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	13C-based metabolic flux analysis [My Copy] Nat. Protocols, Vol. 4, No. 6. (May 2009), pp. 878-892. by Nicola Zamboni, Sarah-Maria Fendt, Martin Ruhl, Uwe Sauer posted by 1 person kukki
	Ensemble modeling for strain development of l-lysine-producing Escherichia coli [My Copy] Metabolic Engineering (18 April 2009) by Carolina A. Contador, Matthew L. Rizk, Juan A. Asenjo, James C. Liao posted by 1 person kukki
	Metabolic flux engineering of l-lysine production in Corynebacterium glutamicum—over expression and modification of G6P dehydrogenase [My Copy] Journal of Biotechnology, Vol. 132, No. 2. (31 October 2007), pp. 99-109. by J. Becker, C. Klopprogge, A. Herold, O. Zelder, C. Bolten, C. Wittmann posted by 1 person kukki
	Modeling and experimental validation of the signal transduction via the Escherichia coli sucrose phospho transferase system [My Copy] Journal of Biotechnology, Vol. 110, No. 2. (27 May 2004), pp. 181-199. by T. Sauter posted by 1 person kukki
	Metabolic flux distributions in <I>Corynebacterium glutamicum</I> during growth and lysine overproduction [My Copy] Biotechnology and Bioengineering, Vol. 67, No. 6. (2000), pp. 872-885. by Joseph J. Vallino, Gregory Stephanopoulos posted by 1 person kukki
	Network rigidity and metabolic engineering in metabolite overproduction. [My Copy] Science (New York, N.Y.), Vol. 252, No. 5013. (21 June 1991), pp. 1675-1681. by G. Stephanopoulos, J. J. Vallino posted by 1 person kukki
	Systems Metabolic Engineering [My Copy] Research in Computational Molecular Biology (2008), pp. 196-196. by Sang Lee posted by 1 person kukki
	Emerging Corynebacterium glutamicum systems biology [My Copy] Journal of Biotechnology, Vol. 124, No. 1. (25 June 2006), pp. 74-92. by V. Wendisch, M. Bott, J. Kalinowski, M. Oldiges, W. Wiechert posted by 1 person kukki
	A genome-based approach to create a minimally mutated Corynebacterium glutamicum strain for efficient l -lysine production [My Copy] Journal of Industrial Microbiology and Biotechnology, Vol. 33, No. 7. (1 July 2006), pp. 610-615. by Masato Ikeda, Junko Ohnishi, Mikiro Hayashi, Satoshi Mitsuhashi posted by 1 person kukki
	Improvement of Galactose Uptake in Saccharomyces cerevisiae through Overexpression of Phosphoglucomutase: Example of Transcript Analysis as a Tool in Inverse Metabolic Engineering [My Copy] Appl. Environ. Microbiol., Vol. 71, No. 11. (1 November 2005), pp. 6465-6472. by Christoffer Bro, Steen Knudsen, Birgitte Regenberg, Lisbeth Olsson, Jens Nielsen posted by 1 person kukki
	Lessons from metabolic engineering for functional genomics and drug discovery [My Copy] Nat Biotech, Vol. 17, No. 7. (July 1999), pp. 616-618. by James E. Bailey posted by 1 person kukki
	In silico genome-scale reconstruction and validation of the Corynebacterium glutamicum metabolic network. [My Copy] Biotechnology and bioengineering, Vol. 102, No. 2. (1 February 2009), pp. 583-597. by K. R. Kjeldsen, J. Nielsen posted by 4 people kukki JeremyZucker MetabolicModeling jholder
	Uncovering transcriptional regulation of metabolism by using metabolic network topology [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 8. (22 February 2005), pp. 2685-2689. by Kiran R. Patil, Jens Nielsen posted by 4 people kukki alexg raiyar steinmetzlab
	Multiple regulatory elements direct the complex expression pattern of the Drosophila segmentation gene paired. [My Copy] Mechanisms of development, Vol. 48, No. 2. (November 1994), pp. 119-128. by T. Gutjahr, C. E. Vanario-Alonso, L. Pick, M. Noll posted by 1 person jrvalcourt
	Bicoid by the Numbers: Quantifying a Morphogen Gradient [My Copy] Cell, Vol. 130, No. 1. (13 July 2007), pp. 14-16. by M. Gibson posted by 1 person jrvalcourt
