Barry Grant's Top Recommendations

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	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dumpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted by 42 people aceol tomhebbron ajbattle mgomes Scis0000002 lawraga bicko saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology phoenixzxl larsjuhljensen ellakat frohike carlk ethkim
	SCOPPI: a structural classification of protein-protein interfaces. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006) by Christof Winter, Andreas Henschel, Wan Kyu K. Kim, Michael Schroeder posted by 15 people winterschlaefer higueruelo sjcockell ana kuhn bicko chad_davis marcius choonpeng structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF Evangelia kintoki
	The relation between the divergence of sequence and structure in proteins. [My Copy] The EMBO journal, Vol. 5, No. 4. (April 1986), pp. 823-826. by C. Chothia, A. M. Lesk posted by 20 people martainn ucbcjbm bertelsen semin sgoetz cen4ik ana pansapiens jwm Einat marcius xdeupi ffranca insectopalo structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading. [My Copy] Proteins, Vol. 49, No. 3. (15 November 2002), pp. 350-364. by L. Lu, H. Lu, J. Skolnick posted by 12 people ana bicko chad_davis marcius sangeetha ruvido structural_bioinformatics Bioinformatics insilicodrug BioinfoCIPF SGU-CIPF kgutwin
	Evolution of protein sequences and structures. [My Copy] J Mol Biol, Vol. 291, No. 4. (27 August 1999), pp. 977-995. by T. C. Wood, W. R. Pearson posted by 6 people ana rabio sobolevnrm structural_bioinformatics Bioinformatics baker-group
	Influence of conservation on calculations of amino acid covariance in multiple sequence alignments. [My Copy] Proteins, Vol. 56, No. 2. (1 August 2004), pp. 211-221. by Anthony A. Fodor, Richard W. Aldrich posted by 13 people dfdong mgomes qluo RebeccaHamer ana gbart cjeans jlh64 structural_bioinformatics Bioinformatics mingzhi dgront Lombardo_7
	The relationship between domain duplication and recombination. [My Copy] Journal of molecular biology, Vol. 346, No. 1. (11 February 2005), pp. 355-365. by Christine Vogel, Sarah A. Teichmann, Jose Pereira-Leal posted by 10 people ana marcius tny cjeans martainn mdimon structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and bayesian scoring functions [My Copy] Journal of Molecular Biology, Vol. 268, No. 1. (25 April 1997), pp. 209-225. by K. Simons posted by 15 people chemrahul82 paddydu Diego_Prada reyez guxiyou ana jwm vavi wouterboomsma j3xucite hmk structural_bioinformatics Bioinformatics mijam joule
	Understanding nature's catalytic toolkit. [My Copy] Trends Biochem Sci (5 October 2005) by Alex Gutteridge, Janet M M. Thornton posted by 16 people ucbcjbm ana jwm Einat alexg gbart eweaver tny noby siebertm structural_bioinformatics Radiation_Damage Stressosome Bioinformatics grottenolm sim82
	Practical lessons from protein structure prediction. [My Copy] Nucleic Acids Res, Vol. 33, No. 6. (2005), pp. 1874-1891. by K. Ginalski, N. V. Grishin, A. Godzik, L. Rychlewski posted by 13 people mcbla ana aalibes thaliana okarsligil marcius duartemolha dgront mirzazadeh structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Evolution of function in protein superfamilies, from a structural perspective [My Copy] Journal of Molecular Biology, Vol. 307, No. 4. (6 April 2001), pp. 1113-1143. by Annabel E. Todd, Christine A. Orengo, Janet M. Thornton posted by 13 people ucbcjbm flbarroso yuslinaz sgoetz ana kuhn tny sriram_s cdallett uz_labu_laimi structural_bioinformatics Bioinformatics sim82
