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	Integrated array-comparative genomic hybridization and expression array profiles identify clinically relevant molecular subtypes of glioblastoma. [My Copy] Cancer research, Vol. 65, No. 5. (1 March 2005), pp. 1678-1686. by Janice M. Nigro, Anjan Misra, Li Zhang, et al.Ivan Smirnov, Howard Colman, Chandi Griffin, Natalie Ozburn, Mingang Chen, Edward Pan, Dimpy Koul, Alfred K. Yung, Burt G. Feuerstein, Kenneth D. Aldape posted by 5 people aezrin srp33 chrisamiller jfr bioguru2000
	Integrating data on DNA copy number with gene expression levels and drug sensitivities in the NCI-60 cell line panel. [My Copy] Mol Cancer Ther, Vol. 5, No. 4. (April 2006), pp. 853-867. by K. J. Bussey, K. Chin, S. Lababidi, et al.M. Reimers, W. C. Reinhold, W. L. Kuo, F. Gwadry, Ajay, H. Kouros-Mehr, J. Fridlyand, A. Jain, C. Collins, S. Nishizuka, G. Tonon, A. Roschke, K. Gehlhaus, I. Kirsch, D. A. Scudiero, J. W. Gray, J. N. Weinstein posted by 3 people jfr rdiaz bioguru2000
	Impact of DNA amplification on gene expression patterns in breast cancer. [My Copy] Cancer Res, Vol. 62, No. 21. (1 November 2002), pp. 6240-6245. by E. Hyman, P. Kauraniemi, S. Hautaniemi, et al.M. Wolf, S. Mousses, E. Rozenblum, M. Ringnér, G. Sauter, O. Monni, A. Elkahloun, O. P. Kallioniemi, A. Kallioniemi posted by 3 people ronglais jfr bioguru2000
	High-resolution analysis of DNA copy number using oligonucleotide microarrays. [My Copy] Genome Res, Vol. 14, No. 2. (February 2004), pp. 287-295. by G. R. Bignell, J. Huang, J. Greshock, et al.S. Watt, A. Butler, S. West, M. Grigorova, K. W. Jones, W. Wei, M. R. Stratton, P. A. Futreal, B. Weber, M. H. Shapero, R. Wooster posted by 2 people jfr bioguru2000
	Prediction of chromosomal aneuploidy from gene expression data [My Copy] Genes, Chromosomes and Cancer, Vol. 9999, No. 9999. (2006), NA. by Libi Hertzberg, David R. Betts, Susana C. Raimondi, et al.Beat W. Schäfer, Daniel A. Notterman, Eytan Domany, Shai Izraeli posted by 3 people GM_CVK jfr bioguru2000
	CARAT: a novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by J. Huang, W. Wei, J. Chen, et al.J. Zhang, G. Liu, X. Di, R. Mei, S. Ishikawa, H. Aburatani, K. W. Jones, M. H. Shapero posted by 4 people jfr rdiaz bioguru2000 Bioinformatics
	What is principal component analysis? [My Copy] Nature Biotechnology, Vol. 26, No. 3. (01 March 2008), pp. 303-304. by Markus Ringner posted by 73 people singhsh Jporci tnhh ruvido ucbcjbm daforerog Diego_Prada abellogin nguizard thegoose2 arsyed Zephyrus flips svozil VGreiff kaniko ssgong Yanno guhjy operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega zhouyu rsantana sobolevnrm baker-group fryanpan kengg rvosa FAB-lab dekay23 adacier Bioinformatics hpaces waghsk rchauhan pavanghatty kristgy jfr bibay2004 xingxu quianominorleo craigwilson06 ashko markusd dayjm dimka i-stevenson chrissp100 tharris ale mjoach HugoMarcelo jdiezperezj rrbarb Nici
	The Genomic Landscapes of Human Breast and Colorectal Cancers. [My Copy] Science (11 October 2007) by Laura D D. Wood, D Williams W. Parsons, Siân Jones, et al.Jimmy Lin, Tobias Sjöblom, Rebecca J J. Leary, Dong Shen, Simina M M. Boca, Thomas Barber, Janine Ptak, Natalie Silliman, Steve Szabo, Zoltan Dezso, Vadim Ustyanksky, Tatiana Nikolskaya, Yuri Nikolsky, Rachel Karchin, Paul A A. Wilson, Joshua S S. Kaminker, Zemin Zhang, Randal Croshaw, Joseph Willis, Dawn Dawson, Michail Shipitsin, James K V K. Willson, Saraswati Sukumar, Kornelia Polyak, Ben Ho H. Park, Charit L L. Pethiyagoda, P V Krishna V. Pant, Dennis G G. Ballinger, Andrew B B. Sparks, James Hartigan, Douglas R R. Smith, Erick Suh, Nickolas Papadopoulos, Phillip Buckhaults, Sanford D D. Markowitz, Giovanni Parmigiani, Kenneth W W. Kinzler, Victor E E. Velculescu, Bert Vogelstein posted by 19 people zufar ssgong daed guhjy tmmurali jfr rdiaz eisei ramensky massivemayhem bioyang cabbagezs xingxu shikin renatomilani VUMCGenomics gwenknight cerami srp33
