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	Dynamic personalities of proteins [My Copy] Nature, Vol. 450, No. 7172. (12 December 2007), pp. 964-972. by Katherine Henzler-Wildman, Dorothee Kern posted by 20 people saravan Diego_Prada xdeupi viktor21614 ruvido barry pavanghatty chad_davis allmensch choonpeng rsantana cjeans sobolevnrm baker-group wilbur mijam kjell phoenixzxl higueruelo GeeSharpMinor
	What is principal component analysis? [My Copy] Nature Biotechnology, Vol. 26, No. 3. (01 March 2008), pp. 303-304. by Markus Ringner posted by 73 people singhsh Jporci tnhh ruvido ucbcjbm daforerog Diego_Prada abellogin nguizard thegoose2 arsyed Zephyrus flips svozil VGreiff kaniko ssgong Yanno guhjy operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega zhouyu rsantana sobolevnrm baker-group fryanpan kengg rvosa FAB-lab dekay23 adacier Bioinformatics hpaces waghsk rchauhan pavanghatty kristgy jfr bibay2004 xingxu quianominorleo craigwilson06 ashko markusd dayjm dimka i-stevenson chrissp100 tharris ale mjoach HugoMarcelo jdiezperezj rrbarb Nici
	De Novo Computational Design of Retro-Aldol Enzymes [My Copy] Science, Vol. 319, No. 5868. (7 March 2008), pp. 1387-1391. by Lin Jiang, Eric A. Althoff, Fernando R. Clemente, et al.Lindsey Doyle, Daniela Rothlisberger, Alexandre Zanghellini, Jasmine L. Gallaher, Jamie L. Betker, Fujie Tanaka, Carlos F. Barbas, Donald Hilvert, Kendall N. Houk, Barry L. Stoddard, David Baker posted by 22 people barmak7282 baiaixi fralium Biocatalysis and Biotransformation qbin1304 alexknight barry aalibes jwm aprasad dgront zwang sobolevnrm structural_bioinformatics baker-group davidlott msuarezdiez scienbox ucbcjbm McCammon joseph_x_zhou cambray
	Characterization of Protein Conformational States by Normal-Mode Frequencies [My Copy] J. Am. Chem. Soc. (23 August 2007) by B. A. Hall, S. L. Kaye, A. Pang, R. Perera, P. C. Biggin posted by 11 people Diego_Prada Scis0000002 ubcg08l barry aqeel choonpeng sobolevnrm structural_bioinformatics Bioinformatics baker-group LamBras
	Protein-protein binding is often associated with changes in protonation state [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Aaron C. Mason, Jan H. Jensen posted by 10 people flbarroso onufriev csrocha bicko sobolevnrm baker-group RamuAnandakrishnan barry structural_bioinformatics McCammon
	REACH Coarse-Grained Biomolecular Simulation: Transferability between Different Protein Structural Classes [My Copy] Biophys. J. (9 May 2008), biophysj.108.131714. by Kei Moritsugu, Jeremy C. Smith posted by 10 people barry baker-group sobolevnrm A_Coletta_Thesis paulschlesinger choonpeng aqeel jmccammon McCammon rok
	Wordom: a program for efficient analysis of molecular dynamics simulations [My Copy] Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2625-2627. by Michele Seeber, Marco Cecchini, Francesco Rao, Giovanni Settanni, Amedeo Caflisch posted by 9 people guhjy barry tmmurali choonpeng hmk sobolevnrm structural_bioinformatics baker-group LamBras
	Calculation of protein-ligand binding free energy by using a polarizable potential [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 17. (29 April 2008), pp. 6290-6295. by Dian Jiao, Pavel A. Golubkov, Thomas A. Darden, Pengyu Ren posted by 9 people flbarroso onufriev jmccammon biehl sobolevnrm baker-group barry structural_bioinformatics McCammon
