|
Multiscale Modeling & Simulation, Vol. 6, No. 4. (2008), pp. 1146-1168.
| |
|
Physical Review Letters, Vol. 94, No. 12. (2005)
| |
|
Biophysical journal, Vol. 82, No. 5. (May 2002), pp. 2326-2332.
by A. H. Elcock
posted by
3 people
ras
ocs
Martin8223
| |
|
Bioinformatics (Oxford, England), Vol. 23, No. 15. (1 August 2007), pp. 1969-1977.
| |
|
Computational Biology and Chemistry, Vol. 28, No. 3. (July 2004), pp. 165-178.
by T. Turner
| |
|
J Chem Phys, Vol. 123, No. 23. (15 December 2005)
| |
|
Science, Vol. 322, No. 5898. (3 October 2008), pp. 104-110.
by Haiyuan Yu, Pascal Braun, Muhammed A. Yildirim, et al.Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amelie Dricot, Alexei Vazquez, Ryan R. Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E. Hudson, Juyong Park, Xiaofeng Xin, Michael E. Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P. Roth, Albert-Laszlo Barabasi, Jan Tavernier, David E. Hill, Marc Vidal
| |
|
Science, Vol. 320, No. 5882. (13 June 2008), pp. 1465-1470.
by Kirill Tarassov, Vincent Messier, Christian R. Landry, et al.Stevo Radinovic, Mercedes M. Molina, Igor Shames, Yelena Malitskaya, Jackie Vogel, Howard Bussey, Stephen W. Michnick
posted by
9 people
semin
roys
ocs
carlk
thomaskelder
Petersarkies
renatomilani
zwang
balicea
| |
|
Programming Languages and Systems (2007), pp. 411-425.
| |
|
Computational Methods in Systems Biology (2007), pp. 184-199.
| |
|
: Computational Methods in Systems Biology (2005), pp. 20-33.
posted by
4 people
roland_ewald
mattis23
dIEMoSIRIS
MoSi-Rostock
| |
|
Theor. Comput. Sci., Vol. 325, No. 1. (September 2004), pp. 141-167.
posted by
4 people
roland_ewald
mattis23
dIEMoSIRIS
MoSi-Rostock
| |
|
Proceedings of the National Academy of Sciences, Vol. 106, No. 32. (11 August 2009), pp. 13175-13179.
| |
|
Bioinformatics, Vol. 17, No. 11. (1 November 2001), pp. 1027-1034.
| |
|
Nucl. Acids Res., Vol. 32, No. suppl_1. (1 January 2004), pp. D174-181.
| |
|
Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 217-232.
| |
|
Bioinformatics, Vol. 24, No. 23. (1 December 2008), pp. 2780-2781.
| |
|
Nucleic acids research, Vol. 37, No. Database issue. (4 January 2009), gkn659.
| |
|
Neuropsychopharmacology, Vol. aop, No. current.
posted by
4 people
semin
medic0747
calvin
higueruelo
| |
|
Journal of bioinformatics and computational biology, Vol. 5, No. 6. (December 2007), pp. 1297-1318.
by C. L. Worth, G. R. Bickerton, A. Schreyer, et al.J. R. Forman, T. M. Cheng, S. Lee, S. Gong, D. F. Burke, T. L. Blundell
posted by
3 people
semin
higueruelo
bicko
| |
|
Nucleic acids research, Vol. 36, No. Database issue. (January 2008)
posted by
8 people
Thaverkamp
coela
AaronDarling
semin
diamantis
guhjy
jmeppley
stsaft
| |
|
Nucl. Acids Res., Vol. 36, No. suppl_1. (11 January 2008), pp. D190-195.
| |
|
Nature, Vol. 450, No. 7172. (12 December 2007), pp. 1001-1009.
posted by
9 people
semin
allmensch
ramensky
cjeans
chgjb
phoenixzxl
higueruelo
bicko
guhjy
| |
|
Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3247-3248.