	Protein molecular function prediction by Bayesian phylogenomics. [My Copy] PLoS computational biology, Vol. 1, No. 5. (7 October 2005) by B. E. Engelhardt, M. I. Jordan, K. E. Muratore, S. E. Brenner posted by 14 people sgoetz engelhardt kentsis ana eoghanharr Einat dlr marcius sriram_s bootsy structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	A database of macromolecular motions. [My Copy] Nucleic Acids Res, Vol. 26, No. 18. (15 September 1998), pp. 4280-4290. by M. Gerstein, W. Krebs posted by 5 people apaydin ana aqeel structural_bioinformatics Bioinformatics
	Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast. [My Copy] J Mol Biol, Vol. 307, No. 3. (30 March 2001), pp. 929-938. by J. Park, M. Lappe, S. A. Teichmann posted by 8 people medic0747 chad_davis ronkeliz ana tjimenez cjeans structural_bioinformatics Bioinformatics
	A new progressive-iterative algorithm for multiple structure alignment. [My Copy] Bioinformatics (7 June 2005) by Dmitry Lupyan, Alejandra Leo-Macias, Angel R R. Ortiz posted by 10 people tomjad sebk ana dimka marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF tjimenez
	A model for statistical significance of local similarities in structure. [My Copy] J Mol Biol, Vol. 326, No. 5. (7 March 2003), pp. 1307-1316. by A. Stark, S. Sunyaev, R. B. Russell posted by 11 people karbak ana nigham chad_davis thamelry nickolay robert scis0000001 siebertm structural_bioinformatics Bioinformatics
	Protein structure comparison by alignment of distance matrices. [My Copy] Journal of molecular biology, Vol. 233, No. 1. (5 September 1993), pp. 123-138. by L. Holm, C. Sander posted by 10 people jwm tjimenez BragilMassoud ana nigham dgront siebertm structural_bioinformatics Bioinformatics sim82
	Structural systems biology: modelling protein interactions. [My Copy] Nature reviews. Molecular cell biology, Vol. 7, No. 3. (March 2006), pp. 188-197. by Patrick Aloy, Robert B. Russell posted by 28 people flbarroso timg chica Scis0000002 ubcg08l ana aalibes bicko xico dgront drastic choonpeng henschel ruvido massivemayhem cat_worth fishtank iris_2001 gvuister lpfernandes structural_bioinformatics Bioinformatics WetBiology Evangelia andreas_foersch higueruelo chad_davis jteyra
	Conservation of Orientation and Sequence in Protein Domain-Domain Interactions [My Copy] Journal of Molecular Biology, Vol. 345, No. 5., pp. 1265-1279. by Stephen J. Littler, Simon J. Hubbard posted by 8 people ana bicko Schmidtc cjeans winterschlaefer structural_bioinformatics Bioinformatics wilbur
	Protein flexibility predictions using graph theory [My Copy] Proteins: Structure, Function, and Genetics, Vol. 44, No. 2. (29 May 2001), pp. 150-165. by Donald J. Jacobs, A. J. Rader, Leslie A. Kuhn, M. F. Thorpe posted by 9 people Scis0000002 fl ana aqeel peprovy smenor structural_bioinformatics Bioinformatics LamBras
	Dynamics of large proteins through hierarchical levels of coarse-grained structures. [My Copy] J Comput Chem, Vol. 23, No. 1. (15 January 2002), pp. 119-127. by P. Doruker, R. L. Jernigan, I. Bahar posted by 5 people ana baaden aqeel structural_bioinformatics Bioinformatics
	A minimal gene set for cellular life derived by comparison of complete bacterial genomes. [My Copy] Proc Natl Acad Sci U S A, Vol. 93, No. 19. (17 September 1996), pp. 10268-10273. by A. R. Mushegian, E. V. Koonin posted by 12 people tomhebbron antonkratz balicea treangen operon ana bjorns jwm gbart structural_bioinformatics Bioinformatics westoll