	Transition networks for modeling the kinetics of conformational change in macromolecules [My Copy] Current Opinion in Structural Biology In Theory and simulation / Macromolecular assemblages, Vol. 18, No. 2. (April 2008), pp. 154-162. by Frank Noé, Stefan Fischer posted by 9 people Diego_Prada aqeel barry sobolevnrm structural_bioinformatics baker-group paulschlesinger McCammon toerst
	Clustering Molecular Dynamics Trajectories: 1. Characterizing the Performance of Different Clustering Algorithms [My Copy] Journal of Chemical Theory and Computation, Vol. 3, No. 6. (1 November 2007), pp. 2312-2334. by Jianyin Shao, Stephen W. Tanner, Nephi Thompson, Thomas E. Cheatham posted by 13 people anuragsethi Diego_Prada scampos Structural Biology Group TorVergata oteri barry daevans sobolevnrm structural_bioinformatics baker-group LamBras allmensch GermanErlenkamp
	Flexibility and packing in proteins [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 3. (5 February 2002), pp. 1274-1279. by Bertil Halle posted by 11 people Diego_Prada edws barry baker-group sobolevnrm ana aqeel allmensch hmk structural_bioinformatics Bioinformatics
	Correlated substitution analysis and the prediction of amino acid structural contacts [My Copy] Brief Bioinform (13 November 2007), bbm052. by David S. Horner, Walter Pirovano, Graziano Pesole posted by 10 people mgomes qluo RebeccaHamer barry zwang sobolevnrm structural_bioinformatics Bioinformatics baker-group Lombardo_7
	Electrostatic rate enhancement and transient complex of protein-protein association [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 71, No. 1. (11 October 2008), pp. 320-335. by Ramzi Alsallaq, Huan-Xiang Zhou posted by 6 people structural_bioinformatics McCammon barry bicko sobolevnrm baker-group
	Protein Dynamism and Evolvability [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 203-207. by Nobuhiko Tokuriki, Dan S. Tawfik posted by 23 people tomhebbron anuragsethi ahmetbakan kevinchannon klexa lauresultan dbikard ibuch ramiro2k structural_bioinformatics McCammon barry pablocarb ramanuja baker-group sobolevnrm biomcgary hsekiguc VGreiff phoenixzxl zwang jdoconnell paulschlesinger
	Full correlation analysis of conformational protein dynamics [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Oliver F. Lange, Helmut Grubmüller posted by 9 people anuragsethi jeargle Diego_Prada softsimu barry choonpeng sobolevnrm baker-group LamBras
	The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. [My Copy] Nature biotechnology, Vol. 25, No. 11. (07 November 2007), pp. 1251-1255. by Barry Smith, Michael Ashburner, Cornelius Rosse, et al.Jonathan Bard, William Bug, Werner Ceusters, Louis J. Goldberg, Karen Eilbeck, Amelia Ireland, Christopher J. Mungall, OBI Consortium, Neocles Leontis, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta A. Sansone, Richard H. Scheuermann, Nigam Shah, Patricia L. Whetzel, Suzanna Lewis posted by 25 people beanformer druvus mqbphcw3 richardbickerton CameronNeylon nicklynch Scis0000002 jorisslob allysonlister tmmurali jfr dullhunk jandot cjeans leechuck sgoetz PunkRock sobolevnrm lenov baker-group AlexanderPico dansullivanblk dagmar marck fgibson
	Protein crystallography for non-crystallographers, or how to get the best (but not more) from published macromolecular structures [My Copy] FEBS Journal, Vol. 275, No. 1. (January 2008), pp. 1-21. by Wlodawer, Alexander, Minor, et al. Wladek, Dauter, Zbigniew, Jaskolski, Mariusz posted by 10 people klexa nanonan structural_bioinformatics McCammon barry baker-group sobolevnrm ae1054 aisyahrehan rph
