azazello's Top Recommendations

These recommendations were last updated about an hour ago.

	Global Discriminative Learning for Higher-Accuracy Computational Gene Prediction [My Copy] PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e54. by Axel Bernal, Koby Crammer, Artemis Hatzigeorgiou, Fernando Pereira posted by 8 people dakelley dpollard wenhan zwang Bioinformatics EisenLab acarbo alexl
	Symbiotic gut microbes modulate human metabolic phenotypes [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 6. (12 February 2008), pp. 2117-2122. by Min Li, Baohong Wang, Menghui Zhang, et al.Mattias Rantalainen, Shengyue Wang, Haokui Zhou, Yan Zhang, Jian Shen, Xiaoyan Pang, Meiling Zhang, Hua Wei, Yu Chen, Haifeng Lu, Jian Zuo, Mingming Su, Yunping Qiu, Wei Jia, Chaoni Xiao, Leon M. Smith, Shengli Yang, Elaine Holmes, Huiru Tang, Guoping Zhao, Jeremy K. Nicholson, Lanjuan Li, Liping Zhao posted by 12 people nicholso eehsanipour cmzmasek taylor73 idoerg bluto R.E.A.D Zephyrus guhjy wenhan madhadron lp2
	Next-generation DNA sequencing. [My Copy] Nature biotechnology, Vol. 26, No. 10. (09 October 2008), pp. 1135-1145. by Jay Shendure, Hanlee Ji posted by 50 people Jporci daforerog dchughes hzoltan cthachuk giovenko heliopais seb1 installe niallhaslam Vincent_Rouilly rschulz fishtank bluto Annab katholt jmcq michaelbarton n00c jfr dna nzm farhat idoerg mhz mmartin antonkratz jbhiatt yupu Bioinformatics behindtherabbit guhjy Pascalichouchou frohike dakelley ptrobajo zwang Roswell Cancer Crosstalk Zephyrus psique natstreet druvus nuin alexknight reyez dbk Oxford Virology wsjames pengchy GeeSharpMinor
	AUGUSTUS: ab initio prediction of alternative transcripts [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_2. (1 July 2006), pp. W435-439. by Mario Stanke, Oliver Keller, Irfan Gunduz, Alec Hayes, Stephan Waack, Burkhard Morgenstern posted by 3 people natstreet wenhan alexl
	Gene prediction: compare and CONTRAST [My Copy] Genome Biology, Vol. 8, No. 12. (2007) by Paul Flicek posted by 7 people orzenil albert_swart wenhan dewaldron yoanjacquemin Borelli alexl
	Steady progress and recent breakthroughs in the accuracy of automated genome annotation [My Copy] Nat Rev Genet, Vol. 9, No. 1. (January 2008), pp. 62-73. by Michael R. Brent posted by 11 people bcondon timflutre druvus guhjy dchughes jermth wenhan renatomilani drbal alexl GustavoLacerda
	Conrad: Gene prediction using conditional random fields [My Copy] Genome Res., Vol. 17, No. 9. (1 September 2007), pp. 1389-1398. by David Decaprio, Jade P. Vinson, Matthew D. Pearson, Philip Montgomery, Matthew Doherty, James E. Galagan posted by 5 people GustavoLacerda indigoviolet wenhan EisenLab alexl
	Gene prediction with a hidden Markov model and a new intron submodel. [My Copy] Bioinformatics (Oxford, England), Vol. 19 Suppl 2 (October 2003) by Mario Stanke, Stephan Waack posted by 9 people rshe jmartin49 GustavoLacerda indigoviolet stajich alexl wenhan EisenLab Mycology
	Improving the Caenorhabditis elegans genome annotation using machine learning. [My Copy] PLoS Comput Biol, Vol. 3, No. 2. (23 February 2007) by G. Rätsch, S. Sonnenburg, J. Srinivasan, et al.H. Witte, K. R. Müller, R. J. Sommer, B. Schölkopf posted by 6 people thegoose2 C. elegans / WormBase tharris balajis alexl wenhan
