest johncumbers smiddha ale
	PhyloScan: Identification of transcription factor binding sites using cross-species evidence [My Copy] Algorithms for Molecular Biology, Vol. 2 (23 January 2007), 1. by Steven C. Carmack, Lee A. Mccue, Lee A. Newberg, Charles E. Lawrence posted by 5 people dpollard dquest lusk nklee EisenLab
	Locating mammalian transcription factor binding sites: A survey of computational and experimental techniques [My Copy] Genome Research In Genome Research, Vol. 16, No. 12. (19 December 2006), pp. 1455-1464. by Laura Elnitski, Victor X. Jin, Peggy J. Farnham, Steven J. M. Jones posted by 15 people bsamal matted gdb wowalz Bioinformatics - CRUK Stew heliopais dquest bryankr giovanni lusk SeungjoonOh cabbagezs GeschwindLab maximilianh
	Finding functional sequence elements by multiple local alignment [My Copy] Nucl. Acids Res., Vol. 32, No. 1. (2 January 2004), pp. 189-200. by Martin C. Frith, Ulla Hansen, John L. Spouge, Zhiping Weng posted by 8 people wyatt111 idonaldson wowalz treangen dquest kengg nklee Plantandetc
	Discriminative motifs. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 10, No. 3-4. (2003), pp. 599-615. by Saurabh Sinha posted by 4 people operon wowalz nklee dquest
	Systematic discovery of regulatory motifs in human promoters and 3[prime] UTRs by comparison of several mammals [My Copy] Nature, Vol. aop, No. current. (27 February 2005) by Xiaohui Xie, Jun Lu, E. J. Kulbokas, et al.Todd R. Golub, Vamsi Mootha, Kerstin Lindblad-Toh, Eric S. Lander, Manolis Kellis posted by 33 people Dulce wowalz maximilianh_otx hagechouchin443 sterovetta kieran101 snuppepuppan BioGeek briann jtextori tmmurali okarsligil jfr balajis lyongu eckart_bindewald mtagaya adepace fisherp nickluscombe panetebrother smiddha franklin oscarluoinau Bioinformatics EisenLab microRNA EBI-regulation heliopais ale emptyhb maralena mariakmejia
	Regulatory motif discovery using a population clustering evolutionary algorithm. [My Copy] IEEE/ACM Trans Comput Biol Bioinform, Vol. 4, No. 3. (p 2007), pp. 403-414. by M. A. Lones, A. M. Tyrrell posted by 7 people Dulce wowalz nklee idonaldson xili03 csdhwang isimpson
	Detecting putative orthologs. [My Copy] Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1710-1711. by D. P. Wall, H. B. Fraser, A. E. Hirsh posted by 11 people cgaugain operon ana indigoviolet dquest structural_bioinformatics Bioinformatics EisenLab ninch rvosa cerca
	Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. [My Copy] Nature biotechnology, Vol. 16, No. 10. (October 1998), pp. 939-945. by F. P. Roth, J. D. Hughes, P. W. Estep, G. M. Church posted by 6 people Dulce wowalz dquest kengg Plantandetc isimpson
	A deterministic motif finding algorithm with application to the human genome [My Copy] Bioinformatics In Bioinformatics, Vol. 22, No. 9. (1 May 2006), pp. 1047-1054. by Lawrence S. Hon, Ajay N. Jain posted by 8 people bsamal wowalz shwu idonaldson dquest nklee Motif Discovery maximilianh
	Genome-Wide Mapping of in Vivo Protein-DNA Interactions [My Copy] Science, Vol. 316, No. 5830. (8 June 2007), pp. 1497-1502. by David S. Johnson, Ali Mortazavi, Richard M. Myers, Barbara Wold posted by 30 people oannes daforerog tonamswish ewilban1 aprasad jo_davies aalibes balicea andersbj JeremyZucker aswin kengg giovanni cjeans ghattem zwang epigenetics biomcgary george_g cabbagezs Jporci Bioinformatics microRNA Marcotte_Lab blobbybirdman UH - Computational Biology caseybrown emptyhb Myxo group dquest
