Diego Forero, MD, PhD(c)'s Top Recommendations

These recommendations were last updated about 8 hours ago.

	Widespread changes in protein synthesis induced by microRNAs [My Copy] Nature, Vol. 455, No. 7209. (30 July 2008), pp. 58-63. by Matthias Selbach, Bjorn Schwanhausser, Nadine Thierfelder, Zhuo Fang, Raya Khanin, Nikolaus Rajewsky posted by 29 people dandaman framancuso inesdesantiago lwaldron danaiancu fishtank dswan TRHvidsten pengchy valeriehilgers druvus guhjy martin-novak cajunsushi microRNA heliopais BTS-PT-AS-CS vertikalist jfr caizhiqiang psique megraw neils j_rodriguez erel10 maralena reyez mtagaya gdb
	What would you do if you could sequence everything? [My Copy] Nature Biotechnology, Vol. 26, No. 10. (01 October 2008), pp. 1125-1133. by Avak Kahvejian, John Quackenbush, John F. Thompson posted by 19 people hzoltan seb1 inesdesantiago heliopais stubrown installe Annab jfr Borelli jbhiatt Pascalichouchou bertelsen frohike natstreet druvus reyez alexknight psique GeeSharpMinor
	CloudBurst: highly sensitive read mapping with MapReduce [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1363-1369. by Michael C. Schatz posted by 36 people joshdsullivan cthachuk hzoltan jfr walshtp idonaldson orzenil heliopais dakelley bozdagd agbiotec jandot guhjy n00c cymacs semrich nuin operon AlexBateman fgibson KCL & UCL Bioinformatics rschulz Bioinformatics dswan mitko djkt humburg jmeppley coela vagoskar svenrahmann natstreet brianb Neeperando druvus neils
	Statistical methods of background correction for Illumina BeadArray data. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 751-757. by Yang Xie, Xinlei Wang, Michael Story posted by 10 people shikin jfr ptrobajo welliegirl rdiaz Bioinformatics - CRUK Stew heliopais dswan guhjy
	Identification of differential gene pathways with principal component analysis. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 882-889. by Shuangge Ma, Michael R. Kosorok posted by 11 people jfr kemalpak padosori tonamswish heliopais dswan imina rdiaz VGreiff guhjy druvus
	gcExplorer: interactive exploration of gene clusters. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1089-1090. by Theresa Scharl, Friedrich Leisch posted by 9 people jfr inesdesantiago jmeppley nuin dswan rdiaz guhjy heliopais druvus
	Testing significance relative to a fold-change threshold is a TREAT. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 765-771. by Davis J. McCarthy, Gordon K. Smyth posted by 14 people shikin Bioinformatics jfr VGreiff lwaldron rschulz kmdaily rdiaz heliopais dswan bertelsen guhjy renatomilani paszkows
	LRpath: A logistic regression approach for identifying enriched biological groups in gene expression data [My Copy] Bioinformatics (27 November 2008), btn592. by Maureen A. Sartor, George D. Leikauf, Mario Medvedovic posted by 11 people zufar rdiaz jfr guhjy heliopais VGreiff Bioinformatics dswan Roswell Cancer Crosstalk Zephyrus renatomilani
	Mapping and quantifying mammalian transcriptomes by RNA-Seq. [My Copy] Nature methods, Vol. 5, No. 7. (30 July 2008), pp. 621-628. by Ali Mortazavi, Brian A. Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold posted by 44 people cthachuk hzoltan jwfoley heliopais juokcho aktas debasis bertelsen idonaldson darian stubrown Bioinformatics dswan ewilban1 mtagaya woodson8 burak jonilaserson inesdesantiago ThomasDOtto n00c GustavoG SIMR bioinformatics ghattem vplagnol druvus cfvillalta vmsr poschm dandaman shikin jmcq rschulz lp2 tmcphillips jfr myourshaw megraw GeeSharpMinor caseybrown xingxu guhjy shurjo gdb
	The microRNA.org resource: targets and expression [My Copy] Nucl. Acids Res., Vol. 36, No. suppl_1. (11 January 2008), pp. D149-153. by Doron Betel, Manda Wilson, Aaron Gabow, Debora S. Marks, Chris Sander posted by 9 people inesdesantiago leemond31 frohike dswan guhjy jfr heliopais maralena bootsy
	The utility of MAS5 expression summary and detection call algorithms [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Stuart Pepper, Emma Saunders, Laura Edwards, Claire Wilson, Crispin Miller posted by 8 people dswan lwaldron frohike heliopais jfr ryanraaum wirawan waszak
	A flexible rank-based framework for detecting copy number aberrations from array data [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 722-728. by Thomas LaFramboise, Wendy Winckler, Roman K. Thomas posted by 6 people jfr djkt rdiaz dswan guhjy pkonings
	MSMAD: a computationally efficient method for the analysis of noisy array CGH data. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 703-713. by Eva Budinska, Eva Gelnarova, Michael G. Schimek posted by 6 people jfr nuin rdiaz guhjy dswan pkonings
