Ana P C Rodrigues's Top Recommendations

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	Allosteric determinants in guanine nucleotide-binding proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 24. (25 November 2003), pp. 14445-14450. by M. E. Hatley, S. W. Lockless, S. K. Gibson, A. G. Gilman, R. Ranganathan posted by 11 people qluo barry lna Einat marcius caporaso structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF
	Structure, function, and evolution of transient and obligate proteinâprotein interactions [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 31. (2 August 2005), pp. 10930-10935. by Julian Mintseris, Zhiping Weng posted by 16 people dfdong timg mgomes barry bjorns wiehe julianm bicko chad_davis cjeans structural_bioinformatics ZLAB Bioinformatics Evangelia marti higueruelo
	iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 3. (1 February 2005), pp. 410-412. by Robert D. Finn, Mhairi Marshall, Alex Bateman posted by 12 people dfdong kiekyon kshameer mdimmic barry chad_davis choonpeng massivemayhem antonkratz structural_bioinformatics Bioinformatics kintoki
	Improved side-chain modeling for protein-protein docking. [My Copy] Protein Sci, Vol. 14, No. 5. (May 2005), pp. 1328-1339. by C. Wang, O. Schueler-Furman, D. Baker posted by 15 people dgront csrocha barry aqeel jwm bicko yongzhao blackbart bluvsh1 hmk selrac structural_bioinformatics Bioinformatics TSRI_MGL Evangelia
	Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins. [My Copy] J Mol Biol, Vol. 307, No. 5. (13 April 2001), pp. 1487-1502. by R. Landgraf, I. Xenarios, D. Eisenberg posted by 11 people dfdong ramiro2k barry pansapiens sriram_s cjeans structural_bioinformatics Bioinformatics mingzhi Pao-Yang marti
	Statistical analysis and prediction of protein-protein interfaces [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 60, No. 3. (19 May 2005), pp. 353-366. by Andrew J. Bordner, Ruben Abagyan posted by 11 people dfdong boris_aguilar barry bicko lyongu ameetsoni cjeans structural_bioinformatics Bioinformatics Evangelia marti
	Simultaneous determination of protein structure and dynamics [My Copy] Nature, Vol. 433, No. 7022. (13 January 2005), pp. 128-132. by Kresten Lindorff-Larsen, Robert B. Best, Mark A. Depristo, Christopher M. Dobson, Michele Vendruscolo posted by 19 people Diego_Prada xdeupi Structural Biology Group TorVergata A_Coletta_Thesis karbak apaydin barry lillekatt baaden lna dgront allmensch daevans rsantana jlh64 structural_bioinformatics Bioinformatics biehl rph
	Ultraconserved Elements in the Human Genome [My Copy] Science, Vol. 304, No. 5675. (28 May 2004), pp. 1321-1325. by Gill Bejerano, Michael Pheasant, Igor Makunin, et al.Stuart Stephen, W. James Kent, John S. Mattick, David Haussler posted by 24 people clearbluespring daforerog ilyashl treangen Ema karbak barry ujh alexisgallagher bpb aprasad balicea dchughes pradiptaray djkt sujaikumar structural_bioinformatics Bioinformatics G4ID Genetics-of-Gambling blobbybirdman cisevol cis-regulatory-evolution fpattyn
	Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. [My Copy] Acta crystallographica. Section D, Biological crystallography, Vol. 60, No. Pt 12 Pt 1. (01 December 2004), pp. 2256-2268. by E. Krissinel, K. Henrick posted by 9 people parnell barry jwm analogAI robert structural_bioinformatics Radiation_Damage Stressosome Bioinformatics
	Protein-protein interactions: a review of protein dimer structures. [My Copy] Prog Biophys Mol Biol, Vol. 63, No. 1. (1995), pp. 31-65. by S. Jones, J. M. Thornton posted by 10 people viktor21614 bicko barry chad_davis joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	PISCES: a protein sequence culling server. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 12. (12 August 2003), pp. 1589-1591. by Guoli Wang, Roland L. Dunbrack posted by 13 people TLVincent reyez barry aalibes kaarsinogen j3xucite dgront blackbart mloewer ezralanglois structural_bioinformatics Bioinformatics chgjb