posted by
4 people
semin
guhjy
tmmurali
boris_aguilar
| |
|
Nucleic acids research, Vol. 36, No. Database issue. (13 January 2008)
by P. Flicek, B. L. Aken, K. Beal, et al.B. Ballester, M. Caccamo, Y. Chen, L. Clarke, G. Coates, F. Cunningham, T. Cutts, T. Down, S. C. Dyer, T. Eyre, S. Fitzgerald, J. Fernandez-Banet, S. Gräf, S. Haider, M. Hammond, R. Holland, K. L. Howe, K. Howe, N. Johnson, A. Jenkinson, A. Kähäri, D. Keefe, F. Kokocinski, E. Kulesha, D. Lawson, I. Longden, K. Megy, P. Meidl, B. Overduin, A. Parker, B. Pritchard, A. Prlic, S. Rice, D. Rios, M. Schuster, I. Sealy, G. Slater, D. Smedley, G. Spudich, S. Trevanion, A. J. Vilella, J. Vogel, S. White, M. Wood, E. Birney, T. Cox, V. Curwen, R. Durbin, X. M. Fernandez-Suarez, J. Herrero, T. J. Hubbard, A. Kasprzyk, G. Proctor, J. Smith, A. Ureta-Vidal, S. Searle
| |
|
Nucleic Acids Res, Vol. 29, No. 1. (1 January 2001), pp. 61-65.
posted by
2 people
semin
chad_davis
| |
|
Current Opinion in Microbiology, Vol. 3, No. 3. (1 June 2000), pp. 303-308.
| |
|
Bioinformatics (Oxford, England), Vol. 23, No. 9. (1 May 2007), pp. 1099-1105.
| |
|
Journal of Molecular Biology, Vol. 212, No. 2. (20 March 1990), pp. 403-428.
| |
|
Nucl. Acids Res., Vol. 29, No. 4. (15 February 2001), pp. 943-954.
| |
|
Bioinformatics (11 September 2006)
| |
|
Science, Vol. 303, No. 5666. (26 March 2004), pp. 2026-2029.
| |
|
Bioinformatics, Vol. 19, No. 8. (22 May 2003), pp. 923-929.
posted by
5 people
semin
dyermd
antonkratz
phoenixzxl
carlk
| |
|
Nat Rev Drug Discov, Vol. 1, No. 9. (September 2002), pp. 727-730.
| |
|
Nature Genetics, Vol. 38, No. 3. (24 February 2006), pp. 285-293.
by T. K. B. Gandhi, Jun Zhong, Suresh Mathivanan, et al.L. Karthick, K. N. Chandrika, Sujatha S. Mohan, Salil Sharma, Stefan Pinkert, Shilpa Nagaraju, Balamurugan Periaswamy, Goparani Mishra, Kannabiran Nandakumar, Beiyi Shen, Nandan Deshpande, Rashmi Nayak, Malabika Sarker, Jef D. Boeke, Giovanni Parmigiani, Jörg Schultz, Joel S. Bader, Akhilesh Pandey
| |
|
Nucleic Acids Res, Vol. 29, No. 13. (1 July 2001), pp. 2860-2874.
| |
|
Proc Natl Acad Sci U S A, Vol. 101, No. 4. (27 January 2004), pp. 935-940.
by S. K. Olsen, O. A. Ibrahimi, A. Raucci, et al.F. Zhang, A. V. Eliseenkova, A. Yayon, C. Basilico, R. J. Linhardt, J. Schlessinger, M. Mohammadi
posted by
2 people
semin
lpfernandes
| |
|
Genome Research, Vol. 13, No. 10. (October 2003), pp. 2363-2371.
by Suraj Peri, J. Daniel Navarro, Ramars Amanchy, et al.Troels Z. Kristiansen, Chandra K. Jonnalagadda, Vineeth Surendranath, Vidya Niranjan, Babylakshmi Muthusamy, T. K. B. Gandhi, Mads Gronborg, Nieves Ibarrola, Nandan Deshpande, K. Shanker, H. N. Shivashankar, B. P. Rashmi, M. A. Ramya, Zhixing Zhao, K. N. Chandrika, N. Padma, H. C. Harsha, A. J. Yatish, M. P. Kavitha, Minal Menezes, Dipanwita R. Choudhury, Shubha Suresh, Neelanjana Ghosh, R. Saravana, Sreenath Chandran, Subhalakshmi Krishna, Mary Joy, Sanjeev K. Anand, V. Madavan, Ansamma Joseph, Guang W. Wong, William P. Schiemann, Stefan N. Constantinescu, Lily Huang, Roya Khosravi-Far, Hanno Steen, Muneesh Tewari, Saghi Ghaffari, Gerard C. Blobe, Chi V. Dang, Joe G. N. Garcia, Jonathan Pevsner, Ole N. Jensen, Peter Roepstorff, Krishna S. Deshpande, Arul M. Chinnaiyan, Ada Hamosh, Aravinda Chakravarti, Akhilesh Pandey
posted by
8 people
marti
semin
jeremymiller
aelef
miguel
maryee
bundschu
generif_paper
| |
|
Journal of molecular biology, Vol. 247, No. 4. (7 April 1995), pp. 536-540.
