carlk's Top Recommendations

These recommendations were last updated about 3 hours ago.

	Physical protein-protein interactions predicted from microarrays [My Copy] Bioinformatics, Vol. 24, No. 22. (15 November 2008), pp. 2608-2614. by Ta-tsen Soong, Kazimierz O. Wrzeszczynski, Burkhard Rost posted by 13 people jperkins kiekyon jfr cgaugain guhjy saket iris_2001 pengchy natstreet grahamc phoenixzxl neils renatomilani
	Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes. [My Copy] American journal of human genetics, Vol. 78, No. 6. (June 2006), pp. 1011-1025. by Lude Franke, Harm van Bakel, Like Fokkens, Edwin D. de Jong, Michael Egmont-Petersen, Cisca Wijmenga posted by 13 people frohike eesruiz saket agonzale jfr snuppepuppan guhjy lfriedl tabu samal mmt raiyar kdl
	Identifying functional modules using expression profiles and confidence-scored protein interactions [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1158-1164. by Igor Ulitsky, Ron Shamir posted by 5 people jfr yaredo saket tmmurali phoenixzxl
	Predicting and Validating Protein Interactions Using Network Structure [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (25 July 2008), e1000118. by Pao-Yang Chen, Charlotte M. Deane, Gesine Reinert posted by 6 people TRHvidsten icq242500260 phoenixzxl roys zwang mingzhi
	Evolution of Complex Modular Biological Networks [My Copy] PLoS Comput Biol, Vol. 4, No. 2. (8 February 2008), e23. by Arend Hintze, Christoph Adami posted by 9 people jeargle wangbo rouault saket grahamc laughcry rcaze alhufton phoenixzxl
	Walking the interactome for prioritization of candidate disease genes. [My Copy] American journal of human genetics, Vol. 82, No. 4. (April 2008), pp. 949-958. by Sebastian Köhler, Sebastian Bauer, Denise Horn, Peter N. Robinson posted by 7 people daforerog saket jfr kluck daed guhjy raiyar
	Information flow analysis of interactome networks. [My Copy] PLoS computational biology, Vol. 5, No. 4. (10 April 2009), e1000350. by Patrycja Vasilyev V. Missiuro, Kesheng Liu, Lihua Zou, et al.Brian C. Ross, Guoyan Zhao, Jun S. Liu, Hui Ge posted by 21 people lptolik jfr freesci flbarroso peteruetz phoenixzxl robfsouza reyez VGreiff colmryan baker-group sobolevnrm hryk shikin dswan fgibson coela ddahlem mstumpf zwang friendpine
	Predicting disease genes using protein-protein interactions. [My Copy] Journal of medical genetics, Vol. 43, No. 8. (August 2006), pp. 691-698. by M. Oti, B. Snel, M. A. Huynen, H. G. Brunner posted by 9 people daforerog saket diamantis winterschlaefer bicko jiny svdate xingxu balicea
	A survey of available tools and web servers for analysis of protein-protein interactions and interfaces [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 217-232. by Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gursoy, Ruth Nussinov posted by 16 people dfdong jinghu_fandm daforerog qluo SaraNasser mikaellund reyez diamantis apaydin structural_bioinformatics McCammon Bioinformatics barry semin renatomilani svozil
	Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles [My Copy] Proceedings of the National Academy of Sciences of the United States of America In Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550. by Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha, et al.Sayan Mukherjee, Benjamin L. Ebert, Michael A. Gillette, Amanda Paulovich, Scott L. Pomeroy, Todd R. Golub, Eric S. Lander, Jill P. Mesirov posted by 53 people mysickova buyske bertelsen Jporci gbloeb miskar giovenko greg dolchan pattersonee mhamidi jperkins zufar ptrobajo antonkratz yaredo tmmurali VGreiff daforerog paszkows ipark-kaist ajbattle jessopher askrajiv idonaldson ihpark chrisamiller dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet Bioinformatics BioinfoCIPF GeschwindLab Indigene heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH
	Predicting protein function from domain content [My Copy] Bioinformatics (30 June 2008), btn312. by Kristoffer Forslund, Erik L. Sonnhammer posted by 6 people phoenixzxl laurenbragg saket druvus zwang reyez
	Align human interactome with phenome to identify causative genes and networks underlying disease families. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 1. (1 January 2009), pp. 98-104. by Xuebing Wu, Qifang Liu, Rui Jiang posted by 6 people daforerog jfr saket druvus guhjy grahamc
	A text-mining analysis of the human phenome. [My Copy] European journal of human genetics : EJHG, Vol. 14, No. 5. (May 2006), pp. 535-542. by Marc A. van Driel, Jorn Bruggeman, Gert Vriend, Han G. Brunner, Jack A. Leunissen posted by 10 people daed daforerog saket jiny guhjy yas dejori T_lab ic4 generif_paper
	Revisiting ldquoscale-freerdquo networks [My Copy] BioEssays, Vol. 27, No. 10. (October 2005), pp. 1060-1068. by Evelyn F. Keller posted by 19 people zufar panisson logics of knowledge A_Olympia AbnerCYH saket dartar dpf cmmorel yish yoh merazzle andreacapocci jmarcelino mathgamespatterns dtl vds-arg eni thecolourblue
	Evolutionary plasticity of genetic interaction networks [My Copy] Nat Genet, Vol. 40, No. 4. (April 2008), pp. 390-391. by Julia Tischler, Ben Lehner, Andrew G. Fraser posted by 9 people dakelley saket aheilbut caseybrown smgomez GomezLab ptrobajo emptyhb zwang
	Cohesive versus Flexible Evolution of Functional Modules in Eukaryotes [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (30 January 2009), e1000276. by Like Fokkens, Berend Snel posted by 3 people biomcgary saket grahamc
	Identification of functional modules from conserved ancestral protein protein interactions [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i149-158. by Janusz Dutkowski, Jerzy Tiuryn posted by 3 people saket grahamc Pao-Yang
	A core-attachment based method to detect protein complexes in PPI networks [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 169. by Min Wu, Xiaoli Li, Chee K. Kwoh, See K. Ng posted by 3 people grahamc chocolate2009 reyez
	Estimating the number of clusters in a dataset via the gap statistic [My Copy] (2000) by R. Tibshirani, G. Walther, T. Hastie posted by 7 people saket balajis archroad aviad_work sugarexpletive ykuoka frohike
	Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 472. by Tao Xu, LinFang Du, Yan Zhou posted by 8 people Borsti MarcoAlvarez sgoetz cgaugain saket kshameer barriot phoenixzxl
	The modular nature of genetic diseases [My Copy] Clinical Genetics, Vol. 71, No. 1. (January 2007), pp. 1-11. by Oti, , Brunner, posted by 5 people daforerog saket jiny guhjy barriot
	How to infer gene networks from expression profiles. [My Copy] Molecular systems biology, Vol. 3 (13 February 2007) by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo posted by 43 people frohike Jporci beete tonamswish zufar nicholasflann icq242500260 guhjy Zephyrus antonkratz phoenixzxl bertelsen isimpson daforerog poirel agonzale roys Neeperando APRegier rdiaz klo Borelli Jarman Lab ggallone ptrobajo druvus cswinburne jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet EBI-regulation Plantandetc heliopais mariakmejia tmmurali
	The origins and evolution of functional modules: lessons from protein complexes. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 361, No. 1467. (29 March 2006), pp. 507-517. by Jose B. Pereira-Leal, Emmanuel D. Levy, Sarah A. Teichmann posted by 7 people biomcgary saket agustinarce bicko choonpeng cjeans cmzmasek
