Dan Pollard's Top Recommendations

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	Evolution of genes and genomes on the Drosophila phylogeny [My Copy] Nature, Vol. 450, No. 7167. (08 November 2007), pp. 203-218. posted by 42 people biomcgary nuttpo daveGerrard Anachff GustavoLacerda mqbphcw3 rpetrenko gwallau chica jlncdr aprasad gjuggler lizbiogen jbsaltz druvus pradiptaray pengchy operon tmmurali indigoviolet djkt timflutre stajich zwang Garamonfok lp2 Bioinformatics EisenLab CharlesM hpaces caseybrown emptyhb urgi Mycology noor PetrovLab isimpson balicea cisevol BergmanLab Drosophila-Genetics-Genomics-2008 hdopazo
	Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. [My Copy] Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050. by A. Siepel, G. Bejerano, J. S. Pedersen, et al.A. S. Hinrichs, M. Hou, K. Rosenbloom, H. Clawson, J. Spieth, L. W. Hillier, S. Richards, G. M. Weinstock, R. K. Wilson, R. A. Gibbs, W. J. Kent, W. Miller, D. Haussler posted by 25 people thegoose2 farhat skembel alessandroparini C. elegans / WormBase tharris bpb aprasad balajis eckart_bindewald indigoviolet brant pradiptaray adepace djkt olympos sujaikumar Stew EisenLab cisevol cis-regulatory-evolution dmc elfar AlexanderPico ConklinLab
	Adaptive evolution of non-coding DNA in Drosophila [My Copy] Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1149-1152. by Peter Andolfatto posted by 23 people gregoryross emptyhb timflutre provero tkmaia rouault stevanspringer bpb aprasad jmeppley balicea jimmithy emilyhare cdawson adepace pradiptaray Stew mimulus_99 EisenLab FAB-lab GIG cisevol cis-regulatory-evolution
	Genetic properties influencing the evolvability of gene expression. [My Copy] Science (New York, N.Y.), Vol. 317, No. 5834. (6 July 2007), pp. 118-121. by Christian R. Landry, Bernardo Lemos, Scott A. Rifkin, W. J. Dickinson, Daniel L. Hartl posted by 16 people daveGerrard BergmanLab dbensasson jjray brant balicea sebastien_vigneau grahamc emarker EisenLab heliopais cisevol cis-regulatory-evolution caseybrown emptyhb klo
	Highly conserved non-coding sequences are associated with vertebrate development. [My Copy] PLoS Biol, Vol. 3, No. 1. (January 2005) by A. Woolfe, M. Goodson, D. K. Goode, et al.P. Snell, G. K. McEwen, T. Vavouri, S. F. Smith, P. North, H. Callaway, K. Kelly, K. Walter, I. Abnizova, W. Gilks, Y. J. Edwards, J. E. Cooke, G. Elgar posted by 16 people BergmanLab daveGerrard aprasad diamantis nklee bryankr awoolfe djkt sujaikumar Stew EisenLab maximilianh cisevol cis-regulatory-evolution rrhudson gelgar
	BLAT--the BLAST-like alignment tool. [My Copy] Genome research, Vol. 12, No. 4. (1 April 2002), pp. 656-664. by W. James Kent posted by 41 people azazello rshe dchughes rdowell LabDros gwallau druvus aprasad maria_hauser n00c sficklin Thaverkamp cpwardell BergmanLab daveGerrard coela daforerog pwais umit mmartin paszkows operon miguel pcahan1 Ayest indigoviolet mtagaya treangen michC djkt timflutre olympos cjeans wenhan natstreet antonkratz EisenLab yoanjacquemin talponer bozdagd gpappas
	Large-scale turnover of functional transcription factor binding sites in Drosophila. [My Copy] PLoS Comput Biol, Vol. 2, No. 10. (October 2006) by A. M. Moses, D. A. Pollard, D. A. Nix, et al.V. N. Iyer, X. Y. Li, M. D. Biggin, M. B. Eisen posted by 9 people caseybrown adepace eukfn lusk EisenLab maximilianh cisevol cis-regulatory-evolution emptyhb
	A genetic signature of interspecies variations in gene expression. [My Copy] Nature genetics, Vol. 38, No. 7. (18 July 2006), pp. 830-834. by Itay Tirosh, Adina Weinberger, Miri Carmi, Naama Barkai posted by 13 people roys BergmanLab daveGerrard cabbagezs cis-regulatory-evolution cisevol adepace nickluscombe aswin cjeans EisenLab EBI-regulation caseybrown
	Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. [My Copy] Journal of molecular biology, Vol. 193, No. 4. (20 February 1987), pp. 723-750. by O. G. Berg, P. H. von Hippel posted by 12 people mox emptyhb jjray indigoviolet lusk discreteonyxorb EisenLab cisevol cis-regulatory-evolution Ema brant zambujo
	Conservation of RET Regulatory Function from Human to Zebrafish Without Sequence Similarity. [My Copy] Science (23 March 2006) by Shannon Fisher, Elizabeth A A. Grice, Ryan M M. Vinton, Seneca L L. Bessling, Andrew S S. McCallion posted by 9 people aprasad adepace nickluscombe EisenLab EBI-regulation maximilianh cisevol cis-regulatory-evolution emptyhb
	Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. [My Copy] Genome Res, Vol. 15, No. 1. (January 2005), pp. 1-18. by S. Richards, Y. Liu, B. R. Bettencourt, et al.P. Hradecky, S. Letovsky, R. Nielsen, K. Thornton, M. J. Hubisz, R. Chen, R. P. Meisel, O. Couronne, S. Hua, M. A. Smith, P. Zhang, J. Liu, H. J. Bussemaker, M. F. van Batenburg, S. L. Howells, S. E. Scherer, E. Sodergren, B. B. Matthews, M. A. Crosby, A. J. Schroeder, D. Ortiz-Barrientos, C. M. Rives, M. L. Metzker, D. M. Muzny, G. Scott, D. Steffen, D. A. Wheeler, K. C. Worley, P. Havlak, K. J. Durbin, A. Egan, R. Gill, J. Hume, M. B. Morgan, G. Miner, C. Hamilton, Y. Huang, L. Waldron, D. Verduzco, K. P. Clerc-Blankenburg, I. Dubchak, M. A. Noor, W. Anderson, K. P. White, A. G. Clark, S. W. Schaeffer, W. Gelbart, G. M. Weinstock, R. A. Gibbs posted by 14 people alhufton briann tsackton jshapiro operon indigoviolet penka adepace emptyhb EisenLab Nie cisevol cis-regulatory-evolution skumagai
	Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura. [My Copy] Genome Biol, Vol. 5, No. 9. (2004) by B. P. Berman, B. D. Pfeiffer, T. R. Laverty, et al.S. L. Salzberg, G. M. Rubin, M. B. Eisen, S. E. Celniker posted by 13 people emptyhb cajunsushi mbeisen indigoviolet adepace Stew nklee EisenLab cisevol cis-regulatory-evolution maximilianh Auger Dead 60's
	Adaptive Evolution of Conserved Noncoding Elements in Mammals [My Copy] PLoS Genetics, Vol. 3, No. 9. (1 September 2007), e147. by Su Y. Kim, Jonathan K. Pritchard posted by 17 people sujaikumar sriesenfeld mattjb livingthingdan djkt stajich Garamonfok cabbagezs Stew EisenLab ComplexAdaptiveSystems DSTO-CAS livingthing cisevol cis-regulatory-evolution rrhudson bpcusack
	Genome-wide identification of human functional DNA using a neutral indel model. [My Copy] PLoS computational biology, Vol. 2, No. 1. (13 January 2006) by Gerton Lunter, Chris P. Ponting, Jotun Hein posted by 15 people timflutre gjuggler nklee aprasad eckart_bindewald eweaver lhonigberg acidwizard juliettecolinas bpcusack Stew EisenLab cisevol cis-regulatory-evolution mailund
	Evolution of alternative transcriptional circuits with identical logic [My Copy] Nature, Vol. 443, No. 7110. (28 September 2006), pp. 415-420. by Annie E. Tsong, Brian B. Tuch, Hao Li, Alexander D. Johnson posted by 14 people biomcgary cmzmasek balabu marcius brant adepace aswin srfairclough EisenLab BioinfoCIPF SGU-CIPF cisevol cis-regulatory-evolution emptyhb
	Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change. [My Copy] Development, Vol. 125, No. 5. (March 1998), pp. 949-958. by M. Z. Ludwig, N. H. Patel, M. Kreitman posted by 7 people lusk adepace EisenLab cisevol cis-regulatory-evolution emptyhb brant
	Evolution of developmental genes: molecular microevolution of enhancer sequences at the Ubx locus in Drosophila and its impact on developmental phenotypes. [My Copy] Molecular biology and evolution, Vol. 21, No. 2. (February 2004), pp. 348-363. by J. Phinchongsakuldit, S. MacArthur, J. F. Brookfield posted by 7 people lusk Stew adepace EisenLab cisevol cis-regulatory-evolution emptyhb