	Estimation of tumor heterogeneity using CGH array data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by K. Wang, J. Li, S. Li, L. Bolund, C. Wiuf posted by 6 people jfr mdharsee rdiaz pkonings Bioinformatics dswan
	MAGETabulator, a suite of tools to support the microarray data format MAGE-TAB. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 2. (15 January 2009), pp. 279-280. by T. F. Rayner, F. I. Rezwan, M. Lukk, et al.X. Z. Bradley, A. Farne, E. Holloway, J. Malone, E. Williams, H. Parkinson posted by 5 people guhjy jfr Bioinformatics dswan pkonings
	CNVDetector: locating copy number variations using array CGH data [My Copy] Bioinformatics, Vol. 24, No. 23. (1 December 2008), pp. 2773-2775. by Peng-An Chen, Hsiao-Fei Liu, Kun-Mao Chao posted by 5 people jfr pkonings dswan rdiaz nuin
	An integrated software system for analyzing ChIP-chip and ChIP-seq data. [My Copy] Nature biotechnology, Vol. 26, No. 11. (02 November 2008), pp. 1293-1300. by Hongkai Ji, Hui Jiang, Wenxiu Ma, David S. Johnson, Richard M. Myers, Wing H. Wong posted by 28 people hzoltan Neuroblastoma fpattyn stubrown isimpson SIMR bioinformatics huali tonamswish ewilban1 sebastien_vigneau jfr kmdaily cassj bryankr malcook rschulz mcm behindtherabbit psique renatomilani polivares guhjy inesdesantiago pengchy kengg BenosLab bais idonaldson
	The development and impact of 454 sequencing [My Copy] Nat Biotech, Vol. 26, No. 10. (October 2008), pp. 1117-1124. by Jonathan M. Rothberg, John H. Leamon posted by 12 people katholt n00c jfr yupu frohike natstreet druvus nuin alexknight reyez psique GeeSharpMinor
	Hidden copy number variation in the HapMap population. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 29. (22 July 2008), pp. 10067-10072. by J. C. Marioni, M. White, S. Tavaré, A. G. Lynch posted by 7 people psique Roswell Cancer Crosstalk Zephyrus jfr waszak guhjy Stew
	A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5891. (15 August 2008), pp. 956-960. by M. Sultan, M. H. Schulz, H. Richard, et al.A. Magen, A. Klingenhoff, M. Scherf, M. Seifert, T. Borodina, A. Soldatov, D. Parkhomchuk, D. Schmidt, S. O'Keeffe, S. Haas, M. Vingron, H. Lehrach, M. L. Yaspo posted by 31 people hzoltan zufar eszczurek n00c dna inesdesantiago ilyashl TRHvidsten poschm bertelsen ivanek guhjy wutongbin jfr raistrick BenosLab gracio xingxu psique oelemento Ema reyez caseybrown kjglennie dh0000 GeeSharpMinor balicea djkt ArtemPankin Khavkin's lab zwang
	Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE) [My Copy] Nature Biotechnology, Vol. 26, No. 3. (07 March 2008), pp. 305-312. by Eric W. Deutsch, Catherine A. Ball, Jules J. Berman, et al.G. Steven Bova, Alvis Brazma, Roger E. Bumgarner, David Campbell, Helen C. Causton, Jeffrey H. Christiansen, Fabrice Daian, Delphine Dauga, Duncan R. Davidson, Gregory Gimenez, Young A. Goo, Sean Grimmond, Thorsten Henrich, Bernhard G. Herrmann, Michael H. Johnson, Martin Korb, Jason C. Mills, Asa J. Oudes, Helen E. Parkinson, Laura E. Pascal, Nicolas Pollet, John Quackenbush, Mirana Ramialison, Martin Ringwald, David Salgado, Susanna-Assunta Sansone, Gavin Sherlock, Christian J. Stoeckert, Jason Swedlow, Ronald C. Taylor, Laura Walashek, Anthony Warford, David G. Wilkinson, Yi Zhou, Leonard I. Zon, Alvin Y. Liu, Lawrence D. True posted by 7 people mordiano zwang katerinakal guhjy psique parkinson's disease references jfr
	Direct multiplexed measurement of gene expression with color-coded probe pairs. [My Copy] Nature biotechnology, Vol. 26, No. 3. (17 March 2008), pp. 317-325. by Gary K. Geiss, Roger E. Bumgarner, Brian Birditt, et al.Timothy Dahl, Naeem Dowidar, Dwayne L. Dunaway, H. Perry Fell, Sean Ferree, Renee D. George, Tammy Grogan, Jeffrey J. James, Malini Maysuria, Jeffrey D. Mitton, Paola Oliveri, Jennifer L. Osborn, Tao Peng, Amber L. Ratcliffe, Philippa J. Webster, Eric H. Davidson, Leroy Hood, Krassen Dimitrov posted by 11 people manduca robert guhjy austin vplagnol GeeSharpMinor shikin GeneGo psique parkinson's disease references jfr
	QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data. [My Copy] Nucleic Acids Res (27 March 2007) by Stefano Colella, Christopher Yau, Jennifer M M. Taylor, et al.Ghazala Mirza, Helen Butler, Penny Clouston, Anne S S. Bassett, Anneke Seller, Christopher C C. Holmes, Jiannis Ragoussis posted by 9 people rdiaz qfwills druvus waszak parkinson's disease references psique caldavis jfr Bioinformatics