	Different ways to make a head. [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 23, No. 1. (January 2001), pp. 8-11. by U. Schmidt-Ott posted by 1 person jrvalcourt
	Mechanisms of change in gene copy number [My Copy] Nature Reviews Genetics, Vol. 10, No. 8. (01 August 2009), pp. 551-564. by P. J. Hastings, James R. Lupski, Susan M. Rosenberg, Grzegorz Ira posted by 15 people biovils Zephyrus sameersoi xingxu qayub nicolesoranzo pkonings jandot rdiaz misonneh fenghezi daforerog Journal picks ppgardne psique
	A novel human protein of the maternal centriole is required for the final stages of cytokinesis and entry into S phase. [My Copy] The Journal of cell biology, Vol. 161, No. 3. (12 May 2003), pp. 535-545. by A. Gromley, A. Jurczyk, J. Sillibourne, et al.E. Halilovic, M. Mogensen, I. Groisman, M. Blomberg, S. Doxsey posted by 1 person jrvalcourt
	Understanding what determines the frequency and pattern of human germline mutations [My Copy] Nat Rev Genet, Vol. 10, No. 7. (2 July 2009), pp. 478-488. by Norman Arnheim, Peter Calabrese posted by 4 people jandot jrvalcourt pkonings daforerog
	A note on exact tests of Hardy-Weinberg equilibrium. [My Copy] American journal of human genetics, Vol. 76, No. 5. (May 2005), pp. 887-893. by Janis E. Wigginton, David J. Cutler, Goncalo R. Abecasis posted by 1 person daforerog
	Chromosome instability is common in human cleavage-stage embryos. [My Copy] Nature medicine, Vol. 15, No. 5. (May 2009), pp. 577-583. by E. Vanneste, T. Voet, C. Le Caignec, et al.M. Ampe, P. Konings, C. Melotte, S. Debrock, M. Amyere, M. Vikkula, F. Schuit, J. P. Fryns, G. Verbeke, T. D'Hooghe, Y. Moreau, J. R. Vermeesch posted by 2 people jrvalcourt leliavski
	PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data [My Copy] Genome Biology, Vol. 10, No. 2. (23 February 2009), R23. by Jan Korbel, Alexej Abyzov, Xinmeng Mu, et al.Nicholas Carriero, Philip Cayting, Zhengdong Zhang, Michael Snyder, Mark Gerstein posted by 12 people orzenil adthrasher jessopher jrvalcourt dakelley Neeperando APRegier smiddha natstreet djkt poschm druvus
	Centriolin anchoring of exocyst and SNARE complexes at the midbody is required for secretory-vesicle-mediated abscission. [My Copy] Cell, Vol. 123, No. 1. (7 October 2005), pp. 75-87. by A. Gromley, C. Yeaman, J. Rosa, et al.S. Redick, C. T. Chen, S. Mirabelle, M. Guha, J. Sillibourne, S. J. Doxsey posted by 2 people jrvalcourt laurabailey
	Accuracy of direct gradient sensing by single cells [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 41. (14 October 2008), pp. 15749-15754. by Robert G. Endres, Ned S. Wingreen posted by 3 people jrvalcourt vladimirov kshundyak
	The Role of Input Noise in Transcriptional Regulation [My Copy] PLoS ONE, Vol. 3, No. 7. (23 July 2008), e2774. by Gašper Tkačik, Thomas Gregor, William Bialek posted by 2 people jrvalcourt erel10
	GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis [My Copy] Nucl. Acids Res., Vol. 36, No. suppl_2. (1 July 2008), pp. W358-363. by Qi Zheng, Xiu-Jie Wang posted by 2 people carlk guhjy
	The current excitement about copy-number variation: how it relates to gene duplications and protein families. [My Copy] Current opinion in structural biology, Vol. 18, No. 3. (27 June 2008), pp. 366-374. by J. O. Korbel, P. M. Kim, X. Chen, et al.A. E. Urban, S. Weissman, M. Snyder, M. B. Gerstein posted by 8 people biovils jrvalcourt bcondon klo bandrewfox cabbagesofdoom Neeperando bpcusack
	Systematic prediction and validation of breakpoints associated with copy-number variants in the human genome. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 24. (12 June 2007), pp. 10110-10115. by J. O. Korbel, A. E. Urban, F. Grubert, et al.J. Du, T. E. Royce, P. Starr, G. Zhong, B. S. Emanuel, S. M. Weissman, M. Snyder, M. B. Gerstein posted by 4 people jrvalcourt waszak caldavis oelemento
	Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome [My Copy] Science, Vol. 318, No. 5849. (19 October 2007), pp. 420-426. by Jan O. Korbel, Alexander E. Urban, Jason P. Affourtit, et al.Brian Godwin, Fabian Grubert, Jan F. Simons, Philip M. Kim, Dean Palejev, Nicholas J. Carriero, Lei Du, Bruce E. Taillon, Zhoutao Chen, Andrea Tanzer, A. C. Eugenia Saunders, Jianxiang Chi, Fengtang Yang, Nigel P. Carter, Matthew E. Hurles, Sherman M. Weissman, Timothy T. Harkins, Mark B. Gerstein, Michael Egholm, Michael Snyder posted by 25 people torfinnnome Journal picks jandot n00c jonilaserson jrvalcourt APRegier jessopher hpaces Zephyrus pkonings orzenil stuetz matthewsuderman dpollard dchughes AaronDarling rdiaz giovanni jlangdon EisenLab annacarina07 Neeperando jfr caseybrown
	Mutations affecting segment number and polarity in Drosophila. [My Copy] Nature, Vol. 287, No. 5785. (30 October 1980), pp. 795-801. by C. Nüsslein-Volhard, E. Wieschaus posted by 3 people jrvalcourt adepace EisenLab
	Global variation in copy number in the human genome [My Copy] Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454. by Richard Redon, Shumpei Ishikawa, Karen R. Fitch, et al.Lars Feuk, George H. Perry, T. Daniel Andrews, Heike Fiegler, Michael H. Shapero, Andrew R. Carson, Wenwei Chen, Eun K. Cho, Stephanie Dallaire, Jennifer L. Freeman, Juan R. Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R. MacDonald, Christian R. Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J. Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F. Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P. Carter, Hiroyuki Aburatani, Charles Lee, Keith W. Jones, Stephen W. Scherer, Matthew E. Hurles posted by 49 people sameersoi lp2 ilyashl ajbattle darian jonilaserson jrvalcourt turnersd guhjy daforerog noushin Glires ivanek waszak jo_davies parkinson's disease references psique bpb jfr balajis pradiptaray dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ramensky ccr azazello dbgrant colinveal xingxu Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB srp33 Ema daed
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted by 74 people rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser jbhiatt yylin mgomes BioNica idoerg pjcite swp09 kgutwin mcbla cpwardell References for 3DSim paper johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 EisenLab biomedical-nlp Microbial-Ecology Plantandetc mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM
	Searching for three-dimensional secondary structural patterns in proteins with ProSMoS [My Copy] Bioinformatics, Vol. 23, No. 11. (1 June 2007), pp. 1331-1338. by Shuoyong Shi, Yi Zhong, Indraneel Majumdar, S. Sri Krishna, Nick V. Grishin posted by 1 person HawkinsJohnC
	ProSMoS server: a pattern-based search using interaction matrix representation of protein structures. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009) by Shuoyong Shi, Bhadrachalam Chitturi, Nick V. Grishin posted by 1 person HawkinsJohnC
	An all-atom knowledge-based energy function for protein-DNA threading, docking decoy discrimination, and prediction of transcription-factor binding profiles [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 3. (2009), pp. 718-730. by Beisi Xu, Yuedong Yang, Haojun Liang, Yaoqi Zhou posted by 1 person HawkinsJohnC
	A computational system for modelling flexible protein-protein and protein-DNA docking. [My Copy] Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, Vol. 6 (1998), pp. 183-192. by M. J. Sternberg, P. Aloy, H. A. Gabb, et al.R. M. Jackson, G. Moont, E. Querol, F. X. Aviles posted by 1 person HawkinsJohnC