	The C-type lectin fold as an evolutionary solution for massive sequence variation [My Copy] Nature Structural & Molecular Biology, Vol. 12, No. 10. (18 September 2005), pp. 886-892. by Stephen A. Mcmahon, Jason L. Miller, Jeffrey A. Lawton, et al.Donald E. Kerkow, Asher Hodes, Marc A. Marti-Renom, Sergei Doulatov, Eswar Narayanan, Andrej Sali, Jeff F. Miller, Partho Ghosh posted by 7 people stevanspringer ana marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Contact pair dynamics during folding of two small proteins: chicken villin head piece and the Alzheimer protein beta-amyloid. [My Copy] The Journal of chemical physics, Vol. 120, No. 3. (15 January 2004), pp. 1602-1612. by A. Mukherjee, B. Bagchi posted by 5 people flbarroso ana choonpeng structural_bioinformatics Bioinformatics
	Long- and short-range interactions in native protein structures are consistent/minimally frustrated in sequence space. [My Copy] Proteins, Vol. 50, No. 1. (1 January 2003), pp. 35-43. by S. Miyazawa, R. L. Jernigan posted by 6 people ana marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Ion-pairs in proteins. [My Copy] J Mol Biol, Vol. 168, No. 4. (25 August 1983), pp. 867-885. by D. J. Barlow, J. M. Thornton posted by 5 people ana pansapiens structural_bioinformatics Bioinformatics bicko
	Convergent evolution as a mechanism for pathogenic adaptation. [My Copy] Trends Microbiol (7 September 2005) by Sergey Sikora, Alex Strongin, Adam Godzik posted by 6 people ana marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Multi-domain Proteins in the Three Kingdoms of Life: Orphan Domains and Other Unassigned Regions [My Copy] Journal of Molecular Biology, Vol. 348, No. 1. (22 April 2005), pp. 231-243. by Diana Ekman, Asa K. Bjorklund, Johannes Frey-Skott, Arne Elofsson posted by 6 people wiedenhoeft ana tny choonpeng structural_bioinformatics Bioinformatics
	Protein folding and the organization of the protein topology universe. [My Copy] Trends in biochemical sciences, Vol. 30, No. 1. (January 2005), pp. 13-19. by K. Lindorff-Larsen, P. Røgen, E. Paci, M. Vendruscolo, C. M. Dobson posted by 6 people flbarroso ana baaden allmensch structural_bioinformatics Bioinformatics
	Contact order revisited: influence of protein size on the folding rate. [My Copy] Protein Sci, Vol. 12, No. 9. (September 2003), pp. 2057-2062. by D. N. Ivankov, S. O. Garbuzynskiy, E. Alm, K. W. Plaxco, D. Baker, A. V. Finkelstein posted by 6 people kentsis ana choonpeng structural_bioinformatics Bioinformatics RamuAnandakrishnan
	Evaluation of protein fold comparison servers. [My Copy] Proteins, Vol. 54, No. 2. (1 February 2004), pp. 260-270. by M. Novotny, D. Madsen, G. J. Kleywegt posted by 7 people reyez ana jwm structural_bioinformatics Radiation_Damage Stressosome Bioinformatics
	Protein structure prediction and structural genomics. [My Copy] Science, Vol. 294, No. 5540. (5 October 2001), pp. 93-96. by D. Baker, A. Sali posted by 14 people mijam newton1234 saunders taikoo ana vavi dgront sriram_s mirzazadeh structural_bioinformatics Bioinformatics mingzhi granujilla janasont
	ROCR: visualizing classifier performance in R [My Copy] Bioinformatics, Vol. 21, No. 20. (15 October 2005), pp. 3940-3941. by Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer posted by 7 people megraw ana balajis structural_bioinformatics Bioinformatics chad_davis baldigroup
	Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures. [My Copy] J Mol Biol, Vol. 346, No. 4. (4 March 2005), pp. 1173-1188. by R. Kolodny, P. Koehl, M. Levitt posted by 8 people karbak ana lulab balajis analogAI structural_bioinformatics Bioinformatics reyez