	Relative Impact of Nucleotide and Copy Number Variation on Gene Expression Phenotypes [My Copy] Science, Vol. 315, No. 5813. (9 February 2007), pp. 848-853. by Barbara E. Stranger, Matthew S. Forrest, Mark Dunning, et al.Catherine E. Ingle, Claude Beazley, Natalie Thorne, Richard Redon, Christine P. Bird, Anna de Grassi, Charles Lee, Chris Tyler-Smith, Nigel Carter, Stephen W. Scherer, Simon Tavare, Panagiotis Deloukas, Matthew E. Hurles, Emmanouil T. Dermitzakis posted by 38 people biovils lp2 daveGerrard sameersoi timhubbard Roswell Cancer Crosstalk Zephyrus ajbattle jonilaserson ilyashl emptyhb buyske zufar koller Visiting Position waszak daed psique jo_davies srp33 guhjy jfr dpollard balicea rdiaz qfwills djkt vplagnol shigepong jlangdon xingxu Bioinformatics EisenLab cisevol cis-regulatory-evolution caseybrown frohike jandot
	Faulty old ideas about translational regulation paved the way for current confusion about how microRNAs function [My Copy] Gene, Vol. 423, No. 2. (1 November 2008), pp. 108-115. by Marilyn Kozak posted by 5 people bpcusack valeriehilgers psique microRNA heliopais
	Control of protein synthesis and mRNA degradation by microRNAs [My Copy] Current Opinion in Cell Biology In Cell regulation, Vol. 20, No. 2. (April 2008), pp. 214-221. by Jidong Liu posted by 9 people tonamswish valeriehilgers guhjy giovenko dchughes psique maximilianh microRNA heliopais
	Systems biology: Untangling the protein web [My Copy] Nature, Vol. 460, No. 7253. (15 July 2009), pp. 415-418. by Nathan Blow posted by 16 people Orengo Group Journal Picks robertrentzsch pekrau apocapoc psique leemond31 colmryan reyez carlk guhjy saket tmmurali dswan dullhunk renatomilani agonzale
	Genetic susceptibility to psoriasis: an emerging picture. [My Copy] Genome medicine, Vol. 1, No. 7. (22 July 2009) by Rhodri L. Smith, Richard B. Warren, Christopher E. Griffiths, Jane Worthington posted by 2 people psique pkonings
	Genetics of human gene expression: mapping DNA variants that influence gene expression. [My Copy] Nature reviews. Genetics, Vol. 10, No. 9. (28 September 2009), pp. 595-604. by Vivian G. Cheung, Richard S. Spielman posted by 19 people rcr1991 PaulaBO Zephyrus greg frohike psique giovanni Journal picks PabloMarin TRHvidsten misonneh sameersoi rdiaz ericrpaquet engelhardt ilyashl jbhiatt pkonings guhjy
	A highly annotated whole-genome sequence of a Korean individual [My Copy] Nature, Vol. advance online publication, No. 7258. (08 July 2009), pp. 1011-1015. by Jong-Il Kim, Young S. Ju, Hansoo Park, et al.Sheehyun Kim, Seonwook Lee, Jae-Hyuk Yi, Joann Mudge, Neil A. Miller, Dongwan Hong, Callum J. Bell, Hye-Sun Kim, In-Soon Chung, Woo-Chung Lee, Ji-Sun Lee, Seung-Hyun Seo, Ji-Young Yun, Hyun N. Woo, Heewook Lee, Dongwhan Suh, Seungbok Lee, Hyun-Jin Kim, Maryam Yavartanoo, Minhye Kwak, Ying Zheng, Mi K. Lee, Hyunjun Park, Jeong Y. Kim, Omer Gokcumen, Ryan E. Mills, Alexander W. Zaranek, Joseph Thakuria, Xiaodi Wu, Ryan W. Kim, Jim J. Huntley, Shujun Luo, Gary P. Schroth, Thomas D. Wu, HyeRan Kim, Kap-Seok Yang, Woong-Yang Park, Hyungtae Kim, George M. Church, Charles Lee, Stephen F. Kingsmore, Jeong-Sun Seo posted by 10 people n00c fenghezi nicolesoranzo mtagaya reyez Journal picks pkonings psique djkt jbhiatt
	Fitness and its role in evolutionary genetics [My Copy] Nat Rev Genet, Vol. 10, No. 8. (23 August 2009), pp. 531-539. by H. Allen Orr posted by 17 people CulCog PabloMarin Zephyrus robfsouza xingxu pkonings gwallau leliavski natstreet shikin Annab psique Journal picks ppgardne druvus leemond31 nuin
	DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources [My Copy] Vol. 84, No. 4. (10 April 2009), pp. 524-533. by Helen V. Firth, Shola M. Richards, A. Paul Bevan, et al.Stephen Clayton, Manuel Corpas, Diana Rajan, Steven V. Vooren, Yves Moreau, Roger M. Pettett, Nigel P. Carter posted by 3 people psique bmenten pkonings
	The automation of science. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5923. (3 April 2009), pp. 85-89. by Ross D. King, Jem Rowland, Stephen G. Oliver, et al.Michael Young, Wayne Aubrey, Emma Byrne, Maria Liakata, Magdalena Markham, Pinar Pir, Larisa N. Soldatova, Andrew Sparkes, Kenneth E. Whelan, Amanda Clare posted by 58 people Sergey_gerbek schwartzjmc yyfwuhan antonkratz CulCog ckai1 jcaddy thegoose tommcdonagh tonamswish qwermish axeltan ocs TobiasAbenius CameronNeylon guhjy davidcsterratt bcondon Scis0000002 kevinemamy TRHvidsten emiko Zephyrus arne muraken vagoskar katiehumphry NaCTeM Effie robertknight acrmartins psique dbikard tyrell_turing Tomste renatomilani subhacom druvus ramanuja sen_cheng coela VGreiff hagechouchin443 Benja austin stober rdiaz Fortran napvasconcelos mikel_egana allysonlister dullhunk fgibson pkonings MetabolicModeling JeremyZucker jbhiatt tmmurali