	Pump-probe molecular dynamics as a tool for studying protein motion and long range coupling [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 2. (2006), pp. 347-361. by Kim Sharp, John J. Skinner posted by 7 people barry lna choonpeng sobolevnrm structural_bioinformatics Bioinformatics baker-group
	Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000204. by Duncan Hull, Steve R. Pettifer, Douglas B. Kell posted by 222 people gbouma welliegirl Dentistry suribe mordiano operon Horduna cyrille IgorP sachingarg claudiushauptmann ianturton tech4trainers radagabriel mfenner Zotero en español jalonsoarevalo StemCellWorkstation martica840527 agbiotec LinaMelo claudine acabezas aaltenburger sarelfa Anita13 Dannycoutinho tmar lucybuykx ltitodem dcombe christianholz schoeband dgovoni maren antonkratz mzkbnt girabbit mawds tlb56 sstose klexa n00c slr52 Journal picks jandot applebyb timhubbard yangjustinc CameronNeylon heliopais sarabatts aldra Prlwrlczkwsky CPAP amyfyn vellino ulrichs malkav30 cristiangutierrez rockrescue victorantoniomtz Tita NancyAbigail Nembrod jclau clarabermudez tanyacovi6 Health_Informatics jmohan polivares artaban421 nperoni eudominguezmartin nhoussos MARCOUNAM carelcad euanlawson furlong stevepettifer flipip23 virolog ZoeThomas pawelsobko tnhh kbkbk8 rickl nellapower mcentyre wujastyk beanformer msanchof2009 Herramientas20 dmaweb bhengeveld jpgrolle wsumthai daforerog Semantic-Social-Networks INK-SSCI-SCI@CiteuLike.org INK-SSCI-SCI quianominorleo tux2000 cogs eLearning in Leicester AJCann robsyme anthrogeek lmichan sainsworth hkimura western4uk cybob10 kevinemamy akriesch williamgunn mgh-lcs carlblesius NaCTeM Effie alhoori mikel_egana tilanka coldmeadow yas Tomste mseyfang fitzgeraldp2 fungal eduardod5 DavidG67 chenlc03 stempvoort lesikv jmueller17 sirexkat Koh akraemer thegoose kharke niallhaslam rdmagnuson JuanGiarrizzo pkonings jennialp lgibson rmasur GJNauta puchu rrbarb amarois mneeley MEHTRadiology dr_lee_xray IRTADOC zilvlan curthh mount_misery narroyo rdiaz treangen hpaces bumatic BerndBerndsen Département Hypermédia - Master NET esterhasz phreeza dbk rempeljl teachingaging cs02 joseph_x_zhou continea Rosetta fletchad Betelgeuse60 tomroper 1971biblio timrwatkins rschulz JLab BergmanLab cisevol ryan smithrise silberbauer natstreet pick600 xjlibod ukppdadsr robertlischke bookwormzz NIlz junwang4 taguchi tag McCammon barry kristgy caseybrown Gaetan bcondon lynnefox marekrud nuin sdgsilvana ckai1 guhjy neils norris Poverty Alleviation from Access to Knowledge jago druvus emayorga GeeSharpMinor fgibson structural_bioinformatics chad_davis Roswell Cancer Crosstalk Zephyrus leonardo dullhunk
	GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 3. (1 March 2008), pp. 435-447. by Berk Hess, Carsten Kutzner, David van der Spoel, Erik Lindahl posted by 25 people softsimu parnell rabio oteri krapnik robertvacha rodrigofaccioli pavanghatty janneb ZhangYinhe okapi flbarroso marceavi Structural Biology Group TorVergata A_Coletta_Thesis choonpeng Lombardo_7 jwm daevans mmuecke sobolevnrm baker-group r2s2 middledomain loison
	Structural flexibility in proteins: impact of the crystal environment [My Copy] Bioinformatics, Vol. 24, No. 4. (15 February 2008), pp. 521-528. by Konrad Hinsen posted by 8 people Diego_Prada mijogiffin barry sobolevnrm jlh64 baker-group scienbox McCammon
