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	Automating spoken dialogue management design using machine learning: An industry perspective [My Copy] Speech Commun., Vol. 50, No. 8-9. (2008), pp. 716-729. by Tim Paek, Roberto Pieraccini posted by 2 people ransofodo sWorgan
	Reconstructing gene regulatory networks: from random to scale-free connectivity [My Copy] Systems Biology, IEE Proceedings In Systems Biology, IEE Proceedings, Vol. 153, No. 4. (2006), pp. 247-256. by J. Wildenhain, E. J. Crampin posted by 2 people mjoach sWorgan
	Large-scale inference and graph theoretical analysis of gene-regulatory networks in B. stubtilis [My Copy] (18 Jul 2006) by C. Christensen, A. Gupta, C. D. Maranas, R. Albert posted by 1 person sWorgan
	Beyond Structured Dialogues: Incorporating Clark’s Models of Language Usage [My Copy] by Peter A. Heeman, Michael Johnston posted by 1 person sWorgan
	A Review of the Cocktail Party Effect [My Copy] Journal of the American Voice I/O Society, Vol. 12 (1992), pp. 35-50. by Barry Arons posted by 1 person sWorgan
	Toward the mechanisms of auditory attention. [My Copy] Hearing research, Vol. 229, No. 1-2. (July 2007), pp. 180-185. by T. Hromádka, A. M. Zador posted by 1 person sWorgan
	Sexual Dimorphism, Sexual Selection, and Adaptation in Polygenic Characters [My Copy] Evolution, Vol. 34, No. 2. (1980), pp. 292-305. by Russell Lande posted by 1 person sWorgan
	Body-brain coevolution using L-systems as a generative encoding [My Copy] In In Genetic and Evolutionary Computation Conference (2001), pp. 868-875. by Gregory S. Hornby, Jordan B. Pollack posted by 1 person sWorgan
	Adaptation to Heterogeneous Environments. I. Variation in Heterophylly in Ranunculus flammula L. [My Copy] Evolution, Vol. 22, No. 3. (1968), pp. 496-516. by Stanton A. Cook, Michael P. Johnson posted by 2 people jyuh sWorgan
	Social affordances of computer-mediated communication technology: understanding adoption [My Copy] In CHI '01: CHI '01 extended abstracts on Human factors in computing systems (2001), pp. 67-68. by Erin Bradner posted by 3 people sWorgan floydmueller akuswaraphd
	Varying environments can speed up evolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 34. (21 August 2007), pp. 13711-13716. by Nadav Kashtan, Elad Noor, Uri Alon posted by 15 people Zephyrus druvus Modularity in evolutionary algorithms nemo136 anphony sWorgan rouault mattjb zwang cwr farhat ComplexAdaptiveSystems DSTO-CAS phreeza chrys
	Emergence of Scaling in Random Networks [My Copy] Science, Vol. 286, No. 5439. (15 October 1999), pp. 509-512. by Albert-László Barabási, Réka Albert posted by 52 people asangansi tonyony tessonec leonglester aniakovas nlimam acrmartins bivas makukha melo_mcr thepogoman vmarceau mfuhr tomhebbron eitanla1 voiklis jb44 kinop panisson anphony Adso mattjb phoenixzxl sWorgan czeller alanyang kaarsinogen diamantis pgastrein nolodie qwermish dragonrez shivaram tolosoft balicea ddahlem merazzle Borelli muraken lshaw gurkanbebek jaspervoskuilen rcrane ransombriggs idreams2 nkishan justforscraps Evangelia kb Diego_Prada subhacom ethkim
	Gene regulatory networks and the evolution of animal body plans. [My Copy] Science, Vol. 311, No. 5762. (10 February 2006), pp. 796-800. by E. H. Davidson, D. H. Erwin posted by 26 people mjoach GEB dlobo anphony qwermish sWorgan Lauren_Jones eldan bayesian dpollard xico dchughes brixtonmc Liusha margaritis josepe cjeans sujaikumar Garamonfok jtomasch EisenLab WetBiology G4ID Genetics-of-Gambling Ema natstreet
	Genomic Comparison of Mycobacterium avium subsp. paratuberculosis Sheep and Cattle Strains by Microarray Hybridization [My Copy] J. Bacteriol., Vol. 188, No. 6. (15 March 2006), pp. 2290-2293. by Ian B. Marsh, John P. Bannantine, Michael L. Paustian, Mark L. Tizard, Vivek Kapur, Richard J. Whittington posted by 1 person hillevi
	Rodent-associated bartonella in Saskatchewan, Canada. [My Copy] Vector Borne Zoonotic Dis, Vol. 5, No. 4. (2005), pp. 402-409. by C. Jardine, G. Appleyard, M. Y. Kosoy, et al.D. McColl, M. Chirino-Trejo, G. Wobeser, F. A. Leighton posted by 1 person hillevi
