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	Structural characterisation and functional significance of transient protein-protein interactions. [My Copy] Journal of molecular biology, Vol. 325, No. 5. (31 January 2003), pp. 991-1018. by I. M. Nooren, J. M. Thornton posted by 6 people chica chad_davis drastic ramensky higueruelo marti
	An evaluation of automated homology modelling methods at low target template sequence similarity [My Copy] Bioinformatics, Vol. 23, No. 15. (1 August 2007), pp. 1901-1908. by James A. Dalton, Richard M. Jackson posted by 6 people cdeane chad_davis biehl neils pansapiens marti
	Analysis of ordered and disordered protein complexes reveals structural features discriminating between stable and unstable monomers. [My Copy] Journal of molecular biology, Vol. 341, No. 5. (27 August 2004), pp. 1327-1341. by K. Gunasekaran, C. J. Tsai, R. Nussinov posted by 3 people chad_davis allmensch marti
	Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features [My Copy] Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637. by Wolfgang Kabsch, Christian Sander posted by 34 people dfdong barmak7282 Vadikus j3xucite scampos TLVincent maria_hauser pablocarb rpetrenko carlosjavierna mijam wqia007 dsmueller niallhaslam saunders jwm sebk Diego_Prada pjcite kaarsinogen lna chad_davis wouterboomsma penka ffranca dgront choonpeng rabio gisle medic0747 martainn chgjb mschofie marti
	TRANSFAC: transcriptional regulation, from patterns to profiles. [My Copy] Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 374-378. by V. Matys, E. Fricke, R. Geffers, et al.E. Gössling, M. Haubrock, R. Hehl, K. Hornischer, D. Karas, A. E. Kel, O. V. Kel-Margoulis, D. U. Kloos, S. Land, B. Lewicki-Potapov, H. Michael, R. Münch, I. Reuter, S. Rotert, H. Saxel, M. Scheer, S. Thiele, E. Wingender posted by 10 people raylim aprasad aalibes setar chad_davis GustavoLacerda marti Auger Dead 60's kmdaily
	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by Michael Ashburner, Catherine A. Ball, Judith A. Blake, et al.David Botstein, Heather Butler, J. Michael Cherry, Allan P. Davis, Kara Dolinski, Selina S. Dwight, Janan T. Eppig, Midori A. Harris, David P. Hill, Laurie Issel-Tarver, Andrew Kasarskis, Suzanna Lewis, John C. Matese, Joel E. Richardson, Martin Ringwald, Gerald M. Rubin, Gavin Sherlock posted by 87 people josepe krapnik 8_01 suizan sanchezbuelna Jporci artaban421 mtaschuk niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick BTS-PT-AS-CS vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele kdl Bioinformatics EisenLab T_lab biomedical-nlp CitoJam pablomendes carlk marck dgront roys rvosa FAB-lab fongenae
	PIPER: an FFT-based protein docking program with pairwise potentials. [My Copy] Proteins, Vol. 65, No. 2. (1 November 2006), pp. 392-406. by D. Kozakov, R. Brenke, S. R. Comeau, S. Vajda posted by 2 people chad_davis selrac
	Prediction of Protein–Protein Interaction Sites in Sequences and 3D Structures by Random Forests [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (30 January 2009), e1000278. by Mile Šikić, Sanja Tomić, Kristian Vlahoviček posted by 10 people roys svozil marti structural_bioinformatics McCammon barry grahamc higueruelo kshameer neils
	The unfoldomics decade: an update on intrinsically disordered proteins. [My Copy] BMC genomics, Vol. 9 Suppl 2 (2008) by A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, et al.Pedro Romero, Jack Y. Yang, Jessica Walton W. Chen, Vladimir Vacic, Zoran Obradovic, Vladimir N. Uversky posted by 7 people kiekyon niallhaslam robfsouza carlosjavierna guhjy higueruelo chad_davis
