dolchan's Top Recommendations

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	Nonnegative Matrix Factorization: An Analytical and Interpretive Tool in Computational Biology [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (25 July 2008), e1000029. by Karthik Devarajan posted by 15 people zufar kshameer bertelsen svozil rdiaz ptrobajo jfr aramesh2 roys bayesian bpcusack cabbagesofdoom luispedro guhjy mikaelhuss
	Computing paths and cycles in biological interaction graphs [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 181. by Steffen Klamt, Axel von Kamp posted by 5 people Scis0000002 rdiaz barriot imina shikin
	Exploring phenotype-associated modules in an oral cavity tumor using an integrated framework [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 795-800. by Zhirong Sun, Jie Luo, Yun Zhou, Junjie Luo, Ke Liu, Wenting Li posted by 2 people imina rdiaz
	Multivariate analysis of variance test for gene set analysis. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 897-903. by Chen-An A. Tsai, James J. Chen posted by 8 people jfr guhjy tonamswish natstreet dswan imina rdiaz thomaskelder
	Identification of differential gene pathways with principal component analysis. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 882-889. by Shuangge Ma, Michael R. Kosorok posted by 11 people jfr kemalpak padosori tonamswish heliopais dswan imina rdiaz VGreiff guhjy druvus
	Genetic network inference as a series of discrimination tasks [My Copy] Bioinformatics (5 February 2009), btp072. by Shuhei Kimura, Satoshi Nakayama, Mariko Hatakeyama posted by 3 people baldazen imina rdiaz
	Feature selection environment for genomic applications [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (22 October 2008), 451. by Fabricio Lopes, David Martins, Roberto Cesar posted by 7 people rdiaz jfr TRHvidsten GustavoG imina lptolik operon
	The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets - improving meta-analysis and prediction of prognosis. [My Copy] BMC medical genomics, Vol. 1, No. 1. (2008) by Andrew H. Sims, Graeme J. Smethurst, Yvonne Hey, et al.Michal J. Okoniewski, Stuart D. Pepper, Anthony Howell, Crispin J. Miller, Robert B. Clarke posted by 3 people rdiaz frohike imina
	Improving gene set analysis of microarray data by SAM-GS [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007), 242. by Irina Dinu, John Potter, Thomas Mueller, et al.Qi Liu, Adeniyi Adewale, Gian Jhangri, Gunilla Einecke, Konrad Famulski, Philip Halloran, Yutaka Yasui posted by 14 people tonamswish aramesh2 aviad_work zufar jfr ealloza shigepong ghattem GeeSharpMinor BioinfoCIPF waghsk LuigiAugugliaro heliopais renatomilani
	Analyzing gene expression data in terms of gene sets: methodological issues [My Copy] Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 980-987. by Jelle J. Goeman, Peter Buhlmann posted by 23 people hzoltan zufar srp33 bertelsen jperkins ptrobajo VGreiff tonamswish ipark-kaist aramesh2 ydhwang shikin raiyar SIMR bioinformatics ghattem jfr ealloza shigepong BioinfoCIPF heliopais guhjy diging_data BTS-PT-AS-CS
	Analyzing miRNA co-expression networks to explore TF-miRNA regulation. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 163. by Sanghamitra Bandyopadhyay, Malay Bhattacharyya posted by 12 people icecrown guhjy imina daforerog TRHvidsten SaraNasser natstreet Bioinformatics lwaldron erel10 ealloza druvus
	Simulation of large-scale rule-based models. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 910-917. by Joshua Colvin, Michael I. Monine, James R. Faeder, William S. Hlavacek, Daniel D. Von Hoff, Richard G. Posner posted by 3 people guhjy pauldobson imina
	Benchmarks for identification of ordinary differential equations from time series data [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 780-786. by Peter Gennemark, Dag Wedelin posted by 4 people kentz aheilbut agomez imina
	The DICS repository: module-assisted analysis of disease-related gene lists. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 830-831. by Sabine Dietmann, Elisabeth Georgii, Alexey Antonov, Koji Tsuda, Hans-Werner W. Mewes posted by 3 people jfr imina guhjy
	BISEN: Biochemical Simulation Environment. [My Copy] Bioinformatics (Oxford, England) (25 February 2009) by J Vanlier, F Wu, F Qi, et al.K C C. Vinnakota, Y Han, R K K. Dash, F Yang, D A A. Beard posted by 2 people imina guhjy
