Montrachet's Top Recommendations

These recommendations were last updated 55 days ago.

	Exploration, normalization, and summaries of high density oligonucleotide array probe level data [My Copy] Biostat, Vol. 4, No. 2. (1 April 2003), pp. 249-264. by Rafael A. Irizarry, Bridget Hobbs, Francois Collin, et al.Yasmin D. Beazer-Barclay, Kristen J. Antonellis, Uwe Scherf, Terence P. Speed posted by 32 people jperkins VGreiff lwaldron shikin jfr YukaH huiminC robert85 emptyhb heliopais giovenko winterschlaefer miguel textoris Dax42 RMGraze fisherp tvdbulck dtc1 vpschulz rmk joepickrell ghattem bertelsen jo_davies MathBio Bioinformatics Computational_Systems_Biology Systems_Biology waszak bakakaj vertikalist
	Microarray data analysis: from disarray to consolidation and consensus. [My Copy] Nature reviews. Genetics, Vol. 7, No. 1. (01 January 2006), pp. 55-65. by David B. Allison, Xiangqin Cui, Grier P. Page, Mahyar Sabripour posted by 35 people stharward antonkratz ipark-kaist svozil bertelsen Bioinformatics - CRUK Stew daforerog winterschlaefer verdicchio guhjy barry textoris jfr Ayest balicea sterovetta lhonigberg acidwizard ronaldozhou vpschulz rmk schuylrp Garamonfok debasis GeeSharpMinor dimatura structural_bioinformatics Bioinformatics heliopais shikin minostro giovenko jo_davies aviad_work
	Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles [My Copy] Proceedings of the National Academy of Sciences of the United States of America In Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550. by Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha, et al.Sayan Mukherjee, Benjamin L. Ebert, Michael A. Gillette, Amanda Paulovich, Scott L. Pomeroy, Todd R. Golub, Eric S. Lander, Jill P. Mesirov posted by 54 people jmstat mysickova buyske bertelsen Jporci gbloeb miskar giovenko greg dolchan pattersonee mhamidi jperkins zufar ptrobajo antonkratz yaredo tmmurali VGreiff daforerog paszkows ipark-kaist ajbattle jessopher askrajiv idonaldson ihpark chrisamiller dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet Bioinformatics BioinfoCIPF GeschwindLab Indigene heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH
	A review of feature selection techniques in bioinformatics [My Copy] Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2507-2517. by Yvan Saeys, Inaki Inza, Pedro Larranaga posted by 31 people corgan orzenil Shibby zufar stharward jjrodriguez briordan phoenixzxl ipark-kaist prerna svozil bertelsen VGreiff rsantana druvus jfr giovenko guhjy chad_davis aviad_work frohike grahamc shigepong lp2 cabbagezs ryanraaum Bioinformatics vietanh0 eacosta aaalxy srp33
	Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists [My Copy] Nucl. Acids Res., Vol. 37, No. 1. (1 January 2009), pp. 1-13. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted by 51 people icecrown natstreet provero psique darian chasmand hzoltan ipark-kaist giovenko lwaldron jcaddy antonkratz Zephyrus shikin yaredo tonamswish ddunbar robfsouza Keywan daforerog ptrobajo rdiaz bertelsen Bioinformatics - CRUK Stew inesdesantiago heliopais ConklinLab AlexanderPico aviad_work ekotelnikova frohike aramesh2 jfr zufar ilyashl dolchan paszkows lptolik thomaskelder AbnerCYH neils tmmurali ealloza barriot druvus renatomilani pengchy phoenixzxl guhjy sjcockell
	Summaries of Affymetrix GeneChip probe level data. [My Copy] Nucleic acids research In Nucl. Acids Res., Vol. 31, No. 4. (15 February 2003), e15. by Rafael A. Irizarry, Benjamin M. Bolstad, Francois Collin, Leslie M. Cope, Bridget Hobbs, Terence P. Speed posted by 19 people frohike jperkins daforerog lwaldron shikin dswan huiminC pcahan1 RMGraze aviad_work vplagnol ghattem talponer heliopais wirawan waszak rschulz bertelsen srp33
	The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. [My Copy] Nature biotechnology, Vol. 24, No. 9. (September 2006), pp. 1151-1161. by , L. Shi, L. H. Reid, et al.W. D. Jones, R. Shippy, J. A. Warrington, S. C. Baker, P. J. Collins, F. de Longueville, E. S. Kawasaki, K. Y. Lee, Y. Luo, Y. A. Sun, J. C. Willey, R. A. Setterquist, G. M. Fischer, W. Tong, Y. P. Dragan, D. J. Dix, F. W. Frueh, F. M. Goodsaid, D. Herman, R. V. Jensen, C. D. Johnson, E. K. Lobenhofer, R. K. Puri, U. Schrf, J. Thierry-Mieg, C. Wang, M. Wilson, P. K. Wolber, L. Zhang, S. Amur, W. Bao, C. C. Barbacioru, A. B. Lucas, V. Bertholet, C. Boysen, B. Bromley, D. Brown, A. Brunner, R. Canales, X. M. Cao, T. A. Cebula, J. J. Chen, J. Cheng, T. M. Chu, E. Chudin, J. Corson, J. C. Corton, L. J. Croner, C. Davies, T. S. Davison, G. Delenstarr, X. Deng, D. Dorris, A. C. Eklund, X. H. Fan, H. Fang, S. Fulmer-Smentek, J. C. Fuscoe, K. Gallagher, W. Ge, L. Guo, X. Guo, J. Hager, P. K. Haje, J. Han, T. Han, H. C. Harbottle, S. C. Harris, E. Hatchwell, C. A. Hauser, S. Hester, H. Hong, P. Hurban, S. A. Jackson, H. Ji, C. R. Knight, W. P. Kuo, J. E. LeClerc, S. Levy, Q. Z. Li, C. Liu, Y. Liu, M. J. Lombardi, Y. Ma, S. R. Magnuson, B. Maqsodi, T. McDaniel, N. Mei, O. Myklebost, B. Ning, N. Novoradovskaya, M. S. Orr, T. W. Osborn, A. Papallo, T. A. Patterson, R. G. Perkins, E. H. Peters, R. Peterson, K. L. Philips, P. S. Pine, L. Pusztai, F. Qian, H. Ren, M. Rosen, B. A. Rosenzweig, R. R. Samaha, M. Schena, G. P. Schroth, S. Shchegrova, D. D. Smith, F. Staedtler, Z. Su, H. Sun, Z. Szallasi, Z. Tezak, D. Thierry-Mieg, K. L. Thompson, I. Tikhonova, Y. Turpaz, B. Vallanat, C. Van, S. J. Walker, S. J. Wang, Y. Wang, R. Wolfinger, A. Wong, J. Wu, C. Xiao, Q. Xie, J. Xu, W. Yang, L. Zhang, S. Zhong, Y. Zong, W. Slikker posted by 19 people VGreiff bertelsen lwaldron daforerog rdiaz jo_davies pengchy kentsis jfr jdiggans qmwwallace cberry shigepong caseybrown giovenko shikin slevy03 guhjy vmsr
	Network-based classification of breast cancer metastasis. [My Copy] Molecular systems biology, Vol. 3 (16 October 2007) by Han-Yu Y. Chuang, Eunjung Lee, Yu-Tsueng T. Liu, Doheon Lee, Trey Ideker posted by 35 people gowtham yaredo Complex Networks fesousa ipark-kaist aviad_work AbnerCYH zufar provero jmuhlich Zephyrus Jarman Lab ggallone giovenko winterschlaefer isimpson ihpark bertelsen jfr kengg frohike mikaelhuss cjeans zwang cerami abhattac Bioinformatics shikin oelemento roys GeneGo ptrobajo dap5087 saman_vp verdicchio
