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	How Different are Structurally Flexible and Rigid Binding Sites? Sequence and Structural Features Discriminating Proteins that Do and Do not Undergo Conformational Change upon Ligand Binding. [My Copy] J Mol Biol (29 September 2006) by Kannan Gunasekaran, Ruth Nussinov posted by 12 people aqeel reyez BragilMassoud dgruiz radestock lna yongzhao choonpeng TSRI_MGL weisblum higueruelo nickolay
	Identifying allosteric fluctuation transitions between different protein conformational states as applied to Cyclin Dependent Kinase 2 [My Copy] BMC Bioinformatics, Vol. 8 (07 February 2007), 45. by Jenny Gu, Philip E. Bourne posted by 3 people BragilMassoud lna aqeel
	A consensus view of protein dynamics [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 3. (16 January 2007), pp. 796-801. by Manuel Rueda, Carles Ferrer-Costa, Tim Meyer, et al.Alberto Pérez, Jordi Camps, Adam Hospital, Josep L. Gelpí, Modesto Orozco posted by 16 people Diego_Prada bmduggan lna dimka aqeel aswin rabio grahamc hmk zwang biehl Ema phoenixzxl ras The BMM Dome LamBras
	The Gaussian Network Model: Precise Prediction of Residue Fluctuations and Application to Binding Problems [My Copy] Biophys. J., Vol. 91, No. 10. (15 November 2006), pp. 3589-3599. by Burak Erman posted by 2 people lna aqeel
	Molecular dynamics at the root of expansion of function in the M69L inhibitor-resistant TEM beta-lactamase from Escherichia coli. [My Copy] J Am Chem Soc, Vol. 124, No. 32. (14 August 2002), pp. 9422-9430. by S. O. Meroueh, P. Roblin, D. Golemi, et al.L. Maveyraud, S. B. Vakulenko, Y. Zhang, J. P. Samama, S. Mobashery posted by 2 people lna aqeel
	Dynamically driven protein allostery. [My Copy] Nat Struct Mol Biol (13 August 2006) by Nataliya Popovych, Shangjin Sun, Richard H H. Ebright, Charalampos G G. Kalodimos posted by 4 people lna aqeel choonpeng mottonen
	Wiggle-predicting functionally flexible regions from primary sequence. [My Copy] PLoS Comput Biol, Vol. 2, No. 7. (14 July 2006) by J. Gu, M. Gribskov, P. E. Bourne posted by 4 people lna aqeel bicko viktor21614
	oGNM: online computation of structural dynamics using the Gaussian Network Model. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006) by L. W. Yang, A. J. Rader, X. Liu, et al.C. J. Jursa, S. C. Chen, H. A. Karimi, I. Bahar posted by 2 people lna aqeel
	Harmonicity and anharmonicity in protein dynamics: a normal mode analysis and principal component analysis. [My Copy] Proteins, Vol. 23, No. 2. (October 1995), pp. 177-186. by S. Hayward, A. Kitao, N. Go posted by 6 people lna aqeel gane5h sobolevnrm baker-group saravan
	Flexibility and conformational entropy in protein-protein binding. [My Copy] Structure, Vol. 14, No. 4. (April 2006), pp. 683-693. by R. Grünberg, M. Nilges, J. Leckner posted by 9 people hmk raik barry pansapiens lna aqeel allmensch structural_bioinformatics Bioinformatics
	Identification of core amino acids stabilizing rhodopsin. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 19. (11 May 2004), pp. 7246-7251. by A. J. Rader, G. Anderson, B. Isin, H. G. Khorana, I. Bahar, J. Klein-Seetharaman posted by 4 people lna aqeel choonpeng cen4ik
	Protein flexibility and dynamics using constraint theory. [My Copy] J Mol Graph Model, Vol. 19, No. 1. (2001), pp. 60-69. by M. F. Thorpe, M. Lei, A. J. Rader, D. J. Jacobs, L. A. Kuhn posted by 5 people lna aqeel blackbart LamBras higueruelo
