Choon-Peng Chng's Top Recommendations

These recommendations were last updated 47 minutes ago.

	Wiggle-predicting functionally flexible regions from primary sequence. [My Copy] PLoS Comput Biol, Vol. 2, No. 7. (14 July 2006) by J. Gu, M. Gribskov, P. E. Bourne posted by 4 people lna aqeel bicko viktor21614
	Satisfying hydrogen bonding potential in proteins. [My Copy] J Mol Biol, Vol. 238, No. 5. (20 May 1994), pp. 777-793. by I. K. McDonald, J. M. Thornton posted by 6 people aqeel svozil bicko kaarsinogen lna massivemayhem
	Identifying allosteric fluctuation transitions between different protein conformational states as applied to Cyclin Dependent Kinase 2 [My Copy] BMC Bioinformatics, Vol. 8 (07 February 2007), 45. by Jenny Gu, Philip E. Bourne posted by 3 people BragilMassoud lna aqeel
	A consensus view of protein dynamics [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 3. (16 January 2007), pp. 796-801. by Manuel Rueda, Carles Ferrer-Costa, Tim Meyer, et al.Alberto Pérez, Jordi Camps, Adam Hospital, Josep L. Gelpí, Modesto Orozco posted by 16 people Diego_Prada bmduggan lna dimka aqeel aswin rabio grahamc hmk zwang biehl Ema phoenixzxl ras The BMM Dome LamBras
	The Gaussian Network Model: Precise Prediction of Residue Fluctuations and Application to Binding Problems [My Copy] Biophys. J., Vol. 91, No. 10. (15 November 2006), pp. 3589-3599. by Burak Erman posted by 2 people lna aqeel
	Molecular dynamics at the root of expansion of function in the M69L inhibitor-resistant TEM beta-lactamase from Escherichia coli. [My Copy] J Am Chem Soc, Vol. 124, No. 32. (14 August 2002), pp. 9422-9430. by S. O. Meroueh, P. Roblin, D. Golemi, et al.L. Maveyraud, S. B. Vakulenko, Y. Zhang, J. P. Samama, S. Mobashery posted by 2 people lna aqeel
	oGNM: online computation of structural dynamics using the Gaussian Network Model. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006) by L. W. Yang, A. J. Rader, X. Liu, et al.C. J. Jursa, S. C. Chen, H. A. Karimi, I. Bahar posted by 2 people lna aqeel
	Harmonicity and anharmonicity in protein dynamics: a normal mode analysis and principal component analysis. [My Copy] Proteins, Vol. 23, No. 2. (October 1995), pp. 177-186. by S. Hayward, A. Kitao, N. Go posted by 6 people lna aqeel gane5h sobolevnrm baker-group saravan
	Flexibility and conformational entropy in protein-protein binding. [My Copy] Structure, Vol. 14, No. 4. (April 2006), pp. 683-693. by R. Grünberg, M. Nilges, J. Leckner posted by 9 people hmk raik barry pansapiens lna aqeel allmensch structural_bioinformatics Bioinformatics
	New Tools Provide New Insights in NMR Studies of Protein Dynamics [My Copy] Science, Vol. 312, No. 5771. (14 April 2006), pp. 224-228. by Anthony Mittermaier, Lewis E. Kay posted by 6 people xdeupi bmduggan apaydin lna aqeel laurabailey
	Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential. [My Copy] Fold Des, Vol. 2, No. 3. (1997), pp. 173-181. by I. Bahar, A. R. Atilgan, B. Erman posted by 4 people apaydin lna aqeel simone
	Protein flexibility and dynamics using constraint theory. [My Copy] J Mol Graph Model, Vol. 19, No. 1. (2001), pp. 60-69. by M. F. Thorpe, M. Lei, A. J. Rader, D. J. Jacobs, L. A. Kuhn posted by 5 people lna aqeel blackbart LamBras higueruelo
	A flexible approach for understanding protein stability. [My Copy] FEBS Lett, Vol. 576, No. 3. (22 October 2004), pp. 468-476. by D. R. Livesay, S. Dallakyan, G. G. Wood, D. J. Jacobs posted by 5 people radestock lna aqeel Einat structural_bioinformatics