	Comparative assessment of large-scale data sets of protein-protein interactions. [My Copy] Nature, Vol. 417, No. 6887. (23 May 2002), pp. 399-403. by Christian von Mering, Roland Krause, Berend Snel, et al.Michael Cornell, Stephen G. Oliver, Stanley Fields, Peer Bork posted by 32 people aceol nzm lawraga semin camster barry dragonrez bicko lfriedl chad_davis alexg j3xucite bundschu yeastyboy ruvido raiyar grahamc iris_2001 cmor shu dbk-lab structural_bioinformatics kdl Bioinformatics generif_paper Evangelia shikin Pao-Yang GeneGo carlk cerca ethkim
	The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. [My Copy] Nucleic acids research. , Vol. 33, No. Database issue. (1 January 2005) by Frances Pearl, Annabel Todd, Ian Sillitoe, et al.Mark Dibley, Oliver Redfern, Tony Lewis, Christopher Bennett, Russell Marsden, Alistair Grant, David Lee, Adrian Akpor, Michael Maibaum, Andrew Harrison, Timothy Dallman, Gabrielle Reeves, Ilhem Diboun, Sarah Addou, Stefano Lise, Caroline Johnston, Antonio Sillero, Janet Thornton, Christine Orengo posted by 9 people dfdong Orengo Group Journal Picks sillitoe barry tjimenez chrn alexg structural_bioinformatics Bioinformatics
	Structure-based systems biology: a zoom lens for the cell. [My Copy] FEBS Lett, Vol. 579, No. 8. (21 March 2005), pp. 1854-1858. by P. Aloy, R. B. Russell posted by 7 people karbak barry lyongu biosv structural_bioinformatics Bioinformatics chad_davis
	Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 10. (13 May 2003), pp. 5772-5777. by B. Ma, T. Elkayam, H. Wolfson, R. Nussinov posted by 13 people tbinbal dkoveal mdimmic barry bicko lyongu nickolay choonpeng cjeans carlescorbi structural_bioinformatics Bioinformatics ladab
	Statistical potentials for fold assessment. [My Copy] Protein Sci, Vol. 11, No. 2. (February 2002), pp. 430-448. by F. Melo, R. Sánchez, A. Sali posted by 9 people rabio krapnik mijam mcbla barry eckart_bindewald dgront structural_bioinformatics Bioinformatics
	Intramolecular Signaling Pathways Revealed by Modeling Anisotropic Thermal Diffusion [My Copy] Journal of Molecular Biology, Vol. 351, No. 2. (12 August 2005), pp. 345-354. by Nobuyuki Ota, David A. Agard posted by 6 people barry pansapiens lna choonpeng structural_bioinformatics Bioinformatics
	Protein-protein interactions: hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: implications for docking. [My Copy] J Mol Biol, Vol. 344, No. 3. (26 November 2004), pp. 781-795. by X. Li, O. Keskin, B. Ma, R. Nussinov, J. Liang posted by 13 people barry baaden bicko nickolay j3xucite bluvsh1 xz grahamc structural_bioinformatics Bioinformatics Evangelia ladab paolomarcatili
	Classification and evolution of P-loop GTPases and related ATPases. [My Copy] J Mol Biol, Vol. 317, No. 1. (15 March 2002), pp. 41-72. by D. D. Leipe, Y. I. Wolf, E. V. Koonin, L. Aravind posted by 7 people laurabailey barry Einat tny leemary4 structural_bioinformatics Bioinformatics
	Linked: How Everything Is Connected to Everything Else and What It Means [My Copy] (29 April 2003) by Albert-Laszlo Barabasi posted by 139 people senseable-urb fjanoos arkas rprince ulmer kinop borkurdotnet scottmoody davidleitner simdoc makrehchi fierykylin tomhebbron boosda Information Integration Architecture mxro thegoose rickl MariaChiaraP pdlug nazimkeven eddymier mboehmer ajaymalik pacianca3 donade einatb gastarblogger fbr maike emre panisson Adso gkoenig mattjb mooniii pick600 germoglio hrwiltse laurobeltrao nigini camster draggin korakot Mandre A_Olympia zephoria RyanSchultz