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	Protein Dynamism and Evolvability [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 203-207. by Nobuhiko Tokuriki, Dan S. Tawfik posted by 26 people skywalkerus02 paulymer dfdong tomhebbron anuragsethi ahmetbakan kevinchannon klexa lauresultan dbikard ibuch ramiro2k structural_bioinformatics McCammon barry pablocarb ramanuja baker-group sobolevnrm biomcgary hsekiguc VGreiff phoenixzxl zwang jdoconnell paulschlesinger
	Accelerating molecular dynamic simulation on graphics processing units [My Copy] Journal of Computational Chemistry, Vol. 30, No. 6. (2009), pp. 864-872. by Mark S. Friedrichs, Peter Eastman, Vishal Vaidyanathan, et al.Mike Houston, Scott Legrand, Adam L. Beberg, Daniel L. Ensign, Christopher M. Bruns, Vijay S. Pande posted by 15 people oteri anuragsethi kevinchannon flbarroso r2s2 iantunbridge ihaque baker-group sobolevnrm ruvido massivemayhem structural_bioinformatics McCammon barry RamuAnandakrishnan
	Similarity Measures for Protein Ensembles [My Copy] PLoS ONE, Vol. 4, No. 1. (15 January 2009), e4203. by Kresten Lindorff-Larsen, Jesper Ferkinghoff-Borg posted by 13 people skywalkerus02 anuragsethi klexa apaydin baker-group sobolevnrm gane5h structural_bioinformatics barry McCammon jmccammon reyez biehl
	Theory of Free Energy and Entropy in Noncovalent Binding [My Copy] Chemical Reviews, Vol. 109, No. 9. (9 September 2009), pp. 4092-4107. by Huan-Xiang Zhou, Michael K. Gilson posted by 10 people McCammon jmccammon Chang group cchang agrossfield anuragsethi sobolevnrm dr_proton qshao paulschlesinger
	Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000204. by Duncan Hull, Steve R. Pettifer, Douglas B. Kell posted by 233 people jrifon sobolevnrm bsamal anitastreicher hmx danilov iskanbasal cgl colombet Parenting 2.0 hughesro gbouma welliegirl Dentistry suribe mordiano operon Horduna cyrille IgorP sachingarg claudiushauptmann ianturton tech4trainers radagabriel mfenner Zotero en español jalonsoarevalo StemCellWorkstation martica840527 agbiotec LinaMelo claudine acabezas aaltenburger sarelfa Anita13 Dannycoutinho tmar lucybuykx ltitodem dcombe christianholz schoeband dgovoni maren antonkratz mzkbnt girabbit mawds tlb56 sstose klexa n00c slr52 Journal picks jandot applebyb timhubbard yangjustinc CameronNeylon heliopais sarabatts aldra Prlwrlczkwsky CPAP amyfyn vellino ulrichs malkav30 cristiangutierrez rockrescue victorantoniomtz Tita NancyAbigail Nembrod jclau clarabermudez tanyacovi6 Health_Informatics jmohan polivares artaban421 nperoni eudominguezmartin nhoussos MARCOUNAM carelcad euanlawson furlong stevepettifer flipip23 virolog ZoeThomas pawelsobko tnhh kbkbk8 rickl nellapower mcentyre wujastyk beanformer msanchof2009 Herramientas20 dmaweb bhengeveld jpgrolle wsumthai daforerog Semantic-Social-Networks INK-SSCI-SCI@CiteuLike.org INK-SSCI-SCI quianominorleo tux2000 cogs eLearning in Leicester AJCann robsyme anthrogeek lmichan sainsworth hkimura western4uk cybob10 kevinemamy akriesch williamgunn mgh-lcs carlblesius NaCTeM Effie alhoori mikel_egana tilanka coldmeadow yas Tomste mseyfang fitzgeraldp2 fungal eduardod5 DavidG67 chenlc03 stempvoort lesikv jmueller17 sirexkat Koh akraemer thegoose kharke niallhaslam rdmagnuson JuanGiarrizzo pkonings jennialp lgibson rmasur GJNauta puchu rrbarb amarois mneeley MEHTRadiology dr_lee_xray IRTADOC zilvlan curthh mount_misery narroyo rdiaz treangen hpaces bumatic BerndBerndsen Département Hypermédia - Master NET esterhasz phreeza dbk rempeljl teachingaging cs02 joseph_x_zhou continea Rosetta fletchad Betelgeuse60 tomroper 1971biblio timrwatkins rschulz JLab BergmanLab cisevol ryan smithrise silberbauer natstreet pick600 xjlibod ukppdadsr robertlischke bookwormzz NIlz junwang4 taguchi tag McCammon barry kristgy caseybrown Gaetan bcondon lynnefox marekrud nuin sdgsilvana ckai1 guhjy neils norris Poverty Alleviation from Access to Knowledge jago druvus emayorga GeeSharpMinor fgibson structural_bioinformatics chad_davis Roswell Cancer Crosstalk Zephyrus leonardo dullhunk
	Cloud computing [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), 1475. by Alex Bateman, Matt Wood posted by 29 people agomez jfr rdiaz fgibson walshtp Jingbo aan pekrau tnhh niallhaslam bertelsen apaydin structural_bioinformatics McCammon barry kiekyon reyez baker-group sobolevnrm cymacs druvus acesforum thegoose mikel_egana dullhunk Bioinformatics dswan jmeppley bmajoros