	A flexible approach for understanding protein stability. [My Copy] FEBS Lett, Vol. 576, No. 3. (22 October 2004), pp. 468-476. by D. R. Livesay, S. Dallakyan, G. G. Wood, D. J. Jacobs posted by 5 people radestock lna aqeel Einat structural_bioinformatics
	Inhibitor binding alters the directions of domain motions in HIV-1 reverse transcriptase. [My Copy] Proteins, Vol. 49, No. 1. (1 October 2002), pp. 61-70. by N. A. Temiz, I. Bahar posted by 2 people lna aqeel
	Delineation of the allosteric mechanism of a cytidylyltransferase exhibiting negative cooperativity. [My Copy] Nat Struct Biol, Vol. 8, No. 11. (November 2001), pp. 947-952. by S. Y. Stevens, S. Sanker, C. Kent, E. R. Zuiderweg posted by 2 people lna aqeel
	Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor. [My Copy] Proc Natl Acad Sci U S A, Vol. 80, No. 21. (November 1983), pp. 6571-6575. by B. Brooks, M. Karplus posted by 6 people Diego_Prada mkrishna baaden lna aqeel saravan
	Dynamic coupling between the SH2 and SH3 domains of c-Src and Hck underlies their inactivation by C-terminal tyrosine phosphorylation. [My Copy] Cell, Vol. 105, No. 1. (6 April 2001), pp. 115-126. by M. A. Young, S. Gonfloni, G. Superti-Furga, B. Roux, J. Kuriyan posted by 3 people lna aqeel ffranca
	Identification of dynamical correlations within the myosin motor domain by the normal mode analysis of an elastic network model. [My Copy] J Mol Biol, Vol. 346, No. 3. (25 February 2005), pp. 745-759. by W. Zheng, B. Brooks posted by 5 people barry lna aqeel structural_bioinformatics Bioinformatics
	Satisfying hydrogen bonding potential in proteins. [My Copy] J Mol Biol, Vol. 238, No. 5. (20 May 1994), pp. 777-793. by I. K. McDonald, J. M. Thornton posted by 6 people aqeel svozil bicko kaarsinogen lna massivemayhem
	Coupling between catalytic site and collective dynamics: a requirement for mechanochemical activity of enzymes. [My Copy] Structure (Camb), Vol. 13, No. 6. (June 2005), pp. 893-904. by L. W. Yang, I. Bahar posted by 5 people BragilMassoud baaden lna aqeel chrn
	Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 43. (26 October 2004), pp. 15346-15351. by B. Qian, A. R. Ortiz, D. Baker posted by 10 people aqeel ana barry lna marcius dgront structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Change in protein flexibility upon complex formation: analysis of Ras-Raf using molecular dynamics and a molecular framework approach. [My Copy] Proteins, Vol. 56, No. 2. (1 August 2004), pp. 322-337. by H. Gohlke, L. A. Kuhn, D. A. Case posted by 7 people bmduggan barry lna aqeel blackbart structural_bioinformatics Bioinformatics
	Combining docking and molecular dynamic simulations in drug design. [My Copy] Med Res Rev (6 June 2006) by Hernán Alonso, Andrey A A. Bliznyuk, Jill E E. Gready posted by 11 people karinaecomp flbarroso hryk Structural Biology Group TorVergata oteri A_Coletta_Thesis aqeel yongzhao kazemi TSRI_MGL LamBras
	Conformer generation under restraints. [My Copy] Curr Opin Struct Biol, Vol. 16, No. 2. (April 2006), pp. 160-165. by P. I. de Bakker, N. Furnham, T. L. Blundell, M. A. DePristo posted by 5 people aqeel yongzhao dgront rabio TSRI_MGL
	Flexible protein-protein docking [My Copy] Current Opinion in Structural Biology In Theory and simulation/Macromolecular assemblages - Joel Janin and Michael Levitt/Edward H Egelman and Andrew GW Leslie, Vol. 16, No. 2. (April 2006), pp. 194-200. by Alexandre M. J. J. Bonvin posted by 15 people timg flbarroso oteri laurabailey dgruiz aqeel bicko yongzhao ima sangeetha gloria Bioinformatics TSRI_MGL insilicodrug higueruelo