	Network biology: understanding the cell's functional organization. [My Copy] Nature reviews. Genetics, Vol. 5, No. 2. (February 2004), pp. 101-113. by Albert-László L. Barabási, Zoltán N. Oltvai posted by 51 people schwartzjmc daforerog fastjoe23 arsyed thepogoman mtagaya camster snuppepuppan dbk greg guhjy LeightonP hununu felciano mague kuhn textoris rhem1224 lfriedl balajis alexg wnpx jknabe adepace nickluscombe bundschu awooga jdiggans jeremymiller uprock timflutre mikaelhuss gcalda grahamc fishtank jayster4 naegele streptomyces dbk-lab kdl EisenLab TCR_Signaling EBI-regulation SysbioMPI-TCells GeschwindLab generif_paper Evangelia heliopais shikin GeneGo hryk
	Graph clustering [My Copy] Computer Science Review, Vol. 1, No. 1. (August 2007), pp. 27-64. by S. Schaeffer posted by 10 people stharward swp09 wiedenhoeft roys pbellec saket bertuol The Cyclops Group qwermish AbnerCYH
	Evolutionary dynamics on graphs [My Copy] Nature, Vol. 433, No. 7023. (20 January 2005), pp. 312-316. by Erez Lieberman, Christoph Hauert, Martin A. Nowak posted by 25 people cosmizer Soslab halukbingol anarinsk vtraag qwermish mague bpb Borelli shivakumar3_14 cmm pbellec kehan zono jaspervoskuilen timflutre marcusfrean biodiversity_conservation Bioinformatics FAB-lab GrassBase tomrevilla saket balicea davidchavalarias
	An in silico method for detecting overlapping functional modules from composite biological networks [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Ioannis Maraziotis, Konstantina Dimitrakopoulou, Anastasios Bezerianos posted by 8 people dolchan jfr diamantis imina saket renatomilani lptolik jonesn
	FunSpec: a web-based cluster interpreter for yeast. [My Copy] BMC Bioinformatics, Vol. 3, No. 1. (13 November 2002) by M. D. Robinson, J. Grigull, N. Mohammad, T. R. Hughes posted by 3 people saket dragonrez ellakat
	Cluster analysis and display of genome-wide expression patterns [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 25. (8 December 1998), pp. 14863-14868. by Michael B. Eisen, Paul T. Spellman, Patrick O. Brown, David Botstein posted by 41 people frohike ottermanns npozo antonkratz potatongy drungows colmryan jplatig rsaito Neeperando baldigroup daforerog karinlag ronglais operon Borelli pengchy macowell ggrot miguel textoris okarsligil pcahan1 lfriedl balajis nuke2005 lyongu maryee wnpx nirfriedman dquest karfunkel kdl Bioinformatics BUiGEM dps kintoki jo_davies tvdbulck bozdagd roys
	Community detection in graphs [My Copy] (3 Jun 2009) by Santo Fortunato posted by 18 people Soslab halukbingol mjb ecome AaronMcDaid saket pdlug dpf Bolozna lawraga Kovanen marinari Diego_Prada juhop janpaniev acrmartins aheilbut deanmalmgren
	Integrating and Annotating the Interactome using the MiMI plugin for Cytoscape. [My Copy] Bioinformatics (Oxford, England) (23 September 2008) by Jing Gao, Alex S S. Ade, V Glenn G. Tarcea, et al.Terry E E. Weymouth, Barbara R R. Mirel, H V V. Jagadish, David J J. States posted by 6 people jfr druvus lptolik Bioinformatics dswan guhjy
	Identifying gene-disease associations using centrality on a literature mined gene-interaction network [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i277-285. by Arzucan Ozgur, Thuy Vu, Gunes Erkan, Dragomir R. Radev posted by 6 people suzhan mitko saket yyby maralena guhjy
	Discovering disease-genes by topological features in human proteinprotein interaction network [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2800-2805. by Xu, Jianzhen, Li, Yongjin posted by 7 people saket diamantis marcius skhadar ealloza BioinfoCIPF SGU-CIPF
	Computational cluster validation in post-genomic data analysis [My Copy] Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3201-3212. by Julia Handl, Joshua Knowles, Douglas B. Kell posted by 7 people srp33 gangcai santiago isimpson saket frohike aviad_work
	Homogeneous decomposition of protein interaction networks: refining the description of intra-modular interactions [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 926-932. by Geraldine Del Mondo, Damien Eveillard, Irena Rusu posted by 4 people saket dpsuslo8 kintoki phoenixzxl