	Biopython: freely available Python tools for computational molecular biology and bioinformatics [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1422-1423. by Peter J. A. Cock, Tiago Antao, Jeffrey T. Chang, et al.Brad A. Chapman, Cymon J. Cox, Andrew Dalke, Iddo Friedberg, Thomas Hamelryck, Frank Kauff, Bartek Wilczynski, Michiel J. L. de Hoon posted by 49 people akou eesruiz Geknitics pekrau Systems_Biology Computational_Systems_Biology Sergey_gerbek hwright jfr karinaecomp applebyb klexa rdiaz FabienneGranier thegoose Structural Biology Group TorVergata oteri cmzmasek jwm guhjy Journal picks AlexBateman daforerog ltitodem Thaverkamp baker-group sobolevnrm psique Bioinformatics dswan neils dullhunk bertelsen Vincent_Rouilly gwallau brianb jorisslob svenrahmann jmeppley VGreiff sjcockell druvus Software-Architecture OER_Open_Educational_Resources Method_Engineering_Services jago kshameer operon svozil
	Mapping the conformational transition in Src activation by cumulating the information from multiple molecular dynamics trajectories [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 10. (10 March 2009), pp. 3776-3781. by Sichun Yang, Nilesh K. Banavali, BenoÃ®t Roux posted by 10 people anuragsethi Diego_Prada bmduggan allmensch guhjy baker-group sobolevnrm barry McCammon jmccammon
	Hydration Water Dynamics Near Biological Interfaces† [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 13. (2 April 2009), pp. 4082-4092. by Margaret E. Johnson, Cecile Malardier-Jugroot, Rajesh K. Murarka, Teresa Head-Gordon posted by 8 people Jiang Research Group whitead willard flbarroso Lombardo_7 kvilonen baker-group sobolevnrm
	Long-timescale molecular dynamics simulations of protein structure and function. [My Copy] Current opinion in structural biology, Vol. 19, No. 2. (08 April 2009), pp. 120-127. by John L. Klepeis, Kresten Lindorff-Larsen, Ron O. Dror, David E. Shaw posted by 14 people loison xdeupi agrossfield allmensch bmduggan r2s2 apaydin kiekyon Borelli idoerg baker-group sobolevnrm edws paulschlesinger
	Nothing about protein structure classification makes sense except in the light of evolution [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (24 June 2009), pp. 329-334. by Ruben E. Valas, Song Yang, Philip E. Bourne posted by 17 people dfdong mkotlyar skywalkerus02 dgront nyyu robfsouza apaydin structural_bioinformatics barry coela R.E.A.D Zephyrus baker-group sobolevnrm zwang friendpine paulschlesinger
	Predictions of Hydration Free Energies from All-Atom Molecular Dynamics Simulations† [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by David L. Mobley, Christopher I. Bayly, Matthew D. Cooper, Ken A. Dill posted by 6 people ucbcjbm willard baker-group sobolevnrm Jiang Research Group whitead
	Accurate Prediction of Peptide Binding Sites on Protein Surfaces [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (27 March 2009), e1000335. by Evangelia Petsalaki, Alexander Stark, Eduardo García-Urdiales, Robert B. Russell posted by 10 people dfdong higueruelo pablocarb nickolay phoenixzxl neils idoerg baker-group sobolevnrm paulschlesinger
	Efficient Drug Lead Discovery and Optimization [My Copy] Accounts of Chemical Research, Vol. 0, No. 0. (0000) by William L. Jorgensen posted by 9 people nanonan tbinbal Thermaneutist McCammon jmccammon superpyrin sschurer baker-group sobolevnrm
	Biophysical dissection of membrane proteins [My Copy] Nature, Vol. 459, No. 7245. (20 May 2009), pp. 344-346. by Stephen H. White posted by 13 people amoszlj rph girayenkavi ColumbusLabs viktor21614 kevinchannon hsekiguc structural_bioinformatics McCammon barry baker-group sobolevnrm paulschlesinger
	Ion channel gates: comparative analysis of energy barriers [My Copy] European Biophysics Journal by Kaihsu Tai, Shozeb Haider, Alessandro Grottesi, Mark Sansom posted by 5 people McCammon jmccammon baker-group sobolevnrm paulschlesinger
	Four stages of a scientific discipline; four types of scientist [My Copy] Trends in Biochemical Sciences, Vol. 34, No. 5. (09 May 2009), pp. 217-223. by Alexander M. Shneider posted by 41 people freesci artaban421 benoitvalley reflist singhsh Sergey_gerbek cyounkin memerman Horduna Gorzomagnificent sfalsharif plosmedicine daforerog Roswell Cancer Crosstalk yyfwuhan CulCog yangjustinc abhishek_tiwari operon brembs ommachi Ryerson U. MMSc marclijour druvus qwermish Centre de Recherches Interdisciplinaires Enro polivares coela BergmanLab cisevol baker-group sobolevnrm McCammon barry reyez silberbauer Zephyrus dullhunk fgibson neils
	Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms. [My Copy] Molecular bioSystems, Vol. 5, No. 3. (March 2009), pp. 207-216. by C. J. Tsai, A. Del Sol, R. Nussinov posted by 8 people anuragsethi flbarroso structural_bioinformatics McCammon barry baker-group sobolevnrm higueruelo
	The Protein Data Bank [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242. by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne posted by 53 people loison ubcg08l trishul krapnik barmak7282 viktor21614 badi ucbcjbm TLVincent maria_hauser Martin8223 tomjad Diego_Prada flbarroso Taguan oceanwind dsmueller fisherp semin MarcoAlvarez kumar_physics References for 3DSim paper LamBras RamuAnandakrishnan nlapalu reyez nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon aengisch debatebob massivemayhem gisle girschick selrac Radiation_Damage Stressosome biomedical-nlp beta tji higueruelo boris_aguilar sebk timg