	Patterns of somatic mutation in human cancer genomes [My Copy] Nature, Vol. 446, No. 7132. (08 March 2007), pp. 153-158. by Christopher Greenman, Philip Stephens, Raffaella Smith, et al.Gillian L. Dalgliesh, Christopher Hunter, Graham Bignell, Helen Davies, Jon Teague, Adam Butler, Claire Stevens, Sarah Edkins, Sarah O/'Meara, Imre Vastrik, Esther E. Schmidt, Tim Avis, Syd Barthorpe, Gurpreet Bhamra, Gemma Buck, Bhudipa Choudhury, Jody Clements, Jennifer Cole, Ed Dicks, Simon Forbes, Kris Gray, Kelly Halliday, Rachel Harrison, Katy Hills, Jon Hinton, Andy Jenkinson, David Jones, Andy Menzies, Tatiana Mironenko, Janet Perry, Keiran Raine, Dave Richardson, Rebecca Shepherd, Alexandra Small, Calli Tofts, Jennifer Varian, Tony Webb, Sofie West, Sara Widaa, Andy Yates, Daniel P. Cahill, David N. Louis, Peter Goldstraw, Andrew G. Nicholson, Francis Brasseur, Leendert Looijenga, Barbara L. Weber, Yoke-Eng Chiew, Anna deFazio, Mel F. Greaves, Anthony R. Green, Peter Campbell, Ewan Birney, Douglas F. Easton, Georgia Chenevix-Trench, Min-Han Tan, Sok K. Khoo, Bin T. Teh, Siu T. Yuen, Suet Y. Leung, Richard Wooster, P. Andrew Futreal, Michael R. Stratton posted by 16 people Neeperando xingxu ssgong dbensasson koller kentsis jfr massivemayhem efge Garamonfok daed Petersarkies ramensky frohike cerami srp33
	PTEN Expression and KRAS Mutations on Primary Tumors and Metastases in the Prediction of Benefit From Cetuximab Plus Irinotecan for Patients With Metastatic Colorectal Cancer [My Copy] J Clin Oncol, Vol. 27, No. 16. (1 June 2009), pp. 2622-2629. by Fotios Loupakis, Luca Pollina, Irene Stasi, et al.Annamaria Ruzzo, Mario Scartozzi, Daniele Santini, Gianluca Masi, Francesco Graziano, Chiara Cremolini, Eliana Rulli, Emanuele Canestrari, Niccola Funel, Gaia Schiavon, Iacopo Petrini, Mauro Magnani, Giuseppe Tonini, Daniela Campani, Irene Floriani, Stefano Cascinu, Alfredo Falcone posted by 1 person jfr
	Chromosomal instability determines taxane response. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 21. (26 May 2009), pp. 8671-8676. by Charles Swanton, Barbara Nicke, Marion Schuett, et al.Aron C. Eklund, Charlotte Ng, Qiyuan Li, Thomas Hardcastle, Alvin Lee, Rajat Roy, Philip East, Maik Kschischo, David Endesfelder, Paul Wylie, Se Nyun N. Kim, Jie-Guang G. Chen, Michael Howell, Thomas Ried, Jens K. Habermann, Gert Auer, James D. Brenton, Zoltan Szallasi, Julian Downward posted by 1 person jfr
	Local recurrence after breast-conserving therapy in relation to gene expression patterns in a large series of patients. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 15, No. 12. (15 June 2009), pp. 4181-4190. by Bas Kreike, Hans Halfwerk, Nicola Armstrong, et al.Peter Bult, John A. Foekens, Sanne C. Veltkamp, Dimitry S. Nuyten, Harry Bartelink, Marc J. van de Vijver posted by 1 person jfr
	Variable slope normalization of reverse phase protein arrays [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1384-1389. by E. Shannon Neeley, Steven M. Kornblau, Kevin R. Coombes, Keith A. Baggerly posted by 1 person jfr
	Multicenter validation of a 1,550-gene expression profile for identification of tumor tissue of origin. [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 27, No. 15. (20 May 2009), pp. 2503-2508. by Federico A. Monzon, Maureen Lyons-Weiler, Ljubomir J. Buturovic, et al.C. Ted Rigl, W. David Henner, Christin Sciulli, Catherine I. Dumur, Fabiola Medeiros, Glenda G. Anderson posted by 1 person jfr
	Ki67 index, HER2 status, and prognosis of patients with luminal B breast cancer. [My Copy] Journal of the National Cancer Institute, Vol. 101, No. 10. (20 May 2009), pp. 736-750. by Maggie C. Cheang, Stephen K. Chia, David Voduc, et al.Dongxia Gao, Samuel Leung, Jacqueline Snider, Mark Watson, Sherri Davies, Philip S. Bernard, Joel S. Parker, Charles M. Perou, Matthew J. Ellis, Torsten O. Nielsen posted by 2 people zufar jfr
	Unsupervised selection of highly coexpressed and noncoexpressed genes using a consensus clustering approach. [My Copy] Omics : a journal of integrative biology, Vol. 13, No. 3. (June 2009), pp. 219-237. by Tung T. Nguyen, Richard S. Nowakowski, Ioannis P. Androulakis posted by 1 person jfr
	Mining metastasis related genes by primary-secondary tumor comparisons from large-scale databases. [My Copy] BMC bioinformatics, Vol. 10 Suppl 3 (2009) by Sangwoo Kim, Doheon Lee posted by 1 person jfr
	Reliability and reproducibility of a RNA preamplification method for low-density array analysis from formalin-fixed paraffin-embedded breast cancer samples. [My Copy] Diagnostic molecular pathology : the American journal of surgical pathology, part B, Vol. 18, No. 2. (June 2009), pp. 112-118. by Paola Ciotti, Anna Garuti, Alberto Ballestrero, et al.Gabriella Cirmena, Maurizio Chiaramondia, Paola Baccini, Emilia Bellone, Paola Mandich posted by 1 person jfr
	Selection of REFERENCE genes for normalization of qRT-PCR data derived from FFPE breast tumors. [My Copy] Diagnostic molecular pathology : the American journal of surgical pathology, part B, Vol. 18, No. 2. (June 2009), pp. 103-107. by Suzanne Drury, Helen Anderson, Mitch Dowsett posted by 1 person jfr