	Can Conformational Change Be Described by Only a Few Normal Modes? [My Copy] Biophys. J., Vol. 90, No. 5. (1 March 2006), pp. 1583-1593. by Paula Petrone, Vijay S. Pande posted by 20 people ahmetbakan csrocha BragilMassoud barry dimka aqeel shuns yongzhao xdeupi choonpeng joergkurtwegner daevans structural_bioinformatics Bioinformatics TSRI_MGL Molecular-Modelling Drug-Design Cheminformatics LabCompMed LamBras
	Accounting for loop flexibility during protein-protein docking. [My Copy] Proteins (21 December 2005) by Karine Bastard, Chantal Prévost, Martin Zacharias posted by 3 people aqeel yongzhao TSRI_MGL
	Conformational changes studied by cryo-electron microscopy. [My Copy] Nat Struct Biol, Vol. 7, No. 9. (September 2000), pp. 711-714. by H. R. Saibil posted by 4 people aqeel yongzhao dgront TSRI_MGL
	Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM [My Copy] Journal of Structural Biology, Vol. 147, No. 3. (September 2004), pp. 315-326. by Florence Tama, Osamu Miyashita, Charles L. Brooks III posted by 3 people aqeel yongzhao TSRI_MGL
	Normal mode-based fitting of atomic structure into electron density maps: application to sarcoplasmic reticulum Ca-ATPase. [My Copy] Biophys J, Vol. 88, No. 2. (February 2005), pp. 818-827. by K. Hinsen, N. Reuter, J. Navaza, D. L. Stokes, J. J. Lacapère posted by 3 people aqeel yongzhao TSRI_MGL
	Analysis of domain motions by approximate normal mode calculations [My Copy] Proteins: Structure, Function, and Genetics, Vol. 33, No. 3. (9 March 1999), pp. 417-429. by Konrad Hinsen posted by 9 people abovell BragilMassoud barry shadowman aqeel yongzhao structural_bioinformatics Bioinformatics TSRI_MGL
	Molecular dynamics simulations [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 2. (1 April 2002), pp. 190-196. by Tomas Hansson, Chris Oostenbrink, Wilfredf van Gunsteren posted by 4 people aqeel yongzhao TSRI_MGL adilson_mohr
	Improved side-chain modeling for protein-protein docking. [My Copy] Protein Sci, Vol. 14, No. 5. (May 2005), pp. 1328-1339. by C. Wang, O. Schueler-Furman, D. Baker posted by 15 people dgront csrocha barry aqeel jwm bicko yongzhao blackbart bluvsh1 hmk selrac structural_bioinformatics Bioinformatics TSRI_MGL Evangelia
	Docking essential dynamics eigenstructures [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 60, No. 2. (24 June 2005), pp. 269-274. by Diana Mustard, David W. Ritchie posted by 7 people Copper_Calcio aqeel yongzhao yhu gane5h TSRI_MGL Conformational_disease
	Protein flexibility prediction by an all-atom mean-field statistical theory. [My Copy] Protein Sci, Vol. 14, No. 7. (July 2005), pp. 1772-1777. by B. P. Pandey, C. Zhang, X. Yuan, J. Zi, Y. Zhou posted by 6 people baaden aqeel yongzhao jessicaopacic TSRI_MGL LabCompMed
	The Relationship between the Flexibility of Proteins and their Conformational States on Forming Protein-Protein Complexes with an Application to Protein-Protein Docking [My Copy] Journal of Molecular Biology, Vol. 347, No. 5. (15 April 2005), pp. 1077-1101. by Graham R. Smith, Michael Sternberg, Paul A. Bates posted by 10 people ana barry aqeel bicko yongzhao ttjoseph structural_bioinformatics Bioinformatics TSRI_MGL jteyra
	Essential dynamics of proteins [My Copy] Proteins: Structure, Function, and Genetics, Vol. 17, No. 4. (December 1993), pp. 412-425. by Andrea Amadei, Antonius B. M. Linssen, Herman J. C. Berendsen posted by 12 people kazemi Diego_Prada baaden aqeel yongzhao ttjoseph ffranca allmensch carlescorbi TSRI_MGL dimka nigham