fmatthes scholz barry cyprien riadlem lehel zinp nkorf tautai wcrosbie cchesher cmmorel jekky Typewriter mbliemel Jenneke cgjj slariccia irinas petzlux marije seawidget hannont matteodellamico leonardo bibliothecaire bigbossman krisl spirit_of_numenor cristinaalp brusilovsky jwdietrich britton cerkut awooga mzygmunt azygmunt RafG jaspervoskuilen kevinemamy timflutre alexevasion flavian_vasile mattlandau PaulBHartzog roland_ewald jenna anansi sidds1601 rkalvi JimFolk CMU-HCII Philosophy_of_Information dbk-lab Blog_and_Wiki_Research automatic_summarization structural_bioinformatics CSCW MathBio ASR digital_youth Sociology Librarians Semantic-Social-Networks Wikipedia CoP_CMS Bioinformatics folksonomy ETEC533 CMS Cybernetics social_navigation ComplexAdaptiveSystems Biomedical_Cybernetics AGH-IISG Adaptive-Web dIEMoSIRIS MoSi-Rostock AQUA-FONTIS-Study MASSS CSU_School_of_Education Web2-0_Education asrilova Social Web anton-tayanovskyy ICT4D aelzaim copyculture kamccollum kikimu thecolourblue
	Computational Alanine Scanning of Protein-Protein Interfaces [My Copy] Sci. STKE, Vol. 2004, No. 219. (10 February 2004), pl2. by Tanja Kortemme, David E. Kim, David Baker posted by 15 people chemrahul82 onufriev pablocarb bicko barry sangeetha blackbart joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics insilicodrug skoddet
	Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility. [My Copy] Proteins, Vol. 60, No. 2. (1 August 2005), pp. 187-194. by O. Schueler-Furman, C. Wang, D. Baker posted by 6 people barry jwm bicko bluvsh1 structural_bioinformatics Bioinformatics
	Soft protein-protein docking in internal coordinates. [My Copy] Protein Sci, Vol. 11, No. 2. (February 2002), pp. 280-291. by J. Fernández-Recio, M. Totrov, R. Abagyan posted by 8 people barry bicko bluvsh1 cjeans selrac structural_bioinformatics Bioinformatics wilbur
	Coarse-grained normal mode analysis in structural biology [My Copy] Current Opinion in Structural Biology, Vol. 15, No. 5. (October 2005), pp. 586-592. by Ivet Bahar, Aj Rader posted by 10 people BragilMassoud apaydin barry aqeel shuns scis0000001 insectopalo structural_bioinformatics Bioinformatics higueruelo
	How similar are protein folding and protein binding nuclei? Examination of vibrational motions of energy hot spots and conserved residues. [My Copy] Biophys J, Vol. 88, No. 3. (March 2005), pp. 1552-1559. by T. Haliloglu, O. Keskin, B. Ma, R. Nussinov posted by 7 people barry baaden aqeel eweaver choonpeng structural_bioinformatics Bioinformatics
	Microarray data analysis: from disarray to consolidation and consensus. [My Copy] Nature reviews. Genetics, Vol. 7, No. 1. (01 January 2006), pp. 55-65. by David B. Allison, Xiangqin Cui, Grier P. Page, Mahyar Sabripour posted by 35 people stharward antonkratz ipark-kaist svozil bertelsen Bioinformatics - CRUK Stew daforerog winterschlaefer verdicchio guhjy barry textoris jfr Ayest balicea sterovetta lhonigberg acidwizard ronaldozhou vpschulz rmk schuylrp Garamonfok debasis GeeSharpMinor dimatura structural_bioinformatics Bioinformatics heliopais shikin minostro giovenko jo_davies aviad_work
	Detection and reduction of evolutionary noise in correlated mutation analysis [My Copy] Protein Engineering, Design and Selection, Vol. 18, No. 5. (1 May 2005), pp. 247-253. by Orly Noivirt, Miriam Eisenstein, Amnon Horovitz posted by 6 people orr barry gbart cjeans structural_bioinformatics Bioinformatics
	Rotamer Libraries in the 21st Century [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 4. (1 August 2002), pp. 431-440. by R. Dunbrack posted by 12 people aqeel msuarezdiez carlosjavierna apaydin barry joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics LamBras