	Gene network reconstruction from transcriptional dynamics un-der kinetic model uncertainty: A case for the second derivative. [My Copy] Bioinformatics (Oxford, England) (13 February 2009) by David R R. Bickel, Zahra Montazeri, Pei-Chun C. Hsieh, Mary Beatty, Shai J J. Lawit, Nicholas J J. Bate posted by 4 people agomez joseph_x_zhou imina guhjy
	Enumeration of condition-dependent dense modules in protein interaction networks [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 933-940. by Elisabeth Georgii, Sabine Dietmann, Takeaki Uno, Philipp Pagel, Koji Tsuda posted by 7 people arne carlk hryk eesruiz imina grahamc mhamada
	A web-based software system for dynamic gene cluster comparison across multiple genomes. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 956-957. by Kashi Vishwanath V. Revanna, Vivek Krishnakumar, Qunfeng Dong posted by 6 people guhjy VGreiff imina natstreet druvus sebastien_vigneau
	Systems Biology Metabolic Modeling Assistant (SBMM): An on-tology-based tool for the integration of metabolic data in kinetic modeling. [My Copy] Bioinformatics (Oxford, England) (2 February 2009) by Armando Reyes-Palomares, Raul Montañez, Alejando Del Real-Chicharro, et al.Othmane Chniber, Amine Kerzazi, Ismael Navas-Delgado, Miguel Ángel A. Medina, José Aldana A. Montes, Francisca Sánchez-Jiménez posted by 8 people baker-group sobolevnrm mdstobbe agomez imina dagmar allysonlister dullhunk
	CORNA: testing gene lists for regulation by microRNAs [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 832-833. by X. Wu, M. Watson posted by 13 people VR lwaldron microRNA jfr guhjy Bioinformatics - CRUK Stew djkt nuin imina natstreet druvus mhamada
	Sparse combinatorial inference with an application in cancer biology [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 265-271. by Sach Mukherjee, Steven Pelech, Richard M. Neve, et al.Wen-Lin Kuo, Safiyyah Ziyad, Paul T. Spellman, Joe W. Gray, Terence P. Speed posted by 4 people ipark-kaist jfr mstumpf imina
	Multivariate gene expression analysis reveals functional connectivity changes between normal/tumoral prostates [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Andre Fujita, Luciana Gomes, Joao Sato, et al.Rui Yamaguchi, Carlos Thomaz, Mari Sogayar, Satoru Miyano posted by 5 people xingxu imina BTS-PT-AS-CS diging_data renatomilani
	Training set expansion: an approach to improving the reconstruction of biological networks from limited and uneven reliable interactions [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 243-250. by Kevin Y. Yip, Mark Gerstein posted by 7 people ptrobajo anf guhjy mstumpf imina grahamc kgutwin
	Towards systems genetic analyses in barley: Integration of phenotypic, expression and genotype data into GeneNetwork [My Copy] BMC Genetics, Vol. 9 (18 November 2008), 73. by Arnis, Robbie Waugh posted by 3 people orzenil imina druvus
	Genome-scale study of the importance of binding site context for transcription factor binding and gene regulation [My Copy] BMC Bioinformatics, Vol. 9 (17 November 2008), 484. by Jakub, Jan Komorowski posted by 2 people imina lptolik
	Gene set enrichment analysis for non-monotone association and multiple experimental categories [My Copy] BMC Bioinformatics, Vol. 9 (14 November 2008), 481. by Rongheng, Leping Li posted by 8 people jfr paszkows heliopais tg150 guhjy imina lptolik barriot
	Improved identification of conserved cassette exons using Bayesian networks [My Copy] BMC Bioinformatics, Vol. 9 (12 November 2008), 477. by Rileen Sinha, Michael Hiller, Rainer Pudimat, Ulrike Gausmann, Matthias Platzer, Rolf Backofen posted by 1 person imina
	Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 462. by Raffaele Giancarlo, Davide Scaturro, Filippo Utro posted by 8 people HermanSontrop jfr imina kittipat lptolik nuin druvus isimpson
	Assessment of protein set coherence using functional annotations [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Monica Chagoyen, Jose Carazo, Alberto P. Montano posted by 9 people sgoetz taguchi imina Keywan druvus grahamc lptolik barriot GeeSharpMinor
	Model-driven analysis of experimentally determined growth phenotypes for 465 yeast gene deletion mutants under 16 different conditions. [My Copy] Genome biology, Vol. 9, No. 9. (22 September 2008), R140. by Evan S. Snitkin, Aimée M. Dudley, Daniel M. Janse, Kaisheen Wong, George M. Church, Daniel Segrè posted by 3 people JeremyZucker michaelbarton imina