	Essential genes of a minimal bacterium [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 2. (10 January 2006), pp. 425-430. by John I. Glass, Nacyra Assad-Garcia, Nina Alperovich, et al.Shibu Yooseph, Matthew R. Lewis, Mahir Maruf, Clyde A. Hutchison, Hamilton O. Smith, J. Craig Venter posted by 14 people Scis0000002 azazello jwm balicea JKelly555 hillevi famoreira nurban Radiation_Damage Stressosome westoll kevinchannon stringertheory mcox
	Comparative phylogenomics of the food-borne pathogen Campylobacter jejuni reveals genetic markers predictive of infection source [My Copy] PNAS, Vol. 102, No. 44. (1 November 2005), pp. 16043-16048. by Olivia L. Champion, Michael W. Gaunt, Ozan Gundogdu, et al.Abdi Elmi, Adam A. Witney, Jason Hinds, Nick Dorrell, Brendan W. Wren posted by 2 people hillevi carpi
	Gain and Loss of Multiple Genes During the Evolution of Helicobacter pylori. [My Copy] PLoS Genet, Vol. 1, No. 4. (7 October 2005) by Helga Gressmann, Bodo Linz, Rohit Ghai, et al.Klaus-Peter P. Pleissner, Ralph Schlapbach, Yoshio Yamaoka, Christian Kraft, Sebastian Suerbaum, Thomas F F. Meyer, Mark Achtman posted by 1 person hillevi
	Role of bacteriophage DNA replication in lambda-dg escape synthesis. [My Copy] J Mol Biol, Vol. 32, No. 1. (28 February 1968), pp. 37-46. by M. Willard, H. Echols posted by 1 person hillevi
	Regional replication of the bacterial chromosome induced by derepression of prophage lambda. IV. Escape synthesis of gal operon in phage 82. [My Copy] Mol Gen Genet, Vol. 167, No. 1. (16 November 1978), pp. 83-93. by T. Fukasawa, K. Hirai, T. Segawa, K. Obonai posted by 1 person hillevi
	Host Gene Expression Changes and DNA Amplification during Temperate Phage Induction [My Copy] J. Bacteriol., Vol. 187, No. 4. (15 February 2005), pp. 1485-1492. by Jonathan G. Frye, Steffen Porwollik, Felisa Blackmer, Pui Cheng, Michael Mcclelland posted by 1 person hillevi
	CloudBurst: highly sensitive read mapping with MapReduce [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1363-1369. by Michael C. Schatz posted by 36 people joshdsullivan cthachuk hzoltan jfr walshtp idonaldson orzenil heliopais dakelley bozdagd agbiotec jandot guhjy n00c cymacs semrich nuin operon AlexBateman fgibson KCL & UCL Bioinformatics rschulz Bioinformatics dswan mitko djkt humburg jmeppley coela vagoskar svenrahmann natstreet brianb Neeperando druvus neils
	A Fine-Structure Map of Spontaneous Mitotic Crossovers in the Yeast <italic>Saccharomyces cerevisiae</italic> [My Copy] PLoS Genet, Vol. 5, No. 3. (13 March 2009), e1000410. by Phoebe S. Lee, Patricia W. Greenwell, Margaret Dominska, Malgorzata Gawel, Monica Hamilton, Thomas D. Petes posted by 2 people semrich jasontsai
	Harnessing genomics for evolutionary insights. [My Copy] Trends in ecology & evolution (Personal edition), Vol. 24, No. 4. (6 April 2009), pp. 192-200. by Antonis Rokas, Patrick Abbot posted by 9 people hardje biomcgary GustavoLacerda jlin robsyme druvus dchughes semrich inquil
	CNV-seq, a new method to detect copy number variation using high-throughput sequencing [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 80. by Chao Xie, Martti Tammi posted by 23 people druvus orzenil humburg hzoltan biovils stubrown cthachuk GustavoLacerda n00c darian bmenten natstreet sameersoi svenrahmann xiechao semrich pkonings rdiaz dswan Bioinformatics sleepingcell neils magusina
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven Salzberg posted by 44 people oannes mijam nuin jfr hzoltan cthachuk darshan fstrozzi adijr debasis bozdagd BergmanLab polivares torfinnnome n00c talponer jmcq rschulz SIMR bioinformatics ghattem operon humburg idonaldson mmartin iSEEM skembel dquest heliopais djkt GeeSharpMinor bertelsen darian Notre Dame Bioinformatics semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus
	Systems genetics of complex traits in Drosophila melanogaster [My Copy] Nature Genetics, Vol. 41, No. 3. (22 February 2009), pp. 299-307. by Julien F. Ayroles, Mary A. Carbone, Eric A. Stone, et al.Katherine W. Jordan, Richard F. Lyman, Michael M. Magwire, Stephanie M. Rollmann, Laura H. Duncan, Faye Lawrence, Robert R. H. Anholt, Trudy F. C. Mackay posted by 19 people vingron BergmanLab daveGerrard ongenetics timflutre FuncGen thokall bernadettgaal RockmanLab dpollard semrich roys rdiaz fenghezi emptyhb bertrandservin daforerog provero djkt
	Multiple whole-genome alignments without a reference organism [My Copy] Genome Research, Vol. 19, No. 4. (28 April 2009), pp. 682-689. by Inna Dubchak, Alexander Poliakov, Andrey Kislyuk, Michael Brudno posted by 14 people fernan fstrozzi GustavoLacerda michaelbarton mlangill dakelley xwbcn Neeperando zwang nyyu djkt semrich azazello mhamada
	SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses [My Copy] Bioinformatics (6 January 2009), btp011. by Michael S. Barker, Katrina M. Dlugosch, Reddy, Sarah N. Amyotte, Loren H. Rieseberg posted by 6 people semrich jmeppley druvus felsani jasontsai djkt
	Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment [My Copy] Bioinformatics (4 December 2008), btn630. by Benedict Paten, Javier Herrero, Kathryn Beal, Ewan Birney posted by 10 people BioNica guhjy dakelley semrich gjuggler djkt rschulz birney operon druvus
	Sequencing of natural strains of Arabidopsis thaliana with short reads. [My Copy] Genome research, Vol. 18, No. 12. (29 December 2008), pp. 2024-2033. by Stephan Ossowski, Korbinian Schneeberger, Richard M. Clark, Christa Lanz, Norman Warthmann, Detlef Weigel posted by 14 people seninp n00c APRegier sameersoi dandaman jasontsai Mycology stajich xwbcn natstreet druvus GustavoLacerda Notre Dame Bioinformatics semrich
	Unraveling ancient hexaploidy through multiply aligned angiosperm gene maps. [My Copy] Genome research (3 November 2008) by Haibao Tang, Xiyin Wang, John E E. Bowers, Ray Ming, Maqsudul Alam, Andrew H H. Paterson posted by 3 people natstreet dandaman semrich
	Analysis of the Pythium ultimum transcriptome using Sanger and Pyrosequencing approaches [My Copy] BMC Genomics, Vol. 9 (15 November 2008), 542. by Foo, Robin C. Buell posted by 2 people semrich pengchy
	Network hubs buffer environmental variation in Saccharomyces cerevisiae. [My Copy] PLoS biology, Vol. 6, No. 11. (4 November 2008), e264. by Sasha F. Levy, Mark L. Siegal posted by 7 people biomcgary semrich emptyhb benjaminsb bpcusack grahamc caseybrown
	Regulatory Hotspots in the Malaria Parasite Genome Dictate Transcriptional Variation [My Copy] PLoS Biology, Vol. 6, No. 9. (1 September 2008), e238. by Joseph M. Gonzales, Jigar J. Patel, Napawan Ponmee, et al.Lei Jiang, Asako Tan, Steven P. Maher, Stefan Wuchty, Pradipsinh K. Rathod, Michael T. Ferdig posted by 4 people arider1 semrich caseybrown djkt
	Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads [My Copy] PLoS Comput Biol In PLoS Comput Biol, Vol. 4, No. 9. (26 September 2008), e1000186. by Steven L. Salzberg, Daniel D. Sommer, Daniela Puiu, Vincent T. Lee posted by 23 people skembel n00c operon BergmanLab michaelbarton azazello Thaverkamp dakelley sconlan GustavoLacerda treangen natstreet antonkratz druvus Papers recommended by the Roscoff Plankton Group vaulot iSEEM djkt microbiology_nijmegen Katje Mycology stajich semrich
	DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications. [My Copy] Journal of computational biology : a journal of computational molecular cell biology (6 September 2008) by Jian Ma, Aakrosh Ratan, Brian J J. Raney, et al.Bernard B B. Suh, Louxin Zhang, Webb Miller, David Haussler posted by 2 people druvus semrich
	RB-Finder: An Improved Distance-Based Sliding Window Method to Detect Recombination Breakpoints. [My Copy] Journal of computational biology : a journal of computational molecular cell biology (17 August 2008) by Wah-Heng H. Lee, Wing-Kin K. Sung posted by 1 person semrich
	Discovering regulatory motifs in the Plasmodium genome using comparative genomics [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 24, No. 17. (1 September 2008), pp. 1843-1849. by Jie Wu, Douglas H. Sieglaff, Joshua Gervin, Xiaohui S. Xie posted by 6 people idonaldson xili03 APRegier semrich Neeperando neils