	Mining subspace clusters from DNA microarray data using large itemset techniques. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 5. (May 2009), pp. 745-768. by Ye-In I. Chang, Jiun-Rung R. Chen, Yueh-Chi C. Tsai posted by 1 person jfr
	A Regularized Method for Selecting Nested Groups of Relevant Genes from Microarray Data [My Copy] (10 Sep 2008) by Christine De Mol, Sofia Mosci, Magali Traskine, Alessandro Verri posted by 1 person jfr
	Breast Cancer Subtypes and Response to Docetaxel in Node-Positive Breast Cancer: Use of an Immunohistochemical Definition in the BCIRG 001 Trial [My Copy] J Clin Oncol (9 February 2009), JCO.2008.18.1024. by Judith Hugh, John Hanson, Maggie C. Cheang, et al.Torsten O. Nielsen, Charles M. Perou, Charles Dumontet, John Reed, Maryla Krajewska, Isabelle Treilleux, Matthieu Rupin, Emmanuelle Magherini, John Mackey, Miguel Martin, Charles Vogel posted by 1 person jfr
	Combining chromosomal arm status and significantly aberrant genomic locations reveals new cancer subtypes. [My Copy] Cancer informatics, Vol. 7 (2009), pp. 91-104. by Tal Shay, Wanyu L. Lambiv, Anat Reiner-Benaim, Monika E. Hegi, Eytan Domany posted by 1 person jfr
	Genomic Grade Index Is Associated With Response to Chemotherapy in Patients With Breast Cancer [My Copy] J Clin Oncol, Vol. 27, No. 19. (1 July 2009), pp. 3185-3191. by Cornelia Liedtke, Christos Hatzis, William F. Symmans, et al.Christine Desmedt, Benjamin Haibe-Kains, Vicente Valero, Henry Kuerer, Gabriel N. Hortobagyi, Martine Piccart-Gebhart, Christos Sotiriou, Lajos Pusztai posted by 1 person jfr
	Quantitative assessment of tissue biomarkers and construction of a model to predict outcome in breast cancer using multiple imputation. [My Copy] Cancer informatics, Vol. 7 (2009), pp. 29-40. by John W. Emerson, Marisa Dolled-Filhart, Lyndsay Harris, David L. Rimm, David P. Tuck posted by 1 person jfr
	Network-based support vector machine for classification of microarray samples. [My Copy] BMC bioinformatics, Vol. 10 Suppl 1 (2009) by Yanni Zhu, Xiaotong Shen, Wei Pan posted by 2 people iskathy jfr
	Aurora-A expression is independently associated with chromosomal instability in colorectal cancer. [My Copy] Neoplasia (New York, N.Y.), Vol. 11, No. 5. (May 2009), pp. 418-425. by Yoshifumi Baba, Katsuhiko Nosho, Kaori Shima, et al.Natsumi Irahara, Shoko Kure, Saori Toyoda, Gregory J. Kirkner, Ajay Goel, Charles S. Fuchs, Shuji Ogino posted by 1 person jfr
	Distinct genomic aberrations associated with ERG rearranged prostate cancer. [My Copy] Genes, chromosomes & cancer, Vol. 48, No. 4. (April 2009), pp. 366-380. by Francesca Demichelis, Sunita R. Setlur, Rameen Beroukhim, et al.Sven Perner, Jan O. Korbel, Christopher J. Lafargue, Dorothee Pflueger, Cara Pina, Matthias D. Hofer, Andrea Sboner, Maria A. Svensson, David S. Rickman, Alex Urban, Michael Snyder, Matthew Meyerson, Charles Lee, Mark B. Gerstein, Rainer Kuefer, Mark A. Rubin posted by 1 person jfr
	Interlaboratory and Interplatform Comparison of Microarray Gene Expression Analysis of HepG2 Cells Exposed to Benzo(a)pyrene. [My Copy] Omics : a journal of integrative biology, Vol. 13, No. 2. (April 2009), pp. 115-125. by Sarah L. Hockley, Karen Mathijs, Yvonne C. Staal, et al.Daniel Brewer, Ian Giddings, Joost H. van Delft, David H. Phillips posted by 1 person jfr
	A Two-Stage Feature Selection Method for Gene Expression Data. [My Copy] Omics : a journal of integrative biology (30 January 2009) by Li-Yeh Y. Chuang, Chao-Hsuan H. Ke, Hsueh-Wei W. Chang, Cheng-Hong H. Yang posted by 1 person jfr
	Heterogeneity and power in clinical biomarker studies. [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 27, No. 9. (20 March 2009), pp. 1517-1521. by Melania Pintilie, Vladimir Iakovlev, Anthony Fyles, David Hedley, Michael Milosevic, Richard P. Hill posted by 1 person jfr
	New gene selection method for multiclass tumor classification by class centroid. [My Copy] Journal of biomedical informatics, Vol. 42, No. 1. (February 2009), pp. 59-65. by Qi Shen, Wei-min M. Shi, Wei Kong posted by 1 person jfr
	Basal-like breast carcinoma: from expression profiling to routine practice. [My Copy] Archives of pathology & laboratory medicine, Vol. 133, No. 6. (June 2009), pp. 860-868. by Emad Rakha, Jorge S. Reis-Filho posted by 1 person jfr