	The morph server: a standardized system for analyzing and visualizing macromolecular motions in a database framework. [My Copy] Nucleic Acids Res, Vol. 28, No. 8. (15 April 2000), pp. 1665-1675. by W. G. Krebs, M. Gerstein posted by 5 people ana aqeel structural_bioinformatics Bioinformatics beete
	The origin and extent of coarse-grained regularities in protein internal packing. [My Copy] Proteins, Vol. 53, No. 1. (1 October 2003), pp. 56-67. by Z. Bagci, A. Kloczkowski, R. L. Jernigan, I. Bahar posted by 4 people ana aqeel structural_bioinformatics Bioinformatics
	Sequence patterns associated with disordered regions in proteins. [My Copy] Proteins, Vol. 58, No. 1. (1 January 2005), pp. 144-150. by S. Lise, D. T. Jones posted by 4 people ana chad_davis structural_bioinformatics Bioinformatics
	MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison. [My Copy] Protein science : a publication of the Protein Society, Vol. 11, No. 11. (1 November 2002), pp. 2606-2621. by Angel R. Ortiz, Charlie E. Strauss, Osvaldo Olmea posted by 11 people tomjad awarlau ana iakes dimka jwm analogAI structural_bioinformatics Bioinformatics sebk tjimenez
	Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point. [My Copy] Protein Sci, Vol. 13, No. 7. (July 2004), pp. 1865-1874. by V. A. Ilyin, A. Abyzov, C. M. Leslin posted by 6 people medic0747 reyez ana analogAI structural_bioinformatics Bioinformatics
	A systematic comparison of protein structure classifications: SCOP, CATH and FSSP. [My Copy] Structure Fold Des, Vol. 7, No. 9. (15 September 1999), pp. 1099-1112. by C. Hadley, D. T. Jones posted by 5 people ana chad_davis cjeans structural_bioinformatics Bioinformatics
	3DCoffee: combining protein sequences and structures within multiple sequence alignments. [My Copy] J Mol Biol, Vol. 340, No. 2. (2 July 2004), pp. 385-395. by O. O'Sullivan, K. Suhre, C. Abergel, D. G. Higgins, C. Notredame posted by 9 people ana jwm analogAI structural_bioinformatics Radiation_Damage Stressosome Bioinformatics edvin nickolay
	The evolutionary capacity of protein structures [My Copy] In RECOMB '04: Proceedings of the eighth annual international conference on Computational molecular biology (2004), pp. 290-297. by Leonid Meyerguz, David Kempe, Jon Kleinberg, Ron Elber posted by 4 people apaydin ana structural_bioinformatics Bioinformatics
	Comparison of sequence profiles. Strategies for structural predictions using sequence information. [My Copy] Protein Sci, Vol. 9, No. 2. (February 2000), pp. 232-241. by L. Rychlewski, L. Jaroszewski, W. Li, A. Godzik posted by 6 people j3xucite ana aalibes dgront structural_bioinformatics Bioinformatics
	Core deformations in protein families: a physical perspective. [My Copy] Biophys Chem, Vol. 115, No. 2-3. (1 April 2005), pp. 125-128. by A. Leo-Macias, P. Lopez-Romero, D. Lupyan, D. Zerbino, A. R. Ortiz posted by 6 people ana lna dimka structural_bioinformatics Bioinformatics edvin
	A comprehensive and non-redundant database of protein domain movements [My Copy] Bioinformatics, Vol. 21, No. 12. (15 June 2005), pp. 2832-2838. by Guoying Qi, Richard Lee, Steven Hayward posted by 6 people martainn ana nigham structural_bioinformatics Bioinformatics higueruelo