	A computational system to select candidate genes for complex human traits. [My Copy] Bioinformatics, Vol. 23, No. 9. (1 May 2007), pp. 1132-1140. by K. J. Gaulton, K. L. Mohlke, T. J. Vision posted by 2 people saket jiny
	The Landscape of Human Proteins Interacting with Viruses and Other Pathogens [My Copy] PLoS Pathog In PLoS Pathog, Vol. 4, No. 2. (15 February 2008), e32. by Matthew D. Dyer, T. M. Murali, Bruno W. Sobral posted by 4 people saket dansullivanblk cerca GeeSharpMinor
	Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists [My Copy] Nucl. Acids Res., Vol. 37, No. 1. (1 January 2009), pp. 1-13. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted by 51 people icecrown natstreet provero psique darian chasmand hzoltan ipark-kaist giovenko lwaldron jcaddy antonkratz Zephyrus shikin yaredo tonamswish ddunbar robfsouza Keywan daforerog ptrobajo rdiaz bertelsen Bioinformatics - CRUK Stew inesdesantiago heliopais ConklinLab AlexanderPico aviad_work ekotelnikova frohike aramesh2 jfr zufar ilyashl dolchan paszkows lptolik thomaskelder AbnerCYH neils tmmurali ealloza barriot druvus renatomilani pengchy phoenixzxl guhjy sjcockell
	Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network [My Copy] Genome Biology, Vol. 10, No. 9. (03 September 2009), R91. by Bolan Linghu, Evan Snitkin, Zhenjun Hu, Yu Xia, Charles DeLisi posted by 8 people mchelen fstrozzi Orengo Group Journal Picks bdessailly farhat saket daforerog barriot
	Interactome and Gene Ontology provide congruent yet subtly different views of a eukaryotic cell [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 69. by Antonio Marco, Ignacio Marin posted by 5 people saket fgibson kiekyon sjcockell barriot
	Update of the G2D tool for prioritization of gene candidates to inherited diseases. [My Copy] Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007) by C. Perez-Iratxeta, P. Bork, M. A. Andrade-Navarro posted by 5 people henk-cul daforerog saket guhjy daed
	A new test set for validating predictions of protein-ligand interaction. [My Copy] Proteins, Vol. 49, No. 4. (1 December 2002), pp. 457-471. by J. W. Nissink, C. Murray, M. Hartshorn, M. L. Verdonk, J. C. Cole, R. Taylor posted by 6 people flbarroso BragilMassoud yongzhao blackbart ramensky TSRI_MGL
	A data integration methodology for systems biology. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 48. (29 November 2005), pp. 17296-17301. by D. Hwang, A. G. Rust, S. Ramsey, et al.J. J. Smith, D. M. Leslie, A. D. Weston, P. de Atauri, J. D. Aitchison, L. Hood, A. F. Siegel, H. Bolouri posted by 27 people shigepong daforerog shikin jimineep Jarman Lab ggallone brian tmmurali dragonrez okarsligil jfr lfriedl Schmidtc eweaver wnpx biosv Sharpshoot noano mbeautru reidy grahamc GeeSharpMinor nedwards kdl Bioinformatics JJJ athleem
	Graph-based consensus clustering for class discovery from gene expression data [My Copy] Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2888-2896. by Zhiwen Yu, Hau-San Wong, Hongqiang Wang posted by 5 people saket guhjy jfr aviad_work dps
	On Modularity Clustering [My Copy] Knowledge and Data Engineering, IEEE Transactions on In Knowledge and Data Engineering, IEEE Transactions on, Vol. 20, No. 2. (2008), pp. 172-188. by U. Brandes, D. Delling, M. Gaertler, et al.R. Gorke, M. Hoefer, Z. Nikoloski, D. Wagner posted by 2 people saket lawraga
	Microscopic evolution of social networks [My Copy] In KDD '08: Proceeding of the 14th ACM SIGKDD international conference on Knowledge discovery and data mining (2008), pp. 462-470. by Jure Leskovec, Lars Backstrom, Ravi Kumar, Andrew Tomkins posted by 12 people dschafer kaarsinogen nazimkeven andreacapocci tnhh aalves senseable-urb dartar studentx elsantosneto saket agulli