	Local DNA topography correlates with functional noncoding regions of the human genome. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 389-392. by Stephen C. Parker, Loren Hansen, Hatice Ozel O. Abaan, Thomas D. Tullius, Elliott H. Margulies posted by 45 people BergmanLab daveGerrard operon sujaikumar antonkratz pradiptaray roys gjuggler benjaminsb gdb hagechouchin443 tomtullius scjparker psique orzenil emptyhb ilyashl coela VGreiff APRegier myzhang pkonings akundaje athma absterga rpatward timflutre Mycology stajich bpcusack jbhiatt djkt structural_bioinformatics dhlbh friendpine RockmanLab EisenLab cis-regulatory-evolution dpollard inesdesantiago JustinCrocker aprasad maximilianh idonaldson kshundyak
	GWA studies: rewriting the story of IBD [My Copy] Trends in Genetics (13 February 2009) by Marcia L. Budarf, Catherine Labbé, Geneviève David, John D. Rioux posted by 2 people psique pkonings
	A Groupwise Association Test for Rare Mutations Using a Weighted Sum Statistic [My Copy] PLoS Genet, Vol. 5, No. 2. (13 February 2009), e1000384. by Bo E. Madsen, Sharon R. Browning posted by 6 people kimorley psique ptrobajo pkonings bertrandservin djkt
	A burst of segmental duplications in the genome of the African great ape ancestor [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 877-881. by Tomas Marques-Bonet, Jeffrey M. Kidd, Mario Ventura, et al.Tina A. Graves, Ze Cheng, Ladeana W. Hillier, Zhaoshi Jiang, Carl Baker, Ray Malfavon-Borja, Lucinda A. Fulton, Can Alkan, Gozde Aksay, Santhosh Girirajan, Priscillia Siswara, Lin Chen, Maria F. Cardone, Arcadi Navarro, Elaine R. Mardis, Richard K. Wilson, Evan E. Eichler posted by 9 people psique dakelley provero shoshin anphony pkonings treangen djkt jbhiatt
	DNA variations in human and medical genetics: 25 years of my experience [My Copy] J Hum Genet, Vol. 54, No. 1. (January 2009), pp. 1-8. by Yusuke Nakamura posted by 3 people guhjy psique pkonings
	Interpretation of Genetic Association Studies: Markers with Replicated Highly Significant Odds Ratios May Be Poor Classifiers [My Copy] PLoS Genet, Vol. 5, No. 2. (6 February 2009), e1000337. by Johanna Jakobsdottir, Michael B. Gorin, Yvette P. Conley, Robert E. Ferrell, Daniel E. Weeks posted by 11 people xingxu rdiaz sg45653 jessopher pkonings Roswell Cancer Crosstalk Zephyrus psique mdharsee wimufi djkt
	Searching for Genotype-Phenotype Structure: Using Hierarchical Log-Linear Models in Crohn Disease [My Copy] The American Journal of Human Genetics (29 January 2009) by J. Chapman, C. Onnie, N. Prescott, et al.S. Fisher, J. Mansfield, C. Mathew, C. Lewis, C. Verzilli, J. Whittaker posted by 3 people jsatkosk pkonings psique
	Evolutionary genomics: A positive becomes a negative [My Copy] Nature, Vol. 457, No. 7229. (29 January 2009), pp. 543-544. by Laurence D. Hurst posted by 10 people pkonings natstreet druvus R.E.A.D Zephyrus dinnes klo psique katholt stevanspringer
	Decanalization and the origin of complex disease [My Copy] Nat Rev Genet, Vol. 10, No. 2. (February 2009), pp. 134-140. by Greg Gibson posted by 9 people psique guhjy Roswell Cancer Crosstalk Zephyrus shikin misonneh wimufi lp2 pkonings
	AnnotationSketch: a genome annotation drawing library. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 4. (15 February 2009), pp. 533-534. by S. Steinbiss, G. Gremme, C. Schärfer, M. Mader, S. Kurtz posted by 13 people guhjy newgene psique cassj Cortel nuin BergmanLab cisevol Roswell Cancer Crosstalk Zephyrus jmeppley pkonings kshameer
	Human genetics: Individual genomes diversify [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 49-51. by Samuel Levy, Robert L. Strausberg posted by 2 people psique pkonings
	Personal genomes: Misdirected precaution [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 34-35. by Barbara Prainsack, Jenny Reardon, Richard Hindmarsh, Herbert Gottweis, Ursula Naue, Jeantine E. Lunshof posted by 3 people sg45653 psique pkonings
	Personal Genomes: When consent gets in the way [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 32-33. by Patrick Taylor posted by 7 people tnhh klo williamgunn PredictER psique sg45653 pkonings
	Fewer permutations, more accurate P-values [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i161-168. by Theo A. Knijnenburg, Lodewyk F. A. Wessels, Marcel J. T. Reinders, Ilya Shmulevich posted by 12 people heliopais jfr rdiaz Ayest farhat Journal picks AlexBateman bmajoros idonaldson TRHvidsten djkt sameersoi