	Integrated genomic profiling of endometrial carcinoma associates aggressive tumors with indicators of PI3 kinase activation. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 12. (24 March 2009), pp. 4834-4839. by H. B. Salvesen, S. L. Carter, M. Mannelqvist, et al.A. Dutt, G. Getz, I. M. Stefansson, M. B. Raeder, M. L. Sos, I. B. Engelsen, J. Trovik, E. Wik, H. Greulich, T. H. Bø, I. Jonassen, R. K. Thomas, T. Zander, L. A. Garraway, A. M. Oyan, W. R. Sellers, K. H. Kalland, M. Meyerson, L. A. Akslen, R. Beroukhim posted by 1 person jfr
	American Society of Clinical Oncology provisional clinical opinion: testing for KRAS gene mutations in patients with metastatic colorectal carcinoma to predict response to anti-epidermal growth factor receptor monoclonal antibody therapy. [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 27, No. 12. (20 April 2009), pp. 2091-2096. by Carmen J. Allegra, J. Milburn Jessup, Mark R. Somerfield, et al.Stanley R. Hamilton, Elizabeth H. Hammond, Daniel F. Hayes, Pamela K. McAllister, Roscoe F. Morton, Richard L. Schilsky posted by 2 people jfr brainsman2000
	Copy number abnormalities, MYC activity, and the genetic fingerprint of normal B cells mechanistically define the microRNA profile of diffuse large B-cell lymphoma. [My Copy] Blood, Vol. 113, No. 26. (25 June 2009), pp. 6681-6690. by Cheng Li, Sang-Woo W. Kim, Deepak Rai, et al.Aswani R. Bolla, Siddharth Adhvaryu, Marsha C. Kinney, Ryan S. Robetorye, Ricardo C. Aguiar posted by 2 people microRNA jfr
	A dynamic network approach for the study of human phenotypes [My Copy] (22 Sep 2009) by Cesar A. Hidalgo, Nicholas Blumm, Albert-Laszlo Barabasi, Nicholas Christakis posted by 4 people jfr pak apocapoc marinari
	Cross-Study Projections of Genomic Biomarkers: An Evaluation in Cancer Genomics [My Copy] PLoS ONE, Vol. 4, No. 2. (19 February 2009), e4523. by Joseph E. Lucas, Carlos M. Carvalho, Julia L. Chen, Jen-Tsan Chi, Mike West posted by 5 people zufar jfr frohike jmstat bertelsen
	The miR-106b-25 polycistron, activated by genomic amplification, functions as an oncogene by suppressing p21 and Bim. [My Copy] Gastroenterology, Vol. 136, No. 5. (May 2009), pp. 1689-1700. by T. Kan, F. Sato, T. Ito, et al.N. Matsumura, S. David, Y. Cheng, R. Agarwal, B. C. Paun, Z. Jin, A. V. Olaru, F. M. Selaru, J. P. Hamilton, J. Yang, J. M. Abraham, Y. Mori, S. J. Meltzer posted by 2 people microRNA jfr
	Supervised risk predictor of breast cancer based on intrinsic subtypes. [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 27, No. 8. (10 March 2009), pp. 1160-1167. by Joel S. Parker, Michael Mullins, Maggie C. Cheang, et al.Samuel Leung, David Voduc, Tammi Vickery, Sherri Davies, Christiane Fauron, Xiaping He, Zhiyuan Hu, John F. Quackenbush, Inge J. Stijleman, Juan Palazzo, J. S. Marron, Andrew B. Nobel, Elaine Mardis, Torsten O. Nielsen, Matthew J. Ellis, Charles M. Perou, Philip S. Bernard posted by 3 people misonneh ptrobajo jfr
	Introducing molecular subtyping of breast cancer into the clinic? [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 27, No. 8. (10 March 2009), pp. 1153-1154. by Therese Sørlie posted by 2 people jfr lrust
	Gene expression signatures for colorectal cancer microsatellite status and HNPCC. [My Copy] British journal of cancer, Vol. 92, No. 12. (20 June 2005), pp. 2240-2248. by M. Kruhøffer, J. L. Jensen, P. Laiho, et al.L. Dyrskjøt, R. Salovaara, D. Arango, K. Birkenkamp-Demtroder, F. B. Sørensen, L. L. Christensen, L. Buhl, J. P. Mecklin, H. Järvinen, T. Thykjaer, F. P. Wikman, F. Bech-Knudsen, M. Juhola, N. N. Nupponen, S. Laurberg, C. L. Andersen, L. A. Aaltonen, T. F. Ørntoft posted by 1 person jfr
	Predictive signatures for chemotherapy sensitivity in breast cancer: are they ready for use in the clinic? [My Copy] European journal of cancer (Oxford, England : 1990), Vol. 45, No. 10. (July 2009), pp. 1733-1743. by Hervé Bonnefoi, Craig Underhill, Richard Iggo, David Cameron posted by 1 person jfr
	Epigenetic-genetic interactions in the APC/WNT, RAS/RAF, and P53 pathways in colorectal carcinoma. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 9. (1 May 2008), pp. 2560-2569. by Y. Suehiro, C. W. Wong, L. R. Chirieac, et al.Y. Kondo, L. Shen, C. R. Webb, Y. W. Chan, A. S. Chan, T. L. Chan, T. T. Wu, A. Rashid, Y. Hamanaka, Y. Hinoda, R. L. Shannon, X. Wang, J. Morris, J. P. Issa, S. T. Yuen, S. Y. Leung, S. R. Hamilton posted by 1 person jfr