	Identifying gene regulatory modules of heat shock response in yeast [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Wei S. Wu, Wen H. Li posted by 2 people imina neils
	Comparative genomics of small RNA regulatory pathway components in vector mosquitoes. [My Copy] BMC genomics, Vol. 9, No. 1. (18 September 2008) by Corey L. Campbell, William C. Black, Ann M. Hess, Brian D. Foy posted by 2 people imina pengchy
	A Bayesian framework for data and hypotheses driven fusion of high throughput data: application to mouse organogenesis. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 178-189. by M. Bhattacharjee, C. Pritchard, P. Nelson posted by 2 people guhjy imina
	Transcription network construction for large-scale microarray datasets using a high-performance computing approach. [My Copy] BMC genomics, Vol. 9 Suppl 1 (2008) by M. M. Zhu, Q. Wu posted by 3 people guhjy imina jfr
	Haplotype block partitioning as a tool for dimensionality reduction in SNP association studies [My Copy] BMC Genomics, Vol. 9 (29 August 2008), 405. by Cristian Pattaro, Ingo Ruczinski, Daniele M. Fallin, Giovanni Parmigiani posted by 3 people maren imina rs
	A Discussion of Statistical Methods for Design and Analysis of Microarray Experiments for Plant Scientists [My Copy] Plant Cell, Vol. 18, No. 9. (1 September 2006), pp. 2112-2121. by Dan Nettleton posted by 2 people imina ptrobajo
	SGDI: system for genomic data integration. [My Copy] Pac Symp Biocomput (2008), pp. 141-152. by V. J. Carey, J. Gentry, R. Sarkar, D. Gentleman, S. Ramaswamy posted by 3 people imina guhjy jfr
	Detailing regulatory networks through large scale data integration [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 24. (15 December 2009), pp. 3267-3274. by Curtis Huttenhower, K. Tsheko Mutungu, Natasha Indik, et al.Woongcheol Yang, Mark Schroeder, Joshua J. Forman, Olga G. Troyanskaya, Hilary A. Coller posted by 14 people Orengo Group Journal Picks druvus bsamal natstreet H-Arrietaumn farhat TRHvidsten tmmurali meanerelk aaron_webber zufar ptrobajo rdiaz frohike
	Origins and functional impact of copy number variation in the human genome [My Copy] Nature In Nature, Vol. advance online publication (07 October 2009) by Donald F. Conrad, Dalila Pinto, Richard Redon, et al.Lars Feuk, Omer Gokcumen, Yujun Zhang, Jan Aerts, T. Daniel Andrews, Chris Barnes, Peter Campbell, Tomas Fitzgerald, Min Hu, Chun H. Ihm, Kati Kristiansson, Daniel G. MacArthur, Jeffrey R. MacDonald, Ifejinelo Onyiah, Andy W. Pang, Sam Robson, Kathy Stirrups, Armand Valsesia, Klaudia Walter, John Wei, Chris Tyler-Smith, Nigel P. Carter, Charles Lee, Stephen W. Scherer, Matthew E. Hurles posted by 23 people n00c Zephyrus gthorisson vplagnol biovils psique chvlyl daed daforerog zufar jessopher DrRichardBadge operon colinveal frohike sf11 sameersoi polivares dswan Journal picks qayub bpcusack rdiaz
	Bayesian statistical methods for genetic association studies [My Copy] Nature Reviews Genetics, Vol. 10, No. 10. (01 October 2009), pp. 681-690. by Matthew Stephens, David J. Balding posted by 28 people humburg daed welliegirl Geknitics shikin heliopais Zephyrus nuin matjes pkonings fastjoe23 guhjy maren gregdavisfromnj natstreet TRHvidsten zufar n00c lwaldron megraw rdiaz kimorley leliavski misonneh Journal picks qayub daforerog druvus
	An efficient method for identifying statistical interactors in gene association networks [My Copy] Biostat, Vol. 10, No. 4. (1 October 2009), pp. 706-718. by Alina Andrei, Christina Kendziorski posted by 3 people zufar rdiaz lwaldron
	Molecular networks as sensors and drivers of common human diseases. [My Copy] Nature, Vol. 461, No. 7261. (10 September 2009), pp. 218-223. by Eric E. Schadt posted by 19 people frohike icecrown guhjy daed robfree apocapoc ptrobajo MurphysLab biomcgary greg inesdesantiago pablocarb brianb abhishek_tiwari zufar pkonings rdiaz daforerog megraw
	Comparative study of gene set enrichment methods [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 275. by Luca Abatangelo, Rosalia Maglietta, Angela Distaso, et al.Annarita D'Addabbo, Teresa Creanza, Sayan Mukherjee, Nicola Ancona posted by 11 people shikin dswan zufar heliopais fpattyn pengchy rdiaz daforerog arjun_citeulike barriot druvus
	Moderated effect size and P-value combinations for microarray meta-analyses [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2692-2699. by Guillemette Marot, Jean-Louis Foulley, Claus-Dieter Mayer, Florence Jaffrezic posted by 8 people bsamal zufar shikin dswan renatomilani rdiaz nuin daforerog