	The generic genome browser: a building block for a model organism system database. [My Copy] Genome research, Vol. 12, No. 10. (October 2002), pp. 1599-1610. by Lincoln D. Stein, Christopher Mungall, ShengQiang Shu, et al.Michael Caudy, Marco Mangone, Allen Day, Elizabeth Nickerson, Jason E. Stajich, Todd W. Harris, Adrian Arva, Suzanna Lewis posted by 15 people bertelsen rshe inesdesantiago Scis0000002 thegoose2 taroleo Cortel indigoviolet dquest stajich natstreet EisenLab dullhunk tharris farhat
	MTAP: The Motif Tool Assessment Platform [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 9. (2008) by Daniel Quest, Kathryn Dempsey, Mohammad Shafiullah, Dhundy Bastola, Hesham Ali posted by 6 people wowalz nklee cassj YuvalTabach Stew dquest
	A probabilistic method to detect regulatory modules. [My Copy] Bioinformatics, Vol. 19 Suppl 1 (2003) by S. Sinha, E. van Nimwegen, E. D. Siggia posted by 7 people maximilianh indigoviolet dquest lusk EisenLab cisevol cis-regulatory-evolution
	A multistep bioinformatic approach detects putative regulatory elements in gene promoters. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by S. Bortoluzzi, A. Coppe, A. Bisognin, C. Pizzi, G. A. Danieli posted by 3 people wowalz nklee dquest
	NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence. [My Copy] Nucleic acids research, Vol. 33, No. 5. (2005), pp. 1445-1453. by T. A. Down, T. J. Hubbard posted by 7 people timhubbard emptyhb lyongu dpollard dquest EisenLab waszak
	A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites. [My Copy] Nucleic Acids Res, Vol. 34, No. 20. (2006), pp. 5730-5739. by B. T. Naughton, E. Fratkin, S. Batzoglou, D. L. Brutlag posted by 6 people indigoviolet nklee EisenLab yevishere xili03 GustavoLacerda
	Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach. [My Copy] Genome Biol, Vol. 6, No. 2. (2005) by O. Elemento, S. Tavazoie posted by 6 people Dulce leelarcombe indigoviolet grahamc EisenLab nklee
	How does eukaryotic gene prediction work? [My Copy] Nature Biotechnology, Vol. 25, No. 8. (01 August 2007), pp. 883-885. by Michael R. Brent posted by 12 people Jporci guhjy indigoviolet dchughes wenhan zwang cabbagezs nklee EisenLab G4ID Genetics-of-Gambling ale
	Divergence of Transcription Factor Binding Sites Across Related Yeast Species [My Copy] Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819. by Anthony R. Borneman, Tara A. Gianoulis, Zhengdong D. Zhang, et al.Haiyuan Yu, Joel Rozowsky, Michael R. Seringhaus, Lu Y. Wang, Mark Gerstein, Michael Snyder posted by 26 people provero pradiptaray gdb fenghezi dbensasson caseybrown bryankr aalibes chad_davis dpollard djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci EisenLab maximilianh cisevol cis-regulatory-evolution njcitulike emptyhb nklee anka
	WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences [My Copy] BMC Bioinformatics, Vol. 8 (07 February 2007), 46. by Giulio Pavesi, Federico Zambelli, Graziano Pesole posted by 5 people wowalz djkt dquest GustavoLacerda nuin
	Sequence logos: a new way to display consensus sequences. [My Copy] Nucleic acids research, Vol. 18, No. 20. (25 October 1990), pp. 6097-6100. by T. D. Schneider, R. M. Stephens posted by 10 people mgomes GustavoLacerda stubrown calderonv hplatero analogAI indigoviolet EisenLab yevishere austin