	Flexible Multi-scale Fitting of Atomic Structures into Low-resolution Electron Density Maps with Elastic Network Normal Mode Analysis [My Copy] Journal of Molecular Biology, Vol. 337, No. 4. (02 April 2004), pp. 985-999. by Florence Tama, Osamu Miyashita, Charles L. Brooks III posted by 3 people aqeel yongzhao TSRI_MGL
	Dynamite: a simple way to gain insight into protein motions. [My Copy] Acta crystallographica. Section D, Biological crystallography, Vol. 60, No. Pt 12 Pt 1. (01 December 2004), pp. 2280-2287. by C. Paul Barrett, Benjamin A. Hall, Martin E. Noble posted by 6 people arifor dimka aqeel yongzhao choonpeng TSRI_MGL
	Automated protein structure calculation from NMR data [My Copy] Journal of Biomolecular NMR, Vol. 43, No. 3. (1 March 2009), pp. 131-143. by Mike Williamson, C. Craven posted by 2 people babakap lna
	Automated assignment of NMR chemical shifts using peak-particle dynamics simulation with the DYNASSIGN algorithm [My Copy] Journal of Biomolecular NMR, Vol. 43, No. 2. (1 February 2009), pp. 97-109. by Roland Schmucki, Shigeyuki Yokoyama, Peter Güntert posted by 2 people babakap lna
	Reconsidering complete search algorithms for protein backbone NMR assignment [My Copy] Bioinformatics, Vol. 21, No. suppl_2. (1 September 2005), pp. ii230-236. by Olga Vitek, Chris Bailey-Kellogg, Bruce Craig, Paul Kuliniewicz, Jan Vitek posted by 3 people babakap lna Dartmouth Computer Science
	Torsion angle dynamics for NMR structure calculation with the new program D? [My Copy] Journal of Molecular Biology, Vol. 273, No. 1. (17 October 1997), pp. 283-298. by P. Güntert posted by 6 people dsmueller ras stharward babakap BragilMassoud lna
	Conformational Changes Observed in Enzyme Crystal Structures upon Substrate Binding [My Copy] Journal of Molecular Biology, Vol. 346, No. 1. (11 February 2005), pp. 21-28. by A. Gutteridge, J. Thornton posted by 10 people nickolay boris_aguilar carlosjavierna baaden lna yongzhao alexg gbart noby TSRI_MGL
	Side-chain flexibility in proteins upon ligand binding. [My Copy] Proteins, Vol. 39, No. 3. (15 May 2000), pp. 261-268. by R. Najmanovich, J. Kuttner, V. Sobolev, M. Edelman posted by 7 people dgruiz radestock lna yongzhao blackbart TSRI_MGL LamBras
	Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function [My Copy] Journal of Computational Chemistry, Vol. 19, No. 14. (6 January 1998), pp. 1639-1662. by Garrett M. Morris, David S. Goodsell, Robert S. Halliday, et al.Ruth Huey, William E. Hart, Richard K. Belew, Arthur J. Olson posted by 26 people trishul nickolay npt11tpn jamalex joule lna Lombardo_7 karinaecomp oteri A_Coletta_Thesis Chang group arlam dgruiz nachtalp P2324548 yongzhao peprovy tovrstra papatonyhill schlauchi carlescorbi TSRI_MGL middledomain LamBras andreramme UVA_mag_res
	Improved methods for building protein models in electron density maps and the location of errors in these models [My Copy] Acta Crystallographica Section A, Vol. 47, No. 2. (Mar 1991), pp. 110-119. by T. A. Jones, J. Y. Zou, S. W. Cowan, M. Kjeldgaard posted by 1 person aqeel
	Molecular Electron Microscopy: State of the Art and Current Challenges [My Copy] ACS Chemical Biology, Vol. 3, No. 5. (1 May 2008), pp. 268-281. by Henning Stahlberg, Thomas Walz posted by 2 people aqeel zeldin