	SHRiMP: Accurate Mapping of Short Color-space Reads [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000386. by Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno posted by 27 people heliopais jfr cthachuk hzoltan bozdagd ilanc burak guhjy djkt trfield n00c natstreet adijr druvus Bioinformatics - CRUK Stew farhat humburg kshameer operon Mycology stajich GeeSharpMinor Journal picks AlexBateman Bioinformatics barry
	FDR made easy in differential feature discovery and correlation analyses [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1461-1462. by Xuefeng B. Ling, Harvey Cohen, Joseph Jin, Irwin Lau, James Schilling posted by 8 people heliopais jfr rdiaz fishtank brianb nuin idonaldson guhjy
	Prediction of guide strand of microRNAs from its sequence and secondary structure [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (09 April 2009), 105. by Firoz Ahmed, Hifzur Ansari, Gajendra Raghava posted by 6 people heliopais microRNA jfr homonecloco raventhorn86 samgj
	mRNA-Seq whole-transcriptome analysis of a single cell [My Copy] Nature Methods, Vol. 6, No. 5. (06 April 2009), pp. 377-382. by Fuchou Tang, Catalin Barbacioru, Yangzhou Wang, et al.Ellen Nordman, Clarence Lee, Nanlan Xu, Xiaohui Wang, John Bodeau, Brian B. Tuch, Asim Siddiqui, Kaiqin Lao, M. Azim Surani posted by 17 people hzoltan jfr inesdesantiago heliopais manduca debasis Vincent_Rouilly mtagaya woodson8 gdb guhjy kintoki fenghezi absterga jbhiatt pengchy sleepingcell
	Predicting microRNA targets in time-series microarray experiments via functional data analysis. [My Copy] BMC bioinformatics, Vol. 10 Suppl 1, No. Suppl 1. (2009), S32. by B. J. Parker, J. Wen posted by 3 people jfr microRNA heliopais
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven Salzberg posted by 41 people jfr hzoltan cthachuk darshan fstrozzi adijr debasis bozdagd BergmanLab polivares torfinnnome n00c talponer jmcq rschulz SIMR bioinformatics ghattem operon humburg idonaldson mmartin iSEEM skembel dquest heliopais djkt GeeSharpMinor bertelsen darian Notre Dame Bioinformatics semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus
	Global gene expression analysis reveals reduced abundance of putative microRNA targets in human prostate tumours. [My Copy] BMC genomics, Vol. 10, No. 1. (26 February 2009), 93. by Ruping Sun, Xuping Fu, Yao Li, Yi Xie, Yumin Mao posted by 7 people mkiyer microRNA jfr heliopais natstreet provero neils
	In-depth characterization of the microRNA transcriptome in a leukemia progression model [My Copy] Genome Research, Vol. 18, No. 11. (November 2008), pp. 1787-1797. by Florian Kuchenbauer, Ryan D. Morin, Bob Argiropoulos, et al.Oleh I. Petriv, Malachi Griffith, Michael Heuser, Eric Yung, Jessica Piper, Allen Delaney, Anna-Liisa Prabhu, Yongjun Zhao, Helen Mcdonald, Thomas Zeng, Martin Hirst, Carl L. Hansen, Marco A. Marra, R. Keith Humphries posted by 5 people heliopais gdb microRNA jfr samgj
	The miR-17~92 cluster collaborates with the Sonic Hedgehog pathway in medulloblastoma. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 8. (24 February 2009), pp. 2812-2817. by T. Uziel, F. V. Karginov, S. Xie, et al.J. S. Parker, Y. D. Wang, A. Gajjar, L. He, D. Ellison, R. J. Gilbertson, G. Hannon, M. F. Roussel posted by 5 people tonamswish heliopais microRNA jfr valeriehilgers
	MiRTif: a support vector machine-based microRNA target interaction filter [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 12. (2008) by Yuchen Yang, Yu P. Wang, Kuo B. Li posted by 5 people jfr microRNA heliopais guhjy pengchy
	Finding microRNA regulatory modules in human genome using rule induction [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 12. (2008) by Dang Tran, Kenji Satou, Tu Ho posted by 5 people heliopais microRNA jfr mtagaya pengchy
	Chromatin structure analyses identify miRNA promoters. [My Copy] Genes & development, Vol. 22, No. 22. (15 November 2008), pp. 3172-3183. by Fatih Ozsolak, Laura L. Poling, Zhengxin Wang, et al.Hui Liu, X. Shirley Liu, Robert G. Roeder, Xinmin Zhang, Jun S. Song, David E. Fisher posted by 14 people danaiancu hrogers BergmanLab cisevol gdb maximilianh tonamswish heliopais microRNA jfr samgj emptyhb valeriehilgers pengchy
	Microarray-based approach identifies microRNAs and their target functional patterns in polycystic kidney disease. [My Copy] BMC genomics, Vol. 9 (23 December 2008), 624. by P. Pandey, B. Brors, P. K. Srivastava, et al.A. Bott, S. N. Boehn, H. J. Groene, N. Gretz posted by 4 people roboonya jfr microRNA heliopais