	A steganalysis-based approach to comprehensive identification and characterization of functional regulatory elements [My Copy] Genome Biology, Vol. 7 (20 June 2006), R49. by Guandong Wang, Weixiong Zhang posted by 4 people indigoviolet dquest EisenLab ale
	OrthoMCL: identification of ortholog groups for eukaryotic genomes. [My Copy] Genome research, Vol. 13, No. 9. (September 2003), pp. 2178-2189. by Li Li, Christian J. Stoeckert, David S. Roos posted by 18 people GustavoLacerda biomcgary sjcockell thegoose2 nlapalu dullhunk natstreet druvus C. elegans / WormBase tharris mdimmic operon indigoviolet AaronDarling bluto EisenLab maximilianh ninch
	The Bioperl Toolkit: Perl Modules for the Life Sciences [My Copy] Genome Res., Vol. 12, No. 10. (1 October 2002), pp. 1611-1618. by Jason E. Stajich, David Block, Kris Boulez, et al.Steven E. Brenner, Stephen A. Chervitz, Chris Dagdigian, Georg Fuellen, James G. Gilbert, Ian Korf, Hilmar Lapp, Heikki Lehvaslaiho, Chad Matsalla, Chris J. Mungall, Brian I. Osborne, Matthew R. Pocock, Peter Schattner, Martin Senger, Lincoln D. Stein, Elia Stupka, Mark D. Wilkinson, Ewan Birney posted by 30 people akou ludaesch jsatkosk kiekyon Thaverkamp Cortel brdwilde daforerog GustavoLacerda krapnik jmeppley chad_davis rvosa indigoviolet skhadar dullhunk dgront stajich noby incovoma glycine tyrosine threonine valine nklee EisenLab FAB-lab hpaces sekmi ninch
	Detection of generic spaced motifs using submotif pattern mining. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 12. (15 June 2007), pp. 1476-1485. by E. Wijaya, K. Rajaraman, S. M. Yiu, W. K. Sung posted by 5 people fenghezi wowalz grahamc cjeans xili03
	Computational prediction of transcription-factor binding site locations [My Copy] Genome Biology, Vol. 5, No. 1. (2003), 201. by Martha Bulyk posted by 12 people xubeisi Baschl marti tkmaia kaarsinogen lusk Stew nklee EisenLab yevishere xili03 aalibes
	Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes. [My Copy] Nucleic Acids Res, Vol. 29, No. 3. (1 February 2001), pp. 774-782. by L. McCue, W. Thompson, C. Carmack, et al.M. P. Ryan, J. S. Liu, V. Derbyshire, C. E. Lawrence posted by 6 people azazello dquest adepace nklee EisenLab pradiptaray
	Combinatorial approaches to finding subtle signals in DNA sequences. [My Copy] Proc Int Conf Intell Syst Mol Biol, Vol. 8 (2000), pp. 269-278. by P. A. Pevzner, S. H. Sze posted by 5 people wowalz dquest lesliehong xili03 ep161302
	Finding motifs using random projections. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 9, No. 2. (2002), pp. 225-242. by J. Buhler, M. Tompa posted by 4 people wowalz cmoewes dquest xili03
	Limitations and potentials of current motif discovery algorithms [My Copy] Nucl. Acids Res., Vol. 33, No. 15. (2 September 2005), pp. 4899-4913. by Jianjun Hu, Bin Li, Daisuke Kihara posted by 8 people Dulce farhat wowalz Bioinformatics - CRUK Stew bryankr gpalidwor dquest
	Discovery of sequence motifs related to coexpression of genes using evolutionary computation. [My Copy] Nucleic Acids Res, Vol. 32, No. 13. (2004), pp. 3826-3835. by G. B. Fogel, D. G. Weekes, G. Varga, et al.E. R. Dow, H. B. Harlow, J. E. Onyia, C. Su posted by 6 people wowalz svenrahmann lptolik gpalidwor dquest xili03
	Phylogeny based discovery of regulatory elements. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by J. Gertz, J. C. Fay, B. A. Cohen posted by 7 people pradiptaray druvus indigoviolet dquest EisenLab cisevol cis-regulatory-evolution