	Prediction of the structure of symmetrical protein assemblies [My Copy] Proceedings of the National Academy of Sciences (31 October 2007), 0702626104. by Ingemar Andre, Philip Bradley, Chu Wang, David Baker posted by 7 people jwm jmrivort cjeans zwang sobolevnrm Supramolecular baker-group
	Combining Efficient Conformational Sampling with a Deformable Elastic Network Model Facilitates Structure Refinement at Low Resolution [My Copy] Structure, Vol. 15, No. 12. (13 December 2007), pp. 1630-1641. by Gunnar F. Schroder, Axel T. Brunger, Michael Levitt posted by 6 people aqeel cjeans sobolevnrm jlh64 baker-group TOchi
	Analysis of the residue-residue coevolution network and the functionally important residues in proteins [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Byung-Chul Lee, Keunwan Park, Dongsup Kim posted by 10 people barry neils sobolevnrm structural_bioinformatics baker-group mingzhi penpen926 scienbox wilbur friendpine
	Multiple protein sequence alignment [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Jimin Pei posted by 8 people robfsouza agustinarce zwang TOchi paulschlesinger marck sobolevnrm baker-group
	Molecular dynamics simulations of nucleic acid-protein complexes. [My Copy] Current opinion in structural biology, Vol. 18, No. 2. (April 2008), pp. 194-199. by A. D. Mackerell, L. Nilsson posted by 6 people flbarroso ruvido zwang sobolevnrm baker-group phoenixzxl
	From the Cover: A dry ligand-binding cavity in a solvated protein [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 17. (29 April 2008), pp. 6296-6301. by Johan Qvist, Monika Davidovic, Donald Hamelberg, Bertil Halle posted by 7 people Lombardo_7 jmccammon barry structural_bioinformatics McCammon sobolevnrm baker-group
	A minimalist network model for coarse-grained normal mode analysis and its application to biomolecular x-ray crystallography. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (1 October 2008) by Mingyang Lu, Jianpeng Ma posted by 12 people baker-group sobolevnrm aqeel apaydin ruvido agrossfield Nielsen group skoddet structural_bioinformatics McCammon Bioinformatics barry
	Investigating protein dynamics in collective coordinate space [My Copy] Current Opinion in Structural Biology, Vol. 9, No. 2. (April 1999), pp. 164-169. by A. Kitao, N. Go posted by 8 people bmduggan Scis0000002 ttjoseph ffranca barry choonpeng sobolevnrm baker-group
	Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 32. (12 August 2008), pp. 11182-11187. by Kei-ichi Okazaki, Shoji Takada posted by 11 people oteri bmduggan xdeupi okapi aqeel raik ruvido structural_bioinformatics McCammon barry zwang
	A Systematic Methodology for Defining Coarse-Grained Sites in Large Biomolecules [My Copy] Biophysical Journal, Vol. 95, No. 11. (01 December 2008), pp. 5073-5083. by Z. Zhang, L. Lu, W. Noid, V. Krishna, J. Pfaendtner, G. Voth posted by 8 people okapi structural_bioinformatics McCammon barry sobolevnrm choonpeng agrossfield paulschlesinger
	Supercharging Proteins Can Impart Unusual Resilience [My Copy] J. Am. Chem. Soc., Vol. 129, No. 33. (22 August 2007), pp. 10110-10112. by M. S. Lawrence, K. J. Phillips, D. R. Liu posted by 6 people barry samjlord sobolevnrm structural_bioinformatics moernerlab baker-group
	Coarse-grained Models for Simulations of Multiprotein Complexes: Application to Ubiquitin Binding [My Copy] Journal of Molecular Biology, Vol. 375, No. 5. (01 February 2008), pp. 1416-1433. by Young C. Kim, Gerhard Hummer posted by 8 people okapi barry sobolevnrm structural_bioinformatics Bioinformatics baker-group iantunbridge mikaellund