	Fast-evolving non-coding sequences in the human genome [My Copy] Genome Biology, Vol. 8 (19 June 2007), R118. by Christine P. Bird, Barbara E. Stranger, Maureen Liu, et al.Daryl J. Thomas, Catherine E. Ingle, Claude Beazley, Webb Miller, Matthew E. Hurles, Emmanouil T. Dermitzakis posted by 11 people balicea sriesenfeld xianjun djkt Stew jlangdon EisenLab cisevol cis-regulatory-evolution iris42 bpcusack
	Evolution of Transcription Factor Binding Sites in Mammalian Gene Regulatory Regions: Conservation and Turnover [My Copy] Mol Biol Evol, Vol. 19, No. 7. (1 July 2002), pp. 1114-1121. by Emmanouil T. Dermitzakis, Andrew G. Clark posted by 9 people fenghezi pradiptaray provero adepace EisenLab cisevol cis-regulatory-evolution emptyhb xili03
	A probabilistic method to detect regulatory modules. [My Copy] Bioinformatics, Vol. 19 Suppl 1 (2003) by S. Sinha, E. van Nimwegen, E. D. Siggia posted by 7 people maximilianh indigoviolet dquest lusk EisenLab cisevol cis-regulatory-evolution
	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by Michael Ashburner, Catherine A. Ball, Judith A. Blake, et al.David Botstein, Heather Butler, J. Michael Cherry, Allan P. Davis, Kara Dolinski, Selina S. Dwight, Janan T. Eppig, Midori A. Harris, David P. Hill, Laurie Issel-Tarver, Andrew Kasarskis, Suzanna Lewis, John C. Matese, Joel E. Richardson, Martin Ringwald, Gerald M. Rubin, Gavin Sherlock posted by 82 people Jporci artaban421 mtaschuk niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick BTS-PT-AS-CS vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele kdl Bioinformatics EisenLab T_lab biomedical-nlp CitoJam pablomendes carlk marck dgront roys rvosa FAB-lab fongenae
	The Origins of Eukaryotic Gene Structure [My Copy] Mol Biol Evol, Vol. 23, No. 2. (1 February 2006), pp. 450-468. by Michael Lynch posted by 37 people operon BergmanLab daveGerrard inesdesantiago Ema karbak stevanspringer dayjm Ayest indigoviolet tny xwbcn dchughes petecl penka mtagaya madhadron cmm brixtonmc zhangli msierk brettc web20student BioNica krishnaJCSG timflutre jwestbrook EisenLab Computational_Systems_Biology Nie FAB-lab G4ID Bioinformatics_MDACC evo-devo King_Lab Genetics-of-Gambling ArtemPankin
	A Map of Recent Positive Selection in the Human Genome. [My Copy] PLoS Biol, Vol. 4, No. 3. (7 March 2006) by Benjamin F F. Voight, Sridhar Kudaravalli, Xiaoquan Wen, Jonathan K K. Pritchard posted by 32 people athma ilyashl renewang diamantis stevanspringer kentsis bpb balajis indigoviolet ejeffery pradiptaray madhadron breden tiago larios ashandanj hdopazo livingthingdan djkt mbeautru grahamc suizan shoshin Bioinformatics EisenLab FAB-lab SFUAntibodyResearch BioinfoCIPF livingthing iris42 dmc Durbin group
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted by 84 people VGreiff richter80 krapnik azazello rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin C. elegans / WormBase tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology Thaverkamp shung marti ashaytan benwei granujilla
	Genome-wide associations of gene expression variation in humans. [My Copy] PLoS Genet, Vol. 1, No. 6. (December 2005) by B. E. Stranger, M. S. Forrest, A. G. Clark, et al.M. J. Minichiello, S. Deutsch, R. Lyle, S. Hunt, B. Kahl, S. E. Antonarakis, S. Tavaré, P. Deloukas, E. T. Dermitzakis posted by 14 people zufar pengchy psique adepace rdiaz qfwills noano ashandanj jo_davies Bioinformatics EisenLab cisevol cis-regulatory-evolution shikin