	A careful disorderliness in the proteome: Sites for interaction and targets for future therapies [My Copy] FEBS Letters, Vol. 582, No. 8. (09 April 2008), pp. 1271-1275. by R RUSSELL,, T GIBSON, posted by 9 people eannaokeefe niallhaslam cat_hutchinson68 guhjy Evangelia robrussell higueruelo kluck chad_davis
	Dynamic personalities of proteins [My Copy] Nature, Vol. 450, No. 7172. (12 December 2007), pp. 964-972. by Katherine Henzler-Wildman, Dorothee Kern posted by 21 people victorclaessen saravan Diego_Prada xdeupi viktor21614 ruvido barry pavanghatty chad_davis allmensch choonpeng rsantana cjeans sobolevnrm baker-group wilbur mijam kjell phoenixzxl higueruelo GeeSharpMinor
	The molecular sociology of the cell [My Copy] Nature, Vol. 450, No. 7172. (12 December 2007), pp. 973-982. by Carol V. Robinson, Andrej Sali, Wolfgang Baumeister posted by 9 people mijam guhjy cmmorel chad_davis grahamc cjeans phoenixzxl higueruelo megraw
	The hard cell: From proteomics to a whole cell model [My Copy] FEBS Letters In Vienna Special Issue: Molecular Machines, Vol. 581, No. 15. (19 June 2007), pp. 2870-2876. by Matthew J. Betts, Robert B. Russell posted by 3 people ruvido higueruelo chad_davis
	DisProt: the Database of Disordered Proteins. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by M. Sickmeier, J. A. Hamilton, T. LeGall, et al.V. Vacic, M. S. Cortese, A. Tantos, B. Szabo, P. Tompa, J. Chen, V. N. Uversky, Z. Obradovic, A. K. Dunker posted by 5 people carlosjavierna chad_davis higueruelo choonpeng allmensch
	The TRANSFAC system on gene expression regulation. [My Copy] Nucleic Acids Res, Vol. 29, No. 1. (1 January 2001), pp. 281-283. by E. Wingender, X. Chen, E. Fricke, et al.R. Geffers, R. Hehl, I. Liebich, M. Krull, V. Matys, H. Michael, R. Ohnhäuser, M. Prüss, F. Schacherer, S. Thiele, S. Urbach posted by 2 people marti Takayuki
	Plaid Models for Gene Expression Data [My Copy] Statistica Sinica, Vol. 12 (2000), pp. 61-86. by Laura Lazzeroni, Art Owen posted by 2 people meanerelk marti
	BiGGEsTS: integrated environment for biclustering analysis of time series gene expression data [My Copy] BMC Research Notes, Vol. 2, No. 1. (2009), 124. by Joana Goncalves, Sara Madeira, Arlindo Oliveira posted by 2 people meanerelk marti
	QUBIC: a qualitative biclustering algorithm for analyses of gene expression data. [My Copy] Nucleic acids research, Vol. 37, No. 15. (1 August 2009), e101. by Guojun Li, Qin Ma, Haibao Tang, Andrew H. Paterson, Ying Xu posted by 9 people marti Orengo Group Journal Picks davidalee meanerelk rdiaz gbloeb fpattyn tmmurali yaredo
	Design of therapeutic proteins with enhanced stability. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 29. (21 July 2009), pp. 11937-11942. by Naresh Chennamsetty, Vladimir Voynov, Veysel Kayser, Bernhard Helk, Bernhardt L. Trout posted by 6 people guhjy biomcgary marti phoenixzxl edws zwang
	Evaluation of comparative protein modeling by MODELLER. [My Copy] Proteins, Vol. 23, No. 3. (November 1995), pp. 318-326. by A. Sali, L. Potterton, F. Yuan, H. van Vlijmen, M. Karplus posted by 3 people marti bratwurst richter80
	Aggregation-Prone Motifs in Human Immunoglobulin G. [My Copy] Journal of molecular biology (13 June 2009) by Naresh Chennamsetty, Bernhard Helk, Vladimir Voynov, Veysel Kayser, Bernhardt L. Trout posted by 1 person marti
	Concentration and Length Dependence of DNA Looping in Transcriptional Regulation [My Copy] PLoS ONE, Vol. 4, No. 5. (25 May 2009), e5621. by Lin Han, Hernan G. Garcia, Seth Blumberg, et al.Kevin B. Towles, John F. Beausang, Philip C. Nelson, Rob Phillips posted by 1 person marti
	Toward a gold standard for promoter prediction evaluation. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. i313-320. by Thomas Abeel, Yves Van de Peer, Yvan Saeys posted by 10 people bedo ilyashl daforerog dquest marti druvus Journal picks AlexBateman tonamswish djkt