	Integration of biological networks and gene expression data using Cytoscape. [My Copy] Nature protocols, Vol. 2, No. 10. (27 September 2007), pp. 2366-2382. by Melissa S. Cline, Michael Smoot, Ethan Cerami, et al.Allan Kuchinsky, Nerius Landys, Chris Workman, Rowan Christmas, Iliana Avila-Campilo, Michael Creech, Benjamin Gross, Kristina Hanspers, Ruth Isserlin, Ryan Kelley, Sarah Killcoyne, Samad Lotia, Steven Maere, John Morris, Keiichiro Ono, Vuk Pavlovic, Alexander R. Pico, Aditya Vailaya, Peng-Liang L. Wang, Annette Adler, Bruce R. Conklin, Leroy Hood, Martin Kuiper, Chris Sander, Ilya Schmulevich, Benno Schwikowski, Guy J. Warner, Trey Ideker, Gary D. Bader posted by 22 people icecrown daveGerrard greg badi ptrobajo tonamswish daforerog bertelsen Cortel cswinburne giovenko isimpson emmackinnon yaredo Stew guhjy jfr shikin shung thomaskelder GeneGo AlexanderPico
	miRNomics—The bioinformatics of microRNA genes [My Copy] Biochemical and Biophysical Research Communications, Vol. 363, No. 1. (09 November 2007), pp. 6-11. by Z. Ghosh, J. Chakrabarti, B. Mallick posted by 14 people guhjy giovenko druvus jfr skhadar andersbj dchughes microRNA G4ID Genetics-of-Gambling heliopais delenca maralena natstreet
	Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007), pp. i282-288. by Wei Keat K. Lim, Kai Wang, Celine Lefebvre, Andrea Califano posted by 13 people jperkins jeremymiller lawraga bertelsen frohike huiminC dubhelix giovenko pengchy aramesh2 shigepong ghattem heliopais
	Analyzing gene expression data in terms of gene sets: methodological issues [My Copy] Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 980-987. by Jelle J. Goeman, Peter Buhlmann posted by 23 people hzoltan zufar srp33 bertelsen jperkins ptrobajo VGreiff tonamswish ipark-kaist aramesh2 ydhwang shikin raiyar SIMR bioinformatics ghattem jfr ealloza shigepong BioinfoCIPF heliopais guhjy diging_data BTS-PT-AS-CS
	Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Scott Carter, Aron Eklund, Brigham Mecham, Isaac Kohane, Zoltan Szallasi posted by 4 people frohike giovenko bertelsen heliopais
	GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor. [My Copy] Bioinformatics (12 May 2007) by Sean Davis, Paul S S. Meltzer posted by 13 people manduca brianb Bioinformatics dswan neils shikin guhjy jfr ugengma giovenko ablejec zhouyu bertelsen
	A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array [My Copy] Nucleic Acids Research, Vol. 33, No. 3. (2005), pp. e31-e31. by Jeremy Harbig, Robert Sprinkle, Steven A. Enkemann posted by 4 people jfr incovoma heliopais bertelsen
	Linear models and empirical bayes methods for assessing differential expression in microarray experiments. [My Copy] Statistical applications in genetics and molecular biology, Vol. 3, No. 1. (2004) by Gordon K. Smyth posted by 21 people schwalb shikin bertelsen jperkins zoex_99 ipark-kaist lwaldron paszkows isimpson Bioinformatics - CRUK Stew ihpark giovenko RMGraze maryee mayercd justescaped ugengma heliopais guhjy talponer
	Improved precision and accuracy for microarrays using updated probe set definitions [My Copy] BMC Bioinformatics, Vol. 8 (08 February 2007), 48. by Rickard Sandberg, Ola Larsson posted by 8 people shikin lwaldron jfr gpalidwor shigepong ghattem heliopais bertelsen
	Statistical significance for genomewide studies [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 16. (5 August 2003), pp. 9440-9445. by John D. Storey, Robert Tibshirani posted by 37 people jperkins arider1 ilyashl icecrown bertelsen jbhiatt aviad_work biomcgary daforerog treangen druvus vertikalist maximilianh BTS-PT-AS-CS diging_data egreenfest guhjy textoris RMGraze jen_drake hggr frohike schuylrp grahamc incovoma kynn sancho 7ofAnn nicholso Bioinformatics shikin wirawan BrianTomasik roys sconlan zhouyu bpcusack
	Filtering genes to improve sensitivity in oligonucleotide microarray data analysis. [My Copy] Nucleic Acids Res (15 August 2007) by Stefano Calza, Wolfgang Raffelsberger, Alexander Ploner, Jose Sahel, Thierry Leveillard, Yudi Pawitan posted by 9 people bertelsen heliopais frohike guhjy jfr rdiaz niallhaslam waszak laral
	Probe set algorithms: is there a rational best bet? [My Copy] BMC bioinformatics, Vol. 7 (30 August 2006), 395. by Jinwook Seo, Eric P. Hoffman posted by 8 people ericrpaquet lwaldron heliopais jfr ghattem rschulz bertelsen shikin
	Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips [My Copy] BMC Bioinformatics, Vol. 8 (15 January 2007), 13. by Maria A. Stalteri, Andrew P. Harrison posted by 9 people sebastien_vigneau guhjy jfr gpalidwor hpiwowar frohike ghattem bertelsen heliopais
	Origin of phenotypes: genes and transcripts. [My Copy] Genome research, Vol. 17, No. 6. (June 2007), pp. 682-690. by T. R. Gingeras posted by 15 people inesdesantiago klo guhjy balicea xico dchughes michC ghattem Garamonfok Jporci Bioinformatics WetBiology G4ID Genetics-of-Gambling bertelsen
	Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset. [My Copy] Genome Biol, Vol. 6, No. 2. (2005) by S. E. Choe, M. Boutros, A. M. Michelson, G. M. Church, M. S. Halfon posted by 10 people bertelsen lwaldron heliopais xwbcn jeremymiller ccr ghattem GeschwindLab waszak daforerog
	Alternative mapping of probes to genes for Affymetrix chips. [My Copy] BMC Bioinformatics, Vol. 5 (14 August 2004) by L. Gautier, M. Møller, L. Friis-Hansen, S. Knudsen posted by 5 people frohike sebastien_vigneau ghattem heliopais bertelsen
	The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists [My Copy] Genome Biology, Vol. 8, No. 9. (04 September 2007), R183. by Da Huang, Brad Sherman, Qina Tan, et al.Jack Collins, W. Gregory Alvord, Jean Roayaei, Robert Stephens, Michael Baseler, H. Clifford Lane, Richard Lempicki posted by 10 people VGreiff bertelsen ndiaz guhjy aalibes dragonrez jfr rdiaz mellabee heliopais
	Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: High-resolution annotation for microarrays [My Copy] BMC Bioinformatics, Vol. 8 (29 March 2007), 108. by Jun Lu, Joseph C. Lee, Marc L. Salit, Margaret C. Cam posted by 7 people heliopais guhjy jfr frohike ghattem Bioinformatics bertelsen
	What is a gene, post-ENCODE? History and updated definition [My Copy] Genome Research, Vol. 17, No. 6. (June 2007), pp. 669-681. by Mark B. Gerstein, Can Bruce, Joel S. Rozowsky, et al.Deyou Zheng, Jiang Du, Jan O. Korbel, Olof Emanuelsson, Zhengdong D. Zhang, Sherman Weissman, Michael Snyder posted by 43 people idoerg Zephyrus daforerog daveGerrard Yanno inesdesantiago kentz ddcttrl bertelsen tmarscha thegoose2 burak guhjy carolh12 eweaver dpollard balicea dchughes dullhunk madhadron cottrell grahamc egonw ghattem sujaikumar Garamonfok PunkRock jasonbobe PredictER cabbagezs Jporci kmdaily krokicki antonkratz Bioinformatics EisenLab G4ID Genetics-of-Gambling Minty hpaces tharris altotor mjoach