	Conserved noncoding sequences are selectively constrained and not mutation cold spots [My Copy] Nature Genetics, Vol. 38, No. 2. (25 December 2005), pp. 223-227. by Jared A. Drake, Christine Bird, James Nemesh, et al.Daryl J. Thomas, Christopher Newton-Cheh, Alexandre Reymond, Laurent Excoffier, Homa Attar, Stylianos E. Antonarakis, Emmanouil T. Dermitzakis, Joel N. Hirschhorn posted by 11 people daforerog provero xianjun aprasad ccots ashandanj Stew EisenLab cisevol cis-regulatory-evolution bpcusack
	Evolution of candidate transcriptional regulatory motifs since the human-chimpanzee divergence [My Copy] Genome Biology, Vol. 7 (29 June 2006), R52. by Ian J. Donaldson, Berthold Göttgens posted by 9 people mox provero indigoviolet ranb djkt EisenLab cisevol cis-regulatory-evolution idonaldson
	Genome-wide Prediction of Mammalian Enhancers Based on Analysis of Transcription-Factor Binding Affinity [My Copy] Cell, Vol. 124, No. 1. (13 January 2006), pp. 47-59. by O. Hallikas, K. Palin, N. Sinjushina, et al.R. Rautiainen, J. Partanen, E. Ukkonen, J. Taipale posted by 22 people absterga xingxu cisstem Terkko kaarsinogen tuck brant xwbcn dchughes nickluscombe olympos cabbagezs karfunkel Bioinformatics EisenLab G4ID EBI-regulation Genetics-of-Gambling maximilianh heliopais oelemento emptyhb
	Detecting natural selection on cis-regulatory DNA [My Copy] Genetica, Vol. 129, No. 1. (January 2007), pp. 7-18. by Hahn, Matthew posted by 7 people provero Zephyrus adepace EisenLab cisevol cis-regulatory-evolution emptyhb
	MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model. [My Copy] Genome Biol, Vol. 5, No. 12. (2004) by A. M. Moses, D. Y. Chiang, D. A. Pollard, V. N. Iyer, M. B. Eisen posted by 7 people tuck indigoviolet lusk Garamonfok EisenLab cisevol cis-regulatory-evolution
	Aligning multiple genomic sequences with the threaded blockset aligner. [My Copy] Genome research, Vol. 14, No. 4. (April 2004), pp. 708-715. by Mathieu Blanchette, W. James Kent, Cathy Riemer, et al.Laura Elnitski, Arian F. Smit, Krishna M. Roskin, Robert Baertsch, Kate Rosenbloom, Hiram Clawson, Eric D. Green, David Haussler, Webb Miller posted by 15 people roys emptyhb nuin aprasad APRegier operon ujh indigoviolet csardas djkt EisenLab yylin Neeperando maralena AlexanderPico
	Evolutionary analysis of the well characterized endo16 promoter reveals substantial variation within functional sites. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 24. (14 June 2005), pp. 8591-8596. by J. P. Balhoff, G. A. Wray posted by 6 people gderwin adepace EisenLab cisevol cis-regulatory-evolution emptyhb
	Phylogeny based discovery of regulatory elements. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by J. Gertz, J. C. Fay, B. A. Cohen posted by 7 people pradiptaray druvus indigoviolet dquest EisenLab cisevol cis-regulatory-evolution
	Deletion of Ultraconserved Elements Yields Viable Mice [My Copy] PLoS Biol, Vol. 5, No. 9. (4 September 2007), e234. by Nadav Ahituv, Yiwen Zhu, Axel Visel, et al.Amy Holt, Veena Afzal, Len A. Pennacchio, Edward M. Rubin posted by 14 people galka8_diploma aprasad balicea dchughes cwbrown djkt lp2 cabbagezs Stew EisenLab G4ID Genetics-of-Gambling gjuggler bpcusack
	The evolution of gene regulation by transcription factors and microRNAs [My Copy] Nature Reviews Genetics, Vol. 8, No. 2. (01 February 2007), pp. 93-103. by Kevin Chen, Nikolaus Rajewsky posted by 29 people heliopais guhjy antonkratz qfwills vvoorr aprasad jfr indigoviolet tardigrade andersbj dchughes emilyhare penka cdawson aswin plofje dbikard joepickrell Garamonfok EeHawk3 jayster4 EisenLab microRNA Nie GIG dandaman maralena bootsy robertkofler
	Assessing performance of orthology detection strategies applied to eukaryotic genomes. [My Copy] PLoS ONE, Vol. 2 (2007) by F. Chen, A. J. Mackey, J. K. Vermunt, D. S. Roos posted by 18 people richardbickerton treangen dquest cgaugain druvus icases operon rvosa indigoviolet stajich cjeans winterschlaefer EisenLab FAB-lab TNT bpcusack cerca natstreet