	Flexible Fitting of High-Resolution X-Ray Structures into Cryoelectron Microscopy Maps Using Biased Molecular Dynamics Simulations☆ [My Copy] Biophysical Journal, Vol. 95, No. 12. (15 December 2008), pp. 5692-5705. by Marek Orzechowski, Florence Tama posted by 1 person aqeel
	Biased coarse-grained molecular dynamics simulation approach for flexible fitting of X-ray structure into cryo electron microscopy maps [My Copy] Journal of Structural Biology (02 October 2009) by Ivan Grubisic, Maxim N. Shokhirev, Marek Orzechowski, Osamu Miyashita, Florence Tama posted by 2 people aqeel paulschlesinger
	Molecular recognition by induced fit: how fit is the concept? [My Copy] News in physiological sciences : an international journal of physiology produced jointly by the International Union of Physiological Sciences and the American Physiological Society, Vol. 16 (August 2001), pp. 171-173. by H. R. Bosshard posted by 1 person aqeel
	An NMA-guided path planning approach for computing large-amplitude conformational changes in proteins. [My Copy] Proteins, Vol. 70, No. 1. (1 January 2008), pp. 131-143. by S. Kirillova, J. Cortés, A. Stefaniu, T. Siméon posted by 1 person aqeel
	Ligand-induced conformational changes in ras p21: a normal mode and energy minimization analysis [My Copy] Journal of Molecular Biology, Vol. 274, No. 1. (21 November 1997), pp. 114-131. by J. Ma posted by 1 person aqeel
	Iterative cluster-NMA: A tool for generating conformational transitions in proteins. [My Copy] Proteins, Vol. 74, No. 3. (15 February 2009), pp. 760-776. by A. D. Schuyler, R. L. Jernigan, P. K. Qasba, B. Ramakrishnan, G. S. Chirikjian posted by 3 people baker-group sobolevnrm aqeel
	cAMP-dependent protein kinase: crystallographic insights into substrate recognition and phosphotransfer. [My Copy] Protein science : a publication of the Protein Society, Vol. 3, No. 2. (February 1994), pp. 176-187. by Madhusudan, E. A. Trafny, N. H. Xuong, et al.J. A. Adams, L. F. Ten Eyck, S. S. Taylor, J. M. Sowadski posted by 1 person aqeel
	Crystal structure of Yersinia protein tyrosine phosphatase at 2.5 A and the complex with tungstate [My Copy] Nature, Vol. 370, No. 6490. (1994), pp. 571-575. by Jeanne A. Stuckey, Heidi L. Schubert, Eric B. Fauman, Zhong-Yin Zhang, Jack E. Dixon, Mark A. Saper posted by 1 person aqeel
	Freezing immunoglobulins to see them move. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 17. (27 April 2004), pp. 6466-6471. by L. Bongini, D. Fanelli, F. Piazza, P. De Los Rios, S. Sandin, U. Skoglund posted by 1 person aqeel
	Contrasting IgG Structures Reveal Extreme Asymmetry and Flexibility [My Copy] Journal of Molecular Biology, Vol. 319, No. 1. (24 May 2002), pp. 9-18. by E. Saphire, R. Stanfield, M. Maxcrispin, et al.P. Parren, P. Rudd, R. Dwek, D. Burton, I. Wilson posted by 1 person aqeel
	Fluctuation and Cross-correlation Analysis of Protein Motions Observed in Nanosecond Molecular Dynamics Simulations [My Copy] Journal of Molecular Biology, Vol. 252, No. 4. (29 September 1995), pp. 492-503. by P. Hünenberger posted by 2 people bmduggan aqeel
	Fluctuations and correlations in crystalline protein dynamics: a simulation analysis of staphylococcal nuclease. [My Copy] Biophysical journal, Vol. 88, No. 4. (April 2005), pp. 2554-2563. by L. Meinhold, J. C. Smith posted by 1 person aqeel
	Systematic Multiscale Parameterization of Heterogeneous Elastic Network Models of Proteins [My Copy] Biophys. J., Vol. 95, No. 9. (1 November 2008), pp. 4183-4192. by Edward Lyman, Jim Pfaendtner, Gregory A. Voth posted by 3 people baker-group sobolevnrm aqeel