	Next-generation DNA sequencing [My Copy] Nature Biotechnology In Nat Biotech, Vol. 26, No. 10. (09 October 2008), pp. 1135-1145. by Jay Shendure, Hanlee Ji posted by 53 people tux2000 JamesBarger darian burak Jporci daforerog dchughes hzoltan cthachuk giovenko heliopais seb1 installe niallhaslam Vincent_Rouilly rschulz fishtank bluto Annab katholt jmcq michaelbarton n00c jfr dna nzm farhat idoerg mhz mmartin jbhiatt yupu Bioinformatics behindtherabbit guhjy Pascalichouchou frohike dakelley ptrobajo zwang Roswell Cancer Crosstalk Zephyrus psique natstreet druvus nuin alexknight reyez dbk Oxford Virology wsjames pengchy GeeSharpMinor
	Bioconductor: open software development for computational biology and bioinformatics. [My Copy] Genome biology, Vol. 5, No. 10. (2004), R80. by Robert C. Gentleman, Vincent J. Carey, Douglas M. Bates, et al.Ben Bolstad, Marcel Dettling, Sandrine Dudoit, Byron Ellis, Laurent Gautier, Yongchao Ge, Jeff Gentry, Kurt Hornik, Torsten Hothorn, Wolfgang Huber, Stefano Iacus, Rafael Irizarry, Friedrich Leisch, Cheng Li, Martin Maechler, Anthony J. Rossini, Gunther Sawitzki, Colin Smith, Gordon Smyth, Luke Tierney, Jean Y. Yang, Jianhua Zhang posted by 27 people shikin schwalb mqbphcw3 isimpson anf sebastien_vigneau najwvandijk coela YukaH daforerog czeller gupton Dax42 pcahan1 balajis dullhunk giovanni incovoma talponer GeschwindLab medha1 wirawan joule zhouyu bertelsen sanchezbuelna bakakaj
	Significance analysis of microarrays applied to the ionizing radiation response. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 9. (24 April 2001), pp. 5116-5121. by V. G. Tusher, R. Tibshirani, G. Chu posted by 20 people jperkins ipark-kaist bertelsen daforerog marboe roys ihpark bassene frohike paszkows miguel jen_drake gpalidwor olympos ccr incovoma ugengma shikin askrajiv renatomilani
	Testing significance relative to a fold-change threshold is a TREAT. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 765-771. by Davis J. McCarthy, Gordon K. Smyth posted by 14 people shikin Bioinformatics jfr VGreiff lwaldron rschulz kmdaily rdiaz heliopais dswan bertelsen guhjy renatomilani paszkows
	The utility of MAS5 expression summary and detection call algorithms [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Stuart Pepper, Emma Saunders, Laura Edwards, Claire Wilson, Crispin Miller posted by 8 people dswan lwaldron frohike heliopais jfr ryanraaum wirawan waszak
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven Salzberg posted by 44 people oannes mijam nuin jfr hzoltan cthachuk darshan fstrozzi adijr debasis bozdagd BergmanLab polivares torfinnnome n00c talponer jmcq rschulz SIMR bioinformatics ghattem operon humburg idonaldson mmartin iSEEM skembel dquest heliopais djkt GeeSharpMinor bertelsen darian Notre Dame Bioinformatics semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus
	Integrating physical and genetic maps: from genomes to interaction networks [My Copy] Nature Reviews Genetics, Vol. 8, No. 9. (01 September 2007), pp. 699-710. by Andreas Beyer, Sourav Bandyopadhyay, Trey Ideker posted by 26 people tronella Jporci dakelley chasmand mtaschuk Roswell Cancer Crosstalk Zephyrus druvus yyby misonneh giovenko bpcusack guhjy balicea dchughes sebastien_vigneau grahamc joepickrell zwang Bioinformatics G4ID Genetics-of-Gambling shikin lh1 cdeane carlk
	Network biology: understanding the cell's functional organization. [My Copy] Nature reviews. Genetics, Vol. 5, No. 2. (February 2004), pp. 101-113. by Albert-László L. Barabási, Zoltán N. Oltvai posted by 51 people schwartzjmc daforerog fastjoe23 arsyed thepogoman mtagaya camster snuppepuppan dbk greg guhjy LeightonP hununu felciano mague kuhn textoris rhem1224 lfriedl balajis alexg wnpx jknabe adepace nickluscombe bundschu awooga jdiggans jeremymiller uprock timflutre mikaelhuss gcalda grahamc fishtank jayster4 naegele streptomyces dbk-lab kdl EisenLab TCR_Signaling EBI-regulation SysbioMPI-TCells GeschwindLab generif_paper Evangelia heliopais shikin GeneGo hryk
	A Quick Guide to Organizing Computational Biology Projects [My Copy] PLoS Comput Biol In PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000424. by William S. Noble posted by 86 people aprasad okapi abhishek_tiwari agomez songpku shikin kemamy2 chvlyl freesci dfdong dutilh leliavski dgront paulymer FAB-lab rvosa installe burak annakcroft brianb nuin skembel pekrau Sergey_gerbek mordiano remoteFuture Yanno Pedro Martinez EvoDevo lab Barcelona aaltenburger marekrud guhjy dolchan frohike operon Orengo Group Journal Picks CorinYeats artaban421 antonkratz tomhebbron maren bayesian daveGerrard JoeBanks jcaddy somak bertelsen ptrobajo nperoni daforerog mmwoodman charris5 GustavoLacerda pmendes fgibson rdiaz Zephyrus heliopais franklu310 lmichan silberbauer leemond31 jlangdon robfsouza Bioinformatics - CRUK Stew pmung reyez kshameer djkt pawelsobko jjray dswan apaydin renatomilani VGreiff cabbagesofdoom ccsbs wei_tang fenghezi BergmanLab cisevol structural_bioinformatics McCammon barry sdaehne druvus
	Discovering statistically significant pathways in expression profiling studies. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 38. (20 September 2005), pp. 13544-13549. by Lu Tian, Steven A. Greenberg, Sek Won W. Kong, Josiah Altschuler, Isaac S. Kohane, Peter J. Park posted by 15 people bertelsen zufar yaredo VGreiff daforerog ipark-kaist dragonrez maryee ealloza frohike justescaped BioinfoCIPF srp33 giovenko heliopais
	Use and misuse of the gene ontology annotations [My Copy] Nature Reviews Genetics, Vol. 9, No. 7. (13 May 2008), pp. 509-515. by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici posted by 45 people lisa1 singhsh epigenetics davidmam Thaverkamp druvus dullhunk 8_01 suizan dolchan Borelli Zephyrus VGreiff klo thomaskelder ilyashl phoenixzxl MarcoAlvarez isakemal bertelsen daforerog jfr djkt guhjy aheilbut mariakmejia cmzmasek A_Olympia logics of knowledge realzhang carlk roys gjuggler fpattyn RamuAnandakrishnan ptrobajo giovenko cabbagesofdoom tmmurali renatomilani capitall marck rvosa FAB-lab bpcusack
	Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing [My Copy] Journal of the Royal Statistical Society. Series B (Methodological), Vol. 57, No. 1. (1995), pp. 289-300. by Yoav Benjamini, Yosef Hochberg posted by 44 people arider1 Biostatistics ctacmo abrentnall jperkins CulCog jlorent zufar bertelsen Zephyrus fisherp michaelbarton dakelley lwaldron polivares brianb ucbcjbm jfr xingxu emptyhb renewang Yanno sdvillal druvus natstreet czeller guhjy RMGraze oannes vplagnol frohike grahamc shigepong ccr axelon ugengma amsantos Bioinformatics Regulomics_UCHSC rschulz dragonrez isimpson vertikalist BTS-PT-AS-CS
	Three methods for optimization of cross-laboratory and cross-platform microarray expression data. [My Copy] Nucleic Acids Res, Vol. 35, No. 10. (2007) by P. Stafford, M. Brun posted by 6 people shigepong ptrobajo heliopais guhjy jfr bertelsen
	A Quick Guide to Teaching R Programming to Computational Biology Students [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000482. by Stephen J. Eglen posted by 71 people provero PabloMarin idonaldson bsamal nuin kaliczp maren sobolevnrm ltitodem zchen75 artaban421 natstreet jasonn tomhebbron psique Bioinformatics - CRUK Stew eshirdel guhjy polivares ajw fishtank diamantis fastjoe23 kshameer daveGerrard hrogers JoeBanks BergmanLab cisevol srijit hwright Ayest VGreiff welliegirl asadrahman rdiaz ptrobajo heliopais coffeerv Vincent_Rouilly marekrud tnhh barry ansobol Zephyrus walshtp bertelsen fgibson pkonings Borelli klauso dlizcano dswan skembel djkt jclau lwaldron phoenixzxl timhubbard eLearning in Leicester AJCann thegoose dullhunk brianb neils silberbauer daforerog Journal picks ppgardne druvus
	Effects of filtering by Present call on analysis of microarray experiments. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by J. N. McClintick, H. J. Edenberg posted by 7 people aviad_work jfr bertelsen heliopais ghattem waszak yevishere
	A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing [My Copy] Cell, Vol. 129, No. 7. (29 June 2007), pp. 1401-1414. by Pablo Landgraf, Mirabela Rusu, Robert Sheridan, et al.Alain Sewer, Nicola Iovino, Alexei Aravin, Sébastien Pfeffer, Amanda Rice, Alice O. Kamphorst, Markus Landthaler posted by 21 people hzoltan fishtank harel_shein frohike qfwills lp2 ealloza guhjy jfr andersbj rahulthadani xiuminyan Bioinformatics microRNA heliopais maralena giovenko delenca caseybrown yoonk gdb
	Ontological analysis of gene expression data: current tools, limitations, and open problems [My Copy] Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3587-3595. by Purvesh Khatri, Sorin Draghici posted by 20 people darian bertelsen jperkins ipark-kaist gjuggler isakemal Bioinformatics - CRUK Stew shikin diamantis Cortel dragonrez macavity1g Garamonfok sgoetz heliopais kristen yggdrasil ellakat marck
	The Systems Biology Graphical Notation [My Copy] Nature Biotechnology, Vol. 27, No. 8. (07 August 2009), pp. 735-741. by Nicolas L. Novere, Michael Hucka, Huaiyu Mi, et al.Stuart Moodie, Falk Schreiber, Anatoly Sorokin, Emek Demir, Katja Wegner, Mirit I. Aladjem, Sarala M. Wimalaratne, Frank T. Bergman, Ralph Gauges, Peter Ghazal, Hideya Kawaji, Lu Li, Yukiko Matsuoka, Alice Villeger, Sarah E. Boyd, Laurence Calzone, Melanie Courtot, Ugur Dogrusoz, Tom C. Freeman, Akira Funahashi, Samik Ghosh, Akiya Jouraku, Sohyoung Kim, Fedor Kolpakov, Augustin Luna, Sven Sahle, Esther Schmidt, Steven Watterson, Guanming Wu, Igor Goryanin, Douglas B. Kell, Chris Sander, Herbert Sauro, Jacky L. Snoep, Kurt Kohn, Hiroaki Kitano posted by 46 people agomez heliopais kshameer nuin singhsh greg tonamswish pablocarb josepe abc623 daforerog abhishek_tiwari Orengo Group Journal Picks robertrentzsch ngehlenborg pekrau thegoose bertelsen fgibson Borelli thomaskelder pmendes dullhunk polivares chasmand brianb roys torfinnnome guhjy Zephyrus lenov reyez allysonlister apocapoc renatomilani VGreiff druvus sjcockell Journal picks jandot megraw leliavski frohike Neuroblastoma fpattyn jhyang
	Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer. [My Copy] Lancet, Vol. 365, No. 9460. (5 2005), pp. 671-679. by Yixin Wang, Jan G. Klijn, Yi Zhang, et al.Anieta M. Sieuwerts, Maxime P. Look, Fei Yang, Dmitri Talantov, Mieke Timmermans, Marion E. Meijer-van Gelder, Jack Yu, Tim Jatkoe, Els M. Berns, David Atkins, John A. Foekens posted by 15 people tonamswish yaredo lwaldron provero windman83 laral jfr tuck giovanni frohike cberry Bioinformatics GeschwindLab giovenko winterschlaefer
	Core Signaling Pathways in Human Pancreatic Cancers Revealed by Global Genomic Analyses [My Copy] Science (4 September 2008), 1164368. by Sian Jones, Xiaosong Zhang, D. Williams Parsons, et al.Jimmy C. Lin, Rebecca J. Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, Hirohiko Kamiyama, Antonio Jimeno, Seung-Mo Hong, Baojin Fu, Ming-Tseh Lin, Eric S. Calhoun, Mihoko Kamiyama, Kimberly Walter, Tatiana Nikolskaya, Yuri Nikolsky, James Hartigan, Douglas R. Smith, Manuel Hidalgo, Steven D. Leach, Alison P. Klein, Elizabeth M. Jaffee, Michael Goggins, Anirban Maitra, Christine Iacobuzio-Donahue, James R. Eshleman, Scott E. Kern, Ralph H. Hruban, Rachel Karchin, Nickolas Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E. Velculescu, Kenneth W. Kinzler posted by 22 people zufar jbhiatt dolchan wimufi jo_davies srp33 jfr whh98 roys cmzmasek thomaskelder fongkoh ConklinLab AlexanderPico SaraNasser renatomilani brianb GeneGo shikin Roswell Cancer Crosstalk songpku giovenko
	An integrated genomic analysis of human glioblastoma multiforme. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5897. (26 September 2008), pp. 1807-1812. by D. Williams Parsons, Siân Jones, Xiaosong Zhang, et al.Jimmy Cheng-Ho C. Lin, Rebecca J. Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, I-Mei M. Siu, Gary L. Gallia, Alessandro Olivi, Roger McLendon, B. Ahmed Rasheed, Stephen Keir, Tatiana Nikolskaya, Yuri Nikolsky, Dana A. Busam, Hanna Tekleab, Luis A. Diaz, James Hartigan, Doug R. Smith, Robert L. Strausberg, Suely Kazue Nagahashi K. Marie, Sueli Mieko Oba M. Shinjo, Hai Yan, Gregory J. Riggins, Darell D. Bigner, Rachel Karchin, Nick Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E. Velculescu, Kenneth W. Kinzler posted by 18 people VGreiff stubrown Zephyrus zufar dolchan frohike caseybrown wimufi jfr srp33 renatomilani brianb GeneGo shikin aheilbut Roswell Cancer Crosstalk songpku giovenko
	How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by F. F. Millenaar, J. Okyere, S. T. May, M. van Zanten, L. A. Voesenek, A. J. Peeters posted by 8 people lwaldron heliopais GeeSharpMinor jfr neveaire ghattem waszak pure39