	An integrative genomic and proteomic analysis of PIK3CA, PTEN, and AKT mutations in breast cancer. [My Copy] Cancer research, Vol. 68, No. 15. (1 August 2008), pp. 6084-6091. by Katherine Stemke-Hale, Ana Maria M. Gonzalez-Angulo, Ana Lluch, et al.Richard M. Neve, Wen-Lin L. Kuo, Michael Davies, Mark Carey, Zhi Hu, Yinghui Guan, Aysegul Sahin, W. Fraser Symmans, Lajos Pusztai, Laura K. Nolden, Hugo Horlings, Katrien Berns, Mien-Chie C. Hung, Marc J. van de Vijver, Vicente Valero, Joe W. Gray, René Bernards, Gordon B. Mills, Bryan T. Hennessy posted by 1 person jfr
	An integrated method for cancer classification and rule extraction from microarray data. [My Copy] Journal of biomedical science, Vol. 16 (2009) by L. T. Huang posted by 2 people Bioinformatics jfr
	Personalizing medicine: a systems biology perspective. [My Copy] Molecular systems biology, Vol. 5 (17 March 2009) by Thomas S. Deisboeck posted by 3 people jfr phoenixzxl allysonlister
	Molecular characterization of breast cancer with high-resolution oligonucleotide comparative genomic hybridization array. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 15, No. 2. (15 January 2009), pp. 441-451. by F. Andre, B. Job, P. Dessen, et al.A. Tordai, S. Michiels, C. Liedtke, C. Richon, K. Yan, B. Wang, G. Vassal, S. Delaloge, G. N. Hortobagyi, W. F. Symmans, V. Lazar, L. Pusztai posted by 1 person jfr
	Gradient lasso for Cox proportional hazards model [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1775-1781. by Insuk Sohn, Jinseog Kim, Sin-Ho Jung, Changyi Park posted by 4 people jfr rdiaz reconnie neils
	Caching and Distributing Statistical Analyses in R [My Copy] Journal of Statistical Software, Vol. 26, No. 7. (July 2008), pp. 1-24. by Roger Peng posted by 1 person jfr
	Daily clinical practice of fresh tumour tissue freezing and gene expression profiling; logistics pilot study preceding the MINDACT trial. [My Copy] European journal of cancer (Oxford, England : 1990), Vol. 45, No. 7. (May 2009), pp. 1201-1208. by S. Mook, H. Bonnefoi, G. Pruneri, et al.D. Larsimont, J. Jaskiewicz, M. D. Sabadell, G. Macgrogan, L. J. Van't Veer, F. Cardoso, E. J. Rutgers posted by 1 person jfr
	Reduced expression of a gene proliferation signature is associated with enhanced malignancy in colon cancer. [My Copy] British journal of cancer, Vol. 99, No. 6. (16 September 2008), pp. 966-973. by A. Anjomshoaa, Y. H. Lin, M. A. Black, et al.J. L. McCall, B. Humar, S. Song, R. Fukuzawa, H. S. Yoon, B. Holzmann, J. Friederichs, A. van Rij, M. Thompson-Fawcett, A. E. Reeve posted by 1 person jfr
	Distributed Reproducible Research Using Cached Computations [My Copy] Computing in Science and Engineering, Vol. 11, No. 1. (2009), pp. 28-34. by Roger D. Peng, Sandrah P. Eckel posted by 1 person jfr
	Knowledge driven decomposition of tumor expression profiles [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 1. (2009), S20. by Martin van Vliet, Lodewyk Wessels, Marcel Reinders posted by 3 people zufar Bioinformatics jfr
	The apoptotic machinery as a biological complex system: analysis of its omics and evolution, identification of candidate genes for fourteen major types of cancer, and experimental validation in CML and neuroblastoma [My Copy] BMC Medical Genomics, Vol. 2, No. 1. (2009), 20. by Cinzia Di Pietro, Marco Ragusa, Davide Barbagallo, et al.Laura Duro, Maria Guglielmino, Alessandra Majorana, Rosario Angelica, Marina Scalia, Luisa Statello, Loredana Salito, Luisa Tomasello, Salvo Pernagallo, Salvo Valenti, Vito D'Agostino, Patrizio Triberio, Igor Tandurella, Giuseppe Palumbo, Piera La Cava, Viviana Cafiso, Taschia Bertuccio, Maria Santagati, Giovanni L. Destri, Salvatore Lanzafame, Francesco Di Raimondo, Stefania Stefani, Bud Mishra, Michele Purrello posted by 2 people jfr shikin
	A voting approach to identify a small number of highly predictive genes using multiple classifiers. [My Copy] BMC bioinformatics, Vol. 10 Suppl 1 (2009) by M. R. Hassan, M. M. Hossain, J. Bailey, G. Macintyre, J. W. Ho, K. Ramamohanarao posted by 1 person jfr
	HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models. [My Copy] BMC bioinformatics, Vol. 10 Suppl 1 (2009) by S. Kadri, V. Hinman, P. V. Benos posted by 2 people microRNA jfr
	Global Associations between Copy Number and Transcript mRNA Microarray Data: An Empirical Study. [My Copy] Cancer informatics, Vol. 6 (2008), pp. 17-23. by W. Gu, H. Choi, D. Ghosh posted by 1 person jfr
	Gene expression patterns in formalin-fixed, paraffin-embedded core biopsies predict docetaxel chemosensitivity in breast cancer patients. [My Copy] Breast cancer research and treatment, Vol. 108, No. 2. (March 2008), pp. 233-240. by J. C. Chang, A. Makris, M. C. Gutierrez, et al.S. G. Hilsenbeck, J. R. Hackett, J. Jeong, M. L. Liu, J. Baker, K. Clark-Langone, F. L. Baehner, K. Sexton, S. Mohsin, T. Gray, L. Alvarez, G. C. Chamness, C. K. Osborne, S. Shak posted by 1 person jfr