	Network-based model weighting to detect multiple loci influencing complex diseases [My Copy] Human Genetics, Vol. 124, No. 3. (1 October 2008), pp. 225-234. by Wei Pan posted by 4 people guhjy saket yyby djkt
	A similarity-based method for genome-wide prediction of disease-relevant human genes. [My Copy] Bioinformatics (Oxford, England), Vol. 18 Suppl 2 (2002) by J. Freudenberg, P. Propping posted by 2 people saket jiny
	Structure and evolution of online social networks [My Copy] In KDD '06: Proceedings of the 12th ACM SIGKDD international conference on Knowledge discovery and data mining (2006), pp. 611-617. by Ravi Kumar, Jasmine Novak, Andrew Tomkins posted by 51 people 07111013 saket Iully meikipp thegoose andreacapocci pms dexter_shen pkusjcer yiah aalves bomi apepe adeenaa kerriciminera agulli A_Olympia rickl elsantosneto ladamic dartar donade styliani senioritis krisl merazzle zpinhead azygmunt manu_ds sjones mook3000 abl mylit rcrane yihsuan cursonivel1 dneal xingxu Philosophy_of_Information Blog_and_Wiki_Research AGH-IISG cursonivel1 Networked Systems Lab Social Web jac191 katja lcaroso cauimkrao rezaferry rrbarb tnhh
	Analysis of protein sequence and interaction data for candidate disease gene prediction [My Copy] Nucl. Acids Res., Vol. 34, No. 19. (14 November 2006), pp. e130-e130. by Richard A. George, Jason Y. Liu, Lina L. Feng, Robert J. Bryson-Richardson, Diane Fatkin, Merridee A. Wouters posted by 2 people daforerog saket
	Community Structure in Graphs [My Copy] (17 Dec 2007) by Santo Fortunato, Claudio Castellano posted by 6 people vtraag saket cgaugain travieso smc-infm castellano
	Model-based clustering for social networks [My Copy] Journal of the Royal Statistical Society: Series A (Statistics in Society), Vol. 170, No. 2. (March 2007), pp. 301-354. by Mark S. Handcock, Adrian E. Raftery, Jeremy M. Tantrum posted by 7 people makrehchi saket galyardt ctacmo Statistics_and_Social_Science Biostatistics Pao-Yang
	Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome [My Copy] Genome Biology, Vol. 6, No. 5. (2005), R40. by Arun Ramani, Razvan Bunescu, Raymond Mooney, Edward Marcotte posted by 25 people Complex Networks fesousa Jarman Lab ggallone yaredo setar tmmurali dragonrez okarsligil lfriedl ccots balajis maryee brant opheliav davidandrzej wnpx rlhsiao bundschu mikaelhuss raiyar grahamc kdl Bioinformatics generif_paper
	Computing communities in large networks using random walks (long version) [My Copy] (12 Dec 2005) by Pascal Pons, Matthieu Latapy posted by 4 people saket cgaugain ansobol ltabourier
	Discovery of protein interaction networks shared by diseases. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2007), pp. 76-87. by L. Sam, Y. Liu, J. Li, C. Friedman, Y. A. Lussier posted by 2 people saket jfr
	Graphs over time: densification laws, shrinking diameters and possible explanations [My Copy] In KDD '05: Proceedings of the eleventh ACM SIGKDD international conference on Knowledge discovery in data mining (2005), pp. 177-187. by Jure Leskovec, Jon Kleinberg, Christos Faloutsos posted by 17 people HenryR A_Olympia ChaTo scis0000001 bigbossman griota somasanyal flavian_vasile PaulBHartzog koles Philosophy_of_Information Blog_and_Wiki_Research mpotamias theus styliani saket balicea
	Finding local community structure in networks [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 72, No. 2. (2005) by Aaron Clauset posted by 3 people kubyaddi saket dpf
	Semi-supervised graph clustering: a kernel approach [My Copy] In ICML '05: Proceedings of the 22nd international conference on Machine learning (2005), pp. 457-464. by Brian Kulis, Sugato Basu, Inderjit Dhillon, Raymond Mooney posted by 4 people flykeysky MarcoAlvarez zufar saket
	Deciphering the connectivity structure of biological networks using MixNet [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 6. (2009), S17. by Franck Picard, Vincent Miele, Jean J. Daudin, Ludovic Cottret, Stephane Robin posted by 3 people saket Orengo Group Journal Picks sillitoe