	Electronic continuum model for molecular dynamics simulations [My Copy] The Journal of Chemical Physics, Vol. 130, No. 8. (2009), 085102. by I. V. Leontyev, A. A. Stuchebrukhov posted by 5 people sobolevnrm baker-group Jiang Research Group whitead dlimmer
	A Quick Guide to Organizing Computational Biology Projects [My Copy] PLoS Comput Biol In PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000424. by William S. Noble posted by 80 people chvlyl freesci kevinemamy dfdong dutilh leliavski dgront paulymer FAB-lab rvosa installe burak annakcroft brianb nuin skembel pekrau Sergey_gerbek mordiano remoteFuture Yanno Pedro Martinez EvoDevo lab Barcelona aaltenburger marekrud guhjy dolchan frohike operon Orengo Group Journal Picks CorinYeats artaban421 antonkratz tomhebbron maren bayesian daveGerrard JoeBanks jcaddy somak bertelsen ptrobajo nperoni daforerog mmwoodman charris5 GustavoLacerda pmendes fgibson rdiaz Zephyrus heliopais franklu310 lmichan silberbauer leemond31 jlangdon robfsouza Bioinformatics - CRUK Stew pmung reyez kshameer djkt pawelsobko jjray dswan apaydin renatomilani VGreiff cabbagesofdoom ccsbs wei_tang fenghezi BergmanLab cisevol structural_bioinformatics McCammon barry sdaehne druvus
	Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins [My Copy] PLoS Comput Biol, Vol. 5, No. 2. (20 February 2009), e1000293. by Michael D. Daily, Jeffrey J. Gray posted by 13 people anuragsethi skywalkerus02 baker-group sobolevnrm pablocarb AngelB eallain allmensch gane5h apaydin structural_bioinformatics McCammon barry
	Protein Ionizable Groups: pK Values and Their Contribution to Protein Stability and Solubility [My Copy] Journal of Biological Chemistry, Vol. 284, No. 20. (15 May 2009), pp. 13285-13289. by C. Nick Pace, Gerald R. Grimsley, J. Martin Scholtz posted by 10 people pjkiley scampos klexa nanonan structural_bioinformatics McCammon barry baker-group sobolevnrm paulschlesinger
	Thermodynamically dominant hydration structures of aqueous ions [My Copy] The Journal of Chemical Physics, Vol. 130, No. 19. (2009), 195102. by Safir Merchant, D. Asthagiri posted by 7 people afenley mikaellund flbarroso dlimmer agrossfield baker-group sobolevnrm
	Systematic multiscale simulation of membrane protein systems [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 2. (09 April 2009), pp. 138-144. by Gary Ayton,, Gregory Voth, posted by 6 people loison baker-group sobolevnrm McCammon barry paulschlesinger
	Surface Sites for Engineering Allosteric Control in Proteins [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 438-442. by Jeeyeon Lee, Madhusudan Natarajan, Vishal C. Nashine, et al.Michael Socolich, Tina Vo, William P. Russ, Stephen J. Benkovic, Rama Ranganathan posted by 12 people baker-group sobolevnrm jbhiatt lflorez cactus marck i000 structural_bioinformatics McCammon Bioinformatics barry paulschlesinger
	Chapter 9 Analyzing Enzymatic pH Activity Profiles and Protein Titration Curves Using Structure-Based pKa Calculations and Titration Curve Fitting [My Copy] Methods in enzymology In Computer Methods, Part A, Vol. 454 (2009), pp. 233-258. by Jens E. Nielsen posted by 7 people sobolevnrm scampos anuragsethi McCammon jmccammon flbarroso baker-group
	Establishing a successful bioinformatics core facility team. [My Copy] PLoS computational biology In PLoS Comput Biol, Vol. 5, No. 6. (26 June 2009), e1000368. by Fran Lewitter, Michael Rebhan posted by 31 people guhjy Bioinformatics Core Service jforment jfr pekrau GustavoLacerda fgibson daforerog zwang natstreet sobolevnrm orzenil kongl Convention on Knowledge Commons jago druvus kiekyon nuin operon aprasad chrisamiller dswan reyez djkt GeeSharpMinor structural_bioinformatics McCammon Bioinformatics barry Journal picks ppgardne
	Support Vector Machines and Kernels for Computational Biology [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000173. by Asa Ben-Hur, Cheng S. Ong, Sören Sonnenburg, Bernhard Schölkopf, Gunnar Rätsch posted by 36 people guhjy VGreiff tomhebbron ucbcjbm thegoose Zephyrus phoenixzxl winterschlaefer kshameer Bioinformatics svozil mmartin jfr MarcoAlvarez baker-group sobolevnrm Yanno Scis0000002 srp33 GustavoLacerda nuin rdiaz dakelley rschulz Borelli taguchi VisionLab kristina bayesian chad_davis mdstobbe tny giovenko markchen druvus GeeSharpMinor
	Information flow analysis of interactome networks. [My Copy] PLoS computational biology, Vol. 5, No. 4. (10 April 2009), e1000350. by Patrycja Vasilyev V. Missiuro, Kesheng Liu, Lihua Zou, et al.Brian C. Ross, Guoyan Zhao, Jun S. Liu, Hui Ge posted by 21 people lptolik jfr freesci flbarroso peteruetz phoenixzxl robfsouza reyez VGreiff colmryan baker-group sobolevnrm hryk shikin dswan fgibson coela ddahlem mstumpf zwang friendpine