	How Efficient Is Replica Exchange Molecular Dynamics? An Analytic Approach [My Copy] J. Chem. Theory Comput., Vol. 4, No. 4. (8 April 2008), pp. 626-636. by Hugh Nymeyer posted by 7 people agrossfield sobolevnrm baker-group loison barry structural_bioinformatics McCammon
	Determination of electrostatic interaction energies and protonation state populations in enzyme active sites [My Copy] Journal of Molecular Biology, Vol. In Press, Accepted Manuscript by Chresten R. Sondergaard, Lawrence P. Mcintosh, Gianluca Pollastri, Jens E. Nielsen posted by 6 people onufriev barry sobolevnrm structural_bioinformatics baker-group skoddet
	Salt-Mediated Electrostatics in the Association of TATA Binding Proteins to DNA: A Combined Molecular Mechanics/Poisson-Boltzmann Study [My Copy] Biophys. J., Vol. 94, No. 12. (15 June 2008), pp. 4634-4645. by Johan H. Bredenberg, Cristina Russo, Marcia O. Fenley posted by 5 people sobolevnrm baker-group barry McCammon structural_bioinformatics
	Recent advances in implicit solvent-based methods for biomolecular simulations. [My Copy] Current opinion in structural biology, Vol. 18, No. 2. (04 April 2008), pp. 140-148. by Jianhan Chen, Charles L. Brooks, Jana Khandogin posted by 10 people RamuAnandakrishnan mikaellund Structural Biology Group TorVergata oteri nickolay flbarroso choonpeng sobolevnrm baker-group onufriev
	Coarse-Grained Biomolecular Simulation with REACH: Realistic Extension Algorithm via Covariance Hessian☆ [My Copy] Biophysical Journal, Vol. 93, No. 10. (15 November 2007), pp. 3460-3469. by K. Moritsugu, J. Smith posted by 6 people Diego_Prada aqeel hmk sobolevnrm baker-group choonpeng
	Single-Molecule DNA Sequencing of a Viral Genome [My Copy] Science, Vol. 320, No. 5872. (4 April 2008), pp. 106-109. by Timothy D. Harris, Phillip R. Buzby, Hazen Babcock, et al.Eric Beer, Jayson Bowers, Ido Braslavsky, Marie Causey, Jennifer Colonell, James Dimeo, J. William Efcavitch, Eldar Giladi, Jaime Gill, John Healy, Mirna Jarosz, Dan Lapen, Keith Moulton, Stephen R. Quake, Kathleen Steinmann, Edward Thayer, Anastasia Tyurina, Rebecca Ward, Howard Weiss, Zheng Xie posted by 28 people haisent pachorip katholt alexknight jbhiatt JonD lisa1 mkikkawa frohike katiehumphry operon dchughes samjlord neils zwang cabbagezs kinestetika moernerlab Microbial-Ecology microbiology_nijmegen benlin caseybrown kjglennie melting austin ilyaf vmarshal guhjy
	Getting Started in Probabilistic Graphical Models [My Copy] PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e252. by Edoardo M. Airoldi posted by 16 people buyske mhamada guhjy balicea AbnerCYH stajich cjeans GustavoLacerda GeeSharpMinor sobolevnrm cabbagezs nklee baker-group biehl softsimu jfr
	Molecular dynamics -- potential of mean force calculations as a tool for understanding ion permeation and selectivity in narrow channels [My Copy] Biophysical Chemistry In Ion Hydration Special Issue, Vol. 124, No. 3. (1 December 2006), pp. 251-267. by Toby W. Allen, Olaf S. Andersen, Benoit Roux posted by 6 people ibuch barry sobolevnrm structural_bioinformatics Bioinformatics baker-group
	Kinetics, Statistics, and Energetics of Lipid Membrane Electroporation Studied by Molecular Dynamics Simulations [My Copy] Biophys. J. (9 May 2008), biophysj.108.129437. by Rainer A. Bockmann, Bert L. de Groot, Sergej Kakorin, Eberhard Neumann, Helmut Grubmuller posted by 5 people McCammon barry baker-group sobolevnrm paulschlesinger