	Clustering of low-energy conformations near the native structures of small proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 95, No. 19. (15 September 1998), pp. 11158-11162. by D. Shortle, K. T. Simons, D. Baker posted by 9 people barry thaliana dgront joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	Representing receptor flexibility in ligand docking through relevant normal modes. [My Copy] J Am Chem Soc, Vol. 127, No. 26. (6 July 2005), pp. 9632-9640. by C. N. Cavasotto, J. A. Kovacs, R. A. Abagyan posted by 10 people BragilMassoud apaydin barry aqeel yongzhao kazemi structural_bioinformatics Bioinformatics TSRI_MGL LamBras
	Change in protein flexibility upon complex formation: analysis of Ras-Raf using molecular dynamics and a molecular framework approach. [My Copy] Proteins, Vol. 56, No. 2. (1 August 2004), pp. 322-337. by H. Gohlke, L. A. Kuhn, D. A. Case posted by 7 people bmduggan barry lna aqeel blackbart structural_bioinformatics Bioinformatics
	Conformational sampling for the impatient. [My Copy] Biophys Chem, Vol. 107, No. 3. (15 February 2004), pp. 213-220. by K. Tai posted by 7 people barry baaden yongzhao dgront structural_bioinformatics Bioinformatics TSRI_MGL
	Complementarity of Structure Ensembles in Protein-Protein Binding [My Copy] Structure, Vol. 12, No. 12. (December 2004), pp. 2125-2136. by Raik Grunberg, Johan Leckner, Michael Nilges posted by 8 people raik barry lna allmensch cursonivel1 structural_bioinformatics Bioinformatics cursonivel1
	Intrinsically Disordered Loops Inserted into the Structural Domains of Human Proteins [My Copy] Journal of Molecular Biology, Vol. 355, No. 4. (27 January 2006), pp. 845-857. by Satoshi Fukuchi, Keiichi Homma, Yoshiaki Minezaki, Ken Nishikawa posted by 4 people barry tny structural_bioinformatics Bioinformatics
	Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces. [My Copy] Bioinformatics, Vol. 21, No. 12. (15 June 2005), pp. 2850-2855. by A. S. Aytuna, A. Gursoy, O. Keskin posted by 7 people apaydin barry bicko j3xucite dyermd structural_bioinformatics Bioinformatics
	Ligand binding affinities from MD simulations. [My Copy] Acc Chem Res, Vol. 35, No. 6. (June 2002), pp. 358-365. by J. Aqvist, V. B. Luzhkov, B. O. Brandsdal posted by 7 people flbarroso barry baaden dimka superpyrin structural_bioinformatics Bioinformatics
	Thermodynamic calculations in biological systems [My Copy] Biophysical Chemistry, Vol. In Press, Corrected Proof by Mario L. Amzel, Xavier Siebert, Anthony Armstrong, German Pabon posted by 10 people Scis0000002 barry pansapiens shuns imouthesmp ttjoseph nknii structural_bioinformatics Bioinformatics TCR_Signaling
	Probing the local dynamics of nucleotide-binding pocket coupled to the global dynamics: myosin versus kinesin. [My Copy] Biophys J (6 May 2005) by Wenjun Zheng, Bernard R R. Brooks posted by 8 people BragilMassoud barry baaden aqeel shuns qwermish structural_bioinformatics Bioinformatics
	Three-dimensional, sequence order-independent structural comparison of a serine protease against the crystallographic database reveals active site similarities: potential implications to evolution and to protein folding. [My Copy] Protein Sci, Vol. 3, No. 5. (May 1994), pp. 769-778. by D. Fischer, H. Wolfson, S. L. Lin, R. Nussinov posted by 7 people barry aalibes shadowman tjimenez structural_bioinformatics Bioinformatics chrys
	Reverse Engineering of Biological Complexity [My Copy] Science, Vol. 295, No. 5560. (1 March 2002), pp. 1664-1669. by Marie E. Csete, John C. Doyle posted by 31 people tomhebbron yyfwuhan abhishek_tiwari jdscheff jporternj Scis0000002 reyez camster snuppepuppan barry monod lyongu wnpx ddahlem dullhunk adepace javierFellow livingthingdan kevinemamy anatiferous timflutre dbilar jrbanga dbk-lab structural_bioinformatics Bioinformatics EisenLab livingthing clab edvin bayesian