	Effective force coarse-graining [My Copy] Phys. Chem. Chem. Phys. In Phys. Chem. Chem. Phys., Vol. 11, No. 12. (2009), pp. 2002-2015. by Yanting Wang, W. G. Noid, Pu Liu, Gregory A. Voth posted by 7 people loison baker-group sobolevnrm McCammon jmccammon mbeeby flbarroso
	Ten thousand interactions for the molecular biologist [My Copy] Nature Biotechnology, Vol. 22, No. 10. (06 October 2004), pp. 1317-1321. by Patrick Aloy, Robert B. Russell posted by 17 people krapnik ucbcjbm flbarroso mikaellund baaden jwm bicko chad_davis dullhunk dgront drastic ruvido Radiation_Damage Stressosome Evangelia higueruelo timg
	On the Range of Water Structure Models Compatible with X-ray and Neutron Diffraction Data [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 18. (7 May 2009), pp. 6246-6255. by Kjartan T. Wikfeldt, Mikael Leetmaa, Mathias P. Ljungberg, Anders Nilsson, Lars G. M. Pettersson posted by 5 people qshao willard flbarroso baker-group sobolevnrm
	Dynamics of protein-protein encounter: A Langevin equation approach with reaction patches [My Copy] The Journal of Chemical Physics, Vol. 129, No. 15. (2008) by Jakob Schluttig, Denitsa Alamanova, Volkhard Helms, Ulrich S. Schwarz posted by 6 people anuragsethi barry baker-group sobolevnrm McCammon jmccammon
	Biophysical characterization of intrinsically disordered proteins. [My Copy] Current opinion in structural biology, Vol. 19, No. 1. (21 February 2009), pp. 23-30. by D. Eliezer posted by 7 people sobolevnrm girayenkavi flbarroso laurenm baker-group paulschlesinger viktor21614
	Computational evaluation of protein-small molecule binding. [My Copy] Current opinion in structural biology, Vol. 19, No. 1. (20 February 2009), pp. 56-61. by O. Guvench, A. D. MacKerell posted by 8 people sobolevnrm flbarroso csrocha ucbcjbm baker-group phoenixzxl McCammon barry
	Effect of cholesterol on the structure of a phospholipid bilayer [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 10. (10 March 2009), pp. 3654-3658. by FrÃ©dÃ©rick de Meyer, Berend Smit posted by 7 people softsimu kevinchannon baker-group sobolevnrm paulschlesinger chiufanlee cjryan
	A unified model of protein dynamics [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 13. (31 March 2009), pp. 5129-5134. by Hans Frauenfelder, Guo Chen, Joel Berendzen, et al.Paul W. Fenimore, HelÃ©n Jansson, Benjamin H. McMahon, Izabela R. Stroe, Jan Swenson, Robert D. Young posted by 10 people paulymer Diego_Prada Christophe abovell jdstevenson amishp baker-group sobolevnrm zwang kevinchannon
	Rational stabilization of enzymes by computational redesign of surface charge-charge interactions. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (5 February 2009) by Alexey V V. Gribenko, Mayank M M. Patel, Jiajing Liu, Scott A A. McCallum, Chunyu Wang, George I I. Makhatadze posted by 7 people baker-group sobolevnrm grahamc amishp structural_bioinformatics McCammon barry
	Do viral proteins possess unique biophysical features? [My Copy] Trends in biochemical sciences (3 December 2008) by Nobuhiko Tokuriki, Christopher J J. Oldfield, Vladimir N N. Uversky, Igor N N. Berezovsky, Dan S S. Tawfik posted by 5 people baker-group sobolevnrm higueruelo McCammon barry
	Correlated Evolution of Interacting Proteins: Looking Behind the Mirrortree [My Copy] Journal of Molecular Biology, Vol. 385, No. 1. (09 January 2009), pp. 91-98. by M. Kann, B. Shoemaker, A. Panchenko, T. Przytycka posted by 14 people mgomes biomcgary chica druvus baker-group sobolevnrm mhofree grahamc Bioinformatics barry zwang marti reyez paulschlesinger
	Dynamic personalities of proteins [My Copy] Nature, Vol. 450, No. 7172. (12 December 2007), pp. 964-972. by Katherine Henzler-Wildman, Dorothee Kern posted by 21 people victorclaessen saravan Diego_Prada xdeupi viktor21614 ruvido barry pavanghatty chad_davis allmensch choonpeng rsantana cjeans sobolevnrm baker-group wilbur mijam kjell phoenixzxl higueruelo GeeSharpMinor
	Allosteric Transitions of Supramolecular Systems Explored by Network Models: Application to Chaperonin GroEL [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (17 April 2009), e1000360. by Zheng Yang, Peter Májek, Ivet Bahar posted by 5 people barry McCammon jmccammon baker-group sobolevnrm
	Bayesian comparison of Markov models of molecular dynamics with detailed balance constraint [My Copy] The Journal of Chemical Physics, Vol. 131, No. 4. (2009), 045106. by Sergio Bacallado, John D. Chodera, Vijay Pande posted by 5 people anuragsethi sobolevnrm Jiang Research Group whitead dlimmer
	Striking Effects of Hydrodynamic Interactions on the Simulated Diffusion and Folding of Proteins [My Copy] Journal of Chemical Theory and Computation, Vol. 5, No. 2. (10 February 2009), pp. 242-256. by Tamara Frembgen-Kesner, Adrian H. Elcock posted by 5 people baker-group sobolevnrm barry McCammon jmccammon