	Geometric criteria of hydrogen bonds in proteins and identification of "bifurcated" hydrogen bonds. [My Copy] Protein Eng, Vol. 15, No. 5. (May 2002), pp. 359-363. by I. Y. Torshin, I. T. Weber, R. W. Harrison posted by 6 people barry medic0747 sobolevnrm structural_bioinformatics Bioinformatics baker-group
	Defining functional distances over gene ontology. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008), 50. by A. del Pozo, F. Pazos, A. Valencia posted by 13 people biomcgary MarcoAlvarez sgoetz wilbur barry tny grahamc sobolevnrm Bioinformatics baker-group barriot carlk guhjy
	Secondary Structure Bias in Generalized Born Solvent Models: Comparison of Conformational Ensembles and Free Energy of Solvent Polarization from Explicit and Implicit Solvation [My Copy] J. Phys. Chem. B, Vol. 111, No. 7. (22 February 2007), pp. 1846-1857. by D. R. Roe, A. Okur, L. Wickstrom, V. Hornak, C. Simmerling posted by 7 people RamuAnandakrishnan flbarroso baaden choonpeng sobolevnrm baker-group onufriev
	Fluorescence Imaging of Membrane Dynamics [My Copy] Annual Review of Biomedical Engineering, Vol. 10, No. 1. (2008), pp. 311-338. by Jay T. Groves, Raghuveer Parthasarathy, Martin B. Forstner posted by 6 people moernerlab samjlord ARobson zwang sobolevnrm baker-group
	Mutual Information Without the Influence of Phylogeny or Entropy Dramatically Improves Residue Contact Prediction [My Copy] Bioinformatics, Vol. 24, No. 3. (5 December 2007), pp. btm604-340. by S. D. Dunn, L. M. Wahl, G. B. Gloor posted by 7 people mgomes qluo bicko sobolevnrm baker-group zwang marck
	Detecting coevolution in and among protein domains. [My Copy] PLoS computational biology, Vol. 3, No. 11. (1 November 2007), e211. by Chen-Hsiang H. Yeang, David Haussler posted by 15 people dfdong martainn balicea skhadar zwang sobolevnrm niallhaslam baker-group hpaces mingzhi Ema phoenixzxl penpen926 friendpine pradiptaray
	Structural diversity of domain superfamilies in the CATH database. [My Copy] Journal of molecular biology, Vol. 360, No. 3. (14 July 2006), pp. 725-741. by Gabrielle A. Reeves, Timothy J. Dallman, Oliver C. Redfern, Adrian Akpor, Christine A. Orengo posted by 10 people martainn yuslinaz barry marcius sobolevnrm structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF baker-group
	Molecular Dynamics Simulation of the Escherichia coli NikR Protein: Equilibrium Conformational Fluctuations Reveal Interdomain Allosteric Communication Pathways [My Copy] Journal of Molecular Biology, Vol. 378, No. 5. (16 May 2008), pp. 1155-1173. by Michael J. Bradley, Peter T. Chivers, Nathan A. Baker posted by 5 people sobolevnrm baker-group skoddet barry structural_bioinformatics
	Universally Sloppy Parameter Sensitivities in Systems Biology Models [My Copy] PLoS Comput Biol, Vol. 3, No. 10. (5 October 2007), e189. by Ryan N. Gutenkunst, Joshua J. Waterfall, Fergal P. Casey, Kevin S. Brown, Christopher R. Myers, James P. Sethna posted by 15 people dadiamah jjray arne Savage Lab, UCLA mhasoba Borelli cjryan biomcgary faisalm fishtank cjeans sobolevnrm baker-group afenley entropy
	The packing density in proteins: standard radii and volumes1 [My Copy] Journal of Molecular Biology, Vol. 290, No. 1. (02 July 1999), pp. 253-266. by Jerry Tsai, Robin Taylor, Cyrus Chothia, Mark Gerstein posted by 10 people sebk ana barry bicko blackbart medic0747 structural_bioinformatics Bioinformatics sobolevnrm baker-group