	A protein interaction network of the malaria parasite Plasmodium falciparum. [My Copy] Nature, Vol. 438, No. 7064. (3 November 2005), pp. 103-107. by Douglas J. LaCount, Marissa Vignali, Rakesh Chettier, et al.Amit Phansalkar, Russell Bell, Jay R. Hesselberth, Lori W. Schoenfeld, Irene Ota, Sudhir Sahasrabudhe, Cornelia Kurschner, Stanley Fields, Robert E. Hughes posted by 16 people arider1 chica shung gildario marcio ana tmmurali dyermd Sharpshoot becarmson grahamc GeeSharpMinor lpfernandes structural_bioinformatics Bioinformatics csanford
	Analysis of covariation in an SH3 domain sequence alignment: applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions. [My Copy] J Mol Biol, Vol. 303, No. 3. (27 October 2000), pp. 433-446. by S. M. Larson, A. A. Di Nardo, A. R. Davidson posted by 9 people ana gbart analogAI Haggan cjeans tale structural_bioinformatics Bioinformatics bethbromley
	The Relationship Between Sequence and Interaction Divergence in Proteins [My Copy] Journal of Molecular Biology, Vol. 332, No. 5. (3 October 2003), pp. 989-998. by Patrick Aloy, Hugo Ceulemans, Alexander Stark, Robert B. Russell posted by 7 people ana pansapiens eweaver structural_bioinformatics Bioinformatics Evangelia RebeccaHamer
	Mechanisms of protein folding. [My Copy] Curr Opin Struct Biol, Vol. 11, No. 1. (February 2001), pp. 70-82. by V. Grantcharova, E. J. Alm, D. Baker, A. L. Horwich posted by 6 people ana Einat leemary4 structural_bioinformatics Bioinformatics rph
	Analysis of amino acid substitution during divergent evolution: the 400 by 400 dipeptide substitution matrix. [My Copy] Biochem Biophys Res Commun, Vol. 199, No. 2. (15 March 1994), pp. 489-496. by G. H. Gonnet, M. A. Cohen, S. A. Benner posted by 4 people ana bicko structural_bioinformatics Bioinformatics
	Transition State Contact Orders Correlate with Protein Folding Rates [My Copy] Journal of Molecular Biology, Vol. 352, No. 3. (23 September 2005), pp. 495-500. by Emanuele Paci, Kresten Lindorff-Larsen, Christopher M. Dobson, Martin Karplus, Michele Vendruscolo posted by 5 people ana allmensch structural_bioinformatics Bioinformatics RamuAnandakrishnan
	Structural Evolution of the Protein Kinase-Like Superfamily. [My Copy] PLoS Comput Biol, Vol. 1, No. 5. (21 October 2005) by Eric D D. Scheeff, Philip E E. Bourne posted by 7 people yuslinaz BragilMassoud ana anwazo structural_bioinformatics Bioinformatics renatomilani
	Sensitivity and selectivity in protein structure comparison. [My Copy] Protein Sci, Vol. 13, No. 3. (March 2004), pp. 773-785. by M. L. Sierk, W. R. Pearson posted by 6 people karbak ana pansapiens huyun110 structural_bioinformatics Bioinformatics
	The Closest BLAST Hit Is Often Not the Nearest Neighbor [My Copy] Journal of Molecular Evolution, Vol. 52, No. 6. (24 June 2001), pp. 540-542. by Liisa B. Koski, G. Brian Golding posted by 10 people pansapiens ana dayjm mycitation indigoviolet AaronDarling structural_bioinformatics Bioinformatics EisenLab cerca
	Bioinformatics for whole-genome shotgun sequencing of microbial communities. [My Copy] PLoS Comput Biol, Vol. 1, No. 2. (July 2005) by K. Chen, L. Pachter posted by 14 people hwright dakelley azazello knaseanka ana jmeppley dullhunk bluto wenhan structural_bioinformatics Bioinformatics djkt iSEEM druvus
	Topology fingerprint approach to the inverse protein folding problem. [My Copy] J Mol Biol, Vol. 227, No. 1. (5 September 1992), pp. 227-238. by A. Godzik, A. Kolinski, J. Skolnick posted by 6 people ana vavi dgront rabio structural_bioinformatics Bioinformatics
	A new progressive-iterative algorithm for multiple structure alignment [My Copy] Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3255-3263. by Dmitry Lupyan, Alejandra Leo-Macias, Angel R. Ortiz posted by 6 people ana dimka analogAI insectopalo structural_bioinformatics Bioinformatics