	A systems biology approach for pathway level analysis [My Copy] Genome Research, Vol. 17, No. 10. (4 October 2007), pp. 1537-1545. by Sorin Draghici, Purvesh Khatri, Adi L. Tarca, et al.Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero posted by 25 people zufar bertelsen tonamswish gbloeb cgaugain ptrobajo pengchy tmmurali dragonrez jfr gurkanbebek grahamc shigepong zwang cabbagezs cerami xingxu Bioinformatics shikin idonaldson Pao-Yang OPIG thomaskelder heliopais AlexanderPico
	Bayesian methods in bioinformatics and computational systems biology. [My Copy] Briefings in bioinformatics, Vol. 8, No. 2. (12 March 2007), pp. 109-116. by Darren J. Wilkinson posted by 24 people daforerog shikin jb44 gamberina tonamswish red446 svozil VGreiff guhjy Borelli jfr wnpx neveaire zwang bertelsen cabbagezs Bioinformatics julesyoo blobbybirdman hpaces vietanh0 waszak i-stevenson quianominorleo
	[2] Analyzing Micro‐RNA Expression Using Microarrays [My Copy] Methods in Enzymology, Vol. 411 (2006), pp. 14-34. by T. Davison, C. Johnson, B. Andruss posted by 6 people gdb VGreiff bertelsen shikin giovenko farhat
	Characterization of microRNA expression profiles in normal human tissues. [My Copy] BMC genomics, Vol. 8, No. 1. (12 June 2007), 166. by Yu Liang, Dana Ridzon, Linda Wong, Caifu Chen posted by 10 people daforerog qfwills ealloza giovenko jfr frohike bootsy Bioinformatics microRNA heliopais
	Mapping and quantifying mammalian transcriptomes by RNA-Seq [My Copy] Nature Methods In Nat Meth, Vol. 5, No. 7. (30 May 2008), pp. 621-628. by Ali Mortazavi, Brian A. Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold posted by 48 people ongenetics cajunsushi davidmam manduca cthachuk hzoltan jwfoley heliopais juokcho aktas debasis bertelsen idonaldson darian stubrown Bioinformatics dswan ewilban1 mtagaya woodson8 burak jonilaserson inesdesantiago ThomasDOtto n00c GustavoG SIMR bioinformatics ghattem vplagnol druvus cfvillalta vmsr poschm dandaman shikin jmcq rschulz lp2 tmcphillips jfr myourshaw megraw GeeSharpMinor caseybrown xingxu guhjy shurjo gdb
	From signatures to models: understanding cancer using microarrays [My Copy] Nature Genetics, Vol. 37 Suppl (01 June 2005), pp. S38-S45. by Eran Segal, Nir Friedman, Naftali Kaminski, Aviv Regev, Daphne Koller posted by 16 people frohike bertelsen chasmand roys lwaldron cswinburne aalibes textoris troels_marstrand wnpx nirfriedman rdiaz sampath shikin GeneGo srp33
	Identification of functional modules using network topology and high-throughput data. [My Copy] BMC systems biology, Vol. 1, No. 1. (2007), 8. by Igor Ulitsky, Ron Shamir posted by 19 people greg akshayk ptrobajo yaredo isimpson qluo aheilbut zufar roys frohike tmmurali dragonrez jfr wnpx Ao_Li2007 lyndon bertelsen ellakat carlk
	Repeatability of published microarray gene expression analyses. [My Copy] Nature genetics, Vol. 41, No. 2. (28 February 2009), pp. 149-155. by John P. Ioannidis, David B. Allison, Catherine A. Ball, et al.Issa Coulibaly, Xiangqin Cui, Aedín C. Culhane, Mario Falchi, Cesare Furlanello, Laurence Game, Giuseppe Jurman, Jon Mangion, Tapan Mehta, Michael Nitzberg, Grier P. Page, Enrico Petretto, Vera van Noort posted by 23 people hzoltan Roswell Cancer Crosstalk heliopais ericrpaquet guhjy greg frohike TRHvidsten giovenko jfr rdiaz zufar ptrobajo floatingpoint felsani nuin daforerog cabbagesofdoom dswan Zephyrus inesdesantiago djkt paszkows
	How does eukaryotic gene prediction work? [My Copy] Nature Biotechnology, Vol. 25, No. 8. (01 August 2007), pp. 883-885. by Michael R. Brent posted by 12 people Jporci guhjy indigoviolet dchughes wenhan zwang cabbagezs nklee EisenLab G4ID Genetics-of-Gambling ale
	How to infer gene networks from expression profiles [My Copy] Mol Syst Biol, Vol. 3 (13 February 2007) by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo posted by 45 people jmstat sarikamehra frohike Jporci beete tonamswish zufar nicholasflann icq242500260 guhjy Zephyrus antonkratz phoenixzxl bertelsen isimpson daforerog poirel agonzale roys Neeperando APRegier rdiaz klo Borelli Jarman Lab ggallone ptrobajo druvus cswinburne jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet EBI-regulation Plantandetc heliopais mariakmejia tmmurali
	Argonaute Proteins: Mediators of RNA Silencing [My Copy] Molecular Cell, Vol. 26, No. 5. (08 June 2007), pp. 611-623. by Lasse Peters, Gunter Meister posted by 10 people altotor microRNA heliopais guhjy dchughes alwinpremanand G4ID Genetics-of-Gambling zhanghuiqiong balicea
	Moving toward a system genetics view of disease. [My Copy] Mamm Genome (26 July 2007) by Solveig K. Sieberts, Eric E. Schadt posted by 10 people flbarroso daforerog roys guhjy dchughes jo_davies G4ID Genetics-of-Gambling lp2 raiyar
	Cytoscape: a software environment for integrated models of biomolecular interaction networks. [My Copy] Genome research, Vol. 13, No. 11. (November 2003), pp. 2498-2504. by Paul Shannon, Andrew Markiel, Owen Ozier, et al.Nitin S. Baliga, Jonathan T. Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker posted by 38 people JeremyZucker daveGerrard fastjoe23 badi stharward kentz tonamswish janani137 shung schwartzjmc APRegier panghouse robert85 capitall higueruelo shikin daforerog cswinburne thomaskelder nolodie giovenko Stew dragonrez balajis tvdbulck frohike carmaus dagmar natstreet jlh64 dIEMoSIRIS MoSi-Rostock compneur Evangelia pmendes yggdrasil carlk Borelli
	Inferring cellular networks - a review [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 6. (2007), S5. by Florian Markowetz, Rainer Spang posted by 16 people jaspervoskuilen antonkratz daforerog chica ocs roys cswinburne ndiaz edwardmorrissey guhjy tmmurali shigepong dejori heliopais bertelsen czeller
	A Model-Based Background Adjustment for Oligonucleotide Expression Arrays [My Copy] Journal of the American Statistical Association, Vol. 99, No. 468., 909. by Zhijin Wu, Rafael A. Irizarry, Robert Gentleman, Francisco Martinez-Murillo, Forrest Spencer posted by 11 people jperkins schwalb GeneGo shikin karinlag GeeSharpMinor RMGraze thomlo nicholso jo_davies bertelsen