	Evolution of Evolvability in Gene Regulatory Networks [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000112. by Anton Crombach, Paulien Hogeweg posted by 20 people tomhebbron roys mjoach semrich wangbo kaarsinogen renatomilani aramesh2 erel10 Ema jdiezperezj bootsy dlobo GEB Stew djkt dquest shoshin rebeccamancy Borelli
	High-resolution mapping of meiotic crossovers and non-crossovers in yeast. [My Copy] Nature, Vol. 454, No. 7203. (24 July 2008), pp. 479-485. by Eugenio Mancera, Richard Bourgon, Alessandro Brozzi, Wolfgang Huber, Lars M. Steinmetz posted by 10 people semrich abrozzi waszak Hans45 raiyar caseybrown djkt bpcusack jasontsai madhadron
	Consensus generation and variant detection by Celera Assembler [My Copy] Bioinformatics In Bioinformatics, Vol. 24, No. 8. (15 April 2008), pp. 1035-1040. by Gennady Denisov, Brian Walenz, Aaron L. Halpern, et al.Jason Miller, Nelson Axelrod, Samuel Levy, Granger Sutton posted by 8 people darian n00c dakelley orzenil natstreet druvus nmohelli semrich
	High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Evandro Novaes, Derek Drost, William Farmerie, et al.Georgios Pappas, Dario Grattapaglia, Ronald Sederoff, Matias Kirst posted by 6 people Notre Dame Bioinformatics semrich natstreet gpappas GustavoLacerda neils
	The Airborne Metagenome in an Indoor Urban Environment [My Copy] PLoS ONE, Vol. 3, No. 4. (2 April 2008), e1862. by Susannah G. Tringe, Tao Zhang, Xuguo Liu, et al.Yiting Yu, Wah H. Lee, Jennifer Yap, Fei Yao, Sim T. Suan, Seah K. Ing, Matthew Haynes, Forest Rohwer, Chia L. Wei, Patrick Tan, James Bristow, Edward M. Rubin, Yijun Ruan posted by 5 people skembel vmedina09 semrich djkt iSEEM
	Get the most out of your metagenome: computational analysis of environmental sequence data [My Copy] Current Opinion in Microbiology, Vol. 10, No. 5. (October 2007), pp. 490-498. by Jeroen Raes, Konrad U. Foerstner, Peer Bork posted by 8 people ajsferreira Orengo Group Journal Picks CorinYeats dakelley idoerg Pascalichouchou druvus iSEEM
	A Plasmodium whole-genome synteny map: indels and synteny breakpoints as foci for species-specific genes. [My Copy] PLoS pathogens, Vol. 1, No. 4. (December 2005) by T. W. Kooij, J. M. Carlton, S. L. Bidwell, et al.N. Hall, J. Ramesar, C. J. Janse, A. P. Waters posted by 2 people druvus semrich
	RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays [My Copy] Genome Research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted by 53 people sotacam CPI UU AndersI zufar cthachuk hzoltan jwfoley heliopais debasis maren mtagaya mkiyer stubrown woodson8 jonilaserson burak Ayest ThomasDOtto SIMR bioinformatics huali n00c natstreet bandrewfox daed dandaman slevy03 pengchy felsani coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich Mycology giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda
	Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. [My Copy] Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1239-1243. by Brian T. Wilhelm, Samuel Marguerat, Stephen Watt, et al.Falk Schubert, Valerie Wood, Ian Goodhead, Christopher J. Penkett, Jane Rogers, Jürg Bähler posted by 16 people hzoltan manduca jmcq natstreet n00c TRHvidsten poschm michaelbarton caseybrown myourshaw djkt jonathanjacobs Molecular Biology GeeSharpMinor guhjy semrich
	Mapping the Genetic Architecture of Gene Expression in Human Liver [My Copy] PLoS Biol, Vol. 6, No. 5. (6 May 2008), e107. by Eric E. Schadt, Cliona Molony, Eugene Chudin, et al.Ke Hao, Xia Yang, Pek Y. Lum, Andrew Kasarskis, Bin Zhang, Susanna Wang, Christine Suver, Jun Zhu, Joshua Millstein, Solveig Sieberts, John Lamb, Debraj GuhaThakurta, Jonathan Derry, John D. Storey, Iliana Avila-Campillo, Mark J. Kruger, Jason M. Johnson, Carol A. Rohl, Atila van Nas, Margarete Mehrabian, Thomas A. Drake, Aldons J. Lusis, Ryan C. Smith, F. Peter Guengerich, Stephen C. Strom, Erin Schuetz, Thomas H. Rushmore, Roger Ulrich posted by 17 people kshameer CameronNeylon nicholso greg roys Borelli athma lawraga semrich ddunbar caseybrown vplagnol Schmidtc ptrobajo Jonesy guhjy hdopazo