	Cost-effective outbreak detection in networks [My Copy] In KDD '07: Proceedings of the 13th ACM SIGKDD international conference on Knowledge discovery and data mining (2007), pp. 420-429. by Jure Leskovec, Andreas Krause, Carlos Guestrin, Christos Faloutsos, Jeanne VanBriesen, Natalie Glance posted by 6 people andreacapocci krisl kubyaddi ladamic domakesaythink saket
	Centroid estimation in discrete high-dimensional spaces with applications in biology [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 9. (4 March 2008), pp. 3209-3214. by Luis E. Carvalho, Charles E. Lawrence posted by 4 people saket tny aitter sconlan
	On the quality of tree-based protein classification. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 9. (1 May 2005), pp. 1876-1890. by B. Lazareva-Ulitsky, K. Diemer, P. D. Thomas posted by 2 people saket druvus
	Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. [My Copy] Nature, Vol. 415, No. 6868. (10 January 2002), pp. 180-183. by Yuen Ho, Albrecht Gruhler, Adrian Heilbut, et al.Gary D. Bader, Lynda Moore, Sally-Lin L. Adams, Anna Millar, Paul Taylor, Keiryn Bennett, Kelly Boutilier, Lingyun Yang, Cheryl Wolting, Ian Donaldson, Søren Schandorff, Juanita Shewnarane, Mai Vo, Joanne Taggart, Marilyn Goudreault, Brenda Muskat, Cris Alfarano, Danielle Dewar, Zhen Lin, Katerina Michalickova, Andrew R. Willems, Holly Sassi, Peter A. Nielsen, Karina J. Rasmussen, Jens R. Andersen, Lene E. Johansen, Lykke H. Hansen, Hans Jespersen, Alexandre Podtelejnikov, Eva Nielsen, Janne Crawford, Vibeke Poulsen, Birgitte D. Sørensen, Jesper Matthiesen, Ronald C. Hendrickson, Frank Gleeson, Tony Pawson, Michael F. Moran, Daniel Durocher, Matthias Mann, Christopher W. Hogue, Daniel Figeys, Mike Tyers posted by 17 people lpfernandes SarahW lawraga semin okarsligil bicko shivaram lfriedl chad_davis lyongu gcalda raiyar helenamistry kdl Bioinformatics steinmetzlab iris_2001
	Statistical properties of community structure in large social and information networks [My Copy] In WWW '08: Proceeding of the 17th international conference on World Wide Web (2008), pp. 695-704. by Jure Leskovec, Kevin J. Lang, Anirban Dasgupta, Michael W. Mahoney posted by 7 people dschafer saket laurobeltrao agulli tnhh ChaTo beete
	Graph Clustering Via a Discrete Uncoupling Process [My Copy] SIAM Journal on Matrix Analysis and Applications, Vol. 30, No. 1. (2008), pp. 121-141. by Stijn Van Dongen posted by 3 people kintoki librain saket
	A domain interaction map based on phylogenetic profiling. [My Copy] Journal of molecular biology, Vol. 344, No. 5. (10 December 2004), pp. 1331-1346. by P. Pagel, P. Wong, D. Frishman posted by 2 people balicea saket
	Graph-based analysis of protein-protein interaction data sets [My Copy] (2007) by Pengjun Pei
	Social Insect Networks [My Copy] Science, Vol. 301, No. 5641. (26 September 2003), pp. 1867-1870. by Jennifer H. Fewell posted by 4 people jbsaltz saket lshaw artur
	The National Center for Biotechnology Information's Protein Clusters Database. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (January 2009) by W. Klimke, R. Agarwala, A. Badretdin, et al.S. Chetvernin, S. Ciufo, B. Fedorov, B. Kiryutin, K. O'Neill, W. Resch, S. Resenchuk, S. Schafer, I. Tolstoy, T. Tatusova posted by 2 people saket guhjy
	A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction [My Copy] Journal of Computational Biology, Vol. 13, No. 2. (March 2006), pp. 320-335. by Dannie Durand, Bjarni V. Halldorsson, Benjamin Vernot posted by 2 people parnell saket
	Constrained k-means clustering with background knowledge [My Copy] In Proc. 18th International Conf. on Machine Learning, Vol. 2001 (2001), pp. 577-584. by Kiri Wagsta, Claire Cardie, Stefan Schroedl posted by 2 people vlachmore saket