	MolMovDB: analysis and visualization of conformational change and structural flexibility. [My Copy] Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 478-482. by N. Echols, D. Milburn, M. Gerstein posted by 10 people barry nigham yongzhao joergkurtwegner structural_bioinformatics Bioinformatics TSRI_MGL Molecular-Modelling Drug-Design Cheminformatics
	Identification of dynamical correlations within the myosin motor domain by the normal mode analysis of an elastic network model. [My Copy] J Mol Biol, Vol. 346, No. 3. (25 February 2005), pp. 745-759. by W. Zheng, B. Brooks posted by 5 people barry lna aqeel structural_bioinformatics Bioinformatics
	Analysis of domain motions by approximate normal mode calculations [My Copy] Proteins: Structure, Function, and Genetics, Vol. 33, No. 3. (9 March 1999), pp. 417-429. by Konrad Hinsen posted by 9 people abovell BragilMassoud barry shadowman aqeel yongzhao structural_bioinformatics Bioinformatics TSRI_MGL
	Roles of native topology and chain-length scaling in protein folding: a simulation study with a Go-like model. [My Copy] J Mol Biol, Vol. 313, No. 1. (12 October 2001), pp. 171-180. by N. Koga, S. Takada posted by 5 people barry aalibes nigham structural_bioinformatics Bioinformatics
	Elastic Properties of Proteins: Insight on the Folding Process and Evolutionary Selection of Native Structures [My Copy] Journal of Molecular Biology, Vol. 321, No. 5. (30 August 2002), pp. 909-921. by Cristian Micheletti, Gianluca Lattanzi, Amos Maritan posted by 5 people barry Einat structural_bioinformatics Bioinformatics Diego_Prada
	iGNM: a database of protein functional motions based on Gaussian Network Model. [My Copy] Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 2978-2987. by L. W. Yang, X. Liu, C. J. Jursa, et al.M. Holliman, A. J. Rader, H. A. Karimi, I. Bahar posted by 7 people barry baaden yongzhao choonpeng structural_bioinformatics Bioinformatics TSRI_MGL
	Algorithms for estimating relative importance in networks [My Copy] In KDD '03: Proceedings of the ninth ACM SIGKDD international conference on Knowledge discovery and data mining (2003), pp. 266-275. by Scott White, Padhraic Smyth posted by 19 people gregdavisfromnj ttylenda kohei-o korakot elsantosneto barry aalibes ldietz anon_pl azygmunt jmarcelino hannu Philosophy_of_Information Blog_and_Wiki_Research structural_bioinformatics Bioinformatics AGH-IISG ThinkTank tnhh
	Amino acids determining enzyme-substrate specificity in prokaryotic and eukaryotic protein kinases [My Copy] PNAS, Vol. 100, No. 8. (15 April 2003), pp. 4463-4468. by Lewyn Li, Eugene I. Shakhnovich, Leonid A. Mirny posted by 5 people barry Einat ankur_iitg structural_bioinformatics Bioinformatics
	Conservation of electrostatic properties within enzyme families and superfamilies. [My Copy] Biochemistry, Vol. 42, No. 12. (1 April 2003), pp. 3464-3473. by D. R. Livesay, P. Jambeck, A. Rojnuckarin, S. Subramaniam posted by 4 people barry Einat structural_bioinformatics Bioinformatics
	Protein-Protein Interactions: Coupling of Structurally Conserved Residues and of Hot Spots across Interfaces. Implications for Docking [My Copy] Structure, Vol. 12, No. 6. (June 2004), pp. 1027-1038. by Inbal Halperin, Haim Wolfson, Ruth Nussinov posted by 5 people barry bicko structural_bioinformatics Bioinformatics Evangelia
	An information-theoretic definition of similarity [My Copy] In Proc. 15th International Conf. on Machine Learning (1998), pp. 296-304. by Dekang Lin posted by 45 people ulmer memming jkominek WIT-KA jiria camster dbk sourada korakot LeightonP frednicolier parmentierf JacquesC mortimer mote lwilliams jelsas jtextori barry ingo gangli garyfeng okarsligil onlyme gaudan macavity1g streptomyces NU-PRL Philosophy_of_Information UoY-CS-AIG dbk-lab Blog_and_Wiki_Research structural_bioinformatics tulip ReadingLab ASR ISI NLP SLA Bioinformatics LanguageAndBrain AI Tronhus CitoJam sgoetz
	Anatomy of hot spots in protein interfaces [My Copy] Journal of Molecular Biology, Vol. 280, No. 1. (03 July 1998), pp. 1-9. by Andrew A. Bogan, Kurt S. Thorn posted by 6 people csrocha barry bicko structural_bioinformatics Bioinformatics timg
	Anchor residues in protein–protein interactions [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 31. (3 August 2004), pp. 11287-11292. by Deepa Rajamani, Spencer Thiel, Sandor Vajda, Carlos J. Camacho posted by 8 people mikaellund dkoveal barry bicko bluvsh1 structural_bioinformatics Bioinformatics boris_aguilar
	Force probe molecular dynamics simulations. [My Copy] Methods Mol Biol, Vol. 305 (2005), pp. 493-515. by H. Grubmüller posted by 5 people barry baaden choonpeng structural_bioinformatics Bioinformatics
	Unveiling the full potential of flexible receptor docking using multiple crystallographic structures. [My Copy] J Med Chem, Vol. 48, No. 13. (30 June 2005), pp. 4432-4443. by X. Barril, S. D. Morley posted by 7 people BragilMassoud apaydin barry yongzhao structural_bioinformatics Bioinformatics TSRI_MGL
	Complexity vs stability in small-world networks [My Copy] (24 July 2004) by Sitabhra Sinha posted by 22 people nettraq korakot sccook annagold tglaisyer rasca barry jrw zqshen rvasa lyongu cwoodward scottmoody balicea fuzzy7761 Philosophy_of_Information Blog_and_Wiki_Research structural_bioinformatics GraphVis Bioinformatics semantic-multicast-routing DickSilver
	In silico Discovery of Enzyme-Substrate Specificity-determining Residue Clusters [My Copy] Journal of Molecular Biology, Vol. 352, No. 5. (7 October 2005), pp. 1105-1117. by Gong-Xin Yu, Byung-Hoon Park, Praveen Chandramohan, Rajesh Munavalli, Al Geist, Nagiza F. Samatova posted by 4 people barry cjeans structural_bioinformatics Bioinformatics
	Hierarchical clustering of the correlation patterns: New method of domain identification in proteins. [My Copy] Biophys Chem (24 August 2005) by S O O. Yesylevskyy, V N N. Kharkyanen, A P P. Demchenko posted by 6 people barry yongzhao choonpeng structural_bioinformatics Bioinformatics TSRI_MGL
	Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian Dynamics program [My Copy] Computer Physics Communications, Vol. 91, No. 1-3. (02 September 1995), pp. 57-95. by J. Madura posted by 5 people flbarroso barry structural_bioinformatics Bioinformatics sim82
	A comparative study of motor-protein motions by using a simple elastic-network model. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 23. (11 November 2003), pp. 13253-13258. by W. Zheng, S. Doniach posted by 8 people abovell barry aqeel shuns barry2 qwermish structural_bioinformatics Bioinformatics
	Prediction of protein-protein interactions using distant conservation of sequence patterns and structure relationships. [My Copy] Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3360-3368. by J. Espadaler, O. Romero-Isart, R. M. Jackson, B. Oliva posted by 5 people barry bicko baldo structural_bioinformatics Bioinformatics
	Approximate protein structural alignment in polynomial time. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 33. (17 August 2004), pp. 12201-12206. by R. Kolodny, N. Linial posted by 4 people barry vavi structural_bioinformatics Bioinformatics
	A comprehensive update of the sequence and structure classification of kinases [My Copy] BMC Structural Biology, Vol. 5, No. 1. (16 March 2005), 6. by Sara Cheek, Krzysztof Ginalski, Hong Zhang, Nick Grishin posted by 4 people barry tjimenez structural_bioinformatics Bioinformatics
	Regulation of Protein Kinases: Controlling Activity through Activation Segment Conformation [My Copy] Molecular Cell, Vol. 15, No. 5. (10 September 2004), pp. 661-675. by Brad Nolen, Susan Taylor, Gourisankar Ghosh posted by 4 people barry tjimenez structural_bioinformatics Bioinformatics
	Correlations Among Amino Acid Sites in bHLH Protein Domains: An Information Theoretic Analysis [My Copy] Mol Biol Evol, Vol. 17, No. 1. (1 January 2000), pp. 164-178. by William R. Atchley, Kurt R. Wollenberg, Walter M. Fitch, Werner Terhalle, Andreas W. Dress posted by 5 people mgomes barry structural_bioinformatics Bioinformatics friendpine
	How does a protein fold? [My Copy] Nature, Vol. 369, No. 6477. (19 May 1994), pp. 248-251. by A. Sali, E. Shakhnovich, M. Karplus posted by 6 people mijam ucbcjbm barry evaf structural_bioinformatics Bioinformatics
	Six Degrees: The New Science of Networks [My Copy] (06 May 2004) by Duncan J. Watts posted by 11 people camster qaramazov korakot barry AdrianMiles dullhunk Philosophy_of_Information dbk-lab Blog_and_Wiki_Research structural_bioinformatics Bioinformatics
	New tools and data for improving structures, using all-atom contacts. [My Copy] Methods Enzymol, Vol. 374 (2003), pp. 385-412. by J. S. Richardson, W. A. Bryan, D. C. Richardson posted by 7 people barry joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	The Allosteric Mechanism of Yeast Chorismate Mutase: A Dynamic Analysis [My Copy] Journal of Molecular Biology, Vol. 356, No. 1. (10 February 2006), pp. 237-247. by Yifei Kong, Jianpeng Ma, Martin Karplus, William N. Lipscomb posted by 5 people barry ruvido structural_bioinformatics Bioinformatics higueruelo
	Analysis methods for comparison of multiple molecular dynamics trajectories: applications to protein unfolding pathways and denatured ensembles. [My Copy] J Mol Biol, Vol. 290, No. 1. (2 July 1999), pp. 283-304. by S. L. Kazmirski, A. Li, V. Daggett posted by 5 people barry lillekatt choonpeng structural_bioinformatics Bioinformatics
	Conformational dynamics and enzyme activity [My Copy] Biochimie, Vol. 80, No. 1. (January 1998), pp. 33-42. by J. Yon, D. Perahia, C. Ghelis posted by 7 people barry joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	Constrained geometric simulation of diffusive motion in proteins [My Copy] Physical Biology, Vol. 2, No. 4. (December 2005), S127. by Stephen Wells, Scott Menor, Brandon Hespenheide, M. F. Thorpe posted by 5 people apaydin barry structural_bioinformatics Bioinformatics higueruelo
	Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap. [My Copy] Proc Natl Acad Sci U S A, Vol. 97, No. 7. (28 March 2000), pp. 3288-3291. by K. R. Wollenberg, W. R. Atchley posted by 5 people druvus barry structural_bioinformatics Bioinformatics friendpine
	Are protein-protein interfaces more conserved in sequence than the rest of the protein surface? [My Copy] Protein Science: a Publication Of The Protein Society, Vol. 13, No. 1. (January 2004), pp. 190-202. by Daniel R. Caffrey, Shyamal Somaroo, Jason D. Hughes, Julian Mintseris, Enoch S. Huang posted by 4 people barry structural_bioinformatics Bioinformatics wilbur
	The nonconserved wrapping of conserved protein folds reveals a trend toward increasing connectivity in proteomic networks. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 9. (2 March 2004), pp. 2823-2827. by A. Fernández, R. Scott, R. S. Berry posted by 5 people marti barry baaden structural_bioinformatics Bioinformatics
	Small World: Uncovering Nature's Hidden Networks [My Copy] (13 June 2002) by Mark Buchanan posted by 9 people camster korakot barry Philosophy_of_Information dbk-lab Blog_and_Wiki_Research structural_bioinformatics Bioinformatics kaks
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