	Gene finding in novel genomes [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (14 May 2004), 59. by Ian Korf posted by 9 people druvus jmartin49 LeightonP indigoviolet wenhan GustavoLacerda EisenLab cmzmasek alexl
	SpliceMachine: predicting splice sites from high-dimensional local context representations [My Copy] Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1332-1338. by Sven Degroeve, Yvan Saeys, Bernard De Baets, Pierre Rouze, Yves Van de Peer posted by 3 people natstreet alexl wenhan
	Comparative Metagenomics Revealed Commonly Enriched Gene Sets in Human Gut Microbiomes [My Copy] DNA Res, Vol. 14, No. 4. (1 January 2007), pp. 169-181. by Ken Kurokawa, Takehiko Itoh, Tomomi Kuwahara, et al.Kenshiro Oshima, Hidehiro Toh, Atsushi Toyoda, Hideto Takami, Hidetoshi Morita, Vineet K. Sharma, Tulika P. Srivastava, Todd D. Taylor, Hideki Noguchi, Hiroshi Mori, Yoshitoshi Ogura, Dusko S. Ehrlich, Kikuji Itoh, Toshihisa Takagi, Yoshiyuki Sakaki, Tetsuya Hayashi, Masahira Hattori posted by 10 people cmzmasek esyoun skembel jmeppley wenhan carpi melissa_wos vrich bluto FmuO
	Identification of protein coding regions by database similarity search. [My Copy] Nat Genet, Vol. 3, No. 3. (March 1993), pp. 266-272. by W. Gish, D. J. States posted by 4 people indigoviolet bluto EisenLab wenhan
	Novel phylogenetic studies of genomic sequence fragments derived from uncultured microbe mixtures in environmental and clinical samples. [My Copy] DNA Res, Vol. 12, No. 5. (2005), pp. 281-290. by T. Abe, H. Sugawara, M. Kinouchi, S. Kanaya, T. Ikemura posted by 2 people bluto wenhan
	Microbial gene identification using interpolated Markov models [My Copy] Nucl. Acids Res., Vol. 26, No. 2. (15 January 1998), pp. 544-548. by S. L. Salzberg, A. L. Delcher, S. Kasif, O. White posted by 9 people tfuji Ayest ziquje gg bnchakraborty bluto jguinney wenhan MBLAB
	The Atlas Genome Assembly System [My Copy] Genome Research, Vol. 14, No. 4. (April 2004), pp. 721-732. by Paul Havlak, Rui Chen, K. James Durbin, et al.Amy Egan, Yanru Ren, Xing-Zhi Song, George M. Weinstock, Richard A. Gibbs posted by 5 people aprasad dakelley orzenil wenhan Neeperando
	Whole-genome sequence assembly for mammalian genomes: Arachne 2. [My Copy] Genome Res, Vol. 13, No. 1. (January 2003), pp. 91-96. by D. B. Jaffe, J. Butler, S. Gnerre, et al.E. Mauceli, K. Lindblad-Toh, J. P. Mesirov, M. C. Zody, E. S. Lander posted by 9 people jmanning2k orzenil idoerg bpb indigoviolet AaronDarling wenhan farhat EisenLab
	MetaGene: prokaryotic gene finding from environmental genome shotgun sequences [My Copy] Nucl. Acids Res., Vol. 34, No. 19. (14 November 2006), pp. 5623-5630. by Hideki Noguchi, Jungho Park, Toshihisa Takagi posted by 7 people dakelley Thaverkamp iSEEM jlgreen jmeppley alexl mcox
	TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 56. by Naryttza Diaz, Lutz Krause, Alexander Goesmann, Karsten Niehaus, Tim Nattkemper posted by 7 people halinat esyoun dakelley iSEEM jonathaneisen bluto jmeppley
	IMG/M: a data management and analysis system for metagenomes. [My Copy] Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008) by V. M. Markowitz, N. N. Ivanova, E. Szeto, et al.K. Palaniappan, K. Chu, D. Dalevi, I. M. Chen, Y. Grechkin, I. Dubchak, I. Anderson, A. Lykidis, K. Mavromatis, P. Hugenholtz, N. C. Kyrpides posted by 5 people idoerg guhjy jmeppley Thaverkamp alexl