	HuMiTar: A sequence-based method for prediction of human microRNA targets [My Copy] Algorithms for Molecular Biology, Vol. 3, No. 1. (2008) by Jishou Ruan, Hanzhe Chen, Lukasz Kurgan, Ke Chen, Chunsheng Kang, Peiyu Pu posted by 8 people danaiancu heliopais microRNA jfr nuin guhjy valeriehilgers pengchy
	MicroRNA regulation of a cancer network: Consequences of the feedback loops involving miR-17-92, E2F, and Myc [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 50. (16 December 2008), pp. 19678-19683. by Baltazar D. Aguda, Yangjin Kim, Melissa G. Piper-Hunter, Avner Friedman, Clay B. Marsh posted by 6 people jfr microRNA heliopais pengchy myzhang vvoorr
	Structural profiles of human miRNA families from pairwise clustering [My Copy] Bioinformatics (4 December 2008), btn628. by Bogumil Kaczkowski, Elfar Torarinsson, Kristin Reiche, Jakob H. Havgaard, Peter F. Stadler, Jan Gorodkin posted by 5 people jfr djkt microRNA heliopais druvus
	Emerging Role of miR-106b-25/miR-17-92 Clusters in the Control of Transforming Growth Factor beta Signaling [My Copy] Cancer Res, Vol. 68, No. 20. (15 October 2008), pp. 8191-8194. by Fabio Petrocca, Andrea Vecchione, Carlo M. Croce posted by 5 people tonamswish jfr microRNA heliopais guhjy
	MicroRNA-155 is regulated by the transforming growth factor beta/Smad pathway and contributes to epithelial cell plasticity by targeting RhoA. [My Copy] Molecular and cellular biology, Vol. 28, No. 22. (15 November 2008), pp. 6773-6784. by William Kong, Hua Yang, Lili He, et al.Jian-jun J. Zhao, Domenico Coppola, William S. Dalton, Jin Q. Cheng posted by 5 people jfr valeriehilgers guhjy microRNA heliopais
	MotifMap: a human genome-wide map of candidate regulatory motif sites [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 167-174. by Xiaohui Xie, Paul Rigor, Pierre Baldi posted by 12 people jakebiesinger kmdaily guhjy wowalz ilyashl jfr abizar heliopais nklee idonaldson nuin djkt
	Gene set enrichment analysis for non-monotone association and multiple experimental categories [My Copy] BMC Bioinformatics, Vol. 9 (14 November 2008), 481. by Rongheng, Leping Li posted by 8 people jfr paszkows heliopais tg150 guhjy imina lptolik barriot
	The art of microRNA: Various strategies leading to gene silencing via an ancient pathway [My Copy] Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, Vol. 1779, No. 11. (November 2008), pp. 655-662. by G. Tang, X. Tang, V. Mendu, et al.X. Tang, X. Jia, Q. Chen, L. He posted by 3 people jfr microRNA heliopais
	miRecords: an integrated resource for microRNA-target interactions [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D105-110. by Feifei Xiao, Zhixiang Zuo, Guoshuai Cai, Shuli Kang, Xiaolian Gao, Tongbin Li posted by 12 people Roswell Cancer Crosstalk Zephyrus jfr capitall nuin microRNA heliopais ealloza microRNA database yyby moleopard guhjy
	A Novel Signaling Pathway Impact Analysis (SPIA) [My Copy] Bioinformatics (5 November 2008), btn577. by Adi L. Tarca, Sorin Draghici, Purvesh Khatri, et al.Sonia S. Hassan, Pooja Mittal, Jung-Sun Kim, Chong J. Kim, Juan P. Kusanovic, Roberto Romero posted by 10 people ipark-kaist bertelsen jfr heliopais lptolik ConklinLab AlexanderPico thomaskelder guhjy renatomilani
	Detecting microRNA binding and siRNA off-target effects from expression data. [My Copy] Nature methods, Vol. 5, No. 12. (2 December 2008), pp. 1023-1025. by Stijn van Dongen, Cei Abreu-Goodger, Anton J. Enright posted by 10 people heliopais Jarman Lab isimpson gdb microRNA jfr valeriehilgers russel12 megraw samgj
	Most mammalian mRNAs are conserved targets of microRNAs [My Copy] Genome Research, Vol. 19, No. 1. (27 January 2009), pp. 92-105. by Robin C. Friedman, Kyle K. Farh, Christopher B. Burge, David P. Bartel posted by 20 people hzoltan giovenko gbloeb sterovetta gdb guhjy jfr qfwills pengchy druvus felsani microRNA heliopais dchughes valeriehilgers Bioinformatics - CRUK Stew fpattyn MSchipper samgj
	miROrtho: computational survey of microRNA genes [My Copy] Nucl. Acids Res. (15 October 2008), gkn707. by Daniel Gerlach, Evgenia V. Kriventseva, Nazim Rahman, Charles E. Vejnar, Evgeny M. Zdobnov posted by 10 people jfr microRNA heliopais guhjy microRNA database moleopard giovenko druvus samgj pengchy
	Biological principles of microRNA-mediated regulation: shared themes amid diversity [My Copy] Nat Rev Genet, Vol. 9, No. 11. (November 2008), pp. 831-842. by Alex S. Flynt, Eric C. Lai posted by 18 people qfwills jfr valeriehilgers microRNA database guhjy Roswell Cancer Crosstalk Zephyrus dakelley microRNA heliopais giovenko natstreet druvus Mycology stajich ealloza dchughes pengchy