| |
|
J Mol Biol, Vol. 310, No. 1. (29 June 2001), pp. 243-257.
| |
|
Nature, Vol. 415, No. 6868. (10 January 2002), pp. 180-183.
by Yuen Ho, Albrecht Gruhler, Adrian Heilbut, et al.Gary D. Bader, Lynda Moore, Sally-Lin L. Adams, Anna Millar, Paul Taylor, Keiryn Bennett, Kelly Boutilier, Lingyun Yang, Cheryl Wolting, Ian Donaldson, Søren Schandorff, Juanita Shewnarane, Mai Vo, Joanne Taggart, Marilyn Goudreault, Brenda Muskat, Cris Alfarano, Danielle Dewar, Zhen Lin, Katerina Michalickova, Andrew R. Willems, Holly Sassi, Peter A. Nielsen, Karina J. Rasmussen, Jens R. Andersen, Lene E. Johansen, Lykke H. Hansen, Hans Jespersen, Alexandre Podtelejnikov, Eva Nielsen, Janne Crawford, Vibeke Poulsen, Birgitte D. Sørensen, Jesper Matthiesen, Ronald C. Hendrickson, Frank Gleeson, Tony Pawson, Michael F. Moran, Daniel Durocher, Matthias Mann, Christopher W. Hogue, Daniel Figeys, Mike Tyers
| |
|
Science (New York, N.Y.), Vol. 303, No. 5657. (23 January 2004), pp. 540-543.
by S. Li, C. M. Armstrong, N. Bertin, et al.H. Ge, S. Milstein, M. Boxem, P. O. Vidalain, J. D. Han, A. Chesneau, T. Hao, D. S. Goldberg, N. Li, M. Martinez, J. F. Rual, P. Lamesch, L. Xu, M. Tewari, S. L. Wong, L. V. Zhang, G. F. Berriz, L. Jacotot, P. Vaglio, J. Reboul, T. Hirozane-Kishikawa, Q. Li, H. W. Gabel, A. Elewa, B. Baumgartner, D. J. Rose, H. Yu, S. Bosak, R. Sequerra, A. Fraser, S. E. Mango, W. M. Saxton, S. Strome, S. Van Den Heuvel, F. Piano, J. Vandenhaute, C. Sardet, M. Gerstein, L. Doucette-Stamm, K. C. Gunsalus, J. W. Harper, M. E. Cusick, F. P. Roth, D. E. Hill, M. Vidal
| |
|
Protein Sci, Vol. 7, No. 11. (November 1998), pp. 2469-2471.
posted by
9 people
semin
viktor21614
bicko
chrn
massivemayhem
medic0747
cdeane
sebk
newton1234
| |
|
Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3234-3240.
| |
|
Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242.
by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne
posted by
50 people
krapnik
barmak7282
viktor21614
badi
ucbcjbm
TLVincent
maria_hauser
Martin8223
tomjad
Diego_Prada
flbarroso
Taguan
oceanwind
dsmueller
fisherp
semin
MarcoAlvarez
kumar_physics
References for 3DSim paper
LamBras
RamuAnandakrishnan
nlapalu
reyez
nigham
lillekatt
thaliana
dimka
kuhn
jwm
vavi
bicko
itmeson
dgront
caporaso
condon
aengisch
debatebob
massivemayhem
gisle
girschick
selrac
Radiation_Damage
Stressosome
biomedical-nlp
beta
tji
higueruelo
boris_aguilar
sebk
timg
| |
|
Structure (London, England : 1993), Vol. 5, No. 8. (15 August 1997), pp. 1093-1108.
| |
|
Nat Rev Drug Discov, Vol. 3, No. 4. (April 2004), pp. 301-317.
| |
|
The EMBO journal, Vol. 5, No. 4. (April 1986), pp. 823-826.
by C. Chothia, A. M. Lesk
| |
|
Nature, Vol. 417, No. 6887. (23 May 2002), pp. 399-403.
| |
|
| |
|
Vol. 111, No. 2. (18 October 2002), pp. 241-250.
| |
|
The Journal of investigative dermatology, Vol. 129, No. 7. (July 2009), pp. 1614-1627.
| |
|
Schizophrenia Research, Vol. 38, No. 1. (27 July 1999), pp. 1-6.
by T. Miyaoka
| |
|
Cell, Vol. 103, No. 2. (13 October 2000), pp. 311-320.
by M. Bienz, H. Clevers
| |
|
FEBS Letters, Vol. 457, No. 3. (03 September 1999), pp. 452-454.