	Features of a Smad3 MH1-DNA complex. Roles of water and zinc in DNA binding. [My Copy] The Journal of biological chemistry, Vol. 278, No. 22. (30 May 2003), pp. 20327-20331. by J. Chai, J. W. Wu, N. Yan, J. Massagué, N. P. Pavletich, Y. Shi posted by 1 person HawkinsJohnC
	Prediction of protein interaction sites from sequence profile and residue neighbor list [My Copy] Proteins: Structure, Function, and Genetics, Vol. 44, No. 3. (2001), pp. 336-343. by Huan-Xiang Zhou, Yibing Shan posted by 1 person HawkinsJohnC
	Conserved noncoding elements and the evolution of animal body plans. [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology (2 June 2009) by Tanya Vavouri, Ben Lehner posted by 4 people HawkinsJohnC cis-regulatory-evolution BergmanLab cisevol
	Information-driven protein-DNA docking using HADDOCK: it is a matter of flexibility [My Copy] Nucl. Acids Res., Vol. 34, No. 11. (4 July 2006), pp. 3317-3325. by Marc van Dijk, Aalt D. van Dijk, Victor Hsu, Rolf Boelens, Alexandre M. Bonvin posted by 2 people HawkinsJohnC oteri
	Dynamic reprogramming of transcription factors to and from the subtelomere. [My Copy] Genome research, Vol. 19, No. 6. (16 June 2009), pp. 1014-1025. by H. C. Mak, L. Pillus, T. Ideker posted by 7 people megraw HawkinsJohnC epigenetics idonaldson JustinCrocker maximilianh BenosLab
	Motif3D: relating protein sequence motifs to 3D structure [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3333-3336. by Anna Gaulton, Teresa K. Attwood posted by 2 people HawkinsJohnC phoenixzxl
	A protein-DNA docking benchmark [My Copy] Nucl. Acids Res., Vol. 36, No. 14. (1 August 2008), e88. by Marc van Dijk, Alexandre M. Bonvin posted by 5 people HawkinsJohnC oteri reyez neils boris_aguilar
	MSDmotif: exploring protein sites and motifs [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 312. by Adel Golovin, Kim Henrick posted by 7 people pansapiens HawkinsJohnC tjimenez reyez massivemayhem chad_davis Evangelia
	A systems approach to delineate functions of paralogous transcription factors: role of the Yap family in the DNA damage response. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 8. (26 February 2008), pp. 2934-2939. by K. Tan, H. Feizi, C. Luo, S. H. Fan, T. Ravasi, T. G. Ideker posted by 4 people HawkinsJohnC tmmurali djkt pmendes
	Recent Progress and Future Directions in Protein-Protein Docking [My Copy] Current Protein and Peptide Science, Vol. 9, No. 1. (February 2008), pp. 1-15. by Ritchie, W. David posted by 5 people HawkinsJohnC Structural Biology Group TorVergata oteri TobiasAbenius timg
	Clustering protein environments for function prediction: finding PROSITE motifs in 3D [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 4. (2007), S10. by Sungroh Yoon, Jessica Ebert, Eui Y. Chung, Giovanni De Micheli, Russ Altman posted by 5 people HawkinsJohnC iaolier shadowman Einat structural_bioinformatics
	PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs [My Copy] BMC Bioinformatics, Vol. 7 (27 July 2006), 365. by Sylvain Pitre, Frank Dehne, Albert Chan, et al.Jim Cheetham, Alex Duong, Andrew Emili, Marinella Gebbia, Jack Greenblatt, Mathew Jessulat, Nevan Krogan, Xuemei Luo, Ashkan Golshani posted by 2 people HawkinsJohnC gurkanbebek
	Integrated Assessment and Prediction of Transcription Factor Binding [My Copy] PLoS Comput Biol, Vol. 2, No. 6. (16 June 2006), e70. by Andreas Beyer, Christopher Workman, Jens Hollunder, et al.Dörte Radke, Ulrich Möller, Thomas Wilhelm, Trey Ideker posted by 12 people vingron HawkinsJohnC ajbattle nklee jfr balajis wnpx emilyhare samal reidy Ao_Li2007 EisenLab
	SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2 March 2006) by Joan Teyra, Andreas Doms, Michael Schroeder, M Teresa T. Pisabarro posted by 12 people timg flbarroso HawkinsJohnC higueruelo jwm bicko chad_davis choonpeng Radiation_Damage Stressosome jteyra Lombardo_7