	Network Motifs: Simple Building Blocks of Complex Networks [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 824-827. by R. Milo, S. Shen-Orr, S. Itzkovitz, N. Kashtan, D. Chklovskii, U. Alon posted by 84 people kubyaddi antonkratz jaspervoskuilen complex networks Sergey_gerbek nurban balabu ocs mjoach makrehchi schwartzjmc poirel tomhebbron arsyed vtraag sergiun fierykylin Akimasa operon GEB dlobo daforerog chasmand wei_tang darian orahcio babakap brewbooks phoenixzxl Md_2007 mtagaya heliopais kaarsinogen galyardt cswinburne mullonc camster korakot aalibes ChaTo imouthesmp Borelli lfriedl alexg balicea tny ssb wnpx ddahlem cmm donade neveaire griota gurkanbebek jtaylor josepe iris_2001 michaelmampaey rebeccamancy karfunkel lenov Philosophy_of_Information dbk-lab Blog_and_Wiki_Research kdl FAB-lab ColDyn ADMiRes Evangelia roys tfogal zibuyu maralena stefanoallesina pbull cmor renatomilani shikin GeneGo carlk applesnow subhacom i-stevenson ethkim
	Genomic analysis of human microRNA transcripts [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 45. (6 November 2007), pp. 17719-17724. by Harpreet K. Saini, Sam Griffiths-Jones, Anton J. Enright posted by 20 people danaiancu tonamswish daforerog druvus microRNA heliopais jfr guhjy tmmurali dchughes AbnerCYH ealloza bootsy lp2 cabbagezs maximilianh RedmondSmyth gracio maralena tolot27
	Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome [My Copy] Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 760-774. by Elliott H. Margulies, Gregory M. Cooper, George Asimenos, et al.Daryl J. Thomas, Colin N. Dewey, Adam Siepel, Ewan Birney, Damian Keefe, Ariel S. Schwartz, Minmei Hou, James Taylor, Sergey Nikolaev, Juan I. Montoya-Burgos, Ari Loytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, James B. Brown, Peter Bickel, Ian Holmes, James C. Mullikin, Abel Ureta-Vidal, Benedict Paten, Eric A. Stone, Kate R. Rosenbloom, James W. Kent, Gerard G. Bouffard, Xiaobin Guan, Nancy F. Hansen, Jacquelyn R. Idol, Valerie V. Maduro, Baishali Maskeri, Jennifer C. Mcdowell, Morgan Park, Pamela J. Thomas, Alice C. Young, Robert W. Blakesley, Donna M. Muzny, Erica Sodergren, David A. Wheeler, Kim C. Worley, Huaiyang Jiang, George M. Weinstock, Richard A. Gibbs, Tina Graves, Robert Fulton, Elaine R. Mardis, Richard K. Wilson, Michele Clamp, James Cuff, Sante Gnerre, David B. Jaffe, Jean L. Chang, Kerstin Lindblad-Toh, Eric S. Lander, Angie Hinrichs, Heather Trumbower, Hiram Clawson, Ann Zweig, Robert M. Kuhn, Galt Barber, Rachel Harte, Donna Karolchik, Matthew A. Field, Richard A. Moore, Carrie A. Matthewson, Jacqueline E. Schein, Marco A. Marra, Stylianos E. Antonarakis, Serafim Batzoglou, Nick Goldman, Ross Hardison, David Haussler, Webb Miller, Lior Pachter, Eric D. Green, Arend Sidow posted by 17 people daveGerrard BergmanLab polivares timflutre aprasad dpollard dchughes AaronDarling djkt ghattem Garamonfok Bioinformatics EisenLab G4ID Genetics-of-Gambling gjuggler elfar
	An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data [My Copy] Genome Biology, Vol. 8 (11 May 2007), R79. by Michal J. Okoniewski, Tim Yates, Sian Dibben, Crispin J. Miller posted by 4 people idonaldson jfr heliopais bertelsen
	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project [My Copy] Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816. posted by 35 people balajis bertelsen gderwin polivares JLab Eroslavochka timflutre Bioinformatics pengchy raistrick guhjy cmmorel dpollard ilh djkt plofje ramensky joepickrell massivemayhem fishtank Garamonfok jmuhlich bioyang cabbagezs xingxu antonkratz mimulus_99 EisenLab SorgerLab julianjonker gjuggler drbal maralena ep161302 jasonflannick
	The Genetic Signatures of Noncoding RNAs [My Copy] PLoS Genet, Vol. 5, No. 4. (24 April 2009), e1000459. by John S. Mattick posted by 25 people hzoltan Zephyrus antonkratz bertelsen frohike natstreet guhjy gdb giovenko galka8_diploma aditi9783 daforerog ealloza RockmanLab dpollard hrogers coela ilyashl fenghezi reyez maximilianh giovanni djkt Mycology stajich
	ArrayExpress--a public database of microarray experiments and gene expression profiles. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by H. Parkinson, M. Kapushesky, M. Shojatalab, et al.N. Abeygunawardena, R. Coulson, A. Farne, E. Holloway, N. Kolesnykov, P. Lilja, M. Lukk, R. Mani, T. Rayner, A. Sharma, E. William, U. Sarkans, A. Brazma posted by 7 people shikin bertelsen jfr balajis hpiwowar ghattem tvdbulck
	Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5' UTR as in the 3' UTR. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 23. (5 June 2007), pp. 9667-9672. by J. Robin Lytle, Therese A. Yario, Joan A. Steitz posted by 15 people daforerog thegoose2 Glires bertelsen caizhiqiang C. elegans / WormBase tharris guhjy tardigrade andersbj microRNA heliopais oelemento maralena dchughes
	RNA-Seq: a revolutionary tool for transcriptomics [My Copy] Nature Reviews Genetics, Vol. 10, No. 1. (01 January 2009), pp. 57-63. by Zhong Wang, Mark Gerstein, Michael Snyder posted by 45 people bsamal zufar CUBES hongkeun_park ngehlenborg hzoltan sandfire maren jwfoley urgi RNA-protein cthachuk heliopais GustavoLacerda rdiaz TRHvidsten dswan roys woodson8 jonilaserson gdb n00c ThomasDOtto burak natstreet athma druvus tonamswish fishtank daed JohnBallam jmcq dandaman cassj xingxu idonaldson raiyar inesdesantiago vplagnol jbhiatt giovanni orzenil nuin guhjy GeeSharpMinor
	Bioinformatics challenges of new sequencing technology. [My Copy] Trends in genetics : TIG, Vol. 24, No. 3. (11 March 2008), pp. 142-149. by Mihai Pop, Steven L. Salzberg posted by 37 people michaelbarton Jporci cthachuk hzoltan hpaces heliopais imaginatio operon daforerog n00c ptrobajo orzenil APRegier katholt kiekyon thegoose2 xingxu floatingpoint polivares yupu treangen jmcq delenickphd giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam urgi Neeperando jfr tharris mariakmejia caseybrown yoonk druvus
	Microarray data normalization and transformation [My Copy] Nature Genetics, Vol. 32 Suppl (01 December 2002), pp. 496-501. by John Quackenbush posted by 11 people seb1 stharward surajitray daforerog textoris alokm chad_davis schuylrp heliopais frohike bertelsen
	The human disease network. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690. by Kwang-Il I. Goh, Michael E. Cusick, David Valle, Barton Childs, Marc Vidal, Albert-László L. Barabási posted by 51 people icecrown frohike robfsouza bertelsen smichan biomcgary pawelsobko CurAbility Scis0000002 qluo cbforrest Network Analysis of Genes Regulated in Renal Diseases daforerog nedwards Dulcinea saket kaarsinogen roys Yanno guhjy aalibes cannin kuhn jfr yas balicea neveaire bundschu raiyar grahamc joepickrell leSyl henning dejori xingxu winterschlaefer naegele Biostatistics Computational-Genomics Bioinformatics Neuroscience steinmetzlab shoshin ic4 generif_paper shikin nolodie GomezLab mingzhi carlk yaredo