	A Naturally Occurring Extracellular α−β Clasp Contributes to Stabilization of β3 Integrins in a Bent, Resting Conformation† [My Copy] Biochemistry, Vol. 47, No. 44. (4 November 2008), pp. 11616-11624. by Anthony N. Vomund, Sarah Stuhlsatz-Krouper, Julie Dimitry, Yuhua Song, William A. Frazier posted by 2 people choonpeng aqeel
	Fitting Low-Resolution Cryo-EM Maps of Proteins Using Constrained Geometric Simulations [My Copy] Biophys. J., Vol. 94, No. 5. (1 March 2008), pp. 1613-1621. by Craig C. Jolley, Stephen A. Wells, Petra Fromme, M. F. Thorpe posted by 1 person aqeel
	Identification of Specific Interactions that Drive Ligand-induced Closure in Five Enzymes with Classic Domain Movements [My Copy] Journal of Molecular Biology, Vol. 339, No. 4. (June 2004), pp. 1001-1021. by S. Hayward posted by 1 person aqeel
	Radius of gyration as an indicator of protein structure compactness [My Copy] Molecular Biology, Vol. 42, No. 4. (2008), pp. 623-628. by M. Lobanov, N. Bogatyreva, O. Galzitskaya posted by 1 person aqeel
	Multiscale methods for macromolecular simulations [My Copy] Current Opinion in Structural Biology, Vol. 18, No. 5. (October 2008), pp. 630-640. by P. Sherwood, B. Brooks, M. Sansom posted by 8 people jonathancooper xavierprat flbarroso carlk aqeel choonpeng McCammon jmccammon
	Modeling side-chain conformation [My Copy] Current Opinion in Structural Biology, Vol. 6, No. 2. (April 1996), pp. 217-221. by M. Vásquez posted by 1 person aqeel
	Relating sequence evolution of HIV1-protease to its underlying molecular mechanics [My Copy] Gene, Vol. 422, No. 1-2. (01 October 2008), pp. 30-36. by K. Hamacher posted by 2 people mijogiffin aqeel
	Coarse-grained dynamics of the receiver domain of NtrC: fluctuations, correlations and implications for allosteric cooperativity. [My Copy] Proteins, Vol. 73, No. 1. (October 2008), pp. 218-227. by M. S. Liu, B. D. Todd, S. Yao, Z. P. Feng, R. S. Norton, R. J. Sadus posted by 1 person aqeel
	CONFORMATIONAL TRANSITION PATHWAYS EXPLORED BY MONTE CARLO SIMULATION INTEGRATED WITH COLLECTIVE MODES [My Copy] Biophys. J. (1 August 2008), biophysj.107.128447. by Nigar Kantarci-Carsibasi, Turkan Haliloglu, Pemra Doruker posted by 7 people baker-group sobolevnrm paulschlesinger oteri viktor21614 sunhwan aqeel
	Flexible ligand docking to multiple receptor conformations: a practical alternative. [My Copy] Current opinion in structural biology, Vol. 18, No. 2. (April 2008), pp. 178-184. by M. Totrov, R. Abagyan posted by 7 people klexa oteri structural_bioinformatics McCammon Bioinformatics barry aqeel
	Topologically Based Multipolar Reconstruction of Electrostatic Interactions in Multiscale Simulations of Proteins [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 8. (1 August 2008), pp. 1378-1385. by Michele Cascella, Marilisa A. Neri, Paolo Carloni, Matteo D. Peraro posted by 2 people rdf aqeel
	Energy landscape along an enzymatic reaction trajectory: hinges or cracks? [My Copy] HFSP Journal, Vol. 2, No. 2. (2008), pp. 61-64. by Paul C. Whitford, José N. Onuchic, Peter G. Wolynes posted by 3 people barry sunhwan aqeel
	Use of normal modes for structural modeling of proteins: the case study of rat heme oxygenase 1 [My Copy] European Biophysics Journal, Vol. 37, No. 7. (2008), pp. 1157-1165. by Jean-Didier Marechal, David Perahia posted by 1 person aqeel