	The MARTINI Coarse-Grained Force Field: Extension to Proteins [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 5. (1 May 2008), pp. 819-834. by Luca Monticelli, Senthil K. Kandasamy, Xavier Periole, Ronald G. Larson, D. Peter Tieleman, Siewert-Jan Marrink posted by 17 people arnaucordomi dimka oteri sunrise flbarroso Structural Biology Group TorVergata A_Coletta_Thesis krapnik Molecular dynamics in MSU Marine middledomain sobolevnrm baker-group Ema aqeel DanielParton softsimu
	Sampling of near-native protein conformations during protein structure refinement using a coarse-grained model, normal modes, and molecular dynamics simulations [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Andrew W. Stumpff-Kane, Katarzyna Maksimiak, Michael S. Lee, Michael Feig posted by 4 people barry sobolevnrm structural_bioinformatics baker-group
	Acidic range titration of HEWL using a constant-pH molecular dynamics method [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 72, No. 1. (2008), pp. 289-298. by Miguel Machuqueiro, António M. Baptista posted by 6 people flbarroso scampos sobolevnrm baker-group sunhwan skoddet
	Multiscale complex network of protein conformational fluctuations in single-molecule time series [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 2. (15 January 2008), pp. 536-541. by Chun-Biu Li, Haw Yang, Tamiki Komatsuzaki posted by 6 people Diego_Prada ruvido sobolevnrm baker-group biehl hsekiguc
	Control of Membrane Fusion Mechanism by Lipid Composition: Predictions from Ensemble Molecular Dynamics [My Copy] PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e220. by Peter M. Kasson, Vijay S. Pande posted by 5 people zwang sobolevnrm paulschlesinger baker-group Ema
	Optimization of electrostatic interactions in protein-protein complexes. [My Copy] Biophysical journal, Vol. 93, No. 10. (15 November 2007), pp. 3340-3352. by K. Brock, K. Talley, K. Coley, P. Kundrotas, E. Alexov posted by 6 people flbarroso timg dfgreen choonpeng sobolevnrm baker-group
	Illuminating the mechanistic roles of enzyme conformational dynamics [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 46. (13 November 2007), pp. 18055-18060. by Jeffrey A. Hanson, Karl Duderstadt, Lucas P. Watkins, et al.Sucharita Bhattacharyya, Jason Brokaw, Jhih-Wei Chu, Haw Yang posted by 9 people kjell protein_Dyn joseph_x_zhou quanwang toerst barry sobolevnrm baker-group biehl
	The origin of protein interactions and allostery in colocalization. [My Copy] Nature, Vol. 450, No. 7172. (13 December 2007), pp. 983-990. by John Kuriyan, David Eisenberg posted by 8 people yanjiang ynaito cjeans sobolevnrm baker-group mingzhi phoenixzxl higueruelo
	Scoring residue conservation. [My Copy] Proteins, Vol. 48, No. 2. (1 August 2002), pp. 227-241. by W. S. Valdar posted by 9 people barry pansapiens bicko sriram_s cjeans sobolevnrm structural_bioinformatics Bioinformatics marti
	The Modular Organization of Domain Structures: Insights into Protein–Protein Binding [My Copy] PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e239. by Del, Pablo Carbonell posted by 10 people bicko chad_davis choonpeng grahamc cjeans zwang niallhaslam biehl marti carlk
	Analysis of X-ray and neutron scattering from biomacromolecular solutions [My Copy] Current Opinion in Structural Biology In Carbohydrates and glycoconjugates / Biophysical methods, Vol. 17, No. 5. (October 2007), pp. 562-571. by Maxim V. Petoukhov, Dmitri I. Svergun posted by 5 people dgront choonpeng sobolevnrm CameronNeylon baker-group