	Impact of RNA degradation on gene expression profiles: assessment of different methods to reliably determine RNA quality. [My Copy] J Biotechnol, Vol. 127, No. 4. (20 January 2007), pp. 549-559. by V. Copois, F. Bibeau, C. Bascoul-Mollevi, et al.N. Salvetat, P. Chalbos, C. Bareil, L. Candeil, C. Fraslon, E. Conseiller, V. Granci, P. Mazière, A. Kramar, M. Ychou, B. Pau, P. Martineau, F. Molina, M. Del Rio posted by 4 people jfr ghattem bertelsen waszak
	Pathways to the analysis of microarray data. [My Copy] Trends in biotechnology, Vol. 23, No. 8. (August 2005), pp. 429-435. by R. Keira Curtis, Matej Oresic, Antonio Vidal-Puig posted by 14 people bertelsen thomaskelder udivi ConklinLab AlexanderPico jfr saman_vp snuppepuppan textoris Ayest tardigrade ealloza BioinfoCIPF heliopais
	A comparison of normalization methods for high density oligonucleotide array data based on variance and bias [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 185-193. by B. M. Bolstad, R. A. Irizarry, M. Astrand, T. P. Speed posted by 25 people frohike lwaldron jperkins vplagnol brianb neils ipark-kaist shikin michaelbarton emptyhb noushin huiminC cassj Dax42 pcahan1 chad_davis RMGraze gjuggler filmsternchen qmwwallace joepickrell ghattem bertelsen vertikalist GeeSharpMinor
	Classification algorithms for phenotype prediction in genomics and proteomics. [My Copy] Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 691-708. by Habtom W. Ressom, Rency S. Varghese, Zhen Zhang, Jianhua Xuan, Robert Clarke posted by 8 people zufar Bioinformatics svozil bertelsen shikin akastrin guhjy giovenko
	Gene-set approach for expression pattern analysis [My Copy] Brief Bioinform, Vol. 9, No. 3. (1 May 2008), pp. 189-197. by Dougu Nam, Seon-Young Kim posted by 20 people frohike bertelsen srp33 tonamswish kemalpak shikin ipark-kaist ihpark ptrobajo guhjy seemu thomaskelder lp2 giovenko AlexanderPico heliopais tmmurali yas beete klo
	TopHat: discovering splice junctions with RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1105-1111. by Cole Trapnell, Lior Pachter, Steven L. Salzberg posted by 30 people idonaldson ongenetics juokcho cthachuk hzoltan jwfoley heliopais dakelley druvus GustavoLacerda stubrown BergmanLab polivares torfinnnome jmcq mtagaya jonilaserson gdb guhjy ThomasDOtto n00c SIMR bioinformatics ghattem xingxu djkt vplagnol bertelsen natstreet idoerg vmsr
	A benchmark for Affymetrix GeneChip expression measures. [My Copy] Bioinformatics, Vol. 20, No. 3. (12 February 2004), pp. 323-331. by L. M. Cope, R. A. Irizarry, H. A. Jaffee, Z. Wu, T. P. Speed posted by 4 people bertelsen heliopais Dax42 ghattem
	arrayQualityMetrics--a bioconductor package for quality assessment of microarray data [My Copy] Bioinformatics, Vol. 25, No. 3. (1 February 2009), pp. 415-416. by Audrey Kauffmann, Robert Gentleman, Wolfgang Huber posted by 18 people jperkins VGreiff Zephyrus daforerog shikin lwaldron jfr ptrobajo rdiaz siebert bertelsen pkonings Bioinformatics dswan renatomilani rschulz nuin guhjy
	Causes and consequences of microRNA dysregulation in cancer [My Copy] Nat Rev Genet, Vol. 10, No. 10. (01 October 2009), pp. 704-714. by Carlo M. Croce posted by 12 people shazo heliopais pattersonee frohike microRNA tonamswish valeriehilgers chrisamiller giovenko megraw ealloza misonneh
	Heritability of alternative splicing in the human genome [My Copy] Genome Res., Vol. 17, No. 8. (1 August 2007), pp. 1210-1218. by Tony Kwan, David Benovoy, Christel Dias, et al.Scott Gurd, David Serre, Harry Zuzan, Tyson A. Clark, Anthony Schweitzer, Michelle K. Staples, Hui Wang, John E. Blume, Thomas J. Hudson, Rob Sladek, Jacek Majewski posted by 12 people dchughes xingxu msomel Bioinformatics G4ID Genetics-of-Gambling caseybrown nicholso jo_davies ramensky popgen guhjy
	Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data [My Copy] BMC Bioinformatics, Vol. 8 (11 June 2007), 194. by Hui Yu, Feng Wang, Kang Tu, Lu Xie, Yuan-Yuan Li, Yi-Xue Li posted by 4 people guhjy jfr heliopais bertelsen
	Comparison of Affymetrix GeneChip expression measures [My Copy] Bioinformatics, Vol. 22, No. 7. (1 April 2006), pp. 789-794. by Rafael A. Irizarry, Zhijin Wu, Harris A. Jaffee posted by 8 people bertelsen zufar heliopais winterschlaefer RMGraze hggr ghattem groepl
	Extensions to gene set enrichment. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 3. (1 February 2007), pp. 306-313. by Zhen Jiang, Robert Gentleman posted by 15 people bertelsen ptrobajo guhjy tonamswish ipark-kaist jfr aviad_work ihpark ealloza djkt BioinfoCIPF waghsk heliopais giovenko magusina
	A second generation human haplotype map of over 3.1 million SNPs. [My Copy] Nature, Vol. 449, No. 7164. (18 October 2007), pp. 851-861. by International HapMap Consortium, Kelly A. Frazer, Dennis G. Ballinger, et al.David R. Cox, David A. Hinds, Laura L. Stuve, Richard A. Gibbs, John W. Belmont, Andrew Boudreau, Paul Hardenbol, Suzanne M. Leal, Shiran Pasternak, David A. Wheeler, Thomas D. Willis, Fuli Yu, Huanming Yang, Changqing Zeng, Yang Gao, Haoran Hu, Weitao Hu, Chaohua Li, Wei Lin, Siqi Liu, Hao Pan, Xiaoli Tang, Jian Wang, Wei Wang, Jun Yu, Bo Zhang, Qingrun Zhang, Hongbin Zhao, Hui Zhao, Jun Zhou, Stacey B. Gabriel, Rachel Barry, Brendan Blumenstiel, Amy Camargo, Matthew Defelice, Maura Faggart, Mary Goyette, Supriya Gupta, Jamie Moore, Huy Nguyen, Robert C. Onofrio, Melissa Parkin, Jessica Roy, Erich Stahl, Ellen Winchester, Liuda Ziaugra, David Altshuler, Yan Shen, Zhijian Yao, Wei Huang, Xun Chu, Yungang He, Li Jin, Yangfan Liu, Yayun Shen, Weiwei Sun, Haifeng Wang, Yi Wang, Ying Wang, Xiaoyan Xiong, Liang Xu, Mary M. Waye, Stephen K. Tsui, Hong Xue, J. Tze-Fei Wong, Luana M. Galver, Jian-Bing B. Fan, Kevin Gunderson, Sarah S. Murray, Arnold R. Oliphant, Mark S. Chee, Alexandre Montpetit, Fanny Chagnon, Vincent Ferretti, Martin Leboeuf, Jean-François F. Olivier, Michael S. Phillips, Stéphanie Roumy, Clémentine Sallée, Andrei Verner, Thomas J. Hudson, Pui-Yan Y. Kwok, Dongmei Cai, Daniel C. Koboldt, Raymond D. Miller, Ludmila Pawlikowska, Patricia Taillon-Miller, Ming Xiao, Lap-Chee C. Tsui, William Mak, You Qiang Q. Song, Paul K. Tam, Yusuke Nakamura, Takahisa Kawaguchi, Takuya Kitamoto, Takashi Morizono, Atsushi Nagashima, Yozo Ohnishi, Akihiro Sekine, Toshihiro Tanaka, Tatsuhiko Tsunoda, Panos Deloukas, Christine P. Bird, Marcos Delgado, Emmanouil T. Dermitzakis, Rhian Gwilliam, Sarah Hunt, Jonathan Morrison, Don Powell, Barbara