	Synteny and Collinearity in Plant Genomes [My Copy] Science, Vol. 320, No. 5875. (25 April 2008), pp. 486-488. by Haibao Tang, John E. Bowers, Xiyin Wang, Ray Ming, Maqsudul Alam, Andrew H. Paterson posted by 8 people echinotrix semrich natstreet tanghaibao biomcgary ArtemPankin Khavkin's lab bpcusack
	A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. [My Copy] PLoS ONE, Vol. 2, No. 12. (2007) by R. Velasco, A. Zharkikh, M. Troggio, et al.D. A. Cartwright, A. Cestaro, D. Pruss, M. Pindo, L. M. Fitzgerald, S. Vezzulli, J. Reid, G. Malacarne, D. Iliev, G. Coppola, B. Wardell, D. Micheletti, T. Macalma, M. Facci, J. T. Mitchell, M. Perazzolli, G. Eldredge, P. Gatto, R. Oyzerski, M. Moretto, N. Gutin, M. Stefanini, Y. Chen, C. Segala, C. Davenport, L. Demattè, A. Mraz, J. Battilana, K. Stormo, F. Costa, Q. Tao, A. Si-Ammour, T. Harkins, A. Lackey, C. Perbost, B. Taillon, A. Stella, V. Solovyev, J. A. Fawcett, L. Sterck, K. Vandepoele, S. M. Grando, S. Toppo, C. Moser, J. Lanchbury, R. Bogden, M. Skolnick, V. Sgaramella, S. K. Bhatnagar, P. Fontana, A. Gutin, Y. Van de Peer, F. Salamini, R. Viola posted by 3 people druvus semrich natstreet
	Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing [My Copy] Molecular Ecology, Vol. 17, No. 7. (April 2008), pp. 1636-1647. by J. Cristobal Vera, Christopher W. Wheat, Howard W. Fescemyer, et al.Mikko J. Frilander, Douglas L. Crawford, I. Ilkka Hansk, James H. Marden posted by 6 people n00c sujaikumar oneilsh semrich orzenil guhjy
	Variations in DNA elucidate molecular networks that cause disease. [My Copy] Nature, Vol. 452, No. 7186. (27 March 2008), pp. 429-435. by Yanqing Chen, Jun Zhu, Pek Yee Y. Lum, et al.Xia Yang, Shirly Pinto, Douglas J. MacNeil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K. Sieberts, Amy Leonardson, Lawrence W. Castellini, Susanna Wang, Marie-France F. Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A. Drake, Aldons J. Lusis, Eric E. Schadt posted by 25 people mnishimu Zephyrus biomcgary daforerog roys druvus 4th_floor_JC nicklynch semrich brianb jbsaltz djkt raiyar lp2 jo_davies shikin caseybrown GeneGo ptrobajo guhjy echinotrix natstreet sanchezbuelna jfr chrisamiller
	Whole-genome sequencing and variant discovery in C. elegans. [My Copy] Nature methods, Vol. 5, No. 2. (20 February 2008), pp. 183-188. by LaDeana W. Hillier, Gabor T. Marth, Aaron R. Quinlan, et al.David Dooling, Ginger Fewell, Derek Barnett, Paul Fox, Jarret I. Glasscock, Matthew Hickenbotham, Weichun Huang, Vincent J. Magrini, Ryan J. Richt, Sacha N. Sander, Donald A. Stewart, Michael Stromberg, Eric F. Tsung, Todd Wylie, Tim Schedl, Richard K. Wilson, Elaine R. Mardis posted by 15 people seninp Annab n00c APRegier thegoose2 druvus semrich AaronDarling usagi-kirin matthewsuderman inesdesantiago orzenil mdimon farhat tharris
	Genetic differentiation across a latitudinal gradient in two co-occurring butterfly species: revealing population differences in a context of climate change [My Copy] Molecular Ecology, Vol. 17, No. 1. (January 2008), pp. 189-208. by Evgueni V. Zakharov, Jessica J. Hellmann posted by 1 person semrich
	Distinct physiological states of Plasmodium falciparum in malaria-infected patients. [My Copy] Nature, Vol. 450, No. 7172. (13 December 2007), pp. 1091-1095. by J. P. Daily, D. Scanfeld, N. Pochet, et al.K. Le Roch, D. Plouffe, M. Kamal, O. Sarr, S. Mboup, O. Ndir, D. Wypij, K. Levasseur, E. Thomas, P. Tamayo, C. Dong, Y. Zhou, E. S. Lander, D. Ndiaye, D. Wirth, E. A. Winzeler, J. P. Mesirov, A. Regev posted by 5 people chica semrich tmmurali aswin shuzhens
	Increasing the Power to Detect Causal Associations by Combining Genotypic and Expression Data in Segregating Populations [My Copy] PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e69. by Jun Zhu, Matthew C. Wiener, Chunsheng Zhang, et al.Arthur Fridman, Eric Minch, Pek Y. Lum, Jeffrey R. Sachs, Eric E. Schadt posted by 9 people roys nicholso brianb jfr hms jo_davies semrich tmmurali beete