	Microbial community gene expression in ocean surface waters [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 10. (11 March 2008), pp. 3805-3810. by Jorge Frias-Lopez, Yanmei Shi, Gene W. Tyson, et al.Maureen L. Coleman, Stephan C. Schuster, Sallie W. Chisholm, Edward F. DeLong posted by 14 people hwright druvus elbrodie idoerg bluto skembel mcox tmmurali vaulot mjetten microbiology_nijmegen jlgreen Green Lab iSEEM
	A statistical toolbox for metagenomics: assessing functional diversity in microbial communities [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (23 January 2008), 34. by Patrick Schloss, Jo Handelsman posted by 18 people ajsferreira hwright orzenil taylor73 idoerg jonathaneisen skembel druvus jmeppley Microbial-Ecology Thaverkamp alexisfjdufresne mjetten anammox microbiology_nijmegen bluto djkt iSEEM
	Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products. [My Copy] Chem Biol, Vol. 5, No. 10. (October 1998) by J. Handelsman, M. R. Rondon, S. F. Brady, J. Clardy, R. M. Goodman posted by 3 people idoerg jmeppley bluto
	Metaproteomics: studying functional gene expression in microbial ecosystems. [My Copy] Trends Microbiol, Vol. 14, No. 2. (February 2006), pp. 92-97. by P. Wilmes, P. L. Bond posted by 9 people idoerg alonexiu Yanno knaseanka jmeppley bluto nitiniitk barberan mcox
	Phylogenetic identification and in situ detection of individual microbial cells without cultivation. [My Copy] Microbiol Rev, Vol. 59, No. 1. (March 1995), pp. 143-169. by R. I. Amann, W. Ludwig, K. H. Schleifer posted by 6 people idoerg skato_toyaku knaseanka jmeppley bluto mcox
	Cloning the Soil Metagenome: a Strategy for Accessing the Genetic and Functional Diversity of Uncultured Microorganisms [My Copy] Appl. Environ. Microbiol., Vol. 66, No. 6. (1 June 2000), pp. 2541-2547. by Michelle R. Rondon, Paul R. August, Alan D. Bettermann, et al.Sean F. Brady, Trudy H. Grossman, Mark R. Liles, Kara A. Loiacono, Berkley A. Lynch, Ian A. Macneil, Charles Minor, Choi L. Tiong, Michael Gilman, Marcia S. Osburne, Jon Clardy, Jo Handelsman, Robert M. Goodman posted by 7 people idoerg jmeppley eweaver bluto dmlai mcox vrich
	Swift: primary data analysis for the Illumina Solexa sequencing platform [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2194-2199. by Nava Whiteford, Tom Skelly, Christina Curtis, et al.Matt E. Ritchie, Andrea Lohr, Alexander W. Zaranek, Irina Abnizova, Clive Brown posted by 26 people heliopais hzoltan dakelley sotacam lh49 djkt rtogawa cassj Bioinformatics dswan torfinnnome rschulz BergmanLab natstreet druvus jasontsai jmeppley SIMR bioinformatics ghattem nuin polivares n00c aprasad Journal picks niallhaslam idoerg
	TopHat: discovering splice junctions with RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1105-1111. by Cole Trapnell, Lior Pachter, Steven L. Salzberg posted by 27 people cthachuk hzoltan jwfoley heliopais dakelley druvus GustavoLacerda stubrown BergmanLab polivares torfinnnome jmcq mtagaya jonilaserson gdb guhjy ThomasDOtto n00c SIMR bioinformatics ghattem xingxu djkt vplagnol bertelsen natstreet idoerg vmsr
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven Salzberg posted by 41 people jfr hzoltan cthachuk darshan fstrozzi adijr debasis bozdagd BergmanLab polivares torfinnnome n00c talponer jmcq rschulz SIMR bioinformatics ghattem operon humburg idonaldson mmartin iSEEM skembel dquest heliopais djkt GeeSharpMinor bertelsen darian Notre Dame Bioinformatics semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus
	QSRA: a quality-value guided de novo short read assembler. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by D. W. Bryant, W. K. Wong, T. C. Mockler posted by 13 people hzoltan GustavoLacerda GeeSharpMinor Bioinformatics jfr n00c dakelley pengchy natstreet Mycology stajich idoerg druvus
	Get the most out of your metagenome: computational analysis of environmental sequence data [My Copy] Current Opinion in Microbiology, Vol. 10, No. 5. (October 2007), pp. 490-498. by Jeroen Raes, Konrad U. Foerstner, Peer Bork posted by 8 people ajsferreira Orengo Group Journal Picks CorinYeats dakelley idoerg Pascalichouchou druvus iSEEM
	Phylogenetic classification of short environmental DNA fragments [My Copy] Nucl. Acids Res., Vol. 36, No. 7. (19 February 2008), pp. gkn038-2239. by Lutz Krause, Naryttza N. Diaz, Alexander Goesmann, et al.Scott Kelley, Tim W. Nattkemper, Forest Rohwer, Robert A. Edwards, Jens Stoye posted by 8 people esyoun ematsen dakelley idoerg sriesenfeld skembel hpaces vrich
	Fragment assembly with short reads. [My Copy] Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 2067-2074. by M. Chaisson, P. Pevzner, H. Tang posted by 5 people idoerg dakelley orzenil bioinfo nedwards
	Method to determine the reading frame of a protein from the purine/pyrimidine genome sequence and its possible evolutionary justification. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 78, No. 3. (March 1981), pp. 1596-1600. by J. C. Shepherd posted by 1 person wenhan
	Mining Genes in DNA Using GeneScout [My Copy] by Michael M. Yin, Jason T. L. Wang posted by 2 people GustavoLacerda wenhan
	Identification of new human cadherin genes using a combination of protein motif search and gene finding methods. [My Copy] Journal of molecular biology, Vol. 337, No. 2. (19 March 2004), pp. 307-317. by J. C. Höng, N. V. Ivanov, P. Hodor, et al.M. Xia, N. Wei, R. Blevins, D. Gerhold, M. Borodovsky, Y. Liu posted by 1 person wenhan
	Effects of choice of DNA sequence model structure on gene identification accuracy. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 7. (1 May 2004), pp. 993-1005. by R. K. Azad, M. Borodovsky posted by 1 person wenhan
	Probabilistic methods of identifying genes in prokaryotic genomes: connections to the HMM theory. [My Copy] Briefings in bioinformatics, Vol. 5, No. 2. (June 2004), pp. 118-130. by R. K. Azad, M. Borodovsky posted by 2 people jmartin49 wenhan
	Three new isoforms of Caenorhabditis elegans UNC-89 containing MLCK-like protein kinase domains. [My Copy] Journal of molecular biology, Vol. 342, No. 1. (3 September 2004), pp. 91-108. by T. M. Small, K. M. Gernert, D. B. Flaherty, K. B. Mercer, M. Borodovsky, G. M. Benian posted by 4 people thegoose2 C. elegans / WormBase tharris wenhan
	Identification of proteins associated with murine cytomegalovirus virions. [My Copy] Journal of virology, Vol. 78, No. 20. (October 2004), pp. 11187-11197. by L. M. Kattenhorn, R. Mills, M. Wagner, et al.A. Lomsadze, V. Makeev, M. Borodovsky, H. L. Ploegh, B. M. Kessler posted by 1 person wenhan
	Protein secondary structure prediction with semi Markov HMMs. [My Copy] Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference, Vol. 4 (2004), pp. 2964-2967. by Z. Aydin, Y. Altunbasak, M. Borodovsky posted by 1 person wenhan