	Mistakes in validating the accuracy of a prediction classifier in high-dimensional but small-sample microarray data. [My Copy] Statistical methods in medical research, Vol. 17, No. 6. (1 December 2008), pp. 635-642. by S. Lee posted by 2 people jfr surajitray
	Evaluation of microarray preprocessing algorithms based on concordance with RT-PCR in clinical samples. [My Copy] PloS one, Vol. 4, No. 5. (21 May 2009), e5645. by Balazs Gyorffy, Bela Molnar, Hermann Lage, Zoltan Szallasi, Aron C. Eklund posted by 3 people jfr rdiaz bertelsen
	Meta-analysis of colorectal cancer gene expression profiling studies identifies consistently reported candidate biomarkers. [My Copy] Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, Vol. 17, No. 3. (March 2008), pp. 543-552. by S. K. Chan, O. L. Griffith, I. T. Tai, S. J. Jones posted by 1 person jfr
	Automated high-dimensional flow cytometric data analysis [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 21. (26 May 2009), pp. 8519-8524. by Saumyadipta Pyne, Xinli Hu, Kui Wang, et al.Elizabeth Rossin, Tsung-I Lin, Lisa M. Maier, Clare Baecher-Allan, Geoffrey J. Mclachlan, Pablo Tamayo, David A. Hafler, Philip L. De Jager, Jill P. Mesirov posted by 6 people jfr rdiaz guhjy vplagnol aheilbut surajitray
	The clinical applications of a systems approach. [My Copy] PLoS medicine, Vol. 3, No. 7. (July 2006) by A. C. Ahn, M. Tewari, C. S. Poon, R. S. Phillips posted by 2 people Scis0000002 jfr
	Comparison of statistical data models for identifying differentially expressed genes using a generalized likelihood ratio test. [My Copy] Gene regulation and systems biology :, Vol. 2 (2008), pp. 125-139. by Kok-Yong Y. Seng, Robb W. Glenny, David K. Madtes, Mary E. Spilker, Paolo Vicini, Sina A. Gharib posted by 1 person jfr
	GEMS (Gene Expression MetaSignatures), a Web resource for querying meta-analysis of expression microarray datasets: 17beta-estradiol in MCF-7 cells. [My Copy] Cancer research, Vol. 69, No. 1. (1 January 2009), pp. 23-26. by Scott A. Ochsner, David L. Steffen, Susan G. Hilsenbeck, Edward S. Chen, Christopher Watkins, Neil J. McKenna posted by 3 people tonamswish daforerog jfr
	Gene expression profiling: canonical molecular changes and clinicopathological features in sporadic colorectal cancers. [My Copy] World journal of gastroenterology : WJG, Vol. 14, No. 43. (21 November 2008), pp. 6662-6672. by J. C. Kim, S. Y. Kim, S. A. Roh, et al.D. H. Cho, D. D. Kim, J. H. Kim, Y. S. Kim posted by 1 person jfr
	Gene expression signature for recurrence in stage III colorectal cancers. [My Copy] Cancer, Vol. 115, No. 2. (15 January 2009), pp. 283-292. by T. Watanabe, T. Kobunai, E. Sakamoto, et al.Y. Yamamoto, T. Konishi, A. Horiuchi, R. Shimada, T. Oka, H. Nagawa posted by 1 person jfr
	Network-based inference of cancer progression from microarray data. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, Vol. 6, No. 2. (n 2009), pp. 200-212. by Y. Park, S. Shackney, R. Schwartz posted by 1 person jfr
	Model-based clustering of array CGH data [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i30-38. by Sohrab P. Shah, K-John Cheung, Nathalie A. Johnson, et al.Guillaume Alain, Randy D. Gascoyne, Douglas E. Horsman, Raymond T. Ng, Kevin P. Murphy posted by 6 people jfr jonilaserson dolchan rdiaz kdpreter nuin
	A global meta-analysis of microarray expression data to predict unknown gene functions and estimate the literature-data divide. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 13. (1 July 2009), pp. 1694-1701. by Jonathan D. Wren posted by 13 people jfr Orengo Group Journal Picks jperkins fenghezi guhjy renatomilani VGreiff mitko Bioinformatics dswan TRHvidsten daforerog shikin
	The colorectal cancer risk at 18q21 is caused by a novel variant altering SMAD7 expression [My Copy] Genome Research, Vol. 19, No. 6. (June 2009), pp. 987-993. by Alan M. Pittman, Silvia Naranjo, Emily Webb, et al.Peter Broderick, Esther H. Lips, Tom van Wezel, Hans Morreau, Kate Sullivan, Sarah Fielding, Philip Twiss, Jayaram Vijayakrishnan, Fernando Casares, Mobshra Qureshi, José L. Gómez-Skarmeta, Richard S. Houlston posted by 2 people jfr neils
	Predicting microRNA targets and functions: traps for the unwary. [My Copy] Nature methods, Vol. 6, No. 6. (June 2009), pp. 397-398. by William Ritchie, Stephane Flamant, John E. Rasko posted by 7 people microRNA jfr gdb giovenko guhjy tibbitts daforerog