	Constrained geometric simulation of diffusive motion in proteins. [My Copy] Phys Biol, Vol. 2, No. 4. (November 2005) by S. Wells, S. Menor, B. Hespenheide, M. F. Thorpe posted by 4 people apaydin lna aqeel smenor
	Inhibitor binding alters the directions of domain motions in HIV-1 reverse transcriptase. [My Copy] Proteins, Vol. 49, No. 1. (1 October 2002), pp. 61-70. by N. A. Temiz, I. Bahar posted by 2 people lna aqeel
	Allosteric mechanisms of signal transduction. [My Copy] Science, Vol. 308, No. 5727. (3 June 2005), pp. 1424-1428. by J. P. Changeux, S. J. Edelstein posted by 6 people apaydin lna aqeel lenov paurue higueruelo
	Delineation of the allosteric mechanism of a cytidylyltransferase exhibiting negative cooperativity. [My Copy] Nat Struct Biol, Vol. 8, No. 11. (November 2001), pp. 947-952. by S. Y. Stevens, S. Sanker, C. Kent, E. R. Zuiderweg posted by 2 people lna aqeel
	Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor. [My Copy] Proc Natl Acad Sci U S A, Vol. 80, No. 21. (November 1983), pp. 6571-6575. by B. Brooks, M. Karplus posted by 6 people Diego_Prada mkrishna baaden lna aqeel saravan
	Dynamic coupling between the SH2 and SH3 domains of c-Src and Hck underlies their inactivation by C-terminal tyrosine phosphorylation. [My Copy] Cell, Vol. 105, No. 1. (6 April 2001), pp. 115-126. by M. A. Young, S. Gonfloni, G. Superti-Furga, B. Roux, J. Kuriyan posted by 3 people lna aqeel ffranca
	Identification of dynamical correlations within the myosin motor domain by the normal mode analysis of an elastic network model. [My Copy] J Mol Biol, Vol. 346, No. 3. (25 February 2005), pp. 745-759. by W. Zheng, B. Brooks posted by 5 people barry lna aqeel structural_bioinformatics Bioinformatics
	Accommodating protein flexibility in computational drug design. [My Copy] Mol Pharmacol, Vol. 57, No. 2. (February 2000), pp. 213-218. by H. A. Carlson, J. A. McCammon posted by 5 people karinaecomp apaydin lna aqeel blackbart
	Protein unfolding: rigidity lost. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 6. (19 March 2002), pp. 3540-3545. by A. J. Rader, B. M. Hespenheide, L. A. Kuhn, M. F. Thorpe posted by 5 people apaydin lna aqeel blackbart higueruelo
	Coupling between catalytic site and collective dynamics: a requirement for mechanochemical activity of enzymes. [My Copy] Structure (Camb), Vol. 13, No. 6. (June 2005), pp. 893-904. by L. W. Yang, I. Bahar posted by 5 people BragilMassoud baaden lna aqeel chrn
	Searching for new allosteric sites in enzymes. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 6. (December 2004), pp. 706-715. by J. A. Hardy, J. A. Wells posted by 6 people barry mdimmic apaydin lna aqeel higueruelo
	The propagation of binding interactions to remote sites in proteins: analysis of the binding of the monoclonal antibody D1.3 to lysozyme. [My Copy] Proc Natl Acad Sci U S A, Vol. 96, No. 18. (31 August 1999), pp. 10118-10122. by E. Freire posted by 3 people apaydin lna aqeel
	Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 43. (26 October 2004), pp. 15346-15351. by B. Qian, A. R. Ortiz, D. Baker posted by 10 people aqeel ana barry lna marcius dgront structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	An analysis of core deformations in protein superfamilies. [My Copy] Biophys J, Vol. 88, No. 2. (February 2005), pp. 1291-1299. by A. Leo-Macias, P. Lopez-Romero, D. Lupyan, D. Zerbino, A. R. Ortiz posted by 10 people apaydin ana barry lna dimka aqeel insectopalo structural_bioinformatics Bioinformatics edvin