	Bounded search for de novo identification of degenerate cis-regulatory elements. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by J. M. Carlson, A. Chakravarty, R. S. Khetani, R. H. Gross posted by 3 people indigoviolet dquest EisenLab
	CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments. [My Copy] Bioinformatics, Vol. 19 Suppl 1 (2003) by R. Sharan, I. Ovcharenko, A. Ben-Hur, R. M. Karp posted by 3 people indigoviolet dquest EisenLab
	Tissue-specific transcriptional regulation has diverged significantly between human and mouse. [My Copy] Nature genetics, Vol. 39, No. 6. (21 June 2007), pp. 730-732. by Duncan T. Odom, Robin D. Dowell, Elizabeth S. Jacobsen, et al.William Gordon, Timothy W. Danford, Kenzie D. MacIsaac, P. Alexander Rolfe, Caitlin M. Conboy, David K. Gifford, Ernest Fraenkel posted by 19 people arthegall vingron ajaymalik fenghezi dpollard gpalidwor dchughes cwbrown djkt cjeans EisenLab G4ID Genetics-of-Gambling maximilianh cis-regulatory-evolution fpattyn caseybrown yevishere gdb
	Eukaryotic Regulatory Element Conservation Analysis and Identification Using Comparative Genomics [My Copy] Genome Res., Vol. 14, No. 3. (1 March 2004), pp. 451-458. by Yueyi Liu, Shirley X. Liu, Liping Wei, Russ B. Altman, Serafim Batzoglou posted by 6 people cis-regulatory-evolution cisevol lyongu gpalidwor dquest nklee
	Cluster analysis and display of genome-wide expression patterns [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 25. (8 December 1998), pp. 14863-14868. by Michael B. Eisen, Paul T. Spellman, Patrick O. Brown, David Botstein posted by 41 people frohike ottermanns npozo antonkratz potatongy drungows colmryan jplatig rsaito Neeperando baldigroup daforerog karinlag ronglais operon Borelli pengchy macowell ggrot miguel textoris okarsligil pcahan1 lfriedl balajis nuke2005 lyongu maryee wnpx nirfriedman dquest karfunkel kdl Bioinformatics BUiGEM dps kintoki jo_davies tvdbulck bozdagd roys
	Efficient exact motif discovery [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i356-364. by Tobias Marschall, Sven Rahmann posted by 6 people bsamal wowalz dquest nuin idonaldson maximilianh
	Whole-genome sequence assembly for mammalian genomes: Arachne 2. [My Copy] Genome research In Genome Research, Vol. 13, No. 1. (1 January 2003), pp. 91-96. by David B. Jaffe, Jonathan Butler, Sante Gnerre, et al.Evan Mauceli, Kerstin Lindblad-Toh, Jill P. Mesirov, Michael C. Zody, Eric S. Lander posted by 12 people claire_jubin darian n00c jmanning2k orzenil idoerg bpb indigoviolet AaronDarling wenhan farhat EisenLab
	Using local gene expression similarities to discover regulatory binding site modules [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (17 November 2006), 505. by Bartek Wilczynski, Torgeir Hvidsten, Andriy Kryshtafovych, Jerzy Tiuryn, Jan Komorowski, Krzysztof Fidelis posted by 5 people TRHvidsten wowalz jfr dquest smiddha
	Cluster-Buster: finding dense clusters of motifs in DNA sequences [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3666-3668. by Martin C. Frith, Michael C. Li, Zhiping Weng posted by 5 people Dulce isimpson nklee indigoviolet EisenLab
	The evolution of gene regulation by transcription factors and microRNAs [My Copy] Nature Reviews Genetics, Vol. 8, No. 2. (01 February 2007), pp. 93-103. by Kevin Chen, Nikolaus Rajewsky posted by 29 people heliopais guhjy antonkratz qfwills vvoorr aprasad jfr indigoviolet tardigrade andersbj dchughes emilyhare penka cdawson aswin plofje dbikard joepickrell Garamonfok EeHawk3 jayster4 EisenLab microRNA Nie GIG dandaman maralena bootsy robertkofler