	Inter-observer reproducibility of HER2 immunohistochemical assessment and concordance with fluorescent in situ hybridization (FISH): pathologist assessment compared to quantitative image analysis. [My Copy] BMC cancer, Vol. 9 (29 May 2009), 165. by Gulisa Turashvili, Samuel Leung, Dmitry Turbin, et al.Kelli Montgomery, Blake Gilks, Rob West, Melinda Carrier, David Huntsman, Samuel Aparicio posted by 2 people jfr gturashvili
	MicroRNAs: Novel regulators in the hallmarks of human cancer [My Copy] Cancer Letters (22 May 2009) by Kai Ruan, Xiaoguang Fang, Gaoliang Ouyang posted by 4 people zufar microRNA jfr guhjy
	Getting started in computational mass spectrometry-based proteomics. [My Copy] PLoS computational biology, Vol. 5, No. 5. (29 May 2009), e1000366. by Olga Vitek posted by 9 people jfr eliasman ptrobajo nuin kiekyon sjcockell renatomilani danmaclean fgibson
	Probabilistic retrieval and visualization of biologically relevant microarray experiments [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i145-153. by Jose Caldas, Nils Gehlenborg, Ali Faisal, Alvis Brazma, Samuel Kaski posted by 7 people jfr ngehlenborg greg ptrobajo bertelsen guhjy shikin
	Constrained mixture estimation for analysis and robust classification of clinical time series [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i6-14. by Ivan G. Costa, Alexander Schonhuth, Christoph Hafemeister, Alexander Schliep posted by 3 people jfr rdiaz sotacam
	A Classifier-based approach to identify genetic similarities between diseases [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i21-29. by Marc A. Schaub, Irene M. Kaplow, Marina Sirota, Chuong B. Do, Atul J. Butte, Serafim Batzoglou posted by 5 people jfr zufar rdiaz ddunbar djkt
	From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i63-68. by Pan Du, Gang Feng, Jared Flatow, et al.Jie Song, Michelle Holko, Warren A. Kibbe, Simon M. Lin posted by 11 people bertelsen jfr kaarsinogen ruichu guhjy baker-group sobolevnrm mikel_egana allysonlister fgibson dullhunk
	Fewer permutations, more accurate P-values [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i161-168. by Theo A. Knijnenburg, Lodewyk F. A. Wessels, Marcel J. T. Reinders, Ilya Shmulevich posted by 12 people heliopais jfr rdiaz Ayest farhat Journal picks AlexBateman bmajoros idonaldson TRHvidsten djkt sameersoi
	MicroRNA identification in plasma and serum: a new tool to diagnose and monitor diseases [My Copy] Expert Opinion on Biological Therapy, Vol. 9, No. 6., pp. 703-711. by Maria Angelica A. Cortez, George Adrian A. Calin posted by 2 people microRNA jfr
	MicroRNA-92a controls angiogenesis and functional recovery of ischemic tissues in mice. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5935. (26 June 2009), pp. 1710-1713. by A. Bonauer, G. Carmona, M. Iwasaki, et al.M. Mione, M. Koyanagi, A. Fischer, J. Burchfield, H. Fox, C. Doebele, K. Ohtani, E. Chavakis, M. Potente, M. Tjwa, C. Urbich, A. M. Zeiher, S. Dimmeler posted by 9 people tonamswish microRNA jfr guhjy galka8_diploma Journal picks ppgardne lymxz valeriehilgers
	Data driven derivation of cutoffs from a pool of 3,030 Affymetrix arrays to stratify distinct clinical types of breast cancer. [My Copy] Breast cancer research and treatment (20 May 2009) by Thomas Karn, Dirk Metzler, Eugen Ruckhäberle, et al.Lars Hanker, Regine Gätje, Christine Solbach, Andre Ahr, Marcus Schmidt, Uwe Holtrich, Manfred Kaufmann, Achim Rody posted by 1 person jfr
	Cloud computing [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), 1475. by Alex Bateman, Matt Wood posted by 28 people jfr rdiaz fgibson walshtp Jingbo aan pekrau tnhh niallhaslam bertelsen apaydin structural_bioinformatics McCammon barry kiekyon reyez baker-group sobolevnrm cymacs druvus acesforum thegoose mikel_egana dullhunk Bioinformatics dswan jmeppley bmajoros
	A HUPO test sample study reveals common problems in mass spectrometry-based proteomics. [My Copy] Nature methods, Vol. 6, No. 6. (17 June 2009), pp. 423-430. by Alexander W. Bell, Eric W. Deutsch, Catherine E. Au, et al.Robert E. Kearney, Ron Beavis, Salvatore Sechi, Tommy Nilsson, John J. Bergeron, HUPO Test Sample Working Group posted by 5 people jfr guhjy fenghezi leliavski brianb
	Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1715-1721. by Hyungwon Choi, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin posted by 14 people jfr tonamswish rdiaz fpattyn Journal picks jcbarret guhjy hendrik85 inesdesantiago nklee polivares ewilban1 idonaldson humburg