	Assessing phylogenetic motif models for predicting transcription factor binding sites [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i339-347. by John Hawkins, Charles Grant, William S. Noble, Timothy L. Bailey posted by 13 people bsamal dquest EisenLab Bioinformatics - CRUK Stew marti Lombardo_7 megraw operon nuin Journal picks AlexBateman scjparker
	Protein wrapping: a molecular marker for association, aggregation and drug design. [My Copy] Chemical Society reviews, Vol. 37, No. 11. (November 2008), pp. 2373-2382. by A. Fernández, A. Crespo posted by 1 person marti
	Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 218. by Yu P. Wang, Kuo B. Li posted by 15 people frohike microRNA jfr guhjy giovenko marti lwaldron daforerog samgj shikin ealloza dswan natstreet Bioinformatics - CRUK Stew
	Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. 1513-1520. by Nurcan Tuncbag, Attila Gursoy, Ozlem Keskin posted by 8 people okapi dfdong ubcg08l marti apaydin structural_bioinformatics kshameer phoenixzxl
	Progress and challenges in predicting protein-protein interaction sites [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 233-246. by Iakes Ezkurdia, Lisa Bartoli, Piero Fariselli, Rita Casadio, Alfonso Valencia, Michael L. Tress posted by 11 people flbarroso biomcgary nanonan apaydin marti neils reyez McCammon barry renatomilani iakes
	A census of human transcription factors: function, expression and evolution [My Copy] Nat Rev Genet, Vol. 10, No. 4. (April 2009), pp. 252-263. by Juan M. Vaquerizas, Sarah K. Kummerfeld, Sarah A. Teichmann, Nicholas M. Luscombe posted by 12 people marti PabloMarin absterga engelhardt lwaldron cassj daforerog druvus nuin oannes megraw idonaldson
	Architectures and Functional Coverage of Protein–Protein Interfaces [My Copy] Journal of Molecular Biology, Vol. 381, No. 3. (05 September 2008), pp. 785-802. by Nurcan Tuncbag, Attila Gursoy, Emre Guney, Ruth Nussinov, Ozlem Keskin posted by 3 people dfdong daforerog marti
	Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature [My Copy] Bioinformatics (12 November 2008), btn583. by Jiansheng Wu, Hongde Liu, Xueye Duan, et al.Yan Ding, Hongtao Wu, Yunfei Bai, Xiao Sun posted by 3 people marti lptolik hugowill
	Human Protein Reference Database--2009 update. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (6 January 2009), gkn892. by T. S. Keshava Prasad, Renu Goel, Kumaran Kandasamy, et al.Shivakumar Keerthikumar, Sameer Kumar, Suresh Mathivanan, Deepthi Telikicherla, Rajesh Raju, Beema Shafreen, Abhilash Venugopal, Lavanya Balakrishnan, Arivusudar Marimuthu, Sutopa Banerjee, Devi S. Somanathan, Aimy Sebastian, Sandhya Rani, Somak Ray, C. J. Harrys Kishore, Sashi Kanth, Mukhtar Ahmed, Manoj K. Kashyap, Riaz Mohmood, Y. L. Ramachandra, V. Krishna, B. Abdul Rahiman, Sujatha Mohan, Prathibha Ranganathan, Subhashri Ramabadran, Raghothama Chaerkady, Akhilesh Pandey posted by 8 people shikin marti swp09 ipark-kaist diamantis sjcockell mpitman renatomilani
	Structure of the intact PPAR-[ggr]-RXR-[agr] nuclear receptor complex on DNA [My Copy] Nature (29 October 2008), pp. 350-356. by Vikas Chandra, Pengxiang Huang, Yoshitomo Hamuro, et al.Srilatha Raghuram, Yongjun Wang, Thomas P. Burris, Fraydoon Rastinejad posted by 3 people yhkim anazhu marti
	Correlated Evolution of Interacting Proteins: Looking Behind the Mirrortree [My Copy] Journal of Molecular Biology, Vol. 385, No. 1. (09 January 2009), pp. 91-98. by M. Kann, B. Shoemaker, A. Panchenko, T. Przytycka posted by 14 people mgomes biomcgary chica druvus baker-group sobolevnrm mhofree grahamc Bioinformatics barry zwang marti reyez paulschlesinger