	Multiple testing in large-scale contingency tables: inferring patterns of pair-wise amino acid association in beta-sheets. [My Copy] International journal of bioinformatics research and applications, Vol. 2, No. 2. (2006), pp. 193-217. by S. B. Kim, K. L. Tsui, M. Borodovsky posted by 1 person wenhan
	Probabilistic models for biological sequences: selection and Maximum Likelihood estimation. [My Copy] International journal of bioinformatics research and applications, Vol. 2, No. 3. (2006), pp. 305-324. by S. Ekisheva, M. Borodovsky posted by 1 person wenhan
	Convergence rate estimation for the TKF91 model of biological sequence length evolution. [My Copy] Mathematical biosciences, Vol. 209, No. 2. (October 2007), pp. 470-485. by A. Y. Mitrophanov, M. Borodovsky posted by 1 person wenhan
	Control of Streptococcus pyogenes virulence: modeling of the CovR/S signal transduction system. [My Copy] Journal of theoretical biology, Vol. 246, No. 1. (7 May 2007), pp. 113-128. by A. Y. Mitrophanov, G. Churchward, M. Borodovsky posted by 1 person wenhan
	Recognizing exons in genomic sequence using GRAIL II. [My Copy] Genetic engineering, Vol. 16 (1994), pp. 241-253. by Y. Xu, R. Mural, M. Shah, E. Uberbacher posted by 1 person wenhan
	Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes. [My Copy] Bioinformatics (Oxford, England), Vol. 15, No. 10. (October 1999), pp. 776-784. by A. Wagner posted by 1 person wenhan
	Gene structure prediction by spliced alignment of genomic DNA with protein sequences: increased accuracy by differential splice site scoring. [My Copy] Journal of molecular biology, Vol. 297, No. 5. (14 April 2000), pp. 1075-1085. by J. Usuka, V. Brendel posted by 2 people rshe wenhan
	Estimation and reliability of molecular sequence alignments. [My Copy] Biometrics, Vol. 51, No. 1. (March 1995), pp. 100-113. by J. L. Thorne, G. A. Churchill posted by 1 person wenhan
	A probabilistic model for detecting coding regions in DNA sequences. [My Copy] IMA journal of mathematics applied in medicine and biology, Vol. 11, No. 3. (1994), pp. 149-160. by A. Thomas, M. H. Skolnick posted by 1 person wenhan
	Gene-finding approaches for eukaryotes. [My Copy] Genome research, Vol. 10, No. 4. (April 2000), pp. 394-397. by G. D. Stormo posted by 1 person wenhan
	Computer methods to locate signals in nucleic acid sequences. [My Copy] Nucleic acids research, Vol. 12, No. 1 Pt 2. (11 January 1984), pp. 505-519. by R. Staden posted by 1 person wenhan
	Target Explorer: An automated tool for the identification of new target genes for a specified set of transcription factors. [My Copy] Nucleic acids research, Vol. 31, No. 13. (1 July 2003), pp. 3589-3592. by A. Sosinsky, C. P. Bonin, R. S. Mann, B. Honig posted by 3 people wenhan oelemento isimpson
	Predicting internal exons by oligonucleotide composition and discriminant analysis of spliceable open reading frames. [My Copy] Nucleic acids research, Vol. 22, No. 24. (11 December 1994), pp. 5156-5163. by V. V. Solovyev, A. A. Salamov, C. B. Lawrence posted by 1 person wenhan
	Identification of protein coding regions in genomic DNA. [My Copy] Journal of molecular biology, Vol. 248, No. 1. (21 April 1995), pp. 1-18. by E. E. Snyder, G. D. Stormo posted by 1 person wenhan
	Leaderless transcripts of the crenarchaeal hyperthermophile Pyrobaculum aerophilum. [My Copy] Journal of molecular biology, Vol. 309, No. 2. (1 June 2001), pp. 347-360. by M. M. Slupska, A. G. King, S. Fitz-Gibbon, J. Besemer, M. Borodovsky, J. H. Miller posted by 1 person wenhan