	A Network-Based Method for Predicting Disease-Causing Genes [My Copy] Journal of Computational Biology, Vol. 16, No. 2. (2009), pp. 181-189. by Shaul Karni, Hermona Soreq, Roded Sharan posted by 3 people guhjy saket diging_data
	Genetic susceptibility for breast cancer: how many more genes to be found? [My Copy] Critical reviews in oncology/hematology, Vol. 63, No. 2. (August 2007), pp. 125-149. by R. A. Oldenburg, H. Meijers-Heijboer, C. J. Cornelisse, P. Devilee posted by 1 person saket
	Protein Function Prediction Based on Patterns in Biological Networks [My Copy] Research in Computational Molecular Biology (2008), pp. 197-213. by Mustafa Kirac, Gultekin Ozsoyoglu posted by 1 person saket
	An Impossibility Theorem for Clustering [My Copy] (2002), pp. 446-453. by Jon Kleinberg posted by 1 person saket
	Hierarchical mixture models: a probabilistic analysis [My Copy] In KDD '07: Proceedings of the 13th ACM SIGKDD international conference on Knowledge discovery and data mining (2007), pp. 580-589. by Mark Sandler posted by 3 people garyfeng takeha-e ReadingLab
	Scalable modeling of real graphs using Kronecker multiplication [My Copy] In ICML '07: Proceedings of the 24th international conference on Machine learning (2007), pp. 497-504. by Jure Leskovec, Christos Faloutsos posted by 2 people saket kohei-h
	Finding the Number of Clusters in a Dataset: An Information-Theoretic Approach [My Copy] Journal of the American Statistical Association, Vol. 98, No. 463. (2003), pp. 750-763. by Catherine A. Sugar, Gareth M. James posted by 2 people awarlau saket
	Modularity-maximizing graph communities via mathematical programming [My Copy] The European Physical Journal B - Condensed Matter and Complex Systems by G. Agarwal, D. Kempe posted by 1 person saket
	Towards a statistical theory of clustering [My Copy] In In PASCAL workshop on Statistics and Optimization of Clustering (2005) by Ulrike Von Luxburg, Shai Ben-David posted by 1 person saket
	Natural selection governs local, but not global, evolutionary gene coexpression networks in Caenorhabditis elegans [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008), 96. by I. King Jordan, Lee Katz, Dee Denver, J. Todd Streelman posted by 2 people lskatz saket
	Clustering with Qualitative Information [My Copy] In FOCS '03: Proceedings of the 44th Annual IEEE Symposium on Foundations of Computer Science (2003), 524. by Moses Charikar, Venkatesan Guruswami, Anthony Wirth posted by 1 person saket
	Using diversity in cluster ensembles [My Copy] Systems, Man and Cybernetics, 2004 IEEE International Conference on In Systems, Man and Cybernetics, 2004 IEEE International Conference on, Vol. 2 (2004), pp. 1214-1219 vol.2. by L. I. Kuncheva, S. T. Hadjitodorov posted by 1 person saket
	A Extraction Method of Overlapping Cluster Based on Network Structure Analysis [My Copy] In WI-IATW '07: Proceedings of the 2007 IEEE/WIC/ACM International Conferences on Web Intelligence and Intelligent Agent Technology - Workshops (2007), pp. 212-216. by Makoto Takaki, Keiichi Tamura, Yasuma Mori, Hajime Kitakami posted by 1 person saket
	Clustering confidence sets [My Copy] Journal of Statistical Planning and Inference, Vol. 139, No. 2. (01 February 2009), pp. 109-124. by N. Serban posted by 1 person saket
	A roadmap of clustering algorithms: finding a match for a biomedical application. [My Copy] Briefings in bioinformatics (24 February 2009) by Bill Andreopoulos, Aijun An, Xiaogang Wang, Michael Schroeder posted by 1 person saket
	Summarizing Multiple Gene Trees Using Cluster Networks [My Copy] In WABI '08: Proceedings of the 8th international workshop on Algorithms in Bioinformatics (2008), pp. 296-305. by Daniel H. Huson, Regula Rupp posted by 1 person saket