	Analysis of regulatory network topology reveals functionally distinct classes of microRNAs [My Copy] Nucl. Acids Res., Vol. 36, No. 20. (1 November 2008), pp. 6494-6503. by Xueping Yu, Jimmy Lin, Donald J. Zack, Joshua T. Mendell, Jiang Qian posted by 12 people megraw jfr emptyhb ealloza mtagaya BenosLab microRNA heliopais giovenko samgj pengchy snow_dragon
	Probabilistic base calling of Solexa sequencing data. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008), 431. by Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef posted by 18 people heliopais orzenil n00c dakelley jfr usagi-kirin magusina SIMR bioinformatics malcook natstreet druvus iris42 abizar caseybrown reyez pengchy waszak nuin
	CoGemiR: a comparative genomics microRNA database. [My Copy] BMC genomics, Vol. 9, No. 1. (06 October 2008), 457. by V. Maselli, D. Di Bernardo, S. Banfi posted by 10 people giovenko ealloza jfr guhjy microRNA heliopais druvus natstreet pengchy samgj
	Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals [My Copy] Nature, Vol. 455, No. 7217. (30 October 2008), pp. 1193-1197. by Andrew Grimson, Mansi Srivastava, Bryony Fahey, et al.Ben J. Woodcroft, H. Rosaria Chiang, Nicole King, Bernard M. Degnan, Daniel S. Rokhsar, David P. Bartel posted by 10 people gdb jfr microRNA heliopais jforman valeriehilgers davfre giovenko djkt samgj
	Removal of AU Bias from Microarray mRNA Expression Data Enhances Computational Identification of Active MicroRNAs [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (3 October 2008), e1000189. by Ran Elkon, Reuven Agami posted by 14 people magusina TRHvidsten lwaldron Alexander_Kanitz jfr giovenko ptrobajo druvus erel10 microRNA heliopais BenosLab djkt giovanni
	Primary microRNA transcripts are processed co-transcriptionally [My Copy] Nature Structural & Molecular Biology, Vol. 15, No. 9. (31 August 2008), pp. 902-909. by Mariangela Morlando, Monica Ballarino, Natalia Gromak, Francesca Pagano, Irene Bozzoni, Nick J. Proudfoot posted by 8 people giovenko valeriehilgers jfr heliopais caizhiqiang sg45653 microRNA pengchy
	Mapping short DNA sequencing reads and calling variants using mapping quality scores [My Copy] Genome Research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted by 40 people heliopais hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier SIMR bioinformatics ghattem jbhiatt mmartin michaelbarton BergmanLab polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat
	Preferential regulation of duplicated genes by microRNAs in mammals [My Copy] Genome Biology, Vol. 9, No. 8. (2008) by Jingjing Li, Gabriel Musso, Zhaolei Zhang posted by 11 people jfr samgj microRNA heliopais natstreet BenosLab sabahkadri djkt bpcusack pengchy fpattyn
	Regulatory networks define phenotypic classes of human stem cell lines [My Copy] Nature (24 August 2008) by Franz-Josef Müller, Louise C. Laurent, Dennis Kostka, et al.Igor Ulitsky, Roy Williams, Christina Lu, In-Hyun Park, Mahendra S. Rao, Ron Shamir, Philip H. Schwartz, Nils O. Schmidt, Jeanne F. Loring posted by 12 people isimpson guhjy jfr zwang ajaymalik ptrobajo heliopais Oxford Virology wsjames roys tmmurali caseybrown
	mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein\|[ndash]\|enriched transcripts [My Copy] Nature Methods, Vol. 5, No. 9. (17 August 2008), pp. 813-819. by Molly Hammell, Dang Long, Liang Zhang, et al.Andrew Lee, C. Steven Carmack, Min Han, Ye Ding, Victor Ambros posted by 6 people sterovetta valeriehilgers jfr microRNA heliopais maralena
	Connecting microRNA Genes to the Core Transcriptional Regulatory Circuitry of Embryonic Stem Cells [My Copy] Cell, Vol. 134, No. 3. (08 August 2008), pp. 521-533. by Alexander Marson, Stuart S. Levine, Megan F. Cole, et al.Garrett M. Frampton, Tobias Brambrink, Sarah Johnstone, Matthew G. Guenther, Wendy K. Johnston, Marius Wernig, Jamie Newman posted by 15 people danaiancu gbloeb mtagaya djkt valeriehilgers inesdesantiago jfr microRNA heliopais ealloza megraw bootsy pengchy maralena gdb
	The impact of microRNAs on protein output. [My Copy] Nature, Vol. 455, No. 7209. (4 September 2008), pp. 64-71. by Daehyun Baek, Judit Villén, Chanseok Shin, Fernando D. Camargo, Steven P. Gygi, David P. Bartel posted by 27 people framancuso danaiancu fishtank gderwin pengchy valeriehilgers guhjy kmdaily martin-novak samgj microRNA heliopais askrajiv natsdorf jfr frohike giovenko mtagaya megraw djkt brianb emptyhb erel10 maralena ajaymalik caizhiqiang gdb
	Technical variables in high-throughput miRNA expression profiling: much work remains to be done. [My Copy] Biochimica et biophysica acta, Vol. 1779, No. 11. (7 November 2008), pp. 758-765. by Peter T. Nelson, Wang-Xia X. Wang, Bernard R. Wilfred, Guiliang Tang posted by 7 people Bioinformatics - CRUK Stew heliopais fishtank microRNA jfr guhjy
	MicroRNA prediction with a novel ranking algorithm based on random walks. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008), pp. i50-58. by Yunpen Xu, Xuefeng Zhou, Weixiong Zhang posted by 4 people homonecloco jfr heliopais microRNA
	A weighted average difference method for detecting differentially expressed genes from microarray data [My Copy] Algorithms for Molecular Biology, Vol. 3 (26 June 2008), 8. by Koji Kadota, Yuji Nakai, Kentaro Shimizu posted by 6 people guhjy jfr heliopais vertikalist BTS-PT-AS-CS beete
	Highly sensitive and specific microRNA expression profiling using BeadArray technology. [My Copy] Nucleic acids research, Vol. 36, No. 14. (25 August 2008), gkn387. by Jing Chen, Jean Lozach, Eliza Wickham W. Garcia, et al.Bret Barnes, Shujun Luo, Ivan Mikoulitch, Lixin Zhou, Gary Schroth, Jian-Bing B. Fan posted by 8 people guhjy ptrobajo Bioinformatics - CRUK Stew inesdesantiago jfr heliopais microRNA
	Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. [My Copy] Nature biotechnology, Vol. 26, No. 8. (9 August 2008), pp. 941-946. by Marcelo A. German, Manoj Pillay, Dong-Hoon H. Jeong, et al.Amit Hetawal, Shujun Luo, Prakash Janardhanan, Vimal Kannan, Linda A. Rymarquis, Kan Nobuta, Rana German, Emanuele De Paoli, Cheng Lu, Gary Schroth, Blake C. Meyers, Pamela J. Green posted by 13 people guhjy valeriehilgers natstreet inesdesantiago GustavoLacerda lptolik microRNA heliopais giovenko jfr stajich Mycology megraw
	Inferring MicroRNA Activities by Combining Gene Expression with MicroRNA Target Prediction [My Copy] PLoS ONE, Vol. 3, No. 4. (23 April 2008), e1989. by Chao Cheng, Lei M. Li posted by 8 people frohike guhjy microRNA heliopais giovenko jfr bootsy mtagaya
	RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. [My Copy] Genome research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted by 49 people cthachuk hzoltan jwfoley heliopais debasis maren mtagaya mkiyer stubrown woodson8 jonilaserson burak Ayest ThomasDOtto SIMR bioinformatics huali n00c natstreet bandrewfox daed dandaman slevy03 pengchy felsani coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich Mycology giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda
	miRiad Roles for the miR-17-92 Cluster in Development and Disease [My Copy] Cell, Vol. 133, No. 2. (18 April 2008), pp. 217-222. by J. Mendell posted by 7 people giovenko danaiancu valeriehilgers jfr heliopais microRNA maralena
	E2F1-regulated microRNAs impair TGFbeta-dependent cell-cycle arrest and apoptosis in gastric cancer. [My Copy] Cancer cell, Vol. 13, No. 3. (11 March 2008), pp. 272-286. by Fabio Petrocca, Rosa Visone, Mariadele Rapazzotti R. Onelli, et al.Manisha H. Shah, Milena S. Nicoloso, Ivana de Martino, Dimitrios Iliopoulos, Emanuela Pilozzi, Chang-Gong G. Liu, Massimo Negrini, Luigi Cavazzini, Stefano Volinia, Hansjuerg Alder, Luigi P. Ruco, Gustavo Baldassarre, Carlo M. Croce, Andrea Vecchione posted by 7 people giovenko guhjy jfr microRNA heliopais zhlei maralena
	Discovering microRNAs from deep sequencing data using miRDeep [My Copy] Nat Biotech, Vol. 26, No. 4. (April 2008), pp. 407-415. by Marc R. Friedlander, Wei Chen, Catherine Adamidi, et al.Jonas Maaskola, Ralf Einspanier, Signe Knespel, Nikolaus Rajewsky posted by 17 people hzoltan thegoose2 natstreet fishtank ealloza GustavoLacerda iris42 C. elegans / WormBase tharris tmmurali giovanni stajich Mycology jfr heliopais microRNA gdb
	Multilevel Regulation of Gene Expression by MicroRNAs [My Copy] Science, Vol. 319, No. 5871. (28 March 2008), pp. 1789-1790. by Eugene V. Makeyev, Tom Maniatis posted by 9 people valeriehilgers guhjy inesdesantiago jfr ealloza microRNA heliopais emptyhb giovenko
	Gene Regulation by Transcription Factors and MicroRNAs [My Copy] Science, Vol. 319, No. 5871. (28 March 2008), pp. 1785-1786. by Oliver Hobert posted by 16 people tonamswish danaiancu megraw valeriehilgers guhjy inesdesantiago jfr ealloza zwang biomcgary microRNA heliopais emptyhb maralena bootsy siebert
	SEGS: Search for enriched gene sets in microarray data. [My Copy] J Biomed Inform (15 December 2007) by Igor Trajkovski, Nada Lavrač, Jakub Tolar posted by 5 people tg150 heliopais guhjy jfr GeeSharpMinor