	A genomic code for nucleosome positioning [My Copy] Nature, Vol. 442, No. 7104. (17 August 2006), pp. 772-778. by Eran Segal, Yvonne Fondufe-Mittendorf, Lingyi Chen, et al.Annchristine Thastrom, Yair Field, Irene K. Moore, Ji-Ping Z. Wang, Jonathan Widom posted by 30 people TRHvidsten hagechouchin443 natstreet dakelley kentsis aalibes alokm marcius indigoviolet dchughes cconboy neveaire kengg johncumbers joshuashen joepickrell GustavoLacerda Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience G4ID BioinfoCIPF SGU-CIPF Plantandetc Genetics-of-Gambling rschulz inesdesantiago sonjadaniela
	Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo. [My Copy] BMC Bioinformatics, Vol. 3 (24 October 2002) by N. Rajewsky, M. Vergassola, U. Gaul, E. D. Siggia posted by 11 people BergmanLab daveGerrard maximilianh isimpson ansobol indigoviolet adepace koller Stew EisenLab csdhwang
	Comparative analysis indicates regulatory neofunctionalization of yeast duplicates [My Copy] Genome Biology, Vol. 8, No. 4. (05 April 2007), R50. by Itay Tirosh, Naama Barkai posted by 8 people azazello ptrobajo adepace stajich EisenLab cisevol cis-regulatory-evolution ajpowell
	Inference of Positive and Negative Selection on the 5' Regulatory Regions of Drosophila Genes [My Copy] Mol Biol Evol, Vol. 21, No. 2. (1 February 2004), pp. 374-383. by Michael H. Kohn, Shu Fang, Chung-I Wu posted by 5 people Garamonfok adepace EisenLab cisevol cis-regulatory-evolution
	Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs [My Copy] Genome Res., Vol. 17, No. 5. (1 May 2007), pp. 556-565. by Jasmina Ponjavic, Chris P. Ponting, Gerton Lunter posted by 11 people aprasad alexg dchughes djkt Stew Bioinformatics EisenLab G4ID Genetics-of-Gambling elfar bpcusack
	Applied bioinformatics for the identification of regulatory elements. [My Copy] Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 276-287. by W. W. Wasserman, A. Sandelin posted by 27 people wowalz yas icases ana chad_davis moborg gpalidwor dchughes nickluscombe johncumbers giovanni xiaobeizhao bertelsen Stew nklee structural_bioinformatics Bioinformatics EisenLab G4ID EBI-regulation GeschwindLab TNT Genetics-of-Gambling jdiezperezj ArtemPankin mariakmejia isimpson
	Structural variation in the human genome [My Copy] Nature Reviews Genetics, Vol. 7, No. 2. (01 February 2006), pp. 85-97. by Lars Feuk, Andrew R. Carson, Stephen W. Scherer posted by 37 people ajbattle bertelsen baizhang APRegier Neeperando xingxu daforerog psique Zephyrus GEB dlobo jandot cgreal balajis bala balicea dchughes tabu darcyduke adepace AaronDarling rdiaz massivemayhem cat_worth jmrivort ccr Lip CGREL structural_bioinformatics Bioinformatics EisenLab SFX-Verde-team-MITLibraries G4ID G-quadruplex Supramolecular DictyosteliumGroup Genetics-of-Gambling
	Expected rates and modes of evolution of enhancer sequences. [My Copy] Molecular biology and evolution, Vol. 21, No. 6. (June 2004), pp. 1064-1073. by S. MacArthur, J. F. Brookfield posted by 5 people Stew adepace EisenLab cisevol cis-regulatory-evolution
	OrthoMCL: identification of ortholog groups for eukaryotic genomes. [My Copy] Genome research, Vol. 13, No. 9. (September 2003), pp. 2178-2189. by Li Li, Christian J. Stoeckert, David S. Roos posted by 18 people GustavoLacerda biomcgary sjcockell thegoose2 nlapalu dullhunk natstreet druvus C. elegans / WormBase tharris mdimmic operon indigoviolet AaronDarling bluto EisenLab maximilianh ninch
	Striking nucleotide frequency pattern at the borders of highly conserved vertebrate non-coding sequences. [My Copy] Trends Genet, Vol. 21, No. 8. (August 2005), pp. 436-440. by K. Walter, I. Abnizova, G. Elgar, W. R. Gilks posted by 5 people aprasad Stew EisenLab cisevol cis-regulatory-evolution