	Key interactions in integrin ectodomain responsible for global conformational change detected by elastic network normal-mode analysis. [My Copy] Biophysical journal, Vol. 95, No. 6. (15 September 2008), pp. 2895-2908. by Atsushi Matsumoto, Tetsuji Kamata, Junichi Takagi, Kenji Iwasaki, Kei Yura posted by 3 people tprpip choonpeng aqeel
	Principles of flexible protein-protein docking [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 73, No. 2. (2008), pp. 271-289. by Nelly Andrusier, Efrat Mashiach, Ruth Nussinov, Haim J. Wolfson posted by 5 people bicko aqeel structural_bioinformatics csrocha LamBras
	Target Flexibility: An Emerging Consideration in Drug Discovery and Design. [My Copy] Journal of medicinal chemistry (12 September 2008) by Pietro Cozzini, Glen E. Kellogg, Francesca Spyrakis, et al.Donald J. Abraham, Gabriele Costantino, Andrew Emerson, Francesca Fanelli, Holger Gohlke, Leslie A. Kuhn, Garrett M. Morris, Modesto Orozco, Thelma A. Pertinhez, Menico Rizzi, Christoph A. Sotriffer posted by 3 people aqeel reyez higueruelo
	Geometric criteria of hydrogen bonds in proteins and identification of `bifurcated' hydrogen bonds [My Copy] Protein Engineering (May 2002), pp. 359-363. by Ivan Y. Torshin, Irene T. Weber, Robert W. Harrison posted by 2 people aqeel carterb
	Docking and High Throughput Docking: Successes and the Challenge of Protein Flexibility [My Copy] Current Computer - Aided Drug Design, Vol. 4, No. 3. (September 2008), pp. 221-234. by Claudio N. Cavasotto, Narender Singh posted by 1 person aqeel
	Evolutionary conservation of protein vibrational dynamics. [My Copy] Gene, Vol. 422, No. 1-2. (1 October 2008), pp. 7-13. by S. Maguid, S. Fernandez-Alberti, J. Echave posted by 3 people edvin aqeel gisle
	Intercellular Adhesion Molecule-3 Binding of Integrin alphaLbeta2 Requires Both Extension and Opening of the Integrin Headpiece [My Copy] J Immunol, Vol. 180, No. 7. (1 April 2008), pp. 4793-4804. by Xiao-Yan Tang, Yan-Feng Li, Suet-Mien Tan posted by 1 person aqeel
	Transmembrane and cytoplasmic domains in integrin activation and protein-protein interactions (Review) [My Copy] Molecular Membrane Biology, Vol. 25, No. 5. (2008), pp. 376-387. by Kate L. Wegener, Iain D. Campbell posted by 1 person aqeel
	Allosteric Communication in Myosin V: From Small Conformational Changes to Large Directed Movements [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000129. by M. Cecchini, A. Houdusse, M. Karplus posted by 3 people okapi aqeel barry
	Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 32. (12 August 2008), pp. 11182-11187. by Kei-ichi Okazaki, Shoji Takada posted by 11 people oteri bmduggan xdeupi okapi aqeel raik ruvido structural_bioinformatics McCammon barry zwang
	Alternating evolutionary pressure in a genetic algorithm facilitates protein model selection [My Copy] BMC Structural Biology, Vol. 8 (01 August 2008), 34. by Marc N. Offman, Alex L. Tournier, Paul A. Bates posted by 1 person aqeel
	Functional and computational studies of the ligand-associated metal binding site of beta3 integrins. [My Copy] Proteins, Vol. 71, No. 4. (June 2008), pp. 1779-1791. by M. Murcia, M. Jirouskova, J. Li, B. S. Coller, M. Filizola posted by 1 person aqeel
	Prediction by Graph Theoretic Measures of Structural Effects in Proteins Arising from Non-Synonymous Single Nucleotide Polymorphisms [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (25 July 2008), e1000135. by Tammy M. Cheng, Yu-En Lu, Michele Vendruscolo, Pietro Lio', Tom L. Blundell posted by 6 people AbnerCYH aqeel aramesh2 GeeSharpMinor aalibes GustavoLacerda