	Protein domain interfaces: characterization and comparison with oligomeric protein interfaces [My Copy] Protein Eng., Vol. 13, No. 2. (1 February 2000), pp. 77-82. by Susan Jones, Antoine Marin, Thornton posted by 2 people marti csrocha
	Protein co-evolution, co-adaptation and interactions. [My Copy] The EMBO journal, Vol. 27, No. 20. (22 October 2008), pp. 2648-2655. by Florencio Pazos, Alfonso Valencia posted by 13 people paulymer chica biomcgary qluo balicea grahamc fhsantanna marti structural_bioinformatics McCammon Bioinformatics barry sjcockell
	Using transcription factor binding site co-occurrence to predict regulatory regions. [My Copy] Genome informatics. International Conference on Genome Informatics, Vol. 18 (2007), pp. 109-118. by H. Klein, M. Vingron posted by 1 person marti
	Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (1 August 2008), e1000140. by Elena Zotenko, Julian Mestre, Dianne P. O'Leary, Teresa M. Przytycka posted by 14 people lawraga marti chrisamiller kaarsinogen jfr aramata jmjimenez srp33 maralena cabbagesofdoom shikin GeneGo cerca tmmurali
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science In Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted by 34 people dfdong memerman operon TRHvidsten BioNica cmzmasek timflutre pradiptaray alexeid marti bpcusack hpaces dinnes gjuggler djkt ArtemPankin Khavkin's lab phoenixzxl jago marck imtechnology aprasad zwang bmaust bpb michaelbarton Schmidtc AbnerCYH gulsacan emptyhb iSEEM jlgreen Green Lab nuin
	Born to bind: the BTB protein-protein interaction domain. [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 28, No. 12. (December 2006), pp. 1194-1202. by R. Perez-Torrado, D. Yamada, P. A. Defossez posted by 1 person marti
	The biology of eukaryotic promoter prediction--a review. [My Copy] Computers & chemistry, Vol. 23, No. 3-4. (15 June 1999), pp. 191-207. by A. G. Pedersen, P. Baldi, Y. Chauvin, S. Brunak posted by 3 people jmartin49 marti xiaobeizhao
	Evaluation of local structure alphabets based on residue burial. [My Copy] Proteins, Vol. 55, No. 3. (15 May 2004), pp. 508-518. by R. Karchin, M. Cline, K. Karplus posted by 2 people svozil marti
	Biclustering microarray data by Gibbs sampling [My Copy] Bioinformatics, Vol. 19, No. suppl_2. (27 September 2003), pp. ii196-205. by Qizheng Sheng, Yves Moreau, Bart De Moor posted by 5 people meanerelk marti akastrin surajitray tvdbulck
	Bayesian biclustering of gene expression data. [My Copy] BMC genomics, Vol. 9 Suppl 1, No. Suppl 1. (2008), S4. by Jiajun Gu, Jun S. Liu posted by 10 people meanerelk dolchan marti tonamswish bertelsen imina tvdbulck jfr yangc dragonrez
	BicAT: a biclustering analysis toolbox. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 10. (15 May 2006), pp. 1282-1283. by Simon Barkow, Stefan Bleuler, Amela Prelic, Philip Zimmermann, Eckart Zitzler posted by 4 people meanerelk marti jurgenjanes dragonrez
	FOXO-binding partners: it takes two to tango. [My Copy] Oncogene, Vol. 27, No. 16. (7 April 2008), pp. 2289-2299. by K. E. van der Vos, P. J. Coffer posted by 2 people guhjy marti
	ProMateus--an open research approach to protein-binding sites analysis. [My Copy] Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007) by H. Neuvirth, U. Heinemann, D. Birnbaum, N. Tishby, G. Schreiber posted by 2 people iaolier marti
	Inferring protein DNA dependencies using motif alignments and mutual information [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i297-304. by Shaun Mahony, Philip E. Auron, Panayiotis V. Benos posted by 2 people nklee marti
	TRANSFAC retrieval program: a network model database of eukaryotic transcription regulating sequences and proteins. [My Copy] J Comput Biol, Vol. 1, No. 3. (1994), pp. 191-198. by R. Knüppel, P. Dietze, W. Lehnberg, K. Frech, E. Wingender posted by 1 person marti