	Association of Aminoglycosidic Antibiotics with the Ribosomal A-Site Studied with Brownian Dynamics [My Copy] J. Chem. Theory Comput., Vol. 4, No. 4. (8 April 2008), pp. 549-559. by Maciej Długosz, Jan M. Antosiewicz, Joanna Trylska posted by 4 people sobolevnrm baker-group barry McCammon
	Protonation free energy levels in complex molecular systems [My Copy] Biopolymers, Vol. 9999, No. 9999. (2007), NA. by Jan M. Antosiewicz posted by 4 people sobolevnrm baker-group barry McCammon
	Coarse-grained models of protein folding: toy models or predictive tools? [My Copy] Curr Opin Struct Biol (19 December 2007) by Cecilia Clementi posted by 5 people flbarroso choonpeng sobolevnrm baker-group nh
	The relaxed complex method: Accommodating receptor flexibility for drug design with an improved scoring scheme. [My Copy] Biopolymers, Vol. 68, No. 1. (January 2003), pp. 47-62. by J. H. Lin, A. L. Perryman, J. R. Schames, J. A. McCammon posted by 9 people karinaecomp barry blackbart kazemi sobolevnrm structural_bioinformatics Bioinformatics baker-group LamBras
	HingeProt: Automated prediction of hinges in protein structures [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Ugur Emekli, Dina Schneidman-Duhovny, Haim J. Wolfson, Ruth Nussinov, Turkan Haliloglu posted by 5 people barry sobolevnrm baker-group willpitt higueruelo
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	Molecular Dynamics Simulations of Discoidal Bilayers Assembled from Truncated Human Lipoproteins [My Copy] Biophys. J., Vol. 88, No. 1. (1 January 2005), pp. 548-556. by Amy Y. Shih, Ilia G. Denisov, James C. Phillips, Stephen G. Sligar, Klaus Schulten posted by 5 people baker-group sobolevnrm paulschlesinger gjuggler softsimu
	Structural systems biology: modelling protein interactions. [My Copy] Nature reviews. Molecular cell biology, Vol. 7, No. 3. (March 2006), pp. 188-197. by Patrick Aloy, Robert B. Russell posted by 28 people flbarroso timg chica Scis0000002 ubcg08l ana aalibes bicko xico dgront drastic choonpeng henschel ruvido massivemayhem cat_worth fishtank iris_2001 gvuister lpfernandes structural_bioinformatics Bioinformatics WetBiology Evangelia andreas_foersch higueruelo chad_davis jteyra
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	Application of principal component analysis in protein unfolding: An all-atom molecular dynamics simulation study [My Copy] The Journal of Chemical Physics, Vol. 127, No. 16. (2007) by Atanu Das, Chaitali Mukhopadhyay posted by 4 people choonpeng sobolevnrm paulschlesinger baker-group
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	Coarse Master Equations for Peptide Folding Dynamics [My Copy] J. Phys. Chem. B (31 January 2008) by N. V. Buchete, G. Hummer posted by 5 people Diego_Prada apaydin ruvido sobolevnrm baker-group
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	Benchmarking pKa Prediction Methods for Residues in Proteins [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 6. (1 June 2008), pp. 951-966. by Courtney L. Stanton, Kendall N. Houk posted by 6 people scampos flbarroso franklu310 onufriev sobolevnrm baker-group
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	Close Correspondence between the Motions from Principal Component Analysis of Multiple HIV-1 Protease Structures and Elastic Network Modes. [My Copy] Structure, Vol. 16, No. 2. (12 February 2008), pp. 321-330. by Lei Yang, Guang Song, Alicia Carriquiry, Robert L L. Jernigan posted by 3 people choonpeng sobolevnrm baker-group
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