	Inclusion of ionization states of ligands in affinity calculations [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 1. (2009), pp. 138-150. by Serena Donnini, Alessandra Villa, Gerrit Groenhof, Alan E. Mark, Rik K. Wierenga, André H. Juffer posted by 8 people flbarroso onufriev McCammon rbaron ibuch baker-group sobolevnrm RamuAnandakrishnan
	Electrostatic effects on funneled landscapes and structural diversity in denatured protein ensembles [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 6. (10 February 2009), pp. 1796-1801. by Patrick Weinkam, Ekaterina V. Pletneva, Harry B. Gray, Jay R. Winkler, Peter G. Wolynes posted by 4 people apaydin baker-group sobolevnrm sammmtha
	Ten Simple Rules for Choosing between Industry and Academia [My Copy] PLoS Computational Biology, Vol. 5, No. 6. (26 June 2009), e1000388. by David B. Searls posted by 43 people tux2000 leliavski jfr welliegirl Sergey_gerbek cyounkin Tomste Horduna aaltenburger Zephyrus CulCog thegoose Yanno timflutre tnhh PeteField MarcoAlvarez sobolevnrm Bioinformatics - CRUK Stew dbikard jasontsai casutton franklu310 kieran101 chrisamiller rdiaz daveGerrard reyez neils marekrud Borelli psique kshameer gjuggler sdaehne flips Journal picks ppgardne fgibson McCammon barry dullhunk
	Structural systems biology: modelling protein interactions. [My Copy] Nature reviews. Molecular cell biology, Vol. 7, No. 3. (March 2006), pp. 188-197. by Patrick Aloy, Robert B. Russell posted by 29 people krapnik flbarroso timg chica Scis0000002 ubcg08l ana aalibes bicko xico dgront drastic choonpeng henschel ruvido massivemayhem cat_worth fishtank iris_2001 gvuister lpfernandes structural_bioinformatics Bioinformatics WetBiology Evangelia andreas_foersch higueruelo chad_davis jteyra
	Ten Simple Rules To Combine Teaching and Research [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (24 April 2009), e1000358. by Quentin Vicens, Philip E. Bourne posted by 32 people danilov Zephyrus Sergey_gerbek jfr rdiaz CulCog mevadg nanonan angelicabtto daforerog Tips on research dipenps guano NIlz coela apaydin jago abellogin yangjustinc silberbauer marekrud lambert72 edws allysonlister dswan dullhunk McCammon barry ulrichs mariopinedakrch baker-group sobolevnrm
	Trapping Moving Targets with Small Molecules [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 213-215. by Gregory M. Lee, Charles S. Craik posted by 10 people guhjy nanonan baker-group sobolevnrm structural_bioinformatics McCammon barry pablocarb Fortran friendpine
	PocketMatch: A new algorithm to compare binding sites in protein structures [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 543. by Kalidas Yeturu, Nagasuma Chandra posted by 11 people cdsouthan nanonan pauldobson baker-group sobolevnrm jteyra kshameer reyez tny higueruelo druvus
	Solubility and Molecular Conformations of n-Alkane Chains in Water [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 18. (7 May 2009), pp. 6405-6414. by Andrew L. Ferguson, Pablo G. Debenedetti, Athanassios Z. Panagiotopoulos posted by 4 people willard flbarroso baker-group sobolevnrm
	What are the Sites Water Occupies at the Interface of a Phospholipid Membrane?† [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 13. (2 April 2009), pp. 4119-4124. by Victor V. Volkov, Yuji Takaoka, Roberto Righini posted by 4 people sobolevnrm flbarroso willard baker-group
	Linking folding and binding [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 1. (February 2009), pp. 31-38. by Peter E. Wright, H. Jane Dyson posted by 5 people chemrahul82 sobolevnrm higueruelo flbarroso baker-group
	From Franklin to Today: Toward a Molecular Level Understanding of Bonding and Adsorption at the Oil−Water Interface† [My Copy] The Journal of Physical Chemistry C, Vol. 113, No. 4. (29 January 2009), pp. 1171-1188. by Cathryn L. Mcfearin, Daniel K. Beaman, Fred G. Moore, Geraldine L. Richmond posted by 4 people flbarroso baker-group sobolevnrm willard
	Origin of the change in solvation enthalpy of the peptide group when neighboring peptide groups are added [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 9. (3 March 2009), pp. 3137-3141. by Franc Avbelj, Robert L. Baldwin posted by 4 people baker-group sobolevnrm paulschlesinger amishp
	Dynamical networks in tRNA:protein complexes [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6620-6625. by Anurag Sethi, John Eargle, Alexis A. Black, Zaida Luthey-Schulten posted by 7 people anuragsethi jeargle AbnerCYH McCammon jmccammon baker-group sobolevnrm
	Automated Event Detection and Activity Monitoring in Long Molecular Dynamics Simulations [My Copy] Journal of Chemical Theory and Computation, Vol. 5, No. 10. (13 October 2009), pp. 2595-2605. by Willy Wriggers, Kate A. Stafford, Yibing Shan, et al.Stefano Piana, Paul Maragakis, Kresten Lindorff-Larsen, Patrick J. Miller, Justin Gullingsrud, Charles A. Rendleman, Michael P. Eastwood, Ron O. Dror, David E. Shaw posted by 5 people anuragsethi sobolevnrm McCammon jmccammon pmung
	Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners [My Copy] PLoS Comput Biol, Vol. 3, No. 4. (27 April 2007), e43. by Benjamin A. Shoemaker, Anna R. Panchenko posted by 26 people aceol colmryan timg cerca jperkins chica kiekyon kshameer zdai Robinder giovenko Yanno guhjy aalibes bicko jfr chad_davis cjeans iris_2001 zwang lpfernandes groepl carlk Evangelia higueruelo phoenixzxl
	Solvent dramatically affects protein structure refinement [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 51. (23 December 2008), pp. 20239-20244. by Gaurav Chopra, Christopher M. Summa, Michael Levitt posted by 12 people rabio pavanghatty mijam dgront structural_bioinformatics McCammon Bioinformatics barry baker-group sobolevnrm biehl itmeson
	Computational Methods for Predicting Sites of Functionally Important Dynamics [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Adam D. Schuyler, Heather A. Carlson, Eva L. Feldman posted by 7 people skywalkerus02 agrossfield ubcg08l higueruelo barry baker-group sobolevnrm
	Gaussian-Mixture Umbrella Sampling [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Paul Maragakis, Arjan van der Vaart, Martin Karplus posted by 4 people willard agrossfield baker-group sobolevnrm
	ABSINTH: a new continuum solvation model for simulations of polypeptides in aqueous solutions. [My Copy] Journal of computational chemistry, Vol. 30, No. 5. (15 April 2009), pp. 673-699. by A. Vitalis, R. V. Pappu posted by 4 people melo_mcr baker-group sobolevnrm agrossfield
	Bad Seeds Sprout Perilous Dynamics: Stochastic Thermostat Induced Trajectory Synchronization in Biomolecules [My Copy] Journal of Chemical Theory and Computation, Vol. 5, No. 6. (9 June 2009), pp. 1624-1631. by Daniel J. Sindhikara, Seonah Kim, Arthur F. Voter, Adrian E. Roitberg posted by 5 people McCammon jmccammon edws baker-group sobolevnrm
	Human genomes as email attachments [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 274-275. by Scott Christley, Yiming Lu, Chen Li, Xiaohui Xie posted by 30 people daforerog hzoltan idonaldson kshameer operon guhjy druvus n00c dnewburger djkt mmartin baker-group sobolevnrm jfr psique BergmanLab cisevol GeeSharpMinor neils Bioinformatics dswan dullhunk siebert hpiwowar nuin cthachuk rschulz treangen renatomilani jmeppley
	Principles of docking: An overview of search algorithms and a guide to scoring functions. [My Copy] Proteins, Vol. 47, No. 4. (1 June 2002), pp. 409-443. by Inbal Halperin, Buyong Ma, Haim Wolfson, Ruth Nussinov posted by 30 people rabio ucbcjbm flbarroso csrocha Structural Biology Group TorVergata oteri timg dgruiz cantupaz apaydin bicko chad_davis yongzhao ttjoseph nickolay ima sangeetha dgront blackbart gane5h mmuecke kazemi bpagano massivemayhem cjeans Bioinformatics TSRI_MGL insilicodrug Evangelia nigham
	Protein Sliding along DNA: Dynamics and Structural Characterization [My Copy] Journal of Molecular Biology, Vol. 385, No. 4. (30 January 2009), pp. 1087-1097. by O. Givaty, Y. Levy posted by 4 people barry baker-group sobolevnrm reyez
	Computation of conformational coupling in allosteric proteins. [My Copy] PLoS computational biology, Vol. 5, No. 8. (28 August 2009), e1000484. by Brian A. Kidd, David Baker, Wendy E. Thomas posted by 10 people apaydin skywalkerus02 sobolevnrm klexa oteri boris_aguilar bmduggan McCammon barry zwang
	Internal coarse-graining of molecular systems [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6453-6458. by Jérôme Feret, Vincent Danos, Jean Krivine, Russ Harmer, Walter Fontana posted by 11 people jvb leemond31 superpyrin Scis0000002 reyez trfield baker-group sobolevnrm paulschlesinger jjray kshundyak
	Multiscale characterization of protein conformational ensembles [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 4. (2009), pp. 837-851. by Amarda Shehu, Lydia E. Kavraki, Cecilia Clementi posted by 8 people anuragsethi okapi structural_bioinformatics McCammon barry baker-group sobolevnrm apaydin
	Predicting Protein Function and Binding Profile via Matching of Local Evolutionary and Geometric Surface Patterns [My Copy] Journal of Molecular Biology, Vol. 387, No. 2. (27 March 2009), pp. 451-464. by Yan Y. Tseng, Joseph Dundas, Jie Liang posted by 8 people sobolevnrm pablocarb nickolay structural_bioinformatics McCammon Bioinformatics barry baker-group
	Aminoglycoside Association Pathways with the 30S Ribosomal Subunit [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Maciej Długosz, Joanna Trylska posted by 4 people McCammon jmccammon baker-group sobolevnrm