	Comparison of C. elegans and C. briggsae Genome Sequences Reveals Extensive Conservation of Chromosome Organization and Synteny [My Copy] PLoS Biology, Vol. 5, No. 7. (1 July 2007), e167. by Ladeana W. Hillier, Raymond D. Miller, Scott E. Baird, et al.Asif Chinwalla, Lucinda A. Fulton, Daniel C. Koboldt, Robert H. Waterston posted by 7 people thegoose2 C. elegans / WormBase tharris cabbagezs asddd tjmorgan semrich
	Gene discovery and annotation using LCM-454 transcriptome sequencing. [My Copy] Genome Res, Vol. 17, No. 1. (January 2007), pp. 69-73. by S. J. Emrich, W. B. Barbazuk, L. Li, P. S. Schnable posted by 9 people hpaces malcook orzenil guhjy operon plofje usagi-kirin ghattem semrich
	Topology and weights in a protein domain interaction network--a novel way to predict protein interactions. [My Copy] BMC Genomics, Vol. 7 (2006) by S. Wuchty posted by 3 people semrich choonpeng iris_2001
	Integrating Genetic and Network Analysis to Characterize Genes Related to Mouse Weight [My Copy] PLoS Genet, Vol. 2, No. 8. (18 August 2006), e130. by Anatole Ghazalpour, Sudheer Doss, Bin Zhang, et al.Susanna Wang, Christopher Plaisier, Ruth Castellanos, Alec Brozell, Eric E. Schadt, Thomas A. Drake, Aldons J. Lusis, Steve Horvath posted by 13 people biomcgary Scis0000002 cswinburne druvus semrich Maelys kengg koller giovanni jeremymiller natstreet jo_davies GeschwindLab
	Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 20. (30 September 2003), pp. 11484-11489. by W. James Kent, Robert Baertsch, Angie Hinrichs, Webb Miller, David Haussler posted by 14 people gdb daveGerrard ilyashl BergmanLab hrogers semrich polivares bryankr pcahan1 djkt gjuggler nuin Auger Dead 60's
	Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements [My Copy] Genome Research, Vol. 14, No. 7. (July 2004), pp. 1394-1403. by Aaron C. E. Darling, Bob Mau, Frederick R. Blattner, Nicole T. Perna posted by 16 people rneches foxpowa APRegier Khavkin's lab ArtemPankin hpaces Neeperando bcondon semrich operon catmat AaronDarling azazello gatech-compgenomics mariakmejia druvus
	Evolutionary capacitance as a general feature of complex gene networks. [My Copy] Nature, Vol. 424, No. 6948. (31 July 2003), pp. 549-552. by Aviv Bergman, Mark L. Siegal posted by 9 people dbikard antonkratz tictacgo semrich emptyhb hisashim cambray rklancer pat
	Nearly Neutrality and the Evolution of Codon Usage Bias in Eukaryotic Genomes [My Copy] Genetics, Vol. 178, No. 4. (1 April 2008), pp. 2429-2432. by Sankar Subramanian posted by 2 people codonusage michaelbarton
	A New Test for Selection Applied to Codon Usage in Drosophila simulans and D. mauritiana. [My Copy] Journal of molecular evolution (21 February 2008) by Ana Llopart, Aelén Mabillé, Jennifer R. Peters-Hall, Josep M. Comeron, Richard M. Kliman posted by 2 people codonusage operon
	Selection on codon usage in Drosophila americana. [My Copy] Current biology : CB, Vol. 14, No. 2. (20 January 2004), pp. 150-154. by X. Maside, A. W. Lee, B. Charlesworth posted by 2 people codonusage operon
	G+C3 Structuring Along the Genome: A Common Feature in Prokaryotes [My Copy] Mol Biol Evol, Vol. 20, No. 4. (1 April 2003), pp. 471-483. by Vincent Daubin, Guy Perriere posted by 2 people codonusage operon
	Large scale comparative codon-pair context analysis unveils general rules that fine-tune evolution of mRNA primary structure. [My Copy] PLoS ONE, Vol. 2, No. 9. (2007) by G. Moura, M. Pinheiro, J. Arrais, et al.A. C. Gomes, L. Carreto, A. Freitas, J. L. Oliveira, M. A. Santos posted by 2 people codonusage operon
	The Mystery of Two Straight Lines in Bacterial Genome Statistics [My Copy] Bulletin of Mathematical Biology, Vol. 69, No. 7. (14 October 2007), pp. 2429-2442. by A. Gorban, A. Zinovyev posted by 2 people codonusage operon
	Calibrating bacterial evolution [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 22. (26 October 1999), pp. 12638-12643. by Howard Ochman, Susannah Elwyn, Nancy A. Moran posted by 2 people codonusage operon
	Mutation-Selection Models of Codon Substitution and Their Use to Estimate Selective Strengths on Codon Usage. [My Copy] Mol Biol Evol (3 January 2008) by Ziheng Yang, Rasmus Nielsen posted by 6 people operon BioNica stajich cjeans gjuggler Mycology