	Finding prokaryotic genes by the 'frame-by-frame' algorithm: targeting gene starts and overlapping genes. [My Copy] Bioinformatics (Oxford, England), Vol. 15, No. 11. (November 1999), pp. 874-886. by A. M. Shmatkov, A. A. Melikyan, F. L. Chernousko, M. Borodovsky posted by 1 person wenhan
	Bayesian segmentation of protein secondary structure. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 7, No. 1-2. (r 2000), pp. 233-248. by S. C. Schmidler, J. S. Liu, D. L. Brutlag posted by 1 person wenhan
	GeneSeqer@PlantGDB: Gene structure prediction in plant genomes. [My Copy] Nucleic acids research, Vol. 31, No. 13. (1 July 2003), pp. 3597-3600. by S. D. Schlueter, Q. Dong, V. Brendel posted by 1 person wenhan
	A decision tree system for finding genes in DNA. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 5, No. 4. (1998), pp. 667-680. by S. Salzberg, A. L. Delcher, K. H. Fasman, J. Henderson posted by 1 person wenhan
	Ab initio gene finding in Drosophila genomic DNA. [My Copy] Genome research, Vol. 10, No. 4. (April 2000), pp. 516-522. by A. A. Salamov, V. V. Solovyev posted by 1 person wenhan
	EcoGene: a genome sequence database for Escherichia coli K-12. [My Copy] Nucleic acids research, Vol. 28, No. 1. (1 January 2000), pp. 60-64. by K. E. Rudd posted by 1 person wenhan
	Gene structure prediction using information on homologous protein sequence. [My Copy] Computer applications in the biosciences : CABIOS, Vol. 12, No. 3. (June 1996), pp. 161-170. by I. B. Rogozin, L. Milanesi, N. A. Kolchanov posted by 1 person wenhan
	Large scale bacterial gene discovery by similarity search. [My Copy] Nature genetics, Vol. 7, No. 2. (June 1994), pp. 205-214. by K. Robison, W. Gilbert, G. M. Church posted by 1 person wenhan
	Evaluation of gene prediction software using a genomic data set: application to Arabidopsis thaliana sequences. [My Copy] Bioinformatics (Oxford, England), Vol. 15, No. 11. (November 1999), pp. 887-899. by N. Pavy, S. Rombauts, P. Déhais, et al.C. Mathé, D. V. Ramana, P. Leroy, P. Rouzé posted by 2 people jmartin49 wenhan
	A dictionary-based approach for gene annotation. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 6, No. 3-4. (r 1999), pp. 419-430. by L. Pachter, S. Batzoglou, V. I. Spitkovsky, et al.E. Banks, E. S. Lander, D. J. Kleitman, B. Berger posted by 1 person wenhan
	Gene recognition in eukaryotic DNA by comparison of genomic sequences. [My Copy] Bioinformatics (Oxford, England), Vol. 17, No. 11. (November 2001), pp. 1011-1018. by P. S. Novichkov, M. S. Gelfand, A. A. Mironov posted by 1 person wenhan
	ETOPE: Evolutionary test of predicted exons. [My Copy] Nucleic acids research, Vol. 31, No. 13. (1 July 2003), pp. 3564-3567. by A. Nekrutenko, W. Y. Chung, W. H. Li posted by 1 person wenhan
	Exon discovery by genomic sequence alignment. [My Copy] Bioinformatics (Oxford, England), Vol. 18, No. 6. (June 2002), pp. 777-787. by B. Morgenstern, O. Rinner, S. Abdeddaïm, et al.D. Haase, K. F. Mayer, A. W. Dress, H. W. Mewes posted by 1 person wenhan
	Performance-guarantee gene predictions via spliced alignment. [My Copy] Genomics, Vol. 51, No. 3. (1 August 1998), pp. 332-339. by A. A. Mironov, M. A. Roytberg, P. A. Pevzner, M. S. Gelfand posted by 1 person wenhan