E. Stranger, Pamela Whittaker, David R. Bentley, Mark J. Daly, Paul I. de Bakker, Jeff Barrett, Yves R. Chretien, Julian Maller, Steve McCarroll, Nick Patterson, Itsik Pe'er, Alkes Price, Shaun Purcell, Daniel J. Richter, Pardis Sabeti, Richa Saxena, Stephen F. Schaffner, Pak C. Sham, Patrick Varilly, David Altshuler, Lincoln D. Stein, Lalitha Krishnan, Albert Vernon V. Smith, Marcela K. Tello-Ruiz, Gudmundur A. Thorisson, Aravinda Chakravarti, Peter E. Chen, David J. Cutler, Carl S. Kashuk, Shin Lin, Gonçalo R. Abecasis, Weihua Guan, Yun Li, Heather M. Munro, Zhaohui Steve S. Qin, Daryl J. Thomas, Gilean McVean, Adam Auton, Leonardo Bottolo, Niall Cardin, Susana Eyheramendy, Colin Freeman, Jonathan Marchini, Simon Myers, Chris Spencer, Matthew Stephens, Peter Donnelly, Lon R. Cardon, Geraldine Clarke, David M. Evans, Andrew P. Morris, Bruce S. Weir, Tatsuhiko Tsunoda, James C. Mullikin, Stephen T. Sherry, Michael Feolo, Andrew Skol, Houcan Zhang, Changqing Zeng, Hui Zhao, Ichiro Matsuda, Yoshimitsu Fukushima, Darryl R. Macer, Eiko Suda, Charles N. Rotimi, Clement A. Adebamowo, Ike Ajayi, Toyin Aniagwu, Patricia A. Marshall, Chibuzor Nkwodimmah, Charmaine D. Royal, Mark F. Leppert, Missy Dixon, Andy Peiffer, Renzong Qiu, Alastair Kent, Kazuto Kato, Norio Niikawa, Isaac F. Adewole, Bartha M. Knoppers, Morris W. Foster, Ellen Wright W. Clayton, Jessica Watkin, Richard A. Gibbs, John W. Belmont, Donna Muzny, Lynne Nazareth, Erica Sodergren, George M. Weinstock, David A. Wheeler, Imtaz Yakub, Stacey B. Gabriel, Robert C. Onofrio, Daniel J. Richter, Liuda Ziaugra, Bruce W. Birren, Mark J. Daly, David Altshuler, Richard K. Wilson, Lucinda L. Fulton, Jane Rogers, John Burton, Nigel P. Carter, Christopher M. Clee, Mark Griffiths, Matthew C. Jones, Kirsten McLay, Robert W. Plumb, Mark T. Ross, Sarah K. Sims, David L. Willey, Zhu Chen, Hua Han, Le Kang, Martin Godbout, John C. Wallenburg, Paul L'Archevêque, Guy Bellemare, Koji Saeki, Hongguang Wang, Daochang An, Hongbo Fu, Qing Li, Zhen Wang, Renwu Wang, Arthur L. Holden, Lisa D. Brooks, Jean E. McEwen, Mark S. Guyer, Vivian Ota O. Wang, Jane L. Peterson, Michael Shi, Jack Spiegel, Lawrence M. Sung, Lynn F. Zacharia, Francis S. Collins, Karen Kennedy, Ruth Jamieson, John Stewart posted by 19 people maren marywaye ilyashl daforerog diamantis Hans45 misonneh psique guhjy dchughes djkt lp2 ryanraaum xingxu Bioinformatics parkinson's disease references jasonflannick skumagai mfm11
	MicroRNA expression profiling of human breast cancer identifies new markers of tumor subtype [My Copy] Genome Biology, Vol. 8, No. 10. (08 October 2007), R214. by Cherie Blenkiron, Leonard Goldstein, Natalie Thorne, et al.Inmaculada Spiteri, Suet F. Chin, Mark Dunning, Nuno B. Morais, Andrew Teschendorff, Andrew Green, Ian Ellis, Simon Tavare, Carlos Caldas, Eric Miska posted by 10 people songpku Zephyrus rdiaz Bioinformatics - CRUK Stew jfr microRNA heliopais ealloza giovenko
	Principles of MicroRNA–Target Recognition [My Copy] PLoS Biol, Vol. 3, No. 3. (15 February 2005), e85. by Julius Brennecke, Alexander Stark, Robert B. Russell, Stephen M. Cohen posted by 16 people marywaye stharward sterovetta kmdaily giovenko rklancer tardigrade andersbj mtagaya cdawson microRNA GIG heliopais tauberj jfr ronnyherc
	Target mimicry provides a new mechanism for regulation of microRNA activity [My Copy] Nature Genetics, Vol. 39, No. 8. (22 July 2007), pp. 1033-1037. by Jose M. Franco-Zorrilla, Adrian Valli, Marco Todesco, et al.Isabel Mateos, Maria I. Puga, Ignacio Rubio-Somoza, Antonio Leyva, Detlef Weigel, Juan A. Garcia, Javier Paz-Ares posted by 11 people danaiancu heliopais andersbj dchughes cabbagezs Bioinformatics microRNA G4ID Genetics-of-Gambling maralena bootsy
	Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. [My Copy] RNA (New York, N.Y.), Vol. 11, No. 3. (March 2005), pp. 241-247. by Scott Baskerville, David P. Bartel posted by 8 people giovenko mtagaya ealloza lp2 microRNA heliopais maralena jfr
	miRBase: tools for microRNA genomics. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. D154-158. by Sam Griffiths-Jones, Harpreet Kaur K. Saini, Stijn van Dongen, Anton J. Enright posted by 13 people hzoltan daed harel_shein heliopais microRNA natstreet daforerog qfwills ealloza giovenko guhjy jfr cabbagezs
	Most mammalian mRNAs are conserved targets of microRNAs [My Copy] Genome Research In Genome Research, Vol. 19, No. 1. (27 January 2009), pp. 92-105. by Robin C. Friedman, Kyle K. Farh, Christopher B. Burge, David P. Bartel posted by 22 people ilyashl danaiancu hzoltan giovenko gbloeb sterovetta gdb guhjy jfr qfwills pengchy druvus felsani microRNA heliopais dchughes valeriehilgers Bioinformatics - CRUK Stew fpattyn MSchipper samgj
	Alternative isoform regulation in human tissue transcriptomes [My Copy] Nature In Nature, Vol. 456, No. 7221. (02 November 2008), pp. 470-476. by Eric T. Wang, Rickard Sandberg, Shujun Luo, et al.Irina Khrebtukova, Lu Zhang, Christine Mayr, Stephen F. Kingsmore, Gary P. Schroth, Christopher B. Burge posted by 25 people cajunsushi hzoltan ajbattle stubrown jonilaserson tonamswish frohike fenghezi heliopais zxmon21 tanglingfung xingxu felsani wimufi Roswell Cancer Crosstalk Zephyrus gjuggler bertelsen eluinka gfliustu vplagnol kieran101 emptyhb rschulz abizar
	From biophysics to evolutionary genetics: statistical aspects of gene regulation. [My Copy] BMC bioinformatics, Vol. 8 Suppl 6 (2007) by Michael Lässig posted by 8 people sockington leemond31 jjray heliopais guhjy shigepong bertelsen bpcusack
	MicroRNA targeting specificity in mammals: determinants beyond seed pairing. [My Copy] Molecular cell, Vol. 27, No. 1. (6 July 2007), pp. 91-105. by Andrew Grimson, Kyle Kai-How K. Farh, Wendy K. Johnston, Philip Garrett-Engele, Lee P. Lim, David P. Bartel posted by 14 people ealloza hcoller fishtank cube_and_beyond provero giovenko jfr andersbj zwang bootsy microRNA heliopais fpattyn maralena
	RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays [My Copy] Genome Research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted by 53 people sotacam CPI UU AndersI zufar cthachuk hzoltan jwfoley heliopais debasis maren mtagaya mkiyer stubrown woodson8 jonilaserson burak Ayest ThomasDOtto SIMR bioinformatics huali n00c natstreet bandrewfox daed dandaman slevy03 pengchy felsani coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich Mycology giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda