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	Protein families and their evolution-a structural perspective. [My Copy] Annu Rev Biochem, Vol. 74 (2005), pp. 867-900. by C. A. Orengo, J. M. Thornton posted by 25 people ucbcjbm flbarroso kumar_physics yuslinaz ssgong ana barry tjimenez jwm chad_davis Einat Schmidtc marcius sriram_s ezotenko redelings medic0747 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF nigham sim82
	Influence of conservation on calculations of amino acid covariance in multiple sequence alignments. [My Copy] Proteins, Vol. 56, No. 2. (1 August 2004), pp. 211-221. by Anthony A. Fodor, Richard W. Aldrich posted by 13 people dfdong mgomes qluo RebeccaHamer ana gbart cjeans jlh64 structural_bioinformatics Bioinformatics mingzhi dgront Lombardo_7
	The relation between the divergence of sequence and structure in proteins. [My Copy] The EMBO journal, Vol. 5, No. 4. (April 1986), pp. 823-826. by C. Chothia, A. M. Lesk posted by 20 people martainn ucbcjbm bertelsen semin sgoetz cen4ik ana pansapiens jwm Einat marcius xdeupi ffranca insectopalo structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	Natural-like function in artificial WW domains [My Copy] Nature, Vol. 437, No. 7058., pp. 579-583. by William P. Russ, Drew M. Lowery, Prashant Mishra, Michael B. Yaffe, Rama Ranganathan posted by 12 people ana barry balajis marcius caporaso structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF bethbromley ca3295
	Toward High-Resolution de Novo Structure Prediction for Small Proteins [My Copy] Science, Vol. 309, No. 5742. (16 September 2005), pp. 1868-1871. by Philip Bradley, Kira M. S. Misura, David Baker posted by 16 people ucbcjbm paddydu kgutwin BragilMassoud ana barry thaliana jwm vavi marcius gbart thamelry structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Local complexity of amino acid interactions in a protein core. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 1. (6 January 2004), pp. 111-116. by R. K. Jain, R. Ranganathan posted by 10 people ana barry lna marcius gbart choonpeng structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Understanding nature's catalytic toolkit. [My Copy] Trends Biochem Sci (5 October 2005) by Alex Gutteridge, Janet M M. Thornton posted by 16 people ucbcjbm ana jwm Einat alexg gbart eweaver tny noby siebertm structural_bioinformatics Radiation_Damage Stressosome Bioinformatics grottenolm sim82
	Allosteric determinants in guanine nucleotide-binding proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 24. (25 November 2003), pp. 14445-14450. by M. E. Hatley, S. W. Lockless, S. K. Gibson, A. G. Gilman, R. Ranganathan posted by 11 people qluo barry lna Einat marcius caporaso structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF
	On Evolutionary Conservation of Thermodynamic Coupling in Proteins [My Copy] Journal of Biological Chemistry, Vol. 279, No. 18. (30 April 2004), pp. 19046-19050. by Anthony A. Fodor, Richard W. Aldrich posted by 10 people ana barry gbart cjeans tale structural_bioinformatics Bioinformatics friendpine ca3295 Lombardo_7
	Fragnostic: walking through protein structure space. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005) by I. Friedberg, A. Godzik posted by 12 people ana barry pansapiens aalibes Einat marcius alexg eweaver structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	A new progressive-iterative algorithm for multiple structure alignment. [My Copy] Bioinformatics (7 June 2005) by Dmitry Lupyan, Alejandra Leo-Macias, Angel R R. Ortiz posted by 10 people tomjad sebk ana dimka marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF tjimenez
	Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 43. (26 October 2004), pp. 15346-15351. by B. Qian, A. R. Ortiz, D. Baker posted by 10 people aqeel ana barry lna marcius dgront structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function. [My Copy] J Mol Biol, Vol. 291, No. 1. (6 August 1999), pp. 177-196. by L. A. Mirny, E. I. Shakhnovich posted by 8 people ana barry Einat marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Statistical coevolution analysis and molecular dynamics: identification of amino acid pairs essential for catalysis. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 4. (25 January 2005), pp. 994-999. by R. A. Estabrook, J. Luo, M. M. Purdy, et al.V. Sharma, P. Weakliem, T. C. Bruice, N. O. Reich posted by 7 people ana barry pansapiens dimka gbart structural_bioinformatics Bioinformatics
	Protein molecular function prediction by Bayesian phylogenomics. [My Copy] PLoS computational biology, Vol. 1, No. 5. (7 October 2005) by B. E. Engelhardt, M. I. Jordan, K. E. Muratore, S. E. Brenner posted by 14 people sgoetz engelhardt kentsis ana eoghanharr Einat dlr marcius sriram_s bootsy structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Practical lessons from protein structure prediction. [My Copy] Nucleic Acids Res, Vol. 33, No. 6. (2005), pp. 1874-1891. by K. Ginalski, N. V. Grishin, A. Godzik, L. Rychlewski posted by 13 people mcbla ana aalibes thaliana okarsligil marcius duartemolha dgront mirzazadeh structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	SCOPPI: a structural classification of protein-protein interfaces. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006) by Christof Winter, Andreas Henschel, Wan Kyu K. Kim, Michael Schroeder posted by 15 people winterschlaefer higueruelo sjcockell ana kuhn bicko chad_davis marcius choonpeng structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF Evangelia kintoki
	MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading. [My Copy] Proteins, Vol. 49, No. 3. (15 November 2002), pp. 350-364. by L. Lu, H. Lu, J. Skolnick posted by 12 people ana bicko chad_davis marcius sangeetha ruvido structural_bioinformatics Bioinformatics insilicodrug BioinfoCIPF SGU-CIPF kgutwin
	CATH--a hierarchic classification of protein domain structures. [My Copy] Structure (London, England : 1993), Vol. 5, No. 8. (15 August 1997), pp. 1093-1108. by C. A. Orengo, A. D. Michie, S. Jones, D. T. Jones, M. B. Swindells, J. M. Thornton posted by 19 people ucbcjbm flbarroso kumar_physics semin sebk tjimenez dimka jwm chad_davis Einat caporaso structural_bioinformatics Radiation_Damage Stressosome biomedical-nlp massivemayhem sim82 jteyra gulkur
	ROCR: visualizing classifier performance in R. [My Copy] Bioinformatics (11 August 2005) by Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer posted by 16 people natstreet druvus BragilMassoud ana barry Ayest lyongu marcius schlauchi gokhan za structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF bertelsen
	Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and bayesian scoring functions [My Copy] Journal of Molecular Biology, Vol. 268, No. 1. (25 April 1997), pp. 209-225. by K. Simons posted by 15 people chemrahul82 paddydu Diego_Prada reyez guxiyou ana jwm vavi wouterboomsma j3xucite hmk structural_bioinformatics Bioinformatics mijam joule
	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dumpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted by 42 people aceol tomhebbron ajbattle mgomes Scis0000002 lawraga bicko saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology phoenixzxl larsjuhljensen ellakat frohike carlk ethkim
	An analysis of core deformations in protein superfamilies. [My Copy] Biophys J, Vol. 88, No. 2. (February 2005), pp. 1291-1299. by A. Leo-Macias, P. Lopez-Romero, D. Lupyan, D. Zerbino, A. R. Ortiz posted by 10 people apaydin ana barry lna dimka aqeel insectopalo structural_bioinformatics Bioinformatics edvin
	Protein structure comparison by alignment of distance matrices. [My Copy] Journal of molecular biology, Vol. 233, No. 1. (5 September 1993), pp. 123-138. by L. Holm, C. Sander posted by 10 people jwm tjimenez BragilMassoud ana nigham dgront siebertm structural_bioinformatics Bioinformatics sim82
	The relationship between domain duplication and recombination. [My Copy] Journal of molecular biology, Vol. 346, No. 1. (11 February 2005), pp. 355-365. by Christine Vogel, Sarah A. Teichmann, Jose Pereira-Leal posted by 10 people ana marcius tny cjeans martainn mdimon structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	The C-type lectin fold as an evolutionary solution for massive sequence variation [My Copy] Nature Structural & Molecular Biology, Vol. 12, No. 10. (18 September 2005), pp. 886-892. by Stephen A. Mcmahon, Jason L. Miller, Jeffrey A. Lawton, et al.Donald E. Kerkow, Asher Hodes, Marc A. Marti-Renom, Sergei Doulatov, Eswar Narayanan, Andrej Sali, Jeff F. Miller, Partho Ghosh posted by 7 people stevanspringer ana marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Evaluation of protein fold comparison servers. [My Copy] Proteins, Vol. 54, No. 2. (1 February 2004), pp. 260-270. by M. Novotny, D. Madsen, G. J. Kleywegt posted by 7 people reyez ana jwm structural_bioinformatics Radiation_Damage Stressosome Bioinformatics
	'Protein Peeling': an approach for splitting a 3D protein structure into compact fragments [My Copy] Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 129-133. by Jean-Christophe Gelly, Alexandre G. de Brevern, Serge Hazout posted by 11 people ana barry dimka ttjoseph marcius nickolay choonpeng structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Divergent evolution within protein superfolds inferred from profile-based phylogenetics. [My Copy] Journal of molecular biology, Vol. 354, No. 3. (2 December 2005), pp. 722-737. by Douglas L. Theobald, Deborah S. Wuttke posted by 11 people martainn cmura yuslinaz ana barry dlr caporaso structural_bioinformatics Bioinformatics biomedical-nlp McCammon
	Protein structure prediction and structural genomics. [My Copy] Science, Vol. 294, No. 5540. (5 October 2001), pp. 93-96. by D. Baker, A. Sali posted by 14 people mijam newton1234 saunders taikoo ana vavi dgront sriram_s mirzazadeh structural_bioinformatics Bioinformatics mingzhi granujilla janasont
	Long- and short-range interactions in native protein structures are consistent/minimally frustrated in sequence space. [My Copy] Proteins, Vol. 50, No. 1. (1 January 2003), pp. 35-43. by S. Miyazawa, R. L. Jernigan posted by 6 people ana marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	A consensus view of fold space: combining SCOP, CATH, and the Dali Domain Dictionary. [My Copy] Protein Sci, Vol. 12, No. 10. (October 2003), pp. 2150-2160. by R. Day, D. A. Beck, R. S. Armen, V. Daggett posted by 7 people ana barry tjimenez dimka hmk structural_bioinformatics Bioinformatics
	Interrogating protein interaction networks through structural biology. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 9. (30 April 2002), pp. 5896-5901. by P. Aloy, R. B. Russell posted by 17 people kgutwin tomhebbron bpcusack ana barry baaden bicko lfriedl chad_davis henschel ruvido cjeans tale structural_bioinformatics kdl Bioinformatics Evangelia
	Convergent evolution as a mechanism for pathogenic adaptation. [My Copy] Trends Microbiol (7 September 2005) by Sergey Sikora, Alex Strongin, Adam Godzik posted by 6 people ana marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	A model for statistical significance of local similarities in structure. [My Copy] J Mol Biol, Vol. 326, No. 5. (7 March 2003), pp. 1307-1316. by A. Stark, S. Sunyaev, R. B. Russell posted by 11 people karbak ana nigham chad_davis thamelry nickolay robert scis0000001 siebertm structural_bioinformatics Bioinformatics
	A minimal gene set for cellular life derived by comparison of complete bacterial genomes. [My Copy] Proc Natl Acad Sci U S A, Vol. 93, No. 19. (17 September 1996), pp. 10268-10273. by A. R. Mushegian, E. V. Koonin posted by 12 people tomhebbron antonkratz balicea treangen operon ana bjorns jwm gbart structural_bioinformatics Bioinformatics westoll
	Assessing local structural perturbations in proteins. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (13 September 2005) by Martin A. Lema, Julian Echave posted by 6 people ana barry pansapiens Einat structural_bioinformatics Bioinformatics
	Hot regions in protein--protein interactions: the organization and contribution of structurally conserved hot spot residues. [My Copy] J Mol Biol, Vol. 345, No. 5. (4 February 2005), pp. 1281-1294. by O. Keskin, B. Ma, R. Nussinov posted by 12 people marti mdimmic ana barry baaden okarsligil bicko j3xucite bilab xz structural_bioinformatics Bioinformatics
	Mapping the protein universe. [My Copy] Science, Vol. 273, No. 5275. (2 August 1996), pp. 595-603. by L. Holm, C. Sander posted by 10 people operon ana barry dimka robert AbnerCYH structural_bioinformatics Bioinformatics sim82 laurabailey
	Clustering algorithms for identifying core atom sets and for assessing the precision of protein structure ensembles [My Copy] Proteins: Structure, Function, and Genetics, Vol. 59, No. 4. (8 April 2005), pp. 673-686. by David A. Snyder, Gaetano T. Montelione posted by 6 people karbak ana barry dgront structural_bioinformatics Bioinformatics
	FSSA: a novel method for identifying functional signatures from structural alignments. [My Copy] Bioinformatics (28 April 2005) by Kai Wang, Ram Samudrala posted by 5 people ana barry Einat structural_bioinformatics Bioinformatics
	Characterizing Conserved Structural Contacts by Pair-wise Relative Contacts and Relative Packing Groups [My Copy] Journal of Molecular Biology, Vol. 354, No. 3. (2 December 2005), pp. 706-721. by Bradley J. Holmes, Jerry Tsai posted by 5 people ana barry Einat structural_bioinformatics Bioinformatics
	Alternative alignments from comparison of protein structures [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 56, No. 3. (2 April 2004), pp. 519-527. by Edward S. Shih, Ming-Jing Hwang posted by 9 people ana barry Einat eweaver dchughes structural_bioinformatics Bioinformatics G4ID Genetics-of-Gambling
	Small libraries of protein fragments model native protein structures accurately. [My Copy] J Mol Biol, Vol. 323, No. 2. (18 October 2002), pp. 297-307. by R. Kolodny, P. Koehl, L. Guibas, M. Levitt posted by 6 people ana barry eckart_bindewald j3xucite structural_bioinformatics Bioinformatics
	Evolution of protein structures and functions. [My Copy] Curr Opin Struct Biol, Vol. 12, No. 3. (June 2002), pp. 400-408. by L. N. Kinch, N. V. Grishin posted by 13 people korakot karbak matzke ana barry joergkurtwegner Philosophy_of_Information Blog_and_Wiki_Research structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nat Biotech, Vol. 23, No. 1. (06 January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, W. James Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted by 45 people mpizbioinfo megraw Dulce farhat wowalz mhofree jasontsai heliopais pengchy daforerog yylin cambray emptyhb bryankr icases ana barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT dandaman vietanh0 ep161302 nuin Stew
	Core deformations in protein families: a physical perspective. [My Copy] Biophys Chem, Vol. 115, No. 2-3. (1 April 2005), pp. 125-128. by A. Leo-Macias, P. Lopez-Romero, D. Lupyan, D. Zerbino, A. R. Ortiz posted by 6 people ana lna dimka structural_bioinformatics Bioinformatics edvin
	Solving the protein sequence metric problem [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 18. (3 May 2005), pp. 6395-6400. by William R. Atchley, Jieping Zhao, Andrew D. Fernandes, Tanja DrÃ¼ke posted by 5 people ana barry structural_bioinformatics Bioinformatics friendpine
	Comparison of sequence profiles. Strategies for structural predictions using sequence information. [My Copy] Protein Sci, Vol. 9, No. 2. (February 2000), pp. 232-241. by L. Rychlewski, L. Jaroszewski, W. Li, A. Godzik posted by 6 people j3xucite ana aalibes dgront structural_bioinformatics Bioinformatics
	Automatic classification of protein structure by using Gauss integrals. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 1. (7 January 2003), pp. 119-124. by P. Rogen, B. Fain posted by 6 people ana barry dimka tny structural_bioinformatics Bioinformatics
	Progress in Modeling of Protein Structures and Interactions [My Copy] Science, Vol. 310, No. 5748. (28 October 2005), pp. 638-642. by Ora Schueler-Furman, Chu Wang, Phil Bradley, Kira Misura, David Baker posted by 22 people krapnik rabio ucbcjbm paddydu flbarroso thaliana jwm vavi bicko KyuhoLee marcius eweaver tny nickolay dgront rsantana mirzazadeh insectopalo BioinfoCIPF SGU-CIPF barry structural_bioinformatics
	The Protein Data Bank [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242. by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne posted by 50 people krapnik barmak7282 viktor21614 badi ucbcjbm TLVincent maria_hauser Martin8223 tomjad Diego_Prada flbarroso Taguan oceanwind dsmueller fisherp semin MarcoAlvarez kumar_physics References for 3DSim paper LamBras RamuAnandakrishnan nlapalu reyez nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon aengisch debatebob massivemayhem gisle girschick selrac Radiation_Damage Stressosome biomedical-nlp beta tji higueruelo boris_aguilar sebk timg
	Perl Best Practices [My Copy] (12 July 2005) by Damian Conway posted by 13 people ana barry planetoid tt indigoviolet Blog_and_Wiki_Research structural_bioinformatics digital_youth Librarians Wikipedia Bioinformatics EisenLab folksonomy
	Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast. [My Copy] J Mol Biol, Vol. 307, No. 3. (30 March 2001), pp. 929-938. by J. Park, M. Lappe, S. A. Teichmann posted by 8 people medic0747 chad_davis ronkeliz ana tjimenez cjeans structural_bioinformatics Bioinformatics
	Horizontal gene transfer in prokaryotes: quantification and classification. [My Copy] Annu Rev Microbiol, Vol. 55 (2001), pp. 709-742. by E. V. Koonin, K. S. Makarova, L. Aravind posted by 9 people ana jmeppley madhadron caporaso vwchan structural_bioinformatics Bioinformatics biomedical-nlp beta
	Topology fingerprint approach to the inverse protein folding problem. [My Copy] J Mol Biol, Vol. 227, No. 1. (5 September 1992), pp. 227-238. by A. Godzik, A. Kolinski, J. Skolnick posted by 6 people ana vavi dgront rabio structural_bioinformatics Bioinformatics
	Recoverable one-dimensional encoding of protein three-dimensional structures. [My Copy] Bioinformatics (18 February 2005) by Akira R R. Kinjo, Ken Nishikawa posted by 7 people karbak ana barry penka mtw structural_bioinformatics Bioinformatics
	The Relationship between the Flexibility of Proteins and their Conformational States on Forming Protein-Protein Complexes with an Application to Protein-Protein Docking [My Copy] Journal of Molecular Biology, Vol. 347, No. 5. (15 April 2005), pp. 1077-1101. by Graham R. Smith, Michael Sternberg, Paul A. Bates posted by 10 people ana barry aqeel bicko yongzhao ttjoseph structural_bioinformatics Bioinformatics TSRI_MGL jteyra
	Evolution of the Protein Repertoire [My Copy] Science, Vol. 300, No. 5626. (13 June 2003), pp. 1701-1703. by Cyrus Chothia, Julian Gough, Christine Vogel, Sarah A. Teichmann posted by 6 people karbak ana barry tny structural_bioinformatics Bioinformatics
	The properties of protein family space depend on experimental design [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2618-2622. by Victor Kunin, Sarah A. Teichmann, Martijn A. Huynen, Christos A. Ouzounis posted by 5 people ana barry cjeans structural_bioinformatics Bioinformatics
	The structural alignment between two proteins: is there a unique answer? [My Copy] Protein Sci, Vol. 5, No. 7. (July 1996), pp. 1325-1338. by A. Godzik posted by 6 people ana j3xucite rabio structural_bioinformatics Bioinformatics Inchoate
	Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility. [My Copy] J Mol Biol, Vol. 244, No. 3. (2 December 1994), pp. 332-350. by R. B. Russell, G. J. Barton posted by 5 people ana barry chad_davis structural_bioinformatics Bioinformatics
	Comparative genomics, minimal gene-sets and the last universal common ancestor. [My Copy] Nat Rev Microbiol, Vol. 1, No. 2. (November 2003), pp. 127-136. by E. V. Koonin posted by 7 people ana dayjm radek Ayest gbart structural_bioinformatics Bioinformatics
	Knowledge based modelling of homologous proteins, Part I: Three-dimensional frameworks derived from the simultaneous superposition of multiple structures. [My Copy] Protein Eng, Vol. 1, No. 5. (v 1987), pp. 377-384. by M. J. Sutcliffe, I. Haneef, D. Carney, T. L. Blundell posted by 6 people sebk ana warlock6x3 medic0747 structural_bioinformatics Bioinformatics
	Small-world view of the amino acids that play a key role in protein folding. [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 65, No. 6 Pt 1. (June 2002) by M. Vendruscolo, N. V. Dokholyan, E. Paci, M. Karplus posted by 12 people ana barry shantanu choonpeng structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Multiple flexible structure alignment using partial order graphs. [My Copy] Bioinformatics (3 March 2005) by Yuzhen Ye, Adam Godzik posted by 5 people ana aalibes jwm structural_bioinformatics Bioinformatics
	Mechanisms of protein folding. [My Copy] Curr Opin Struct Biol, Vol. 11, No. 1. (February 2001), pp. 70-82. by V. Grantcharova, E. J. Alm, D. Baker, A. L. Horwich posted by 6 people ana Einat leemary4 structural_bioinformatics Bioinformatics rph
	A template based method of pattern matching in protein sequences. [My Copy] Prog Biophys Mol Biol, Vol. 54, No. 3. (1989), pp. 159-252. by W. R. Taylor posted by 4 people ana gbart structural_bioinformatics Bioinformatics
	Understanding hierarchical protein evolution from first principles. [My Copy] J Mol Biol, Vol. 312, No. 1. (7 September 2001), pp. 289-307. by N. V. Dokholyan, E. I. Shakhnovich posted by 6 people mdimmic ana barry pansapiens structural_bioinformatics Bioinformatics
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted by 74 people rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser jbhiatt yylin mgomes BioNica idoerg pjcite swp09 kgutwin mcbla cpwardell References for 3DSim paper johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 EisenLab biomedical-nlp Microbial-Ecology Plantandetc mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM
	Fold change in evolution of protein structures. [My Copy] J Struct Biol, Vol. 134, No. 2-3. (n 2001), pp. 167-185. by N. V. Grishin posted by 10 people robfsouza tomhebbron matzke ana barry pansapiens krishnaJCSG martainn structural_bioinformatics Bioinformatics
	Sequence variations within protein families are linearly related to structural variations. [My Copy] J Mol Biol, Vol. 323, No. 3. (25 October 2002), pp. 551-562. by P. Koehl, M. Levitt posted by 6 people ana barry okarsligil insectopalo structural_bioinformatics Bioinformatics
	Evolution of function in protein superfamilies, from a structural perspective [My Copy] Journal of Molecular Biology, Vol. 307, No. 4. (6 April 2001), pp. 1113-1143. by Annabel E. Todd, Christine A. Orengo, Janet M. Thornton posted by 13 people ucbcjbm flbarroso yuslinaz sgoetz ana kuhn tny sriram_s cdallett uz_labu_laimi structural_bioinformatics Bioinformatics sim82
	Microeconomic principles explain an optimal genome size in bacteria. [My Copy] Trends Genet, Vol. 21, No. 1. (January 2005), pp. 21-25. by J. A. Ranea, A. Grant, J. M. Thornton, C. A. Orengo posted by 4 people ana structural_bioinformatics Bioinformatics jwm
	Medium- and long-range interaction parameters between amino acids for predicting three-dimensional structures of proteins. [My Copy] Macromolecules, Vol. 9, No. 6. (c 1976), pp. 945-950. by S. Tanaka, H. A. Scheraga posted by 7 people ana thaliana dgront aengisch mcbla structural_bioinformatics Bioinformatics
	Heterogeneity and inaccuracy in protein structures solved by X-ray crystallography. [My Copy] Structure, Vol. 12, No. 5. (May 2004), pp. 831-838. by M. A. DePristo, P. I. de Bakker, T. L. Blundell posted by 7 people ana barry Einat dgront medic0747 structural_bioinformatics Bioinformatics
	Imprint of evolution on protein structures. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 9. (2 March 2004), pp. 2846-2851. by G. Tiana, B. E. Shakhnovich, N. V. Dokholyan, E. I. Shakhnovich posted by 5 people ana barry pansapiens structural_bioinformatics Bioinformatics
	Structural mechanisms for domain movements in proteins [My Copy] Biochemistry, Vol. 33, No. 22. (1994), pp. 6739-6749. by M. Gerstein, A. Lesk, C. Chothia posted by 10 people ana barry pansapiens tny joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	Objective comparison of protein structures: error-scaled difference distance matrices. [My Copy] Acta Crystallogr D Biol Crystallogr, Vol. 56 ( Pt 6) (June 2000), pp. 714-721. by T. R. Schneider posted by 5 people ana barry pansapiens structural_bioinformatics Bioinformatics
	Darwinian Evolution Can Follow Only Very Few Mutational Paths to Fitter Proteins [My Copy] Science, Vol. 312, No. 5770. (7 April 2006), pp. 111-114. by Daniel M. Weinreich, Nigel F. Delaney, Mark A. Depristo, Daniel L. Hartl posted by 20 people stevanspringer barry pansapiens imouthesmp dayjm Einat marcius i41m nirfriedman cmm RowanBarrett ramensky Vaquero structural_bioinformatics Bioinformatics FAB-lab BioinfoCIPF SGU-CIPF Ema bpcusack
	The Relationship Between Sequence and Interaction Divergence in Proteins [My Copy] Journal of Molecular Biology, Vol. 332, No. 5. (3 October 2003), pp. 989-998. by Patrick Aloy, Hugo Ceulemans, Alexander Stark, Robert B. Russell posted by 7 people ana pansapiens eweaver structural_bioinformatics Bioinformatics Evangelia RebeccaHamer
	The Closest BLAST Hit Is Often Not the Nearest Neighbor [My Copy] Journal of Molecular Evolution, Vol. 52, No. 6. (24 June 2001), pp. 540-542. by Liisa B. Koski, G. Brian Golding posted by 10 people pansapiens ana dayjm mycitation indigoviolet AaronDarling structural_bioinformatics Bioinformatics EisenLab cerca
	Structural biologyForm and function instructions [My Copy] Nature, Vol. 437, No. 7058. (21 September 2005), pp. 486-487. by Jeffery W. Kelly posted by 5 people ana barry dayjm structural_bioinformatics Bioinformatics
	Evolution of protein sequences and structures. [My Copy] J Mol Biol, Vol. 291, No. 4. (27 August 1999), pp. 977-995. by T. C. Wood, W. R. Pearson posted by 6 people ana rabio sobolevnrm structural_bioinformatics Bioinformatics baker-group
	Recapitulation of protein family divergence using flexible backbone protein design. [My Copy] J Mol Biol, Vol. 346, No. 2. (18 February 2005), pp. 631-644. by C. T. Saunders, D. Baker posted by 4 people ana barry structural_bioinformatics Bioinformatics
	Detecting putative orthologs. [My Copy] Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1710-1711. by D. P. Wall, H. B. Fraser, A. E. Hirsh posted by 11 people cgaugain operon ana indigoviolet dquest structural_bioinformatics Bioinformatics EisenLab ninch rvosa cerca
	Global optimization of clusters, crystals, and biomolecules. [My Copy] Science, Vol. 285, No. 5432. (27 August 1999), pp. 1368-1372. by D. J. Wales, H. A. Scheraga posted by 4 people ana dgront structural_bioinformatics Bioinformatics
	Sensitivity and selectivity in protein structure comparison. [My Copy] Protein Sci, Vol. 13, No. 3. (March 2004), pp. 773-785. by M. L. Sierk, W. R. Pearson posted by 6 people karbak ana pansapiens huyun110 structural_bioinformatics Bioinformatics
	An analysis of simultaneous variation in protein structures. [My Copy] Protein Eng, Vol. 10, No. 4. (April 1997), pp. 307-316. by G. Chelvanayagam, A. Eggenschwiler, L. Knecht, G. H. Gonnet, S. A. Benner posted by 5 people ana barry structural_bioinformatics Bioinformatics wilbur
	Empirical and structural models for insertions and deletions in the divergent evolution of proteins. [My Copy] J Mol Biol, Vol. 229, No. 4. (20 February 1993), pp. 1065-1082. by S. A. Benner, M. A. Cohen, G. H. Gonnet posted by 9 people gjuggler ana barry mattjb martainn structural_bioinformatics Bioinformatics ComplexAdaptiveSystems DSTO-CAS
	A surface of minimum area metric for the structural comparison of proteins. [My Copy] J Mol Biol, Vol. 258, No. 5. (24 May 1996), pp. 871-892. by A. Falicov, F. E. Cohen posted by 5 people ana barry baaden structural_bioinformatics Bioinformatics
	Tools and databases to analyze protein flexibility; approaches to mapping implied features onto sequences. [My Copy] Methods Enzymol, Vol. 374 (2003), pp. 544-584. by W. G. Krebs, J. Tsai, V. Alexandrov, J. Junker, R. Jansen, M. Gerstein posted by 4 people ana barry structural_bioinformatics Bioinformatics
	Distinguishing homologous from analogous proteins. [My Copy] Syst Zool, Vol. 19, No. 2. (June 1970), pp. 99-113. by W. M. Fitch posted by 6 people sgoetz cgaugain ana barry structural_bioinformatics Bioinformatics
	Convergent evolution: the need to be explicit. [My Copy] Trends Biochem Sci, Vol. 19, No. 1. (January 1994), pp. 15-18. by R. F. Doolittle posted by 4 people ana barry structural_bioinformatics Bioinformatics
	Recognizing protein folds by cluster distance geometry [My Copy] Proteins: Structure, Function, and Genetics, Vol. 60, No. 1. (28 April 2005), pp. 82-89. by Gordon M. Crippen posted by 4 people ana barry structural_bioinformatics Bioinformatics
	Evolution of protein structures and functions [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 3. (01 June 2002), pp. 400-408. by Lisa N. Kinch, Nick V. Grishin posted by 4 people ana barry structural_bioinformatics Bioinformatics
	Optimum superimposition of protein structures: ambiguities and implications. [My Copy] Fold Des, Vol. 1, No. 2. (1996), pp. 123-132. by Z. K. Feng, M. J. Sippl posted by 4 people ana barry structural_bioinformatics Bioinformatics
	Conservation of Orientation and Sequence in Protein Domain-Domain Interactions [My Copy] Journal of Molecular Biology, Vol. 345, No. 5., pp. 1265-1279. by Stephen J. Littler, Simon J. Hubbard posted by 8 people ana bicko Schmidtc cjeans winterschlaefer structural_bioinformatics Bioinformatics wilbur
	Underlying hydrophobic sequence periodicity of protein tertiary structure. [My Copy] J Biomol Struct Dyn, Vol. 22, No. 4. (February 2005), pp. 411-423. by B. D. Silverman posted by 4 people ana barry structural_bioinformatics Bioinformatics
	Extracting multiple structural alignments from pairwise alignments: a comparison of a rigorous and a heuristic approach [My Copy] Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 1002-1009. by Sandelin Erik posted by 4 people ana barry structural_bioinformatics Bioinformatics