	Multiple sequence alignment: In pursuit of homologous DNA positions [My Copy] Genome Res., Vol. 17, No. 2. (1 February 2007), pp. 127-135. by Sudhir Kumar, Alan Filipski posted by 10 people Thaverkamp natstreet druvus treangen aprasad indigoviolet BioNica cjeans EisenLab mingzhi
	Modulefinder: a tool for computational discovery of cis regulatory modules. [My Copy] Pac Symp Biocomput (2005), pp. 519-530. by A. A. Philippakis, F. S. He, M. L. Bulyk posted by 4 people wowalz indigoviolet ccr EisenLab
	Profile hidden Markov models [My Copy] Bioinformatics, Vol. 14, No. 9. (1 October 1998), pp. 755-763. by S. R. Eddy posted by 15 people ldiambra farhat BioNica druvus albert_swart miguel chad_davis eweaver dgront rabio cjeans suizan nklee yoanjacquemin ca3295
	Monotony of surprise and large-scale quest for unusual words. [My Copy] J Comput Biol, Vol. 10, No. 3-4. (2003), pp. 283-311. by A. Apostolico, M. E. Bock, S. Lonardi posted by 3 people wowalz indigoviolet EisenLab
	Transcriptional regulation by the numbers: applications [My Copy] Current Opinion in Genetics & Development, Vol. 15, No. 2. (April 2005), pp. 125-135. by L. Bintu, N. Buchler, H. Garcia, et al.U. Gerland, T. Hwa, J. Kondev, T. Kuhlman, R. Phillips posted by 8 people jjray siebert imouthesmp dpollard madhadron dquest discreteonyxorb EisenLab
	CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes [My Copy] Bioinformatics, Vol. 23, No. 9. (1 May 2007), pp. 1061-1067. by Genis Parra, Keith Bradnam, Ian Korf posted by 9 people operon orzenil guhjy indigoviolet stajich wenhan GustavoLacerda EisenLab Mycology
	Discovering Motifs in Ranked Lists of DNA Sequences [My Copy] PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e39. by Eran Eden, Doron Lipson, Sivan Yogev, Zohar Yakhini posted by 5 people heliopais dpollard dquest EisenLab yevishere
	Large-Scale cis-Element Detection by Analysis of Correlated Expression and Sequence Conservation between Arabidopsis and Brassica oleracea [My Copy] Plant Physiol., Vol. 142, No. 4. (1 December 2006), pp. 1589-1602. by Georg Haberer, Michael T. Mader, Peter Kosarev, Manuel Spannagl, Li Yang, Klaus F. X. Mayer posted by 7 people operon dpollard xwbcn kengg nklee EisenLab xili03
	JIGSAW: integration of multiple sources of evidence for gene prediction. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 18. (15 September 2005), pp. 3596-3603. by Jonathan E. Allen, Steven L. Salzberg posted by 8 people rshe GustavoLacerda azazello jmartin49 indigoviolet stajich wenhan EisenLab
	A genomic code for nucleosome positioning [My Copy] Nature, Vol. 442, No. 7104. (17 August 2006), pp. 772-778. by Eran Segal, Yvonne Fondufe-Mittendorf, Lingyi Chen, et al.Annchristine Thastrom, Yair Field, Irene K. Moore, Ji-Ping Z. Wang, Jonathan Widom posted by 30 people TRHvidsten hagechouchin443 natstreet dakelley kentsis aalibes alokm marcius indigoviolet dchughes cconboy neveaire kengg johncumbers joshuashen joepickrell GustavoLacerda Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience G4ID BioinfoCIPF SGU-CIPF Plantandetc Genetics-of-Gambling rschulz inesdesantiago sonjadaniela
	Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes [My Copy] Genome Res. (7 November 2007), gr.6249707. by Andreas Heger, Chris P. Ponting posted by 8 people Garamonfok operon indigoviolet balicea nklee EisenLab gjuggler hdopazo
	Why Most Published Research Findings Are False [My Copy] PLoS Med, Vol. 2, No. 8. (30 August 2005), e124. by John P. A. Ioannidis posted by 122 people gena MurphysLab bpcusack isp tnhh chriswillmott freesci yujiangwang acockfield pvdg benoitvalley iskanbasal NicolasLescureux ulmer jphekman davebraze Sergey_gerbek cyounkin DavidG67 Horduna LIBrain sona lord_weldaan rubenroa aaltenburger lafuente alexhakkinen NIlz polivares yyfwuhan zzb3886 amargoli CulCog jenniferwilms Bioinformatics - CRUK Stew eshirdel ckai1 monkare scmelton LSK thegoose johntdelaney virolog olberd robertlischke cobi flieder arsyed mrt2k9 schoeband raftlondon steve3001 paleorthid pawelsobko mzkbnt memming mutesa donnachie apgaylard haloin bhengeveld yangjustinc STS Method_Engineering_Services Convention on Knowledge Commons jago Tomste Anesthesia and Acute Pain richardh daforerog UCD SILS IS40340 Research Practice kristinchapman FeltonM7675 pengchy ajaymalik gbodner neteler mixedman Roswell Cancer Crosstalk Zephyrus rklancer guhjy sebpaquet garyfeng monod Borelli jmeppley chad_davis Najamuddin irinas indigoviolet mwyarbro ddahlem dullhunk madhadron balabu jiyu msierk Imat lmi_swap chenlc03 biblio24 pratap kevinemamy cjeans feipan arne suizan jasonbobe austin lonettma buggle ReadingLab EisenLab Sciences_communication_societe dIEMoSIRIS dnugent Malc elsbury shoshin achinerarias
	Gene finding in novel genomes [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (14 May 2004), 59. by Ian Korf posted by 9 people druvus jmartin49 LeightonP indigoviolet wenhan GustavoLacerda EisenLab cmzmasek alexl
	A profile-based deterministic sequential Monte Carlo algorithm for motif discovery. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 1. (1 January 2008), pp. 46-55. by K. C. Liang, X. Wang, D. Anastassiou posted by 9 people bsamal wowalz grahamc cjeans nklee maximilianh idonaldson Motif Discovery isimpson
	An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance [My Copy] BMC Bioinformatics, Vol. 9 (07 February 2008), 89. by Ana C. Casimiro, Susana Vinga, Ana T. Freitas, Arlindo L. Oliveira posted by 5 people bsamal wowalz idonaldson xili03 isimpson
	Identifying the conserved network of cis-regulatory sites of a eukaryotic genome [My Copy] PNAS, Vol. 102, No. 48. (29 November 2005), pp. 17400-17405. by Ting Wang, Gary D. Stormo posted by 8 people aprasad tmmurali indigoviolet kaspermunch emilyhare Bioinformatics EisenLab sconlan
	Approaches to the automatic discovery of patterns in biosequences. [My Copy] J Comput Biol, Vol. 5, No. 2. (1998), pp. 279-305. by A. Brazma, I. Jonassen, I. Eidhammer, D. Gilbert posted by 3 people wowalz dquest treangen
	DNA binding sites: representation and discovery. [My Copy] Bioinformatics (Oxford, England), Vol. 16, No. 1. (January 2000), pp. 16-23. by G. D. Stormo posted by 11 people yylin Bioinformatics - CRUK Stew emptyhb isimpson kaarsinogen mbj dquest lusk ezralanglois xili03
	CSMET: comparative genomic motif detection via multi-resolution phylogenetic shadowing. [My Copy] PLoS computational biology, Vol. 4, No. 6. (6 June 2008), e1000090. by Pradipta Ray, Suyash Shringarpure, Mladen Kolar, Eric P. Xing posted by 9 people dquest emptyhb madreach xili03 djkt cisevol cis-regulatory-evolution Stew Ema
	An evaluation of contemporary hidden Markov model genefinders with a predicted exon taxonomy. [My Copy] Nucleic acids research, Vol. 35, No. 1. (January 2007), pp. 317-324. by Keith Knapp, Yi-Ping Phoebe P. Chen posted by 8 people ronbun_2009au cory_ko jmartin49 azazello indigoviolet wenhan GustavoLacerda EisenLab
	Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome [My Copy] Genome Biology, Vol. 3, No. 12. (2002) by Casey Bergman, Barret Pfeiffer, Diego R. Limas, et al.Roger Hoskins, Andreas Gnirke, Chris Mungall, Adrienne Wang, Brent Kronmiller, Joanne Pacleb, Soo Park, Mark Stapleton, Kenneth Wan, Reed George, Pieter de Jong, Juan Botas, Gerald Rubin, Susan Celniker posted by 8 people hrogers indigoviolet dpollard nklee EisenLab cisevol cis-regulatory-evolution brant
	Predicting tissue-specific enhancers in the human genome [My Copy] Genome Research, Vol. 17, No. 2. (8 February 2007), pp. 201-211. by Len A. Pennacchio, Gabriela G. Loots, Marcelo A. Nobrega, Ivan Ovcharenko posted by 9 people tonamswish cisstem indigoviolet cwbrown EisenLab maximilianh heliopais roys barwil
	BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2001), pp. 127-138. by X. Liu, D. L. Brutlag, J. S. Liu posted by 5 people isimpson farhat wowalz heliopais dquest
	Finding motifs from all sequences with and without binding sites. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 18. (15 September 2006), pp. 2217-2223. by Henry C. Leung, Francis Y. Chin posted by 5 people maximilianh wowalz eckart_bindewald dquest nuin
	Predicting transcription factor affinities to DNA from a biophysical model [My Copy] Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 134-141. by Helge G. Roider, Aditi Kanhere, Thomas Manke, Martin Vingron posted by 7 people Baschl malcook druvus indigoviolet dpollard EisenLab xili03
	Searching for statistically significant regulatory modules. [My Copy] Bioinformatics (Oxford, England), Vol. 19 Suppl 2 (October 2003) by T. L. Bailey, W. S. Noble posted by 7 people wowalz maximilianh indigoviolet stajich EisenLab Mycology xili03
	Computational prediction of eukaryotic protein-coding genes. [My Copy] Nature reviews. Genetics, Vol. 3, No. 9. (September 2002), pp. 698-709. by Michael Q. Zhang posted by 9 people rshe jmartin49 indigoviolet dchughes GustavoLacerda EisenLab G4ID Genetics-of-Gambling wenhan
	TFBS identification based on genetic algorithm with combined representations and adaptive post-processing [My Copy] Bioinformatics In Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 341-349. by Tak-Ming Chan, Kwong-Sak Leung, Kin-Hong Lee posted by 8 people bsamal wowalz nklee maximilianh idonaldson xili03 csdhwang isimpson
	PhyME: a probabilistic algorithm for finding motifs in sets of orthologous sequences. [My Copy] BMC Bioinformatics, Vol. 5 (28 October 2004) by S. Sinha, M. Blanchette, M. Tompa posted by 6 people mgledi eckart_bindewald dquest adsmitty lusk xili03
	Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids [My Copy] (01 July 1999) by Richard Durbin, Sean R. Eddy, Anders Krogh, Graeme Mitchison posted by 17 people adijr esyoun heliopais bicko derek_farn stanley ujh pcahan1 balajis indigoviolet moborg emranmohdtamil dullhunk rabio wenhan EisenLab xiaobeizhao
	An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments. [My Copy] Nature biotechnology, Vol. 20, No. 8. (August 2002), pp. 835-839. by X. Shirley Liu, Douglas L. Brutlag, Jun S. Liu posted by 6 people Dulce troels_marstrand opheliav dquest yevishere xili03