	CHARMM: The biomolecular simulation program [My Copy] Journal of Computational Chemistry, Vol. 30, No. 10. (30 July 2009), pp. 1545-1614. by B. .. Brooks,, C. .. Brooks,, A. .. Mackerell,, et al.L. Nilsson,, R. .. Petrella,, B. Roux,, Y. Won,, G. Archontis,, C. Bartels,, S. Boresch,, A. Caflisch,, L. Caves,, Q. Cui,, A. .. Dinner,, M. Feig,, S. Fischer,, J. Gao,, M. Hodoscek,, W. Im,, K. Kuczera,, T. Lazaridis,, J. Ma,, V. Ovchinnikov,, E. Paci,, R. .. Pastor,, C. .. Post,, J. .. Pu,, M. Schaefer,, B. Tidor,, R. .. Venable,, H. .. Woodcock,, X. Wu,, W. Yang,, D. .. York,, M. Karplus, posted by 12 people ckmyo dgront rodrigofaccioli mmuecke medic0747 flbarroso jrperillaj xavierprat saravan baker-group sobolevnrm dimka
	Achieving energy conservation in Poisson–Boltzmann molecular dynamics: Accuracy and precision with finite-difference algorithms [My Copy] Chemical Physics Letters, Vol. 468, No. 4-6. (22 January 2009), pp. 112-118. by J. Wang, Q. Cai, Z. Li, H. Zhao, R. Luo posted by 4 people baker-group sobolevnrm McCammon jmccammon
	HOLLOW: Generating Accurate Representations of Channel and Interior Surfaces in Molecular Structures [My Copy] BMC Structural Biology, Vol. 8 (14 November 2008), 49. by Bosco K. Ho, Franz Gruswitz2 posted by 4 people baker-group sobolevnrm McCammon jmccammon
	The Molecular Origin of Like-Charge Arginine−Arginine Pairing in Water [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 27. (9 July 2009), pp. 9041-9045. by Jiří Vondrášek, Philip E. Mason, Jan Heyda, Kim D. Collins, Pavel Jungwirth posted by 4 people willard edws baker-group sobolevnrm
	Poisson–Boltzmann model analysis of binding mRNA cap analogues to the translation initiation factor eIF4E [My Copy] Biophysical Chemistry, Vol. 140, No. 1-3. (March 2009), pp. 16-23. by O. Szklarczyk, J. Zuberek, J. Antosiewicz posted by 4 people baker-group sobolevnrm McCammon jmccammon
	Protein families and their evolution-a structural perspective. [My Copy] Annu Rev Biochem, Vol. 74 (2005), pp. 867-900. by C. A. Orengo, J. M. Thornton posted by 27 people krapnik dfdong ucbcjbm flbarroso kumar_physics yuslinaz ssgong ana barry tjimenez jwm chad_davis Einat Schmidtc marcius sriram_s ezotenko redelings medic0747 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF nigham sim82
	Classical Simulation of Quantum Energy Flow in Biomolecules [My Copy] Physical Review Letters, Vol. 102, No. 11. (2009), 118301. by Gerhard Stock posted by 4 people biblioteca_babel paulschlesinger baker-group sobolevnrm
	Real Lives and White Lies in the Funding of Scientific Research [My Copy] PLoS Biol, Vol. 7, No. 9. (15 September 2009), e1000197. by Peter A. Lawrence posted by 54 people sfalsharif Geknitics Horduna ahmetbakan tsjipko Zephyrus JLab polivares ubcg08l Convention on Knowledge Commons ePortfolio jago Laurentjp pmcarlton nuin Yanno CulCog McCammon barry rodney dmnapolitano Caronte daveGerrard sobolevnrm cyounkin jshigh maren BergmanLab cisevol MurphysLab Khavkin's lab ArtemPankin ifiokoye jclau reyez lilith ngehlenborg eisdur tnhh antonkratz samjlord Torsten_Holmer ommachi rdiaz druvus Borelli pedromts renatomilani Mycology stajich chriswillmott dullhunk Journal picks ppgardne
	Linear response theory in dihedral angle space for protein structural change upon ligand binding [My Copy] Journal of Computational Chemistry, Vol. 30, No. 16. (2009), pp. 2602-2608. by Satoshi Omori, Sotaro Fuchigami, Mitsunori Ikeguchi, Akinori Kidera posted by 4 people barry baker-group sobolevnrm RamuAnandakrishnan
	Uncovering the rules for protein-protein interactions from yeast genomic data. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 10. (10 March 2009), pp. 3752-3757. by Jin Wang, Chunhe Li, Erkang Wang, Xidi Wang posted by 10 people carlk guhjy AbnerCYH baker-group sobolevnrm mariap3636 mstumpf grahamc zwang phoenixzxl
	A roadmap of clustering algorithms: finding a match for a biomedical application [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 297-314. by Bill Andreopoulos, Aijun An, Xiaogang Wang, Michael Schroeder posted by 17 people jfr mhamidi eliasman Gorzomagnificent reyez brianb nuin m509396 jmeppley tmmurali tonamswish VGreiff baker-group sobolevnrm Bioinformatics barry svozil
	Molecular Recognition in Biomolecules Studied by Statistical-Mechanical Integral-Equation Theory of Liquids [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 4. (29 January 2009), pp. 873-886. by Norio Yoshida, Takashi Imai, Saree Phongphanphanee, Andriy Kovalenko, Fumio Hirata posted by 3 people baker-group sobolevnrm willard
	Solvation of a Spherical Cavity in Simple Liquids: Interpolating between the Limits [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 19. (14 May 2009), pp. 6813-6818. by Jianzhong Wu posted by 3 people willard baker-group sobolevnrm
	Solvation Dynamics in Polar Solvents Studied by Means of RISM/Mode-Coupling Theory [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 9. (5 March 2009), pp. 2800-2804. by Katsura Nishiyama, Tsuyoshi Yamaguchi, Fumio Hirata posted by 3 people baker-group sobolevnrm willard
	Unusual Hydrophobic Interactions in Acidic Aqueous Solutions [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 20. (21 May 2009), pp. 7291-7297. by Hanning Chen, Jianqing Xu, Gregory A. Voth posted by 3 people willard baker-group sobolevnrm
	A Mapping of Drug Space from the Viewpoint of Small Molecule Metabolism [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (21 August 2009), e1000474. by James C. Adams, Michael J. Keiser, Li Basuino, et al.Henry F. Chambers, Deok-Sun Lee, Olaf G. Wiest, Patricia C. Babbitt posted by 10 people sobolevnrm nickolay klexa Orengo Group Journal Picks bdessailly pablocarb ptrobajo biomcgary reyez thomaskelder
	A Quick Guide to Teaching R Programming to Computational Biology Students [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000482. by Stephen J. Eglen posted by 69 people idonaldson bsamal nuin kaliczp maren sobolevnrm ltitodem zchen75 artaban421 natstreet jasonn tomhebbron psique Bioinformatics - CRUK Stew eshirdel guhjy polivares ajw fishtank diamantis fastjoe23 kshameer daveGerrard hrogers JoeBanks BergmanLab cisevol srijit hwright Ayest VGreiff welliegirl asadrahman rdiaz ptrobajo heliopais coffeerv Vincent_Rouilly marekrud tnhh barry ansobol Zephyrus walshtp bertelsen fgibson pkonings Borelli klauso dlizcano dswan skembel djkt jclau lwaldron phoenixzxl timhubbard eLearning in Leicester AJCann thegoose dullhunk brianb neils silberbauer daforerog Journal picks ppgardne druvus
	Backbone relaxation coupled to the ionization of internal groups in proteins: A self-guided Langevin dynamics study [My Copy] Biophys. J. (18 July 2008), biophysj.108.130906. by Ana Damjanovic, Xiongwu Wu, Bertrand Garcia-Moreno, Bernard R. Brooks posted by 5 people baker-group sobolevnrm McCammon jmccammon paulschlesinger
	Recognition Dynamics Up to Microseconds Revealed from an RDC-Derived Ubiquitin Ensemble in Solution [My Copy] Science, Vol. 320, No. 5882. (13 June 2008), pp. 1471-1475. by Oliver F. Lange, Nils-Alexander Lakomek, Christophe Fares, et al.Gunnar F. Schroder, Korvin F. A. Walter, Stefan Becker, Jens Meiler, Helmut Grubmuller, Christian Griesinger, Bert L. de Groot posted by 10 people anna_yershova edws paulschlesinger higueruelo barry structural_bioinformatics McCammon jmccammon Chang group cchang
	Random walk in orthogonal space to achieve efficient free-energy simulation of complex systems [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 51. (23 December 2008), pp. 20227-20232. by Lianqing Zheng, Mengen Chen, Wei Yang posted by 6 people sas baker-group sobolevnrm McCammon iivanov phoenixzxl
	Conservation of Side-Chain Dynamics Within a Protein Family [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Anthony B. Law, Ernesto J. Fuentes, Andrew L. Lee posted by 8 people anuragsethi skywalkerus02 pablocarb structural_bioinformatics McCammon barry baker-group sobolevnrm
	Lipids on the move: Simulations of membrane pores, domains, stalks and curves [My Copy] Biochimica et Biophysica Acta (BBA) - Biomembranes (25 October 2008) by S. Marrink, A. Devries, D. Tieleman posted by 5 people baker-group sobolevnrm priyaps choonpeng paulschlesinger
	Localized thermodynamic coupling between hydrogen bonding and microenvironment polarity substantially stabilizes proteins [My Copy] Nat Struct Mol Biol, Vol. 16, No. 7. (14 July 2009), pp. 684-690. by Jianmin Gao, Daryl A. Bosco, Evan T. Powers, Jeffery W. Kelly posted by 4 people sobolevnrm structural_bioinformatics McCammon barry
	Prediction of membrane protein structures with complex topologies using limited constraints [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 5. (3 February 2009), pp. 1409-1414. by P. Barth, B. Wallner, D. Baker posted by 13 people rph dgront OPIG sebk structural_bioinformatics barry krapnik viktor21614 paulschlesinger zwang apaydin agrossfield amishp
	REACH Coarse-Grained Biomolecular Simulation: Transferability between Different Protein Structural Classes [My Copy] Biophys. J. (9 May 2008), biophysj.108.131714. by Kei Moritsugu, Jeremy C. Smith posted by 11 people loison barry baker-group sobolevnrm A_Coletta_Thesis paulschlesinger choonpeng aqeel jmccammon McCammon rok
	Lambda-dynamics free energy simulation methods. [My Copy] Journal of computational chemistry, Vol. 30, No. 11. (August 2009), pp. 1692-1700. by J. L. Knight, C. L. Brooks posted by 5 people ibuch klexa agrossfield baker-group sobolevnrm
	SHARPEN-Systematic Hierarchical Algorithms for Rotamers and Proteins on an Extended Network. [My Copy] Journal of computational chemistry (23 January 2009) by Ilya V V. Loksha, James R R. Maiolo, Cheng W W. Hong, Albert Ng, Christopher D D. Snow posted by 7 people apaydin baker-group sobolevnrm Structural Biology Group TorVergata A_Coletta_Thesis structural_bioinformatics barry