	Automatic transcription factor classifier based on functional domain composition. [My Copy] Biochem Biophys Res Commun, Vol. 347, No. 1. (18 August 2006), pp. 141-144. by Z. Qian, Y. D. Cai, Y. Li posted by 2 people druvus marti
	KaKs_Calculator: calculating Ka and Ks through model selection and model averaging. [My Copy] Genomics, proteomics & bioinformatics / Beijing Genomics Institute, Vol. 4, No. 4. (November 2006), pp. 259-263. by Zhang Zhang, Jun Li, Xiao-Qian Q. Zhao, Jun Wang, Gane Ka-Shu K. Wong, Jun Yu posted by 2 people dandaman marti
	Synonymous and nonsynonymous rate variation in nuclear genes of mammals. [My Copy] J Mol Evol, Vol. 46, No. 4. (April 1998), pp. 409-418. by Z. Yang, R. Nielsen posted by 1 person marti
	On itinerant water molecules and detectability of protein-protein interfaces through comparative analysis of homologues. [My Copy] J Mol Biol, Vol. 369, No. 2. (1 June 2007), pp. 584-595. by I. Mihalek, I. Res, O. Lichtarge posted by 2 people marti jteyra
	POPS: A fast algorithm for solvent accessible surface areas at atomic and residue level. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3364-3366. by L. Cavallo, J. Kleinjung, F. Fraternali posted by 2 people mijam marti
	Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006) by F. Armougom, S. Moretti, O. Poirot, et al.S. Audic, P. Dumas, B. Schaeli, V. Keduas, C. Notredame posted by 1 person marti
	Biclustering algorithms for biological data analysis: a survey. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM In IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 1, No. 1. (r 2004), pp. 24-45. by Sara C. Madeira, Arlindo L. Oliveira posted by 16 people meanerelk marti socwangnan jurgenjanes zufar ilyashl saman_vp ihpark tvdbulck librain dps bozdagd ealloza carlk chrisamiller tmmurali
	Emergent unsupervised clustering paradigms with potential application to bioinformatics. [My Copy] Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 677-690. by David J. Miller, Yue Wang, George Kesidis posted by 7 people meanerelk marti svozil bozdagd bertelsen VGreiff dps
	Matt: Local Flexibility Aids Protein Multiple Structure Alignment. [My Copy] PLoS Comput Biol, Vol. 4, No. 1. (11 January 2008) by Matthew Menke, Bonnie Berger, Lenore Cowen posted by 4 people sebk dimka marti carlk
	High-confidence prediction of global interactomes based on genome-wide coevolutionary networks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 3. (22 January 2008), pp. 934-939. by David Juan, Florencio Pazos, Alfonso Valencia posted by 20 people dfdong ptrobajo biomcgary qluo winterschlaefer marti tmmurali brant balicea sebastien_vigneau bluto cjeans aconesa microbiology_nijmegen Katje roys friendpine huali mdstobbe paolomarcatili
	Expressing the human genome. [My Copy] Nature, Vol. 409, No. 6822. (15 February 2001), pp. 832-833. by R. Tupler, G. Perini, M. R. Green posted by 3 people marti balicea hplatero
	Predicting Protein Function with Hierarchical Phylogenetic Profiles: The Gene3D Phylo-Tuner Method Applied to Eukaryotic Genomes [My Copy] PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e237. by Juan A. Ranea, Corin Yeats, Alastair Grant, Christine A. Orengo posted by 7 people Orengo Group functional genomics watchlist marti eckart_bindewald skhadar zwang asddd hpaces
	Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions [My Copy] PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e178. by Ramon Aragues, Andrej Sali, Jaume Bonet, Marc A. Marti-Renom, Baldo Oliva posted by 4 people marti zwang winterschlaefer Ema
	BiVisu: software tool for bicluster detection and visualization. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 17. (1 September 2007), pp. 2342-2344. by K. O. Cheng, N. F. Law, W. C. Siu, T. H. Lau posted by 4 people meanerelk marti sebastien_vigneau rdiaz
	Proteins with H-bond packing defects are highly interactive with lipid bilayers: Implications for amyloidogenesis [My Copy] Proceedings of the National Academy of Sciences, Vol. 100, No. 5. (4 March 2003), pp. 2391-2396. by Ariel Fernandez, Stephen R. Berry posted by 4 people marti barry structural_bioinformatics Bioinformatics
	Recent Evolutions of Multiple Sequence Alignment Algorithms [My Copy] PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123. by Cédric Notredame posted by 15 people operon druvus treangen mdimmic rvosa timflutre stajich zwang cabbagezs groepl Bioinformatics FAB-lab yoanjacquemin marti smbe2008
	Dissecting protein-protein recognition sites. [My Copy] Proteins, Vol. 47, No. 3. (15 May 2002), pp. 334-343. by P. Chakrabarti, J. Janin posted by 1 person marti
	The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods. [My Copy] Nucleic Acids Res (25 May 2007) by Sebastien Moretti, Fabrice Armougom, Iain M M. Wallace, Desmond G G. Higgins, Cornelius V V. Jongeneel, Cedric Notredame posted by 5 people marcius sebastien_vigneau BioinfoCIPF SGU-CIPF marti
	Automated generation of heuristics for biological sequence comparison [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005), 31. by Guy Slater, Ewan Birney posted by 14 people n00c rshe darian mhamada orzenil jmcq druvus waszak indigoviolet massivemayhem wenhan EisenLab hpaces marti
	Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites [My Copy] PLoS Comput Biol, Vol. 3, No. 5. (11 May 2007), e90. by Timothy E. Reddy, Charles DeLisi, Boris E. Shakhnovich posted by 9 people pradiptaray nklee aalibes dpollard medic0747 GustavoLacerda EisenLab mircea marti
	Specificity in protein interactions and its relationship with sequence diversity and coevolution [My Copy] Proceedings of the National Academy of Sciences In Proceedings of the National Academy of Sciences, Vol. 104, No. 19. (8 May 2007), pp. 7999-8004. by Luke Hakes, Simon C. Lovell, Stephen G. Oliver, David L. Robertson posted by 18 people dfdong mgomes chica diamantis dullhunk marti stevanspringer bjorns cjeans zwang Garamonfok cursonivel1 tale winterschlaefer FAB-lab cursonivel1 phoenixzxl chrys
	Specificity and evolvability in eukaryotic protein interaction networks. [My Copy] PLoS computational biology, Vol. 3, No. 2. (16 February 2007), e25. by Pedro Beltrao, Luis Serrano posted by 7 people saket chica kiekyon marti aalibes dylan77 aheilbut
	SAD--a normalized structural alignment database: improving sequence-structure alignments. [My Copy] Bioinformatics, Vol. 20, No. 15. (12 October 2004), pp. 2333-2344. by B. Marsden, R. Abagyan posted by 2 people dgront marti
	NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins [My Copy] Nucl. Acids Res., Vol. 35, No. Supplement 1. (27 November 2006), pp. gkl842-D65. by Kim D. Pruitt, Tatiana Tatusova, Donna R. Maglott posted by 3 people shikin marti nlapalu
	Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices [My Copy] BMC Bioinformatics, Vol. 8 (09 January 2007), 6. by Roger A. Craig, Li Liao posted by 3 people marti iris_2001 zwang
	Sequence comparison by sequence harmony identifies subtype-specific functional sites. [My Copy] Nucleic acids research, Vol. 34, No. 22. (December 2006), pp. 6540-6548. by Walter Pirovano, K. Anton Feenstra, Jaap Heringa posted by 7 people mgomes jameswasmuth marcius sriram_s BioinfoCIPF SGU-CIPF marti
	Predicting domain-domain interactions using a parsimony approach [My Copy] Genome Biology, Vol. 7, No. 11. (09 November 2006), R104. by Katia Guimaraes, Raja Jothi, Elena Zotenko, Teresa Przytycka posted by 7 people dfdong qluo marti cerca phoenixzxl carlk saket
	TRANSFAC: an integrated system for gene expression regulation. [My Copy] Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 316-319. by E. Wingender, X. Chen, R. Hehl, et al.H. Karas, I. Liebich, V. Matys, T. Meinhardt, M. Prüss, I. Reuter, F. Schacherer posted by 2 people gpalidwor marti
	Pfam: a comprehensive database of protein domain families based on seed alignments. [My Copy] Proteins, Vol. 28, No. 3. (July 1997), pp. 405-420. by E. L. Sonnhammer, S. R. Eddy, R. Durbin posted by 10 people saunders thegoose2 C. elegans / WormBase tharris pcahan1 cjeans antonkratz ca3295 marti gulkur
	Knowledge-based protein secondary structure assignment [My Copy] Proteins: Structure, Function, and Genetics, Vol. 23, No. 4. (December 1995), pp. 566-579. by Dmitrij Frishman, Patrick Argos posted by 6 people mittinatten ashaytan3 rpetrenko marti choonpeng saravan
	Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions. [My Copy] Journal of molecular biology, Vol. 362, No. 4. (29 September 2006), pp. 861-875. by R. Jothi, P. F. Cherukuri, A. Tasneem, T. M. Przytycka posted by 6 people chica swp09 marti choonpeng grahamc iris_2001
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	Development of Human Protein Reference Database as an Initial Platform for Approaching Systems Biology in Humans [My Copy] Genome Research, Vol. 13, No. 10. (October 2003), pp. 2363-2371. by Suraj Peri, J. Daniel Navarro, Ramars Amanchy, et al.Troels Z. Kristiansen, Chandra K. Jonnalagadda, Vineeth Surendranath, Vidya Niranjan, Babylakshmi Muthusamy, T. K. B. Gandhi, Mads Gronborg, Nieves Ibarrola, Nandan Deshpande, K. Shanker, H. N. Shivashankar, B. P. Rashmi, M. A. Ramya, Zhixing Zhao, K. N. Chandrika, N. Padma, H. C. Harsha, A. J. Yatish, M. P. Kavitha, Minal Menezes, Dipanwita R. Choudhury, Shubha Suresh, Neelanjana Ghosh, R. Saravana, Sreenath Chandran, Subhalakshmi Krishna, Mary Joy, Sanjeev K. Anand, V. Madavan, Ansamma Joseph, Guang W. Wong, William P. Schiemann, Stefan N. Constantinescu, Lily Huang, Roya Khosravi-Far, Hanno Steen, Muneesh Tewari, Saghi Ghaffari, Gerard C. Blobe, Chi V. Dang, Joe G. N. Garcia, Jonathan Pevsner, Ole N. Jensen, Peter Roepstorff, Krishna S. Deshpande, Arul M. Chinnaiyan, Ada Hamosh, Aravinda Chakravarti, Akhilesh Pandey posted by 8 people marti semin jeremymiller aelef miguel maryee bundschu generif_paper
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	Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins. [My Copy] J Mol Biol, Vol. 307, No. 5. (13 April 2001), pp. 1487-1502. by R. Landgraf, I. Xenarios, D. Eisenberg posted by 11 people dfdong ramiro2k barry pansapiens sriram_s cjeans structural_bioinformatics Bioinformatics mingzhi Pao-Yang marti
	Annotating nucleic acid-binding function based on protein structure. [My Copy] J Mol Biol, Vol. 326, No. 4. (28 February 2003), pp. 1065-1079. by E. W. Stawiski, L. M. Gregoret, Y. Mandel-Gutfreund posted by 2 people marti kaarsinogen
	Predicting protein-protein interaction by searching evolutionary tree automorphism space. [My Copy] Bioinformatics (Oxford, England), Vol. 21 Suppl 1 (1 June 2005) by R. Jothi, M. G. Kann, T. M. Przytycka posted by 3 people chica marti bioinfo
	A mathematical theory of communication [My Copy] SIGMOBILE Mob. Comput. Commun. Rev., Vol. 5, No. 1. (January 2001), pp. 3-55. by C. E. Shannon posted by 32 people ekrsulov elsantosneto bastibarry1 tarokiritani abominable Dori2008 gokopal Information Evaluation, Organization, and Use juhop ajm srp33 hsyoon pprett Hans45 jhardin ssn ansobol chrn kristgy luispedro scottr davidmihalcik bigbossman lop michaelmampaey alexzeh ADMiRes dcoates almansa champak marti gfacciol