	Change in protein flexibility upon complex formation: analysis of Ras-Raf using molecular dynamics and a molecular framework approach. [My Copy] Proteins, Vol. 56, No. 2. (1 August 2004), pp. 322-337. by H. Gohlke, L. A. Kuhn, D. A. Case posted by 7 people bmduggan barry lna aqeel blackbart structural_bioinformatics Bioinformatics
	Principles of flexible protein-protein docking [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 73, No. 2. (2008), pp. 271-289. by Nelly Andrusier, Efrat Mashiach, Ruth Nussinov, Haim J. Wolfson posted by 5 people bicko aqeel structural_bioinformatics csrocha LamBras
	Allosteric inhibitors of inducible nitric oxide synthase dimerization discovered via combinatorial chemistry. [My Copy] Proc Natl Acad Sci U S A, Vol. 97, No. 4. (15 February 2000), pp. 1506-1511. by K. McMillan, M. Adler, D. S. Auld, et al.J. J. Baldwin, E. Blasko, L. J. Browne, D. Chelsky, D. Davey, R. E. Dolle, K. A. Eagen, S. Erickson, R. I. Feldman, C. B. Glaser, C. Mallari, M. M. Morrissey, M. H. Ohlmeyer, G. Pan, J. F. Parkinson, G. B. Phillips, M. A. Polokoff, N. H. Sigal, R. Vergona, M. Whitlow, T. A. Young, J. J. Devlin posted by 3 people bicko aqeel higueruelo
	A protein-protein docking benchmark. [My Copy] Proteins, Vol. 52, No. 1. (1 July 2003), pp. 88-91. by R. Chen, J. Mintseris, J. Janin, Z. Weng posted by 5 people apaydin timg aqeel bicko Iainios
	Flexible protein-protein docking [My Copy] Current Opinion in Structural Biology In Theory and simulation/Macromolecular assemblages - Joel Janin and Michael Levitt/Edward H Egelman and Andrew GW Leslie, Vol. 16, No. 2. (April 2006), pp. 194-200. by Alexandre M. J. J. Bonvin posted by 15 people timg flbarroso oteri laurabailey dgruiz aqeel bicko yongzhao ima sangeetha gloria Bioinformatics TSRI_MGL insilicodrug higueruelo
	Is one solution good enough? [My Copy] Nature Structural & Molecular Biology, Vol. 13, No. 3., pp. 184-185. by Nicholas Furnham, Tom L. Blundell, Mark A. Depristo, Thomas C. Terwilliger posted by 3 people bicko aqeel dgront
	Improved side-chain modeling for protein-protein docking. [My Copy] Protein Sci, Vol. 14, No. 5. (May 2005), pp. 1328-1339. by C. Wang, O. Schueler-Furman, D. Baker posted by 15 people dgront csrocha barry aqeel jwm bicko yongzhao blackbart bluvsh1 hmk selrac structural_bioinformatics Bioinformatics TSRI_MGL Evangelia
	Protein-Protein Docking Benchmark 2.0: an update. [My Copy] Proteins, Vol. 60, No. 2. (1 August 2005), pp. 214-216. by Julian Mintseris, Kevin Wiehe, Brian Pierce, et al.Robert Anderson, Rong Chen, Joël Janin, Zhiping Weng posted by 10 people marti aqeel julianm bicko chad_davis ima bluvsh1 selrac Iainios boris_aguilar
	The Relationship between the Flexibility of Proteins and their Conformational States on Forming Protein-Protein Complexes with an Application to Protein-Protein Docking [My Copy] Journal of Molecular Biology, Vol. 347, No. 5. (15 April 2005), pp. 1077-1101. by Graham R. Smith, Michael Sternberg, Paul A. Bates posted by 10 people ana barry aqeel bicko yongzhao ttjoseph structural_bioinformatics Bioinformatics TSRI_MGL jteyra
	Flexibility and packing in proteins [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 3. (5 February 2002), pp. 1274-1279. by Bertil Halle posted by 11 people Diego_Prada edws barry baker-group sobolevnrm ana aqeel allmensch hmk structural_bioinformatics Bioinformatics