	The selection-mutation-drift theory of synonymous codon usage. [My Copy] Genetics, Vol. 129, No. 3. (1 November 1991), pp. 897-907. by M. Bulmer posted by 3 people codonusage emptyhb allmaya
	Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes [My Copy] BMC Evolutionary Biology, Vol. 4, No. 1. (2004) by Xiu F. Wan, Dong Xu, Andris Kleinhofs, Jizhong Zhou posted by 4 people saunders codonusage operon msafi
	Synonymous codon usage in Escherichia coli: selection for translational accuracy. [My Copy] Mol Biol Evol, Vol. 24, No. 2. (February 2007), pp. 374-381. by N. Stoletzki, A. Eyre-Walker posted by 1 person codonusage
	Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species. [My Copy] Genome Biol, Vol. 7 (2006) by M. Mitreva, M. C. Wendl, J. Martin, et al.T. Wylie, Y. Yin, A. Larson, J. Parkinson, R. H. Waterston, J. P. Mccarter posted by 4 people codonusage thegoose2 C. elegans / WormBase tharris
	Phylogenetic Inference Using Whole Genomes [My Copy] Annual Review of Genomics and Human Genetics, Vol. 9, No. 1. (2008), pp. 217-231. by Bruce Rannala, Ziheng Yang posted by 12 people codonusage katholt friendpine inquil gwallau LabDros operon treangen druvus aprasad gjuggler zwang
	Genome Landscapes and Bacteriophage Codon Usage [My Copy] PLoS Comput Biol, Vol. 4, No. 2. (29 February 2008), e1000001. by Julius B. Lucks, David R. Nelson, Grzegorz R. Kudla, Joshua B. Plotkin posted by 3 people coela codonusage bpcusack
	Studies on the Origin and Evolution of Codon Bias [My Copy] (24 Jul 2008) by Jan C. Biro posted by 1 person codonusage
	Concerted evolution between duplicated genetic elements in Helicobacter pylori1 [My Copy] Journal of Molecular Biology, Vol. 316, No. 3. (22 February 2002), pp. 629-642. by David T. Pride, Martin J. Blaser posted by 2 people codonusage xingxu
	An extensive study of mutation and selection on the wobble nucleotide in tRNA anticodons in fungal mitochondrial genomes. [My Copy] Journal of molecular evolution, Vol. 66, No. 5. (May 2008), pp. 484-493. by Malisa Carullo, Xuhua Xia posted by 1 person codonusage
	Decline in excision circles requires homeostatic renewal or homeostatic death of naive T cells. [My Copy] Journal of theoretical biology, Vol. 224, No. 3. (7 October 2003), pp. 351-358. by Bas E. Dutilh, Rob J. de Boer
	A global definition of expression context is conserved between orthologs, but does not correlate with sequence conservation. [My Copy] BMC genomics, Vol. 7 (2006) by Bas E. Dutilh, Martijn A. Huynen, Berend Snel
	Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2878-2881. by Bas E. Dutilh, Martijn A. Huynen, Marc Strous posted by 11 people CorinYeats skennedy8 dakelley druvus kinestetika ThomasDOtto jasontsai skembel iSEEM sharpton jmeppley
	Macronuclear genome structure of the ciliate Nyctotherus ovalis: single-gene chromosomes and tiny introns. [My Copy] BMC genomics, Vol. 9 (05 December 2008), 587. by Guénola Ricard, Rob M. de Graaf, Bas E. Dutilh, et al.I. Duarte, Theo A. van Alen, Angela Ham H. van Hoek, Brigitte Boxma, Georg W. van der Staay, Seung Yeo Y. Moon-van der Staay, Wei-Jen J. Chang, Laura F. Landweber, Johannes H. Hackstein, Martijn A. Huynen
	Signature, a web server for taxonomic characterization of sequence samples using signature genes. [My Copy] Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008) by Bas E. Dutilh, Ying He, Maarten L. Hekkelman, Martijn A. Huynen posted by 4 people skembel mjetten anammox microbiology_nijmegen
	Signature Genes as a Phylogenomic Tool. [My Copy] Molecular biology and evolution (19 May 2008) by Bas E E. Dutilh, Berend Snel, Thijs J G J. Ettema, Martijn A A. Huynen posted by 6 people sriesenfeld iSEEM skembel mjetten anammox microbiology_nijmegen
	Conservation of divergent transcription in fungi [My Copy] Trends in Genetics, Vol. 24, No. 5. (May 2008), pp. 207-211. by Philip R. Kensche, Martin Oti, Bas E. Dutilh, Martijn A. Huynen posted by 4 people GustavoLacerda stajich Mycology nklee