	Pro-Frame: similarity-based gene recognition in eukaryotic DNA sequences with errors. [My Copy] Bioinformatics (Oxford, England), Vol. 17, No. 1. (January 2001), pp. 13-15. by A. A. Mironov, P. S. Novichkov, M. S. Gelfand posted by 1 person wenhan
	Finding intron/exon splice junctions using INFO, INterruption Finder and Organizer. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 5, No. 2. (1998), pp. 307-321. by M. T. Laub, D. W. Smith posted by 1 person wenhan
	Integrating database homology in a probabilistic gene structure model. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (1997), pp. 232-244. by D. Kulp, D. Haussler, M. G. Reese, F. H. Eeckman posted by 1 person wenhan
	A generalized hidden Markov model for the recognition of human genes in DNA. [My Copy] Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, Vol. 4 (1996), pp. 134-142. by D. Kulp, D. Haussler, M. G. Reese, F. H. Eeckman posted by 1 person wenhan
	EbEST: an automated tool using expressed sequence tags to delineate gene structure. [My Copy] Genome research, Vol. 8, No. 3. (March 1998), pp. 268-275. by J. Jiang, H. J. Jacob posted by 1 person wenhan
	The prediction of exons through an analysis of spliceable open reading frames. [My Copy] Nucleic acids research, Vol. 20, No. 13. (11 July 1992), pp. 3453-3462. by G. B. Hutchinson, M. R. Hayden posted by 1 person wenhan
	A tool for analyzing and annotating genomic sequences. [My Copy] Genomics, Vol. 46, No. 1. (15 November 1997), pp. 37-45. by X. Huang, M. D. Adams, H. Zhou, A. R. Kerlavage posted by 1 person wenhan
	Computational gene identification: an open problem. [My Copy] Computers & chemistry, Vol. 21, No. 4. (1997), pp. 215-222. by R. Guigó posted by 1 person wenhan
	The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression. [My Copy] Nucleic acids research, Vol. 12, No. 1 Pt 2. (11 January 1984), pp. 539-549. by M. Gribskov, J. Devereux, R. R. Burgess posted by 1 person wenhan
	Homology-based gene structure prediction: simplified matching algorithm using a translated codon (tron) and improved accuracy by allowing for long gaps. [My Copy] Bioinformatics (Oxford, England), Vol. 16, No. 3. (March 2000), pp. 190-202. by O. Gotoh posted by 5 people thegoose2 kittipat C. elegans / WormBase tharris wenhan
	Object-oriented transcription factors database (ooTFD). [My Copy] Nucleic acids research, Vol. 28, No. 1. (1 January 2000), pp. 308-310. by D. Ghosh posted by 1 person wenhan
	Prediction of function in DNA sequence analysis. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 2, No. 1. (1995), pp. 87-115. by M. S. Gelfand posted by 1 person wenhan
	Computer prediction of the exon-intron structure of mammalian pre-mRNAs. [My Copy] Nucleic acids research, Vol. 18, No. 19. (11 October 1990), pp. 5865-5869. by M. S. Gelfand posted by 1 person wenhan
	Titins in C.elegans with unusual features: coiled-coil domains, novel regulation of kinase activity and two new possible elastic regions. [My Copy] Journal of molecular biology, Vol. 323, No. 3. (25 October 2002), pp. 533-549. by D. B. Flaherty, K. M. Gernert, N. Shmeleva, et al.X. Tang, K. B. Mercer, M. Borodovsky, G. M. Benian posted by 5 people thegoose2 C. elegans / WormBase tharris wenhan MBLAB
	The gene identification problem: an overview for developers. [My Copy] Computers & chemistry, Vol. 20, No. 1. (March 1996), pp. 103-118. by J. W. Fickett posted by 2 people wenhan MBLAB