| |
|
American Journal of Physics, Vol. 64, No. 10. (1996), pp. 1246-1257.
| |
|
Mol. Cell. Biol., Vol. 26, No. 1. (1 January 2006), pp. 313-323.
| |
|
J. Biol. Chem., Vol. 280, No. 52. (30 December 2005), pp. 43109-43120.
| |
|
J. Biol. Chem., Vol. 280, No. 1. (7 January 2005), pp. 5-8.
| |
|
IEEE Transactions on NanoBioscience, Vol. 3 (2004), pp. 200-207.
| |
|
Nat Rev Genet, Vol. 5, No. 9. (01 September 2004), pp. 691-701.
posted by
2 people
m_j
borisrebolledo
| |
|
Journal of Theoretical Biology, Vol. 218, No. 3. (07 October 2002), pp. 309-321.
| |
|
Nat Biotech, Vol. 26, No. 10. (09 October 2008), pp. 1155-1160.
by Markus J. Herrgard, Neil Swainston, Paul Dobson, et al.Warwick B. Dunn, K. Yalcin Arga, Mikko Arvas, Nils Buthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novere, Peter Li, Wolfram Liebermeister, Monica L. Mo, Ana P. Oliveira, Dina Petranovic, Stephen Pettifer, Evangelos Simeonidis, Kieran Smallbone, Irena Spasie, Dieter Weichart, Roger Brent, David S. Broomhead, Hans V. Westerhoff, Betul Kurdar, Merja Penttila, Edda Klipp, Bernhard O. Palsson, Uwe Sauer, Stephen G. Oliver, Pedro Mendes, Jens Nielsen, Douglas B. Kell
| |
|
Cell Biochemistry and Biophysics, Vol. 11, No. 1. (3 December 1987), pp. 331-344.
by Joel Keizer
| |
|
In Discrete Modelling and Discrete Algorithms in Continuum Mechanics (2001), pp. 217-226.
| |
|
IEEE Trans. Parallel Distrib. Syst., Vol. 4, No. 8. (August 1993), pp. 906-921.
| |
|
Physical review. E, Statistical, nonlinear, and soft matter physics, Vol. 66, No. 5 Pt 1. (November 2002)
by A. R. Kinjo, S. Takada
| |
|
Phys. Rev. E, Vol. 66, No. 3. (September 2002), 031911.
by A. R. Kinjo, S. Takada
| |
|
Europhysics Letters, Vol. 67 (September 2004), pp. 900-906.
| |
|
In PADS '00: Proceedings of the fourteenth workshop on Parallel and distributed simulation (2000), pp. 157-164.
| |
|
In WSC '07: Proceedings of the 39th conference on Winter simulation (2007), pp. 568-576.
| |
|
Comp. Funct. Genomics, Vol. 5, No. 1. (February 2004), pp. 95-99.
| |
|
Biological chemistry, Vol. 387, No. 5. (May 2006), pp. 485-497.
| |
|
Parallel Processing, 2004. ICPP 2004. International Conference on In Parallel Processing, 2004. ICPP 2004. International Conference on (2004), pp. 12-19 vol.1.
| |
|
Biochemistry. Biokhimii͡a, Vol. 69, No. 11. (November 2004), pp. 1239-1251.
| |
|
In SCC '04: Proceedings of the 2004 IEEE International Conference on Services Computing (2004), pp. 613-616.
| |
|
In WSC '07: Proceedings of the 39th conference on Winter simulation (2007), pp. 676-684.
| |
|
In SCSC: Proceedings of the 2007 summer computer simulation conference (2007), pp. 794-801.
| |
|
Journal of Theoretical Biology, Vol. 251, No. 3. (7 April 2008), pp. 421-439.
posted by
1 person
TristanBitardFeildel
| |
|
In Winter Simulation Conference (1999), pp. 548-552.
| |
|
Biophys. J., Vol. 84, No. 3. (1 March 2003), pp. 1606-1615.
| |
|
No. SMLI TR-94-29. (November 1994)
| |
|
Journal of Physics A: Mathematical and General, Vol. 9, No. 9. (1976), pp. 1479-1495.
by M. Doi
| |
|
In HPDC '02: Proceedings of the 11th IEEE International Symposium on High Performance Distributed Computing (2002)
| |
|
Scientific Applications of Grid Computing (2005), pp. 108-119.
| |
|
J. Supercomput., Vol. 42, No. 1. (October 2007), pp. 3-17.
| |
|
In HPDC (2000), pp. 43-50.
| |
|
The Journal of chemical physics, Vol. 126, No. 3. (21 January 2007)
|