	Computational redesign of protein-protein interaction specificity [My Copy] Nat Struct Mol Biol, Vol. 11, No. 4. (April 2004), pp. 371-379. by Tanja Kortemme, Lukasz A. Joachimiak, Alex N. Bullock, Aaron D. Schuler, Barry L. Stoddard, David Baker posted by 8 people bmduggan lna jwm bicko ruvido cjeans tale jteyra
	Computational design of protein-protein interactions. [My Copy] Current opinion in chemical biology, Vol. 8, No. 1. (February 2004), pp. 91-97. by Tanja Kortemme, David Baker posted by 8 people bmduggan qluo lna jwm bicko hmk cjeans jteyra
	Computational design of a new hydrogen bond network and at least a 300-fold specificity switch at a protein-protein interface. [My Copy] J Mol Biol, Vol. 361, No. 1. (4 August 2006), pp. 195-208. by L. A. Joachimiak, T. Kortemme, B. L. Stoddard, D. Baker posted by 3 people lna jwm bicko
	A simple physical model for binding energy hot spots in proteinâprotein complexes [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 22. (29 October 2002), pp. 14116-14121. by Tanja Kortemme, David Baker posted by 10 people chemrahul82 onufriev oceanwind lna jwm bicko cjeans hmk skoddet Nielsen group
	Small-molecule inhibitors of protein-protein interactions: progressing towards the dream. [My Copy] Nat Rev Drug Discov, Vol. 3, No. 4. (April 2004), pp. 301-317. by M. R. Arkin, J. A. Wells posted by 10 people semin yuchuanwang cerca mdimmic dgruiz lna bicko dailybiomed Dualsystems ramensky
	PDB file parser and structure class implemented in Python [My Copy] Bioinformatics, Vol. 19, No. 17. (22 November 2003), pp. 2308-2310. by Thomas Hamelryck, Bernard Manderick posted by 9 people edws klexa Structural Biology Group TorVergata oteri dgruiz bicko dgront rabio massivemayhem
	Improved methods for building protein models in electron density maps and the location of errors in these models [My Copy] Acta Crystallographica Section A, Vol. 47, No. 2. (Mar 1991), pp. 110-119. by T. A. Jones, J. Y. Zou, S. W. Cowan, M. Kjeldgaard posted by 1 person aqeel
	Molecular Electron Microscopy: State of the Art and Current Challenges [My Copy] ACS Chemical Biology, Vol. 3, No. 5. (1 May 2008), pp. 268-281. by Henning Stahlberg, Thomas Walz posted by 2 people aqeel zeldin
	Flexible Fitting of High-Resolution X-Ray Structures into Cryoelectron Microscopy Maps Using Biased Molecular Dynamics Simulations☆ [My Copy] Biophysical Journal, Vol. 95, No. 12. (15 December 2008), pp. 5692-5705. by Marek Orzechowski, Florence Tama posted by 1 person aqeel
	Biased coarse-grained molecular dynamics simulation approach for flexible fitting of X-ray structure into cryo electron microscopy maps [My Copy] Journal of Structural Biology (02 October 2009) by Ivan Grubisic, Maxim N. Shokhirev, Marek Orzechowski, Osamu Miyashita, Florence Tama posted by 2 people aqeel paulschlesinger
	Molecular recognition by induced fit: how fit is the concept? [My Copy] News in physiological sciences : an international journal of physiology produced jointly by the International Union of Physiological Sciences and the American Physiological Society, Vol. 16 (August 2001), pp. 171-173. by H. R. Bosshard posted by 1 person aqeel
	An NMA-guided path planning approach for computing large-amplitude conformational changes in proteins. [My Copy] Proteins, Vol. 70, No. 1. (1 January 2008), pp. 131-143. by S. Kirillova, J. Cortés, A. Stefaniu, T. Siméon posted by 1 person aqeel
	Ligand-induced conformational changes in ras p21: a normal mode and energy minimization analysis [My Copy] Journal of Molecular Biology, Vol. 274, No. 1. (21 November 1997), pp. 114-131. by J. Ma posted by 1 person aqeel
	Iterative cluster-NMA: A tool for generating conformational transitions in proteins. [My Copy] Proteins, Vol. 74, No. 3. (15 February 2009), pp. 760-776. by A. D. Schuyler, R. L. Jernigan, P. K. Qasba, B. Ramakrishnan, G. S. Chirikjian posted by 3 people baker-group sobolevnrm aqeel
	cAMP-dependent protein kinase: crystallographic insights into substrate recognition and phosphotransfer. [My Copy] Protein science : a publication of the Protein Society, Vol. 3, No. 2. (February 1994), pp. 176-187. by Madhusudan, E. A. Trafny, N. H. Xuong, et al.J. A. Adams, L. F. Ten Eyck, S. S. Taylor, J. M. Sowadski posted by 1 person aqeel
	Crystal structure of Yersinia protein tyrosine phosphatase at 2.5 A and the complex with tungstate [My Copy] Nature, Vol. 370, No. 6490. (1994), pp. 571-575. by Jeanne A. Stuckey, Heidi L. Schubert, Eric B. Fauman, Zhong-Yin Zhang, Jack E. Dixon, Mark A. Saper posted by 1 person aqeel
	Freezing immunoglobulins to see them move. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 17. (27 April 2004), pp. 6466-6471. by L. Bongini, D. Fanelli, F. Piazza, P. De Los Rios, S. Sandin, U. Skoglund posted by 1 person aqeel
	Contrasting IgG Structures Reveal Extreme Asymmetry and Flexibility [My Copy] Journal of Molecular Biology, Vol. 319, No. 1. (24 May 2002), pp. 9-18. by E. Saphire, R. Stanfield, M. Maxcrispin, et al.P. Parren, P. Rudd, R. Dwek, D. Burton, I. Wilson posted by 1 person aqeel
	Fluctuation and Cross-correlation Analysis of Protein Motions Observed in Nanosecond Molecular Dynamics Simulations [My Copy] Journal of Molecular Biology, Vol. 252, No. 4. (29 September 1995), pp. 492-503. by P. Hünenberger posted by 2 people bmduggan aqeel
	Fluctuations and correlations in crystalline protein dynamics: a simulation analysis of staphylococcal nuclease. [My Copy] Biophysical journal, Vol. 88, No. 4. (April 2005), pp. 2554-2563. by L. Meinhold, J. C. Smith posted by 1 person aqeel
	Systematic Multiscale Parameterization of Heterogeneous Elastic Network Models of Proteins [My Copy] Biophys. J., Vol. 95, No. 9. (1 November 2008), pp. 4183-4192. by Edward Lyman, Jim Pfaendtner, Gregory A. Voth posted by 3 people baker-group sobolevnrm aqeel
	Fitting Low-Resolution Cryo-EM Maps of Proteins Using Constrained Geometric Simulations [My Copy] Biophys. J., Vol. 94, No. 5. (1 March 2008), pp. 1613-1621. by Craig C. Jolley, Stephen A. Wells, Petra Fromme, M. F. Thorpe posted by 1 person aqeel
	Identification of Specific Interactions that Drive Ligand-induced Closure in Five Enzymes with Classic Domain Movements [My Copy] Journal of Molecular Biology, Vol. 339, No. 4. (June 2004), pp. 1001-1021. by S. Hayward posted by 1 person aqeel
	Radius of gyration as an indicator of protein structure compactness [My Copy] Molecular Biology, Vol. 42, No. 4. (2008), pp. 623-628. by M. Lobanov, N. Bogatyreva, O. Galzitskaya posted by 1 person aqeel
	Modeling side-chain conformation [My Copy] Current Opinion in Structural Biology, Vol. 6, No. 2. (April 1996), pp. 217-221. by M. Vásquez posted by 1 person aqeel
	Relating sequence evolution of HIV1-protease to its underlying molecular mechanics [My Copy] Gene, Vol. 422, No. 1-2. (01 October 2008), pp. 30-36. by K. Hamacher posted by 2 people mijogiffin aqeel
	Coarse-grained dynamics of the receiver domain of NtrC: fluctuations, correlations and implications for allosteric cooperativity. [My Copy] Proteins, Vol. 73, No. 1. (October 2008), pp. 218-227. by M. S. Liu, B. D. Todd, S. Yao, Z. P. Feng, R. S. Norton, R. J. Sadus posted by 1 person aqeel
	A minimalist network model for coarse-grained normal mode analysis and its application to biomolecular x-ray crystallography. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (1 October 2008) by Mingyang Lu, Jianpeng Ma posted by 12 people baker-group sobolevnrm aqeel apaydin ruvido agrossfield Nielsen group skoddet structural_bioinformatics McCammon Bioinformatics barry
	CONFORMATIONAL TRANSITION PATHWAYS EXPLORED BY MONTE CARLO SIMULATION INTEGRATED WITH COLLECTIVE MODES [My Copy] Biophys. J. (1 August 2008), biophysj.107.128447. by Nigar Kantarci-Carsibasi, Turkan Haliloglu, Pemra Doruker posted by 7 people baker-group sobolevnrm paulschlesinger oteri viktor21614 sunhwan aqeel
	Flexible ligand docking to multiple receptor conformations: a practical alternative. [My Copy] Current opinion in structural biology, Vol. 18, No. 2. (April 2008), pp. 178-184. by M. Totrov, R. Abagyan posted by 7 people klexa oteri structural_bioinformatics McCammon Bioinformatics barry aqeel
	Topologically Based Multipolar Reconstruction of Electrostatic Interactions in Multiscale Simulations of Proteins [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 8. (1 August 2008), pp. 1378-1385. by Michele Cascella, Marilisa A. Neri, Paolo Carloni, Matteo D. Peraro posted by 2 people rdf aqeel
	Energy landscape along an enzymatic reaction trajectory: hinges or cracks? [My Copy] HFSP Journal, Vol. 2, No. 2. (2008), pp. 61-64. by Paul C. Whitford, José N. Onuchic, Peter G. Wolynes posted by 3 people barry sunhwan aqeel
	Use of normal modes for structural modeling of proteins: the case study of rat heme oxygenase 1 [My Copy] European Biophysics Journal, Vol. 37, No. 7. (2008), pp. 1157-1165. by Jean-Didier Marechal, David Perahia posted by 1 person aqeel
	Target Flexibility: An Emerging Consideration in Drug Discovery and Design. [My Copy] Journal of medicinal chemistry (12 September 2008) by Pietro Cozzini, Glen E. Kellogg, Francesca Spyrakis, et al.Donald J. Abraham, Gabriele Costantino, Andrew Emerson, Francesca Fanelli, Holger Gohlke, Leslie A. Kuhn, Garrett M. Morris, Modesto Orozco, Thelma A. Pertinhez, Menico Rizzi, Christoph A. Sotriffer posted by 3 people aqeel reyez higueruelo
	Geometric criteria of hydrogen bonds in proteins and identification of `bifurcated' hydrogen bonds [My Copy] Protein Engineering (May 2002), pp. 359-363. by Ivan Y. Torshin, Irene T. Weber, Robert W. Harrison posted by 2 people aqeel carterb
	Docking and High Throughput Docking: Successes and the Challenge of Protein Flexibility [My Copy] Current Computer - Aided Drug Design, Vol. 4, No. 3. (September 2008), pp. 221-234. by Claudio N. Cavasotto, Narender Singh posted by 1 person aqeel
	Evolutionary conservation of protein vibrational dynamics. [My Copy] Gene, Vol. 422, No. 1-2. (1 October 2008), pp. 7-13. by S. Maguid, S. Fernandez-Alberti, J. Echave posted by 3 people edvin aqeel gisle
	Intercellular Adhesion Molecule-3 Binding of Integrin alphaLbeta2 Requires Both Extension and Opening of the Integrin Headpiece [My Copy] J Immunol, Vol. 180, No. 7. (1 April 2008), pp. 4793-4804. by Xiao-Yan Tang, Yan-Feng Li, Suet-Mien Tan posted by 1 person aqeel
	Allosteric Communication in Myosin V: From Small Conformational Changes to Large Directed Movements [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000129. by M. Cecchini, A. Houdusse, M. Karplus posted by 3 people okapi aqeel barry
	Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 32. (12 August 2008), pp. 11182-11187. by Kei-ichi Okazaki, Shoji Takada posted by 11 people oteri bmduggan xdeupi okapi aqeel raik ruvido structural_bioinformatics McCammon barry zwang
	Alternating evolutionary pressure in a genetic algorithm facilitates protein model selection [My Copy] BMC Structural Biology, Vol. 8 (01 August 2008), 34. by Marc N. Offman, Alex L. Tournier, Paul A. Bates posted by 1 person aqeel
	Functional and computational studies of the ligand-associated metal binding site of beta3 integrins. [My Copy] Proteins, Vol. 71, No. 4. (June 2008), pp. 1779-1791. by M. Murcia, M. Jirouskova, J. Li, B. S. Coller, M. Filizola posted by 1 person aqeel
	Prediction by Graph Theoretic Measures of Structural Effects in Proteins Arising from Non-Synonymous Single Nucleotide Polymorphisms [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (25 July 2008), e1000135. by Tammy M. Cheng, Yu-En Lu, Michele Vendruscolo, Pietro Lio', Tom L. Blundell posted by 6 people AbnerCYH aqeel aramesh2 GeeSharpMinor aalibes GustavoLacerda
	The Croonian lecture 2006. Structure of the living cell. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 363, No. 1502. (27 July 2008), pp. 2379-2391. by I. D. Campbell posted by 1 person aqeel
	Recognition-induced conformational changes in protein-protein docking. [My Copy] Current pharmaceutical biotechnology, Vol. 9, No. 2. (April 2008), pp. 77-86. by M. F. Lensink, R. Méndez posted by 2 people flbarroso aqeel
	Einfluss der Configuration auf die Wirkung der Enzyme [My Copy] Berichte der deutschen chemischen Gesellschaft, Vol. 27, No. 3. (1894), pp. 2985-2993. by Emil Fischer posted by 2 people aqeel nigham
	A Unification of the Elastic Network Model and the Gaussian Network Model for Optimal Description of Protein Conformational Motions and Fluctuations [My Copy] Biophys. J., Vol. 94, No. 10. (15 May 2008), pp. 3853-3857. by Wenjun Zheng posted by 2 people simone aqeel
	Large scale motions in a biosensor protein glucose oxidase: A combined approach by QENS, normal mode analysis, and molecular dynamics studies [My Copy] Biopolymers, Vol. 89, No. 7. (2008), pp. 582-594. by Sujit S. Tatke, Chun K. Loong, Nicolas D'Souza, Richard T. Schoephoerster, M. Prabhakaran posted by 1 person aqeel
	Evolutionary divergence of protein structure: The linearly forced elastic network model [My Copy] Chemical Physics Letters, Vol. 457, No. 4-6. (27 May 2008), pp. 413-416. by Julián Echave posted by 1 person aqeel
	Collective motions of rigid fragments in protein structures from smoothed electron density distributions. [My Copy] Journal of computational chemistry, Vol. 29, No. 9. (15 July 2008), pp. 1472-1489. by L. Leherte, D. P. Vercauteren posted by 1 person aqeel
	Proteins: coexistence of stability and flexibility. [My Copy] Physical review letters, Vol. 100, No. 20. (23 May 2008) by S. Reuveni, R. Granek, J. Klafter posted by 1 person aqeel
	Protein−Ligand Docking Accounting for Receptor Side Chain and Global Flexibility in Normal Modes: Evaluation on Kinase Inhibitor Cross Docking [My Copy] J. Med. Chem., Vol. 51, No. 12. (26 June 2008), pp. 3499-3506. by Andreas May, Martin Zacharias posted by 2 people higueruelo aqeel
	MinActionPath: maximum likelihood trajectory for large-scale structural transitions in a coarse-grained locally harmonic energy landscape. [My Copy] Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007) by J. Franklin, P. Koehl, S. Doniach, M. Delarue posted by 1 person aqeel
	Interaction of Anesthetics with Open and Closed Conformations of a Potassium Channel Studied via Molecular Dynamics and Normal Mode Analysis [My Copy] Biophys. J., Vol. 94, No. 11. (1 June 2008), pp. 4260-4269. by Satyavani Vemparala, Carmen Domene, Michael L. Klein posted by 2 people mengcite aqeel
	Stereochemical Criteria for Polypeptide and Protein Chain ConformationsII. Allowed Conformations for a Pair of Peptide Units [My Copy] Biophysical Journal, Vol. 5, No. 6. (1 November 1965), pp. 909-933. by C. Ramakrishnan posted by 3 people Diego_Prada allmensch aqeel
	Intrinsic [phi],[psi] propensities of amino acids, derived from the coil regions of known structures [My Copy] Nat Struct Mol Biol, Vol. 2, No. 7. (July 1995), pp. 596-603. by Mark B. Swindells, Malcolm W. Macarthur, Janet M. Thornton posted by 1 person aqeel
	Collective protein dynamics in relation to function [My Copy] Current Opinion in Structural Biology, Vol. 10, No. 2. (1 April 2000), pp. 165-169. by H. Berendsen posted by 3 people bmduggan aqeel barry
	Transition networks for modeling the kinetics of conformational change in macromolecules [My Copy] Current Opinion in Structural Biology In Theory and simulation / Macromolecular assemblages, Vol. 18, No. 2. (April 2008), pp. 154-162. by Frank Noé, Stefan Fischer posted by 9 people Diego_Prada aqeel barry sobolevnrm structural_bioinformatics baker-group paulschlesinger McCammon toerst
	The MARTINI Coarse-Grained Force Field: Extension to Proteins [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 5. (1 May 2008), pp. 819-834. by Luca Monticelli, Senthil K. Kandasamy, Xavier Periole, Ronald G. Larson, D. Peter Tieleman, Siewert-Jan Marrink posted by 17 people arnaucordomi dimka oteri sunrise flbarroso Structural Biology Group TorVergata A_Coletta_Thesis krapnik Molecular dynamics in MSU Marine middledomain sobolevnrm baker-group Ema aqeel DanielParton softsimu
	Normal mode partitioning of Langevin dynamics for biomolecules [My Copy] The Journal of Chemical Physics, Vol. 128, No. 14. (2008) by Christopher R. Sweet, Paula Petrone, Vijay S. Pande, Jesús A. Izaguirre posted by 4 people paulschlesinger sobolevnrm baker-group aqeel
	Recognition-induced Conformational Changes in Protein-Protein Docking [My Copy] Current Pharmaceutical Biotechnology, Vol. 9, No. 2. (April 2008), pp. 77-86. by Lensink, M. F., Mendez, R. posted by 2 people viktor21614 aqeel
	Geometry-based sampling of conformational transitions in proteins. [My Copy] Structure (London, England : 1993), Vol. 15, No. 11. (13 November 2007), pp. 1482-1492. by Daniel Seeliger, Jürgen Haas, Bert L. de Groot posted by 3 people arifor aqeel cactus
	Computational techniques for efficient conformational sampling of proteins [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Adam Liwo, Cezary Czaplewski, Stanislaw Oldziej, Harold A. Scheraga posted by 4 people apaydin barry aqeel j3xucite