	PRINTS and its automatic supplement, prePRINTS [My Copy] Nucl. Acids Res., Vol. 31, No. 1. (1 January 2003), pp. 400-402. by T. K. Attwood, P. Bradley, D. R. Flower, et al.A. Gaulton, N. Maudling, A. L. Mitchell, G. Moulton, A. Nordle, K. Paine, P. Taylor, A. Uddin, C. Zygouri posted by 3 people HawkinsJohnC Cortel siebertm
	Identification of Protein-Protein Interaction Sites from Docking Energy Landscapes [My Copy] Journal of Molecular Biology, Vol. 335, No. 3. (16 January 2004), pp. 843-865. by Juan Fernandez-Recio, Maxim Totrov, Ruben Abagyan posted by 3 people HawkinsJohnC bicko cjeans
	The Smads. [My Copy] Genome Biol, Vol. 2, No. 8. (2001) by L. Attisano, S. Tuen Lee-Hoeflich posted by 2 people HawkinsJohnC sennoma
	Do Patents Perform Like Property? [My Copy] Social Science Research Network Working Paper Series (07 March 2008) by Michael J. Meurer, James E. Bessen posted by 1 person raik
	Dynamic map of protein interactions in the Escherichia coli chemotaxis pathway [My Copy] Mol Syst Biol, Vol. 5 (20 January 2009) by David Kentner, Victor Sourjik posted by 2 people jjray brianb
	A tunable synthetic mammalian oscillator [My Copy] Nature, Vol. 457, No. 7227., pp. 309-312. by Marcel Tigges, Tatiana T. Marquez-Lago, Jörg Stelling, Martin Fussenegger posted by 9 people BP205 jasonpark1 raik jbhiatt samubernard raiyar jec105 margaritis Vincent_Rouilly
	Impact of Limited Solvent Capacity on Metabolic Rate, Enzyme Activities, and Metabolite Concentrations of S. cerevisiae Glycolysis [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (10 October 2008), e1000195. by Alexei Vazquez, Marcio A. de Menezes, Albert-László Barabási, Zoltan N. Oltvai posted by 1 person raik
	The Fas-FADD death domain complex structure unravels signalling by receptor clustering [My Copy] Nature, Vol. 457, No. 7232. (19 February 2009), pp. 1019-1022. by Fiona L. Scott, Boguslaw Stec, Cristina Pop, et al.Malgorzata K. Dobaczewska, Jeongeun J. Lee, Edward Monosov, Howard Robinson, Guy S. Salvesen, Robert Schwarzenbacher, Stefan J. Riedl posted by 3 people cmzmasek raik paulschlesinger
	An efficient method for protein phosphorylation using the artificially introduced of cognate-binding modules into kinases and substrates. [My Copy] Journal of biotechnology, Vol. 131, No. 4. (30 September 2007), pp. 458-465. by Yoshihiro Kobashigawa, Masato Naito, Fuyuhiko Inagaki posted by 1 person tprpip
	Acidic region tyrosines provide access points for allosteric activation of the autoinhibited Vav1 Dbl homology domain. [My Copy] Biochemistry, Vol. 44, No. 46. (22 November 2005), pp. 15257-15268. by G. K. Amarasinghe, M. K. Rosen
	De Novo Formation of a Subnuclear Body [My Copy] Science, Vol. 322, No. 5908. (12 December 2008), pp. 1713-1717. by Trish E. Kaiser, Robert V. Intine, Miroslav Dundr posted by 3 people Schmidtc raik kshundyak
	A quantitative comparison of sRNA-based and protein-based gene regulation [My Copy] Molecular Systems Biology, Vol. 4 (14 October 2008) by Pankaj Mehta, Sidhartha Goyal, Ned S. Wingreen posted by 4 people afenley brianb raik erel10
	How can biochemical reactions within cells differ from those in test tubes? [My Copy] J Cell Sci, Vol. 119, No. 14. (15 July 2006), pp. 2863-2869. by Allen P. Minton posted by 3 people pmendes raik ocs
	A new generation of peptide-based inhibitors targeting HIV-1 reverse transcriptase conformational flexibility. [My Copy] The Journal of biological chemistry (23 October 2008) by Audrey Agopian, Edwige Gros, Gudrun Aldrian-Herrada, Nathalie Bosquet, Pascal Clayette, Gilles Divita posted by 2 people higueruelo raik