	Recognition of protein coding regions in DNA sequences. [My Copy] Nucleic acids research, Vol. 10, No. 17. (11 September 1982), pp. 5303-5318. by J. W. Fickett posted by 2 people wenhan MBLAB
	Gene structure prediction by linguistic methods. [My Copy] Genomics, Vol. 23, No. 3. (October 1994), pp. 540-551. by S. Dong, D. B. Searls posted by 2 people wenhan MBLAB
	Effective large-scale sequence similarity searches. [My Copy] Methods in enzymology, Vol. 266 (1996), pp. 212-227. by J. M. Claverie posted by 2 people wenhan MBLAB
	Computational methods for the identification of genes in vertebrate genomic sequences. [My Copy] Human molecular genetics, Vol. 6, No. 10. (1997), pp. 1735-1744. by J. M. Claverie posted by 2 people wenhan MBLAB
	Expectation maximization algorithm for identifying protein-binding sites with variable lengths from unaligned DNA fragments. [My Copy] Journal of molecular biology, Vol. 223, No. 1. (5 January 1992), pp. 159-170. by L. R. Cardon, G. D. Stormo posted by 2 people wenhan MBLAB
	Finding the genes in genomic DNA. [My Copy] Current opinion in structural biology, Vol. 8, No. 3. (June 1998), pp. 346-354. by C. B. Burge, S. Karlin posted by 3 people fisherp wenhan MBLAB
	Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. [My Copy] Nucleic acids research, Vol. 22, No. 22. (11 November 1994), pp. 4756-4767. by M. Borodovsky, K. E. Rudd, E. V. Koonin posted by 2 people wenhan MBLAB
	An artificial intelligence approach to motif discovery in protein sequences: application to steriod dehydrogenases. [My Copy] The Journal of steroid biochemistry and molecular biology, Vol. 62, No. 1. (May 1997), pp. 29-44. by T. L. Bailey, M. E. Baker, C. P. Elkan posted by 2 people wenhan MBLAB
	Fitting a mixture model by expectation maximization to discover motifs in biopolymers [My Copy] (1994) by T. Bailey, C. Elkan posted by 3 people wowalz wenhan MBLAB
	Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma. [My Copy] Nature genetics, Vol. 36, No. 1. (January 2004), pp. 27-29. by K. Oshima, S. Kakizawa, H. Nishigawa, et al.H. Y. Jung, W. Wei, S. Suzuki, R. Arashida, D. Nakata, S. Miyata, M. Ugaki, S. Namba posted by 2 people operon wenhan
	How to Interpret an Anonymous Bacterial Genome: Machine Learning Approach to Gene Identification [My Copy] Genome Res., Vol. 8, No. 11. (1 November 1998), pp. 1154-1171. by William S. Hayes, Mark Borodovsky posted by 2 people karfunkel wenhan
	Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. [My Copy] Applied and environmental microbiology, Vol. 73, No. 16. (August 2007), pp. 5261-5267. by Q. Wang, G. M. Garrity, J. M. Tiedje, J. R. Cole posted by 4 people esyoun jmeppley wenhan Olaf_Ilzins
	Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS [My Copy] Nature, Vol. 407, No. 6800. (07 September 2000), pp. 81-86. by Shuji Shigenobu, Hidemi Watanabe, Masahira Hattori, Yoshiyuki Sakaki, Hajime Ishikawa posted by 3 people kmachemer operon wenhan
	Codon preference and its use in identifying protein coding regions in long DNA sequences. [My Copy] Nucleic Acids Res, Vol. 10, No. 1. (11 January 1982), pp. 141-156. by R. Staden, A. D. McLachlan posted by 1 person wenhan
	Distributions of exons and introns in the human genome. [My Copy] In Silico Biol, Vol. 4, No. 4. (2004), pp. 387-393. by M. K. Sakharkar, V. T. Chow, P. Kangueane posted by 1 person wenhan