	Modeling and managing experimental data using FuGE. [My Copy] Omics : a journal of integrative biology, Vol. 13, No. 3. (14 June 2009), pp. 239-251. by Andrew R. Jones, Allyson L. Lister, Leandro Hermida, et al.Peter Wilkinson, Martin Eisenacher, Khalid Belhajjame, Frank Gibson, Phil Lord, Matthew Pocock, Heiko Rosenfelder, Javier Santoyo-Lopez, Anil Wipat, Norman W. Paton posted by 8 people jfr mtaschuk lptolik joergkurtwegner CameronNeylon allysonlister fgibson dullhunk
	Genome-wide massively parallel sequencing of formaldehyde fixed-paraffin embedded (FFPE) tumor tissues for copy-number- and mutation-analysis. [My Copy] PloS one, Vol. 4, No. 5. (2009) by Michal R. Schweiger, Martin Kerick, Bernd Timmermann, et al.Marcus W. Albrecht, Tatjana Borodina, Dmitri Parkhomchuk, Kurt Zatloukal, Hans Lehrach posted by 2 people jfr reyez
	SHRiMP: Accurate Mapping of Short Color-space Reads [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000386. by Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno posted by 27 people heliopais jfr cthachuk hzoltan bozdagd ilanc burak guhjy djkt trfield n00c natstreet adijr druvus Bioinformatics - CRUK Stew farhat humburg kshameer operon Mycology stajich GeeSharpMinor Journal picks AlexBateman Bioinformatics barry
	A genomic strategy to elucidate modules of oncogenic pathway signaling networks. [My Copy] Molecular cell, Vol. 34, No. 1. (10 April 2009), pp. 104-114. by Jeffrey T. Chang, Carlos Carvalho, Seiichi Mori, et al.Andrea H. Bild, Michael L. Gatza, Quanli Wang, Joseph E. Lucas, Anil Potti, Phillip G. Febbo, Mike West, Joseph R. Nevins posted by 10 people jfr bertelsen jmstat guhjy Journal picks mspivako renatomilani fenghezi shikin roys
	Genetic Alterations and Oncogenic Pathways Associated with Breast Cancer Subtypes [My Copy] Molecular Cancer Research, Vol. 7, No. 4. (April 2009), pp. 511-522. by Xiaolan Hu, Howard M. Stern, Lin Ge, et al.Carol O'Brien, Lauren Haydu, Cynthia D. Honchell, Peter M. Haverty, Brock A. Peters, Thomas D. Wu, Lukas C. Amler, John Chant, David Stokoe, Mark R. Lackner, Guy Cavet posted by 3 people jfr rdiaz Zephyrus
	DIANA-mirPath: Integrating human and mouse microRNAs in pathways. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 15. (1 August 2009), pp. 1991-1993. by G. L. Papadopoulos, P. Alexiou, M. Maragkakis, M. Reczko, A. G. Hatzigeorgiou posted by 12 people microRNA jfr ealloza megraw Bioinformatics - CRUK Stew Bioinformatics dswan daforerog tmmurali guhjy pengchy
	Intra-Platform Repeatability and Inter-Platform Comparability of MicroRNA Microarray Technology [My Copy] PLoS ONE, Vol. 4, No. 5. (14 May 2009), e5540. by Fumiaki Sato, Soken Tsuchiya, Kazuya Terasawa, Gozoh Tsujimoto posted by 6 people microRNA jfr fishtank rdiaz guhjy daforerog
	A gene expression predictor of response to EGFR-targeted therapy stratifies progression-free survival to cetuximab in KRAS wild-type metastatic colorectal cancer. [My Copy] BMC cancer, Vol. 9, No. 1. (13 May 2009), 145. by Justin M. Balko, Esther P. Black posted by 2 people jfr frohike
	MicroRNA signatures predict oestrogen receptor, progesterone receptor and HER2/neu receptor status in breast cancer. [My Copy] Breast cancer research : BCR, Vol. 11, No. 3. (11 May 2009), R27. by Aoife J. Lowery, Nicola Miller, Amanda Devaney, et al.Roisin E. McNeill, Pamela A. Davoren, Christophe Lemetre, Vladimir Benes, Sabine Schmidt, Jonathon Blake, Graham Ball, Michael J. Kerin posted by 4 people tonamswish microRNA jfr giovenko
	Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 218. by Yu P. Wang, Kuo B. Li posted by 15 people frohike microRNA jfr guhjy giovenko marti lwaldron daforerog samgj shikin ealloza dswan natstreet Bioinformatics - CRUK Stew
	Properties of balanced permutations. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 4. (April 2009), pp. 625-638. by L. K. Southworth, S. K. Kim, A. B. Owen posted by 2 people jfr pbellec
	MIST: Maximum Information Spanning Trees for dimension reduction of biological data sets [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1165-1172. by Bracken M. King, Bruce Tidor posted by 2 people jfr aheilbut
	Prediction of qualitative outcome of oligonucleotide microarray hybridization by measurement of RNA integrity using the 2100 Bioanalyzer capillary electrophoresis system. [My Copy] Annals of hematology, Vol. 88, No. 12. (8 December 2009), pp. 1177-1183. by Philipp Kiewe, Saskia Gueller, Martina Komor, Andrea Stroux, Eckhard Thiel, Wolf-Karsten K. Hofmann posted by 2 people jfr guhjy