	Medium- and long-range interaction parameters between amino acids for predicting three-dimensional structures of proteins. [My Copy] Macromolecules, Vol. 9, No. 6. (c 1976), pp. 945-950. by S. Tanaka, H. A. Scheraga posted by 7 people ana thaliana dgront aengisch mcbla structural_bioinformatics Bioinformatics
	A global representation of the protein fold space. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 5. (4 March 2003), pp. 2386-2390. by J. Hou, G. E. Sims, C. Zhang, S. H. Kim posted by 6 people ana iakes tny j3xucite structural_bioinformatics Bioinformatics
	Multiple flexible structure alignment using partial order graphs. [My Copy] Bioinformatics (3 March 2005) by Yuzhen Ye, Adam Godzik posted by 5 people ana aalibes jwm structural_bioinformatics Bioinformatics
	Three key residues form a critical contact network in a protein folding transition state. [My Copy] Nature, Vol. 409, No. 6820. (1 February 2001), pp. 641-645. by M. Vendruscolo, E. Paci, C. M. Dobson, M. Karplus posted by 4 people ana allmensch structural_bioinformatics Bioinformatics
	An assessment of the accuracy of methods for predicting hydrogen positions in protein structures. [My Copy] Proteins, Vol. 61, No. 2. (1 November 2005), pp. 296-309. by L. R. Forrest, B. Honig posted by 5 people flbarroso ana cat_worth structural_bioinformatics Bioinformatics
	How old is your fold? [My Copy] Bioinformatics, Vol. 21 Suppl 1 (1 June 2005) by H. F. Winstanley, S. Abeln, C. M. Deane posted by 5 people ana pansapiens structural_bioinformatics Bioinformatics cdeane
	Definitions of enzyme function for the structural genomics era [My Copy] Current Opinion in Chemical Biology, Vol. 7, No. 2. (April 2003), pp. 230-237. by Patricia C. Babbitt posted by 5 people ana eweaver tny structural_bioinformatics Bioinformatics
	Structural mechanisms for domain movements in proteins. [My Copy] Biochemistry, Vol. 33, No. 22. (7 June 1994), pp. 6739-6749. by M. Gerstein, A. M. Lesk, C. Chothia posted by 6 people boris_aguilar vktrfrnkl ana kazemi structural_bioinformatics Bioinformatics
	Global optimization of clusters, crystals, and biomolecules. [My Copy] Science, Vol. 285, No. 5432. (27 August 1999), pp. 1368-1372. by D. J. Wales, H. A. Scheraga posted by 4 people ana dgront structural_bioinformatics Bioinformatics
	Water in protein structure prediction. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 10. (9 March 2004), pp. 3352-3357. by G. A. Papoian, J. Ulander, M. P. Eastwood, Z. Luthey-Schulten, P. G. Wolynes posted by 7 people flbarroso ana allamas grothp structural_bioinformatics Bioinformatics Lombardo_7
	Lateral gene transfer and the nature of bacterial innovation [My Copy] Nature, Vol. 405, No. 6784. (18 May 2000), pp. 299-304. by Howard Ochman, Jeffrey G. Lawrence, Eduardo A. Groisman posted by 15 people kmachemer cambray pkm mikheyev balicea johanviklund cmzmasek ana gregdingle jmeppley Ayest treangen manzanita structural_bioinformatics Bioinformatics
	Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation. [My Copy] J Mol Biol, Vol. 266, No. 1. (14 February 1997), pp. 195-214. by I. Bahar, R. L. Jernigan posted by 4 people ana lna structural_bioinformatics Bioinformatics
	Hydrogen bonding stabilizes globular proteins. [My Copy] Biophys J, Vol. 71, No. 4. (October 1996), pp. 2033-2039. by J. K. Myers, C. N. Pace posted by 4 people ana lna structural_bioinformatics Bioinformatics
	Hydrogen bonding in globular proteins. [My Copy] J Mol Biol, Vol. 226, No. 4. (20 August 1992), pp. 1143-1159. by D. F. Stickle, L. G. Presta, K. A. Dill, G. D. Rose posted by 4 people ana lna structural_bioinformatics Bioinformatics
	Backbone and side chain dynamics of mutant calmodulin-Peptide complexes. [My Copy] Biochemistry, Vol. 44, No. 38. (27 September 2005), pp. 12627-12639. by T. I. Igumenova, A. L. Lee, A. J. Wand posted by 4 people ana lna structural_bioinformatics Bioinformatics
	LGA: A method for finding 3D similarities in protein structures. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3370-3374. by A. Zemla posted by 6 people karbak ana vavi analogAI structural_bioinformatics Bioinformatics
	On the interactions of charged side chains with the alpha-helix backbone. [My Copy] Biophys Chem, Vol. 31, No. 1-2. (August 1988), pp. 29-34. by A. Godzik, T. Wesolowski posted by 4 people ana pansapiens structural_bioinformatics Bioinformatics
	Modeling conformational change in macromolecules as an elastic deformation. [My Copy] Proteins, Vol. 10, No. 2. (1991), pp. 162-170. by L. C. Andrews, R. W. Harrison posted by 4 people ana pansapiens structural_bioinformatics Bioinformatics
	Bioinformatics: Sequence and Genome Analysis [My Copy] (30 September 2004) by David W. Mount posted by 7 people ana aalibes jofiel structural_bioinformatics Bioinformatics mijam ep161302
	Detecting putative orthologs. [My Copy] Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1710-1711. by D. P. Wall, H. B. Fraser, A. E. Hirsh posted by 11 people cgaugain operon ana indigoviolet dquest structural_bioinformatics Bioinformatics EisenLab ninch rvosa cerca
	An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance. [My Copy] J Mol Biol, Vol. 301, No. 3. (18 August 2000), pp. 665-678. by A. S. Yang, B. Honig posted by 5 people ana dimka analogAI structural_bioinformatics Bioinformatics
	Large-scale survey for potentially targetable indels in bacterial and protozoan proteins. [My Copy] Proteins (28 November 2005) by Artem Cherkasov, Shang-Jung J. Lee, Devki Nandan, Neil E E. Reiner posted by 5 people ana aprasad martainn structural_bioinformatics Bioinformatics
	Structural genomics: computational methods for structure analysis. [My Copy] Protein Sci, Vol. 12, No. 9. (September 2003), pp. 1813-1821. by S. Goldsmith-Fischman, B. Honig posted by 6 people ana tjimenez vavi structural_bioinformatics Bioinformatics mijogiffin
	Comparative genomics, minimal gene-sets and the last universal common ancestor. [My Copy] Nat Rev Microbiol, Vol. 1, No. 2. (November 2003), pp. 127-136. by E. V. Koonin posted by 7 people ana dayjm radek Ayest gbart structural_bioinformatics Bioinformatics
	Measuring the similarity of protein structures by means of the universal similarity metric. [My Copy] Bioinformatics, Vol. 20, No. 7. (1 May 2004), pp. 1015-1021. by N. Krasnogor, D. A. Pelta posted by 7 people ana okarsligil vavi rabio rsantana structural_bioinformatics Bioinformatics
	Microeconomic principles explain an optimal genome size in bacteria. [My Copy] Trends Genet, Vol. 21, No. 1. (January 2005), pp. 21-25. by J. A. Ranea, A. Grant, J. M. Thornton, C. A. Orengo posted by 4 people ana structural_bioinformatics Bioinformatics jwm
	Frequency of gaps observed in a structurally aligned protein pair database suggests a simple gap penalty function [My Copy] Nucl. Acids Res., Vol. 32, No. 9. (20 May 2004), pp. 2838-2843. by Nalin C. Goonesekere, Byungkook Lee posted by 5 people j3xucite ana analogAI structural_bioinformatics Bioinformatics
	Multiple sequence alignment using partial order graphs [My Copy] Bioinformatics, Vol. 18, No. 3. (1 March 2002), pp. 452-464. by Christopher Lee, Catherine Grasso, Mark F. Sharlow posted by 13 people pimmy BioNica treangen Neeperando ana Cortel AbnerCYH azazello wenhan structural_bioinformatics Bioinformatics MBLAB gjuggler
	Horizontal gene transfer in prokaryotes: quantification and classification. [My Copy] Annu Rev Microbiol, Vol. 55 (2001), pp. 709-742. by E. V. Koonin, K. S. Makarova, L. Aravind posted by 9 people ana jmeppley madhadron caporaso vwchan structural_bioinformatics Bioinformatics biomedical-nlp beta
	The structural alignment between two proteins: is there a unique answer? [My Copy] Protein Sci, Vol. 5, No. 7. (July 1996), pp. 1325-1338. by A. Godzik posted by 6 people ana j3xucite rabio structural_bioinformatics Bioinformatics Inchoate
	Knowledge based modelling of homologous proteins, Part I: Three-dimensional frameworks derived from the simultaneous superposition of multiple structures. [My Copy] Protein Eng, Vol. 1, No. 5. (v 1987), pp. 377-384. by M. J. Sutcliffe, I. Haneef, D. Carney, T. L. Blundell posted by 6 people sebk ana warlock6x3 medic0747 structural_bioinformatics Bioinformatics
	Water and proteins: a love-hate relationship. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 10. (9 March 2004), pp. 3325-3326. by Y. Levy, J. N. Onuchic posted by 4 people ana structural_bioinformatics Bioinformatics mikaellund
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	The cobweb of life revealed by genome-scale estimates of horizontal gene transfer. [My Copy] PLoS Biol, Vol. 3, No. 10. (October 2005) by F. Ge, L. S. Wang, J. Kim posted by 7 people sriesenfeld operon ana jmeppley AaronDarling structural_bioinformatics Bioinformatics
	Flexible structure alignment by chaining aligned fragment pairs allowing twists. [My Copy] Bioinformatics (Oxford, England), Vol. 19 Suppl 2 (October 2003) by Yuzhen Ye, Adam Godzik posted by 5 people ubcg08l ana nigham structural_bioinformatics Bioinformatics
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	Deterministic features of side-chain main-chain hydrogen bonds in globular protein structures. [My Copy] Protein Eng, Vol. 13, No. 4. (April 2000), pp. 227-238. by N. Eswar, C. Ramakrishnan posted by 4 people ana martainn structural_bioinformatics Bioinformatics
	An analysis of side chain interactions and pair correlations within antiparallel beta-sheets: the differences between backbone hydrogen-bonded and non-hydrogen-bonded residue pairs. [My Copy] Proteins, Vol. 22, No. 2. (June 1995), pp. 119-131. by M. A. Wouters, P. M. Curmi posted by 4 people ana martainn structural_bioinformatics Bioinformatics
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	Identification of novel virulence-associated genes via genome analysis of hypothetical genes. [My Copy] Infect Immun, Vol. 72, No. 3. (March 2004), pp. 1333-1340. by S. Garbom, A. Forsberg, H. Wolf-Watz, B. M. Kihlberg posted by 4 people ana martainn structural_bioinformatics Bioinformatics
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	STRUCTURAL BIOLOGY: Learning to Speak the Language of Proteins [My Copy] Science, Vol. 302, No. 5649. (21 November 2003), pp. 1347-1348. by David T. Jones posted by 4 people karbak ana structural_bioinformatics Bioinformatics
	The grail problem. [My Copy] Genome Biol, Vol. 1, No. 1. (2000) by G. A. Petsko posted by 4 people karbak ana structural_bioinformatics Bioinformatics