	Mining Alzheimer disease relevant proteins from integrated protein interactome data. [My Copy] Pac Symp Biocomput (2006), pp. 367-378. by J. Y. Chen, C. Shen, A. Y. Sivachenko posted by 2 people saket eukfn
	Many Random Walks Are Faster Than One [My Copy] (20 Nov 2007) by Noga Alon, Chen Avin, Michal Koucky, Gady Kozma, Zvi Lotker, Mark R. Tuttle posted by 1 person saket
	Reverse engineering the evolution of protein interaction networks. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2009), pp. 190-202. by Todd A. Gibson, Debra S. Goldberg posted by 1 person saket
	Estimating the size of the human interactome [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 19. (13 May 2008), pp. 6959-6964. by Michael P. H. Stumpf, Thomas Thorne, Eric de Silva, et al.Ronald Stewart, Hyeong J. An, Michael Lappe, Carsten Wiuf posted by 25 people aelef thegoose2 bicko C. elegans / WormBase tharris zwang chrissp100 sanchezbuelna guhjy phoenixzxl tmmurali neils paolomarcatili mjoach xingxu Ema cabbagesofdoom balicea marck friendpine brianb roys Evangelia dragonrez bpcusack
	Probabilistic Paths for Protein Complex Inference [My Copy] Systems Biology and Computational Proteomics (2007), pp. 14-28. by Hailiang Huang, Lan Zhang, Frederick Roth, Joel Bader posted by 1 person mpotamias
	Connecting Seed Lists of Mammalian Proteins Using Steiner Trees [My Copy] Signals, Systems and Computers, 2007. ACSSC 2007. Conference Record of the Forty-First Asilomar Conference on In Signals, Systems and Computers, 2007. ACSSC 2007. Conference Record of the Forty-First Asilomar Conference on (2007), pp. 155-159. by A. G. White, A. Ma'ayan
	Direct Site-Selective Covalent Protein Immobilization Catalyzed by a Phosphopantetheinyl Transferase [My Copy] J. Am. Chem. Soc. (23 August 2008) by Lu S. Wong, Jenny Thirlway, Jason Micklefield
	A “Seed-Refine” Algorithm for Detecting Protein Complexes From Protein Interaction Data [My Copy] NanoBioscience, IEEE Transactions on In NanoBioscience, IEEE Transactions on, Vol. 6, No. 1. (2007), pp. 43-50. by Pengjun Pei, Aidong Zhang
	Towards Detecting Protein Complexes from Protein Interaction Data [My Copy] Computational Science – ICCS 2006 (2006), pp. 734-741. by Pengjun Pei, Aidong Zhang
	A Graph-Theoretic Method for Mining Overlapping Functional Modules in Protein Interaction Networks [My Copy] Bioinformatics Research and Applications (2008), pp. 208-219. by Min Li, Jianxin Wang, Jianer Chen
	Probabilistic model of the human protein-protein interaction network [My Copy] Nature Biotechnology, Vol. 23, No. 8., pp. 951-959. by Daniel R. Rhodes, Scott A. Tomlins, Sooryanarayana Varambally, et al.Vasudeva Mahavisno, Terrence Barrette, Shanker Kalyana-Sundaram, Debashis Ghosh, Akhilesh Pandey, Arul M. Chinnaiyan posted by 21 people snow_dragon Borelli tonamswish ilyashl aelef cswinburne kentsis lfriedl balajis opheliav wnpx nickluscombe eukfn iris_2001 antonkratz kdl EBI-regulation mingzhi maralena phoenixzxl penpen926
	A systems biology approach for pathway level analysis [My Copy] Genome Research, Vol. 17, No. 10. (4 October 2007), pp. 1537-1545. by Sorin Draghici, Purvesh Khatri, Adi L. Tarca, et al.Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero posted by 25 people zufar bertelsen tonamswish gbloeb cgaugain ptrobajo pengchy tmmurali dragonrez jfr gurkanbebek grahamc shigepong zwang cabbagezs cerami xingxu Bioinformatics shikin idonaldson Pao-Yang OPIG thomaskelder heliopais AlexanderPico
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted by 75 people saunders rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser jbhiatt yylin mgomes BioNica idoerg pjcite swp09 kgutwin mcbla cpwardell References for 3DSim paper johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 EisenLab biomedical-nlp Microbial-Ecology Plantandetc mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM