cmzmasek's Publications

There are 13 publications listed

	phyloXML: XML for evolutionary biology and comparative genomics [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 356. by Mira V. Han, Christian M. Zmasek posted to xml_language phyloxml phylogenomics phylogenetics phylogenetic_standards bioinformatics by cmzmasek on 2009-10-27 17:24:58 as along with 6 people and 1 group operon cisevol kshameer Geknitics druvus phoenixzxl BergmanLab
	Regulation of the yeast HIS7 gene by the global transcription factor Abf1p. [My Copy] Molecular & general genetics : MGG, Vol. 256, No. 2. (September 1997), pp. 136-146. by C. Springer, S. Krappmann, M. Künzler, C. Zmasek, G. H. Braus posted to yeast by cmzmasek on 2009-01-28 22:54:26 as
	Immune system dysfunction and autoimmune disease in mice lacking Emk (Par-1) protein kinase. [My Copy] Molecular and cellular biology, Vol. 21, No. 9. (May 2001), pp. 3206-3219. by J. B. Hurov, T. S. Stappenbeck, C. M. Zmasek, et al.L. S. White, S. H. Ranganath, J. H. Russell, A. C. Chan, K. M. Murphy, H. Piwnica-Worms posted to emk par by cmzmasek on 2009-01-28 22:53:40 as
	LumberJack: a heuristic tool for sequence alignment exploration and phylogenetic inference. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 12. (12 August 2004), pp. 1977-1979. by C. J. Lawrence, C. M. Zmasek, R. K. Dawe, R. L. Malmberg posted to methods by cmzmasek on 2009-01-28 22:52:35 as
	Emerging Data Standards for Phylogenomics Research [My Copy] Proceedings of TDWG (2008) by Christian M. Zmasek posted to phylogenetic_standards phyloxml by cmzmasek on 2009-01-28 22:50:03 as
	The amphioxus genome illuminates vertebrate origins and cephalochordate biology [My Copy] Genome Res., Vol. 18, No. 7. (1 July 2008), pp. 1100-1111. by Linda Z. Holland, Ricard Albalat, Kaoru Azumi, et al.Elia Benito-Gutierrez, Matthew J. Blow, Marianne Bronner-Fraser, Frederic Brunet, Thomas Butts, Simona Candiani, Larry J. Dishaw, David E. Ferrier, Jordi Garcia-Fernandez, Jeremy J. Gibson-Brown, Carmela Gissi, Adam Godzik, Finn Hallbook, Dan Hirose, Kazuyoshi Hosomichi, Tetsuro Ikuta, Hidetoshi Inoko, Masanori Kasahara, Jun Kasamatsu, Takeshi Kawashima, Ayuko Kimura, Masaaki Kobayashi, Zbynek Kozmik, Kaoru Kubokawa, Vincent Laudet, Gary W. Litman, Alice C. Mchardy, Daniel Meulemans, Masaru Nonaka, Robert P. Olinski, Zeev Pancer, Len A. Pennacchio, Mario Pestarino, Jonathan P. Rast, Isidore Rigoutsos, Marc Robinson-Rechavi, Graeme Roch, Hidetoshi Saiga, Yasunori Sasakura, Masanobu Satake, Yutaka Satou, Michael Schubert, Nancy Sherwood, Takashi Shiina, Naohito Takatori, Javier Tello, Pavel Vopalensky, Shuichi Wada, Anlong Xu, Yuzhen Ye, Keita Yoshida, Fumiko Yoshizaki, Jr-Kai Yu, Qing Zhang, Christian M. Zmasek, Pieter J. de Jong, Kazutoyo Osoegawa, Nicholas H. Putnam, Daniel S. Rokhsar, Noriyuki Satoh, Peter W. Holland posted to amphioxus genome genome-analysis genome-sequence by cmzmasek on 2009-01-28 22:46:00 as along with 3 people shirleym dchughes gulsacan
	Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). [My Copy] Omics : a journal of integrative biology, Vol. 10, No. 2. (2006), pp. 231-237. by J. Leebens-Mack, T. Vision, E. Brenner, et al.J. E. Bowers, S. Cannon, M. J. Clement, C. W. Cunningham, C. dePamphilis, R. deSalle, J. J. Doyle, J. A. Eisen, X. Gu, J. Harshman, R. K. Jansen, E. A. Kellogg, E. V. Koonin, B. D. Mishler, H. Philippe, J. C. Pires, Y. L. Qiu, S. Y. Rhee, K. Sjölander, D. E. Soltis, P. S. Soltis, D. W. Stevenson, K. Wall, T. Warnow, C. Zmasek posted to phylogenetic_standards by cmzmasek on 2009-01-28 22:45:09 as along with 3 people and 1 group AaronDarling jandot rvosa FAB-lab
	Evolution of the Human Ion Channel Set [My Copy] Combinatorial Chemistry & High Throughput Screening, Vol. 12, No. 1., pp. 2-23. by Timothy J. Jegla, Christian M. Zmasek, Serge Batalov, Surendra K. Nayak posted to ion_channel_evolution by cmzmasek on 2009-01-28 22:43:09 as
	ATV: display and manipulation of annotated phylogenetic trees. [My Copy] Bioinformatics, Vol. 17, No. 4. (April 2001), pp. 383-384. by C. M. Zmasek, S. R. Eddy posted to methods phylogenetics visualization by cmzmasek on 2009-01-28 22:39:37 as along with 3 people jarasch incovoma gjuggler
	RIO: analyzing proteomes by automated phylogenomics using resampled inference of orthologs. [My Copy] BMC Bioinformatics, Vol. 3 (16 May 2002) by C. M. Zmasek, S. R. Eddy posted to computational-biology gene_duplication_inference methods phylogenomics by cmzmasek on 2009-01-28 22:38:10 as along with 3 people and 1 group indigoviolet cjeans biehl EisenLab
	A simple algorithm to infer gene duplication and speciation events on a gene tree [My Copy] Bioinformatics, Vol. 17, No. 9. (1 September 2001), pp. 821-828. by Christian M. Zmasek, Sean R. Eddy posted to algorithms computational-biology gene_duplication_inference methods by cmzmasek on 2009-01-28 22:35:45 as along with 2 people calderonv stajich
	Novel genes dramatically alter regulatory network topology in amphioxus [My Copy] Genome Biology, Vol. 9, No. 8. (2008) by Qing Zhang, Christian Zmasek, Larry Dishaw, et al.Gail M. Mueller, Yuzhen Ye, Gary Litman, Adam Godzik posted to amphioxus domain-combinations domain-evolution domain-shuffling network-evolution networks by cmzmasek on 2008-08-05 05:27:45 as
	Surprising complexity of the ancestral apoptosis network [My Copy] Genome Biology, Vol. 8 (24 October 2007), R226. by Christian M. Zmasek, Qing Zhang, Yuzhen Ye, Adam Godzik posted to apaf-1 apoptosis apoptosis-evolution bcl-2 complexity network-evolution by cmzmasek on 2007-10-26 01:06:48 as along with 4 people and 1 group thegoose2 tny tharris cjeans C. elegans / WormBase