	The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise. [My Copy] J Mol Evol, Vol. 58, No. 5. (May 2004), pp. 527-539. by B. E. Dutilh, M. A. Huynen, W. J. Bruno, B. Snel posted by 4 people LabDros operon kinestetika microbiology_nijmegen
	Development of the first marmoset-specific DNA microarray (EUMAMA): a new genetic tool for large-scale expression profiling in a non-human primate. [My Copy] BMC genomics, Vol. 8 (25 June 2007), 190. by Nicole A. Datson, Maarten C. Morsink, Srebrena Atanasova, et al.Victor W. Armstrong, Hans Zischler, Christina Schlumbohm, Bas E. Dutilh, Martijn A. Huynen, Brigitte Waegele, Andreas Ruepp, E. Ronald de Kloet, Eberhard Fuchs
	Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution. [My Copy] Journal of the Royal Society, Interface / the Royal Society, Vol. 5, No. 19. (6 February 2008), pp. 151-170. by Philip R. Kensche, Vera van Noort, Bas E. Dutilh, Martijn A. Huynen posted by 2 people kiekyon cdallett
	Assessment of phylogenomic and orthology approaches for phylogenetic inference [My Copy] Bioinformatics, Vol. 23, No. 7. (1 April 2007), pp. 815-824. by B. E. Dutilh, V. van Noort, R. T. J. M. van der Heijden, T. Boekhout, B. Snel, M. A. Huynen posted by 5 people calderonv iSEEM skembel maximilianh svdate
	Deciphering the evolution and metabolism of an anammox bacterium from a community genome. [My Copy] Nature, Vol. 440, No. 7085. (6 April 2006), pp. 790-794. by Marc Strous, Eric Pelletier, Sophie Mangenot, et al.Thomas Rattei, Angelika Lehner, Michael W. Taylor, Matthias Horn, Holger Daims, Delphine Bartol-Mavel, Patrick Wincker, Valérie Barbe, Nuria Fonknechten, David Vallenet, Béatrice Segurens, Chantal Schenowitz-Truong, Claudine Médigue, Astrid Collingro, Berend Snel, Bas E. Dutilh, Huub J. Op den Camp, Chris van der Drift, Irina Cirpus, Katinka T. van de Pas-Schoonen, Harry R. Harhangi, Laura van Niftrik, Markus Schmid, Jan Keltjens, Jack van de Vossenberg, Boran Kartal, Harald Meier, Dmitrij Frishman, Martijn A. Huynen, Hans-Werner W. Mewes, Jean Weissenbach, Mike S. Jetten, Michael Wagner, Denis Le Paslier posted by 8 people kinestetika azazello anammox microbiology_nijmegen vrich jlgreen Green Lab iSEEM
	GENOME TREES AND THE NATURE OF GENOME EVOLUTION [My Copy] Annual Review of Microbiology, Vol. 59, No. 1. (2005), pp. 191-209. by Berend Snel, Martijn A. Huynen, Bas E. Dutilh posted by 6 people pablocarb inquil ssgong knaseanka aprasad dayjm
	Genome evolution and adaptation in a long-term experiment with Escherichia coli [My Copy] Nature, Vol. 461, No. 7268. (18 October 2009), pp. 1243-1247. by Jeffrey E. Barrick, Dong S. Yu, Sung H. Yoon, et al.Haeyoung Jeong, Tae K. Oh, Dominique Schneider, Richard E. Lenski, Jihyun F. Kim posted by 40 people psique TorstenWaldminghaus aprasad gjuggler pmalkus ronbun_2009au dokky samubernard ilyashl biomcgary kintoki zwang jasontsai Pedro Martinez EvoDevo lab Barcelona aaltenburger sawasthi nurban josepe tjandra venancio maren qayub Garamonfok yyfwuhan Asclepius dbikard nzm jjray iSEEM djkt treangen Journal picks lp2 operon diamantis BergmanLab michaelbarton druvus DrRichardBadge richardfranzese
	Gene Conversion Drives Within Genic Sequences: Concerted Evolution of Ribosomal RNA Genes in Bacteria and Archaea [My Copy] Journal of Molecular Evolution, Vol. 51, No. 4. (24 October 2000), pp. 305-317. by Daiqing Liao posted by 1 person codonusage
	Gene conversion and concerted evolution in bacterial genomes⋆ [My Copy] FEMS Microbiology Reviews, Vol. 29, No. 2. (2005), pp. 169-183. by Gustavo Santoyo, David Romero posted by 1 person codonusage
	Computer simulation of tRNA evolution [My Copy] Journal of Physics A: Mathematical and Theoretical, Vol. 42, No. 34. (2009), 345101. by Fangping Wei, Sheng Li, H. R. Ma posted by 1 person codonusage
	Stochastic Mapping of Morphological Characters [My Copy] Syst Biol, Vol. 52, No. 2. (1 April 2003), pp. 131-158. by John P. Huelsenbeck, Rasmus Nielsen, Jonathan P. Bollback posted by 1 person codonusage
	SIMMAP: Stochastic character mapping of discrete traits on phylogenies [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006), 88. by Jonathan Bollback posted by 1 person codonusage