	Gene ranking and biomarker discovery under correlation [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2700-2707. by Verena Zuber, Korbinian Strimmer posted by 8 people zufar rdiaz pkonings ericrpaquet guhjy brianb nuin neils
	CLEAN: CLustering Enrichment ANalysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 July 2009), 234. by Johannes Freudenberg, Vineet Joshi, Zhen Hu, Mario Medvedovic posted by 11 people dandaman zufar brianb nuin rdiaz dswan guhjy frohike RamuAnandakrishnan barriot renatomilani
	The SNP ratio test: pathway analysis of genome-wide association datasets [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2762-2763. by Colm O'Dushlaine, Elaine Kenny, Elizabeth A. Heron, et al.Ricardo Segurado, Michael Gill, Derek W. Morris, Aiden Corvin posted by 9 people shikin zufar liqbbi daforerog rdiaz natstreet pkonings guhjy druvus
	Automated multidimensional phenotypic profiling using large public microarray repositories. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 30. (28 July 2009), pp. 12323-12328. by Min Xu, Wenyuan Li, Gareth M. James, Michael R. Mehan, Xianghong Jasmine J. Zhou posted by 9 people zufar tmmurali giovanni Borelli rdiaz guhjy TRHvidsten yaredo ptrobajo
	Prediction and Interaction in Complex Disease Genetics: Experience in Type 1 Diabetes [My Copy] PLoS Genet, Vol. 5, No. 7. (3 July 2009), e1000540. by David G. Clayton posted by 7 people zufar merpublic ptrobajo rdiaz Journal picks kimorley psique
	puma: a Bioconductor package for propagating uncertainty in microarray analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 211. by Richard Pearson, Xuejun Liu, Guido Sanguinetti, Marta Milo, Neil Lawrence, Magnus Rattray posted by 10 people zufar rdiaz bertelsen Bioinformatics - CRUK Stew guhjy lwaldron brianb barriot neils
	Unite and conquer: univariate and multivariate approaches for finding differentially expressed gene sets [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2348-2354. by Galina V. Glazko, Frank Emmert-Streib posted by 9 people shikin zufar rdiaz brianb m509396 dswan natstreet guhjy neils
	Integrated analysis of DNA copy number and gene expression microarray data using gene sets [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 June 2009), 203. by Renee Menezes, Marten Boetzer, Melle Sieswerda, Gert J. van Ommen, Judith Boer posted by 11 people jfr daed zufar ptrobajo rdiaz dswan guhjy Bioinformatics lwaldron shikin barriot
	Gene ontology analysis of GWA study data sets provides insights into the biology of bipolar disorder. [My Copy] American journal of human genetics, Vol. 85, No. 1. (10 July 2009), pp. 13-24. by Peter Holmans, Elaine K. Green, Jaspreet Singh S. Pahwa, et al.Manuel A. Ferreira, Shaun M. Purcell, Pamela Sklar, Wellcome Trust Case-Control Consortium, Michael J. Owen, Michael C. O'Donovan, Nick Craddock posted by 6 people zufar Journal picks ns6 rdiaz psique daforerog
	Filtering Genes for Cluster and Network Analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 193. by David Tritchler, Elena Parkhomenko, Joseph Beyene posted by 9 people jfr zufar Bioinformatics dswan shikin lwaldron rdiaz bertelsen erexhepa
	Ratio adjustment and calibration scheme for gene-wise normalization to enhance microarray inter-study prediction [My Copy] Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1655-1661. by Chunrong Cheng, Kui Shen, Chi Song, Jianhua Luo, George C. Tseng posted by 5 people jfr zufar rdiaz Bioinformatics dswan
	Potential etiologic and functional implications of genome-wide association loci for human diseases and traits. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 23. (9 June 2009), pp. 9362-9367. by Lucia A. Hindorff, Praveen Sethupathy, Heather A. Junkins, et al.Erin M. Ramos, Jayashri P. Mehta, Francis S. Collins, Teri A. Manolio posted by 9 people xingxu misonneh liqbbi rdiaz guhjy zufar daforerog pkonings jsatkosk
	Impossibility of successful classification when useful features are rare and weak [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 22. (2 June 2009), pp. 8859-8864. by Jiashun Jin posted by 5 people zufar rdiaz gdb zwang TRHvidsten
	A Classifier-based approach to identify genetic similarities between diseases [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i21-29. by Marc A. Schaub, Irene M. Kaplow, Marina Sirota, Chuong B. Do, Atul J. Butte, Serafim Batzoglou posted by 5 people jfr zufar rdiaz ddunbar djkt
	Analysis of Gene Sets Based on the Underlying Regulatory Network [My Copy] Journal of Computational Biology, Vol. 16, No. 3. (March 2009), pp. 407-426. by Ali Shojaie, George Michailidis posted by 6 people zufar shikin guhjy Bioinformatics jfr rdiaz
	Human genetic variation and its contribution to complex traits. [My Copy] Nature reviews. Genetics, Vol. 10, No. 4. (01 April 2009), pp. 241-251. by Kelly A. Frazer, Sarah S. Murray, Nicholas J. Schork, Eric J. Topol posted by 21 people shikin ongenetics PabloMarin songpku guhjy ilyashl roys JoeSabatini pkonings Roswell Cancer Crosstalk Zephyrus jbhiatt daforerog welliegirl dbk psique zufar misonneh fenghezi rdiaz dchughes
	Correlation signature of the macroscopic states of the gene regulatory network in cancer. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 11. (17 March 2009), pp. 4079-4084. by Nikolai Slavov, Kenneth A. Dawson posted by 7 people zufar fpattyn jfr BTS-PT-AS-CS vertikalist rdiaz provero
	Beyond odds ratios--communicating disease risk based on genetic profiles. [My Copy] Nature reviews. Genetics, Vol. 10, No. 4. (24 April 2009), pp. 264-269. by P. Kraft, S. Wacholder, M. C. Cornelis, et al.F. B. Hu, R. B. Hayes, G. Thomas, R. Hoover, D. J. Hunter, S. Chanock posted by 12 people zufar Zephyrus PabloMarin lwaldron pkonings roys daforerog psique Roswell Cancer Crosstalk misonneh rdiaz guhjy
	A flexible two-stage procedure for identifying gene sets that are differentially expressed. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1019-1025. by Ruth Heller, Elisabetta Manduchi, Gregory R. Grant, Warren J. Ewens posted by 7 people jfr zufar renatomilani dswan shikin guhjy rdiaz
	Using Pathway Signatures as Means of Identifying Similarities among Microarray Experiments [My Copy] PLoS ONE, Vol. 4, No. 1. (6 January 2009), e4128. by Luca Beltrame, Lisa Rizzetto, Raffaele Paola, et al.Philippe Rocca-Serra, Luca Gambineri, Cristina Battaglia, Duccio Cavalieri posted by 6 people zufar lwaldron jfr rdiaz guhjy ptrobajo
	A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 861-867. by H. Bengtsson, A. Ray, P. Spellman, T. P. Speed posted by 7 people zufar Bioinformatics jfr djkt guhjy rdiaz pkonings
	A general modular framework for gene set enrichment analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (03 February 2009), 47. by Marit Ackermann, Korbinian Strimmer posted by 20 people bertelsen ptrobajo zufar srp33 vingron dipenps shikin arjun_citeulike guhjy pk506 aviad_work thomaskelder ydhwang rdiaz kshameer renatomilani Bioinformatics dswan cmzmasek RamuAnandakrishnan
	Comparison of small n statistical tests of differential expression applied to microarrays. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by Carl Murie, Owen Woody, Anna Y. Lee, Robert Nadon posted by 13 people hzoltan zufar guhjy daforerog rdiaz renatomilani Bioinformatics dswan Zephyrus behindtherabbit SIMR bioinformatics ghattem druvus
	On testing the significance of sets of genes [My Copy] (4 Sep 2007) by Bradley Efron, Robert Tibshirani posted by 2 people zufar rdiaz
	Detecting intergene correlation changes in microarray analysis: a new approach to gene selection. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 20. by Rui Hu, Xing Qiu, Galina Glazko, Lev Klebanov, Andrei Yakovlev posted by 11 people zufar sotacam BUR44Dcul Bioinformatics jfr rdiaz provero Zephyrus renatomilani guhjy irinamohorianu
	Incorporating pathway information into boosting estimation of high-dimensional risk prediction models [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 18. by Harald Binder, Martin Schumacher posted by 7 people zufar ajbattle Bioinformatics jfr rdiaz guhjy mdstobbe
	G-spots cause incorrect expression measurement in Affymetrix microarrays [My Copy] BMC Genomics, Vol. 9 (18 December 2008), 613. by Graham, Andrew P. Harrison posted by 2 people zufar rdiaz
	LRpath: A logistic regression approach for identifying enriched biological groups in gene expression data [My Copy] Bioinformatics (27 November 2008), btn592. by Maureen A. Sartor, George D. Leikauf, Mario Medvedovic posted by 11 people zufar rdiaz jfr guhjy heliopais VGreiff Bioinformatics dswan Roswell Cancer Crosstalk Zephyrus renatomilani
	RNA-Seq: a revolutionary tool for transcriptomics [My Copy] Nature Reviews Genetics, Vol. 10, No. 1. (01 January 2009), pp. 57-63. by Zhong Wang, Mark Gerstein, Michael Snyder posted by 45 people bsamal zufar CUBES hongkeun_park ngehlenborg hzoltan sandfire maren jwfoley urgi RNA-protein cthachuk heliopais GustavoLacerda rdiaz TRHvidsten dswan roys woodson8 jonilaserson gdb n00c ThomasDOtto burak natstreet athma druvus tonamswish fishtank daed JohnBallam jmcq dandaman cassj xingxu idonaldson raiyar inesdesantiago vplagnol jbhiatt giovanni orzenil nuin guhjy GeeSharpMinor
	Genetic mapping in human disease. [My Copy] Science (New York, N.Y.), Vol. 322, No. 5903. (7 November 2008), pp. 881-888. by David Altshuler, Mark J. Daly, Eric S. Lander posted by 21 people psique mingzhi buyske Zephyrus ilyashl rdiaz zufar jfr maren guhjy daforerog gbloeb jbhiatt eetadic vplagnol cheyloveday Roswell Cancer Crosstalk songpku renatomilani lp2 pkonings
	CMA - A comprehensive Bioconductor package for supervised classification with high dimensional data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Martin Slawski, Martin Daumer, Anne L. Boulesteix posted by 12 people zufar Bioinformatics - CRUK Stew anf jfr akastrin rdiaz nuin guhjy druvus pengchy GeeSharpMinor
	Identifying differentially expressed subnetworks with MMG. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 23. (1 December 2008), pp. 2792-2793. by J. Noirel, G. Sanguinetti, P. C. Wright posted by 12 people zufar pauldobson jfr sg45653 pengchy behindtherabbit roys jiayi369 tmmurali bertelsen guhjy rdiaz
	Statistical challenges in preprocessing in microarray experiments in cancer. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 19. (1 October 2008), pp. 5959-5966. by K. Owzar, W. T. Barry, S. H. Jung, I. Sohn, S. L. George posted by 9 people zufar Bioinformatics lwaldron Zephyrus rdiaz jfr shikin guhjy winterschlaefer
	Higher criticism thresholding: Optimal feature selection when useful features are rare and weak [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 39. (30 September 2008), pp. 14790-14795. by David Donoho, Jiashun Jin posted by 7 people zufar guhjy sschurer phoenixzxl rdiaz briordan sg45653
	The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies. [My Copy] BMC bioinformatics, Vol. 9 Suppl 9, No. Suppl 9. (2008), S10. by Leming Shi, Wendell D. Jones, Roderick V. Jensen, et al.Stephen C. Harris, Roger G. Perkins, Federico M. Goodsaid, Lei Guo, Lisa J. Croner, Cecilie Boysen, Hong Fang, Feng Qian, Shashi Amur, Wenjun Bao, Catalin C. Barbacioru, Vincent Bertholet, Xiaoxi Megan M. Cao, Tzu-Ming M. Chu, Patrick J. Collins, Xiao-Hui H. Fan, Felix W. Frueh, James C. Fuscoe, Xu Guo, Jing Han, Damir Herman, Huixiao Hong, Ernest S. Kawasaki, Quan-Zhen Z. Li, Yuling Luo, Yunqing Ma, Nan Mei, Ron L. Peterson, Raj K. Puri, Richard Shippy, Zhenqiang Su, Yongming Andrew A. Sun, Hongmei Sun, Brett Thorn, Yaron Turpaz, Charles Wang, Sue Jane J. Wang, Janet A. Warrington, James C. Willey, Jie Wu, Qian Xie, Liang Zhang, Lu Zhang, Sheng Zhong, Russell D. Wolfinger, Weida Tong posted by 23 people bertelsen frohike bsamal maximilianh GustavoG mayercd Zephyrus daforerog oliviawi zufar bandrewfox lwaldron mdharsee shikin rdiaz jfr ugengma Bioinformatics dswan guhjy GeeSharpMinor ptrobajo Jonesy
	A robust statistical method for case-control association testing with copy number variation. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1245-1252. by Chris Barnes, Vincent Plagnol, Tomas Fitzgerald, et al.Richard Redon, Jonathan Marchini, David Clayton, Matthew E. Hurles posted by 18 people biovils daed zufar daforerog pengchy ptrobajo vplagnol waszak caseybrown Roswell Cancer Crosstalk Zephyrus dakelley buyske misonneh djkt rdiaz Stew guhjy
	A comparative study of survival models for breast cancer prognostication based on microarray data: does a single gene beat them all? [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 19. (1 October 2008), pp. 2200-2208. by B. Haibe-Kains, C. Desmedt, C. Sotiriou, G. Bontempi posted by 11 people zufar frohike provero jfr rdiaz sg45653 giovenko Breast Cancer Reading Club Zephyrus shigepong guhjy
	The Genomic Landscapes of Human Breast and Colorectal Cancers. [My Copy] Science (11 October 2007) by Laura D D. Wood, D Williams W. Parsons, Siân Jones, et al.Jimmy Lin, Tobias Sjöblom, Rebecca J J. Leary, Dong Shen, Simina M M. Boca, Thomas Barber, Janine Ptak, Natalie Silliman, Steve Szabo, Zoltan Dezso, Vadim Ustyanksky, Tatiana Nikolskaya, Yuri Nikolsky, Rachel Karchin, Paul A A. Wilson, Joshua S S. Kaminker, Zemin Zhang, Randal Croshaw, Joseph Willis, Dawn Dawson, Michail Shipitsin, James K V K. Willson, Saraswati Sukumar, Kornelia Polyak, Ben Ho H. Park, Charit L L. Pethiyagoda, P V Krishna V. Pant, Dennis G G. Ballinger, Andrew B B. Sparks, James Hartigan, Douglas R R. Smith, Erick Suh, Nickolas Papadopoulos, Phillip Buckhaults, Sanford D D. Markowitz, Giovanni Parmigiani, Kenneth W W. Kinzler, Victor E E. Velculescu, Bert Vogelstein posted by 20 people torfinnnome zufar ssgong daed guhjy tmmurali jfr rdiaz eisei ramensky massivemayhem bioyang cabbagezs xingxu shikin renatomilani VUMCGenomics gwenknight cerami srp33
	Mining gene expression profiles: expression signatures as cancer phenotypes [My Copy] Nature Reviews Genetics, Vol. 8, No. 8. (03 July 2007), pp. 601-609. by Joseph R. Nevins, Anil Potti posted by 20 people songpku ipark-kaist jmstat daforerog Scis0000002 zufar Roswell Cancer Crosstalk Zephyrus fhalbrit balicea misonneh srp33 jfr guhjy rdiaz giovanni cabbagezs GeschwindLab dbae minostro
	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. [My Copy] Nature, Vol. 447, No. 7145. (7 June 2007), pp. 661-678. by Wellcome Trust Case Control Consortium posted by 40 people ajbattle joseph_x_zhou rdiaz psique zufar mattwa daforerog ilyashl ekostem cchurc1 gruberjd Hans45 lkolodziej xingxu raistrick guhjy jfr yas hpiwowar larios vplagnol jandot frohike qmwwallace joepickrell massivemayhem Garamonfok PredictER hms jo_davies Bioinformatics T_lab caseybrown mcgannd parkinson's disease references raiyar ramensky wenhui balicea mfm11
	How to infer gene networks from expression profiles [My Copy] Mol Syst Biol, Vol. 3 (13 February 2007) by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo posted by 45 people jmstat sarikamehra frohike Jporci beete tonamswish zufar nicholasflann icq242500260 guhjy Zephyrus antonkratz phoenixzxl bertelsen isimpson daforerog poirel agonzale roys Neeperando APRegier rdiaz klo Borelli Jarman Lab ggallone ptrobajo druvus cswinburne jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet EBI-regulation Plantandetc heliopais mariakmejia tmmurali
	Relative impact of nucleotide and copy number variation on gene expression phenotypes. [My Copy] Science (New York, N.Y.), Vol. 315, No. 5813. (9 February 2007), pp. 848-853. by Barbara E. Stranger, Matthew S. Forrest, Mark Dunning, et al.Catherine E. Ingle, Claude Beazley, Natalie Thorne, Richard Redon, Christine P. Bird, Anna de Grassi, Charles Lee, Chris Tyler-Smith, Nigel Carter, Stephen W. Scherer, Simon Tavaré, Panagiotis Deloukas, Matthew E. Hurles, Emmanouil T. Dermitzakis posted by 38 people biovils lp2 daveGerrard sameersoi timhubbard Roswell Cancer Crosstalk Zephyrus ajbattle jonilaserson ilyashl emptyhb buyske zufar koller Visiting Position waszak daed psique jo_davies srp33 guhjy jfr dpollard balicea rdiaz qfwills djkt vplagnol shigepong jlangdon xingxu Bioinformatics EisenLab cisevol cis-regulatory-evolution caseybrown frohike jandot
	Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (26 July 2006), 359. by Ian Jeffery, Desmond Higgins, Aedin Culhane posted by 12 people zchen daforerog zufar mingzhi akastrin tg150 rdiaz jfr mayercd shikin bakakaj renatomilani
	Genome-Wide Associations of Gene Expression Variation in Humans [My Copy] PLoS Genet, Vol. 1, No. 6. (16 December 2005), e78. by Barbara E. Stranger, Matthew S. Forrest, Andrew G. Clark, et al.Mark J. Minichiello, Samuel Deutsch, Robert Lyle, Sarah Hunt, Brenda Kahl, Stylianos E. Antonarakis, Simon Tavaré, Panagiotis Deloukas, Emmanouil T. Dermitzakis posted by 15 people provero zufar pengchy psique adepace rdiaz qfwills noano ashandanj jo_davies Bioinformatics EisenLab cisevol cis-regulatory-evolution shikin
	ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets [My Copy] Genome Biology, Vol. 9, No. 11. (2008) by Patrick Killion, Vishwanath Iyer posted by 10 people jfr aramesh2 guhjy rdiaz pengchy lptolik barriot natstreet shikin druvus
	Advanced Genomic Data Mining [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000121. by Xosé M. Fernández-Suárez, Ewan Birney posted by 21 people Zephyrus mhamada daforerog kshameer jfr guhjy taguchi giovenko inesdesantiago usagi-kirin fgibson BergmanLab cisevol rdiaz aramesh2 sunhwan druvus mitko jandot jameswasmuth dullhunk
	Cancer-Specific High-Throughput Annotation of Somatic Mutations: Computational Prediction of Driver Missense Mutations [My Copy] Cancer Res, Vol. 69, No. 16. (15 August 2009), pp. 6660-6667. by Hannah Carter, Sining Chen, Leyla Isik, et al.Svitlana Tyekucheva, Victor E. Velculescu, Kenneth W. Kinzler, Bert Vogelstein, Rachel Karchin posted by 6 people zufar kshameer chrisamiller burak ericrpaquet frohike
	Development of biomarker classifiers from high-dimensional data [My Copy] Brief Bioinform, Vol. 10, No. 5. (1 September 2009), pp. 537-546. by Songjoon Baek, Chen-An Tsai, James J. Chen posted by 9 people zufar Orengo Group Journal Picks jperkins lwaldron brianb druvus nuin neils phoenixzxl
	Path: a tool to facilitate pathway-based genetic association analysis. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 18. (15 September 2009), pp. 2444-2446. by David Zamar, Ben Tripp, George Ellis, Denise Daley posted by 6 people zufar jamesmorris daforerog natstreet pkonings guhjy
	Estimation of gene induction enables a relevance-based ranking of gene sets. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 7. (July 2009), pp. 959-967. by Kilian Bartholomé, Clemens Kreutz, Jens Timmer posted by 1 person jfr
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	Ki67 index, HER2 status, and prognosis of patients with luminal B breast cancer. [My Copy] Journal of the National Cancer Institute, Vol. 101, No. 10. (20 May 2009), pp. 736-750. by Maggie C. Cheang, Stephen K. Chia, David Voduc, et al.Dongxia Gao, Samuel Leung, Jacqueline Snider, Mark Watson, Sherri Davies, Philip S. Bernard, Joel S. Parker, Charles M. Perou, Matthew J. Ellis, Torsten O. Nielsen posted by 2 people zufar jfr
	An empirical Bayesian approach for model-based inference of cellular signaling networks [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 371. by David Klinke posted by 5 people zufar karthikraman tonamswish cmzmasek renatomilani
	Concordant Regulation of Translation and mRNA Abundance for Hundreds of Targets of a Human microRNA [My Copy] PLoS Biol In PLoS Biol, Vol. 7, No. 11. (10 November 2009), e1000238. by David G. Hendrickson, Daniel J. Hogan, Heather L. McCullough, et al.Jason W. Myers, Daniel Herschlag, James E. Ferrell, Patrick O. Brown posted by 10 people zufar frohike microRNA heliopais hrogers valeriehilgers gbloeb daforerog giovenko ericsuh
	Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays [My Copy] Science (5 November 2009), 1181498. by Radoje Drmanac, Andrew B. Sparks, Matthew J. Callow, et al.Aaron L. Halpern, Norman L. Burns, Bahram G. Kermani, Paolo Carnevali, Igor Nazarenko, Geoffrey B. Nilsen, George Yeung, Fredrik Dahl, Andres Fernandez, Bryan Staker, Krishna P. Pant, Jonathan Baccash, Adam P. Borcherding, Anushka Brownley, Ryan Cedeno, Linsu Chen, Dan Chernikoff, Alex Cheung, Razvan Chirita, Benjamin Curson, Jessica C. Ebert, Coleen R. Hacker, Robert Hartlage, Brian Hauser, Steve Huang, Yuan Jiang, Vitali Karpinchyk, Mark Koenig, Calvin Kong, Tom Landers, Catherine Le, Jia Liu, Celeste E. McBride, Matt Morenzoni, Robert E. Morey, Karl Mutch, Helena Perazich, Kimberly Perry, Brock A. Peters, Joe Peterson, Charit L. Pethiyagoda, Kaliprasad Pothuraju, Claudia Richter, Abraham M. Rosenbaum, Shaunak Roy, Jay Shafto, Uladzislau Sharanhovich, Karen W. Shannon, Conrad G. Sheppy, Michel Sun, Joseph V. Thakuria, Anne Tran, Dylan Vu, Alexander W. Zaranek, Xiaodi Wu, Snezana Drmanac, Arnold R. Oliphant, William C. Banyai, Bruce Martin, Dennis G. Ballinger, George M. Church, Clifford A. Reid posted by 16 people psique dakelley JonD Journal picks qayub sandfire daforerog Peiyong chvlyl JamesBarger natstreet heliopais rwst orzenil zufar frohike
	Predicting new molecular targets for known drugs. [My Copy] Nature In Nature, Vol. 462, No. 7270. (12 November 2009), pp. 175-181. by Michael J. Keiser, Vincent Setola, John J. Irwin, et al.Christian Laggner, Atheir I. Abbas, Sandra J. Hufeisen, Niels H. Jensen, Michael B. Kuijer, Roberto C. Matos, Thuy B. Tran, Ryan Whaley, Richard A. Glennon, Jérôme Hert, Kelan L. Thomas, Douglas D. Edwards, Brian K. Shoichet, Bryan L. Roth posted by 24 people agomez guhjy hmx fernan renatomilani McCammon barry flbarroso venancio okapi Journal picks ahmetbakan zufar pablocarb zwang TRHvidsten phoenixzxl qshao Yanno mnishimu tmmurali sjcockell seb1 abhishek_tiwari