	The Croonian lecture 2006. Structure of the living cell. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 363, No. 1502. (27 July 2008), pp. 2379-2391. by I. D. Campbell posted by 1 person aqeel
	Recognition-induced conformational changes in protein-protein docking. [My Copy] Current pharmaceutical biotechnology, Vol. 9, No. 2. (April 2008), pp. 77-86. by M. F. Lensink, R. Méndez posted by 2 people flbarroso aqeel
	Einfluss der Configuration auf die Wirkung der Enzyme [My Copy] Berichte der deutschen chemischen Gesellschaft, Vol. 27, No. 3. (1894), pp. 2985-2993. by Emil Fischer posted by 2 people aqeel nigham
	A Unification of the Elastic Network Model and the Gaussian Network Model for Optimal Description of Protein Conformational Motions and Fluctuations [My Copy] Biophys. J., Vol. 94, No. 10. (15 May 2008), pp. 3853-3857. by Wenjun Zheng posted by 2 people simone aqeel
	Large scale motions in a biosensor protein glucose oxidase: A combined approach by QENS, normal mode analysis, and molecular dynamics studies [My Copy] Biopolymers, Vol. 89, No. 7. (2008), pp. 582-594. by Sujit S. Tatke, Chun K. Loong, Nicolas D'Souza, Richard T. Schoephoerster, M. Prabhakaran posted by 1 person aqeel
	Evolutionary divergence of protein structure: The linearly forced elastic network model [My Copy] Chemical Physics Letters, Vol. 457, No. 4-6. (27 May 2008), pp. 413-416. by Julián Echave posted by 1 person aqeel
	Collective motions of rigid fragments in protein structures from smoothed electron density distributions. [My Copy] Journal of computational chemistry, Vol. 29, No. 9. (15 July 2008), pp. 1472-1489. by L. Leherte, D. P. Vercauteren posted by 1 person aqeel
	Proteins: coexistence of stability and flexibility. [My Copy] Physical review letters, Vol. 100, No. 20. (23 May 2008) by S. Reuveni, R. Granek, J. Klafter posted by 1 person aqeel
	Protein−Ligand Docking Accounting for Receptor Side Chain and Global Flexibility in Normal Modes: Evaluation on Kinase Inhibitor Cross Docking [My Copy] J. Med. Chem., Vol. 51, No. 12. (26 June 2008), pp. 3499-3506. by Andreas May, Martin Zacharias posted by 2 people higueruelo aqeel
	MinActionPath: maximum likelihood trajectory for large-scale structural transitions in a coarse-grained locally harmonic energy landscape. [My Copy] Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007) by J. Franklin, P. Koehl, S. Doniach, M. Delarue posted by 1 person aqeel
	Interaction of Anesthetics with Open and Closed Conformations of a Potassium Channel Studied via Molecular Dynamics and Normal Mode Analysis [My Copy] Biophys. J., Vol. 94, No. 11. (1 June 2008), pp. 4260-4269. by Satyavani Vemparala, Carmen Domene, Michael L. Klein posted by 2 people mengcite aqeel
	REACH Coarse-Grained Biomolecular Simulation: Transferability between Different Protein Structural Classes [My Copy] Biophys. J. (9 May 2008), biophysj.108.131714. by Kei Moritsugu, Jeremy C. Smith posted by 10 people barry baker-group sobolevnrm A_Coletta_Thesis paulschlesinger choonpeng aqeel jmccammon McCammon rok
	Stereochemical Criteria for Polypeptide and Protein Chain ConformationsII. Allowed Conformations for a Pair of Peptide Units [My Copy] Biophysical Journal, Vol. 5, No. 6. (1 November 1965), pp. 909-933. by C. Ramakrishnan posted by 3 people Diego_Prada allmensch aqeel