	Systematic discovery of regulatory motifs in human promoters and 3[prime] UTRs by comparison of several mammals [My Copy] Nature, Vol. aop, No. current. (27 February 2005) by Xiaohui Xie, Jun Lu, E. J. Kulbokas, et al.Todd R. Golub, Vamsi Mootha, Kerstin Lindblad-Toh, Eric S. Lander, Manolis Kellis posted by 33 people Dulce wowalz maximilianh_otx hagechouchin443 sterovetta kieran101 snuppepuppan BioGeek briann jtextori tmmurali okarsligil jfr balajis lyongu eckart_bindewald mtagaya adepace fisherp nickluscombe panetebrother smiddha franklin oscarluoinau Bioinformatics EisenLab microRNA EBI-regulation heliopais ale emptyhb maralena mariakmejia
	Evolution of gene expression in the Drosophila melanogaster subgroup. [My Copy] Nat Genet, Vol. 33, No. 2. (February 2003), pp. 138-144. by S. A. Rifkin, J. Kim, K. P. White posted by 8 people BergmanLab daveGerrard adepace eukfn emarker EisenLab caseybrown emptyhb
	A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types [My Copy] Molecular Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350. by Olivier Elemento, Noam Slonim, Saeed Tavazoie posted by 20 people cerca ilyashl TRHvidsten leelarcombe kieran101 ana brant cwbrown aswin cjeans zwang cabbagezs nklee EisenLab maximilianh idonaldson sb_journal_club kristen barwil Motif Discovery
	The nucleotide changes governing cuticular hydrocarbon variation and their evolution in Drosophila melanogaster [My Copy] PNAS, Vol. 98, No. 7. (27 March 2001), pp. 3920-3925. by Aya Takahashi, Shun-Chern Tsaur, Jerry A. Coyne, Chung-I Wu posted by 5 people RMGraze adepace EisenLab cisevol cis-regulatory-evolution
	Large-Scale Trends in the Evolution of Gene Structures within 11 Animal Genomes. [My Copy] PLoS Comput Biol, Vol. 2, No. 3. (3 March 2006) by Mark Yandell, Chris J J. Mungall, Chris Smith, et al.Simon Prochnik, Joshua Kaminker, George Hartzell, Suzanna Lewis, Gerald M M. Rubin posted by 6 people daveGerrard BergmanLab cisevol druvus indigoviolet EisenLab
	Human-mouse genome comparisons to locate regulatory sites. [My Copy] Nat Genet, Vol. 26, No. 2. (October 2000), pp. 225-228. by W. W. Wasserman, M. Palumbo, W. Thompson, J. W. Fickett, C. E. Lawrence posted by 4 people adepace EisenLab cisevol cis-regulatory-evolution
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted by 74 people rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser jbhiatt yylin mgomes BioNica idoerg pjcite swp09 kgutwin mcbla cpwardell References for 3DSim paper johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 EisenLab biomedical-nlp Microbial-Ecology Plantandetc mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM
	Coevolution in bicoid-dependent promoters and the inception of regulatory incompatibilities among species of higher Diptera. [My Copy] Evol Dev, Vol. 4, No. 4. (g 2002), pp. 265-277. by P. J. Shaw, N. S. Wratten, A. P. McGregor, G. A. Dover posted by 4 people adepace EisenLab cisevol cis-regulatory-evolution
	Rapid evolution of cis-regulatory sequences via local point mutations. [My Copy] Mol Biol Evol, Vol. 18, No. 9. (September 2001), pp. 1764-1770. by J. R. Stone, G. A. Wray posted by 4 people adepace EisenLab cisevol cis-regulatory-evolution
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	The function and regulation of Ultrabithorax in the legs of Drosophila melanogaster. [My Copy] Dev Biol (12 June 2007) by Gregory K K. Davis, Dayalan G G. Srinivasan, Patricia J J. Wittkopp, David L L. Stern posted by 4 people Stew EisenLab cisevol cis-regulatory-evolution
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