	Protein Docking by the Underestimation of Free Energy Funnels in the Space of Encounter Complexes [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (10 October 2008), e1000191. by Yang Shen, Ioannis C. Paschalidis, Pirooz Vakili, Sandor Vajda posted by 4 people kabookie McCammon jmccammon raik
	An integrated cell-free metabolic platform for protein production and synthetic biology. [My Copy] Molecular systems biology, Vol. 4 (14 October 2008) by Michael C. Jewett, Kara A. Calhoun, Alexei Voloshin, Jessica J. Wuu, James R. Swartz posted by 5 people raik pengchy grahamc viktor21614 zwang
	Cavities and Atomic Packing in Protein Structures and Interfaces [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000188. by Shrihari Sonavane, Pinak Chakrabarti posted by 2 people raik zwang
	Organization of Excitable Dynamics in Hierarchical Biological Networks [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000190. by Mark Müller-Linow, Claus C. Hilgetag, Marc-Thorsten Hütt posted by 5 people fbaroni markoffkin zwang raik aramesh2
	Structural biology by NMR: structure, dynamics, and interactions. [My Copy] PLoS computational biology, Vol. 4, No. 9. (September 2008) by P. R. Markwick, T. Malliavin, M. Nilges posted by 10 people rph betainverse bmduggan pengchy raik ruvido zwang laurabailey structural_bioinformatics barry
	Visualizing transient events in amino-terminal autoprocessing of HIV-1 protease [My Copy] Nature, Vol. 455, No. 7213. (2 October 2008), pp. 693-696. by Chun Tang, John M. Louis, Annie Aniana, Jeong-Yong Suh, Marius G. Clore posted by 4 people cactus raik Nielsen group skoddet
	Structure-Guided Comparative Analysis of Proteins: Principles, Tools, and Applications for Predicting Function [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000151. by Raja Mazumder, Sona Vasudevan posted by 12 people i000 pengchy raik chad_davis zwang druvus reyez mdstobbe structural_bioinformatics Bioinformatics barry jameswasmuth
	Frequency-modulated nuclear localization bursts coordinate gene regulation. [My Copy] Nature, Vol. 455, No. 7212. (25 September 2008), pp. 485-490. by Long Cai, Chiraj K. Dalal, Michael B. Elowitz posted by 10 people bertelsen ellarond siebert RockmanLab dpollard erel10 inesdesantiago raik caseybrown jjray
	High-precision FLIM-FRET in fixed and living cells reveals heterogeneity in a simple CFP-YFP fusion protein. [My Copy] Biophysical chemistry, Vol. 127, No. 3. (May 2007), pp. 155-164. by M. Millington, G. J. Grindlay, K. Altenbach, et al.R. K. Neely, W. Kolch, M. Bencina, N. D. Read, A. C. Jones, D. T. Dryden, S. W. Magennis posted by 1 person raik
	Top-Down Analysis of Temporal Hierarchy in Biochemical Reaction Networks [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000177. by Neema Jamshidi, Bernhard Palsson posted by 4 people JeremyZucker aramesh2 raik Ema
	Pathways and intermediates in forced unfolding of spectrin repeats. [My Copy] Structure (London, England : 1993), Vol. 10, No. 8. (August 2002), pp. 1085-1096. by S. M. Altmann, R. G. Grünberg, P. F. Lenne, et al.J. Ylänne, A. Raae, K. Herbert, M. Saraste, M. Nilges, J. K. Hörber posted by 1 person raik
	Peptide bond formation mediated by substrate mimetics. Structure-guidedoptimization of trypsin for synthesis. [My Copy] European journal of biochemistry / FEBS, Vol. 267, No. 24. (December 2000), pp. 7024-7030. by R. Grünberg, I. Domgall, R. Günther, K. Rall, H. J. Hofmann, F. Bordusa posted by 1 person raik
	Spo0A directly controls the switch from acid to solvent production in solvent-forming clostridia. [My Copy] Molecular microbiology, Vol. 37, No. 5. (September 2000), pp. 1172-1185. by A. Ravagnani, K. C. Jennert, E. Steiner, et al.R. Grünberg, J. R. Jefferies, S. R. Wilkinson, D. I. Young, E. C. Tidswell, D. P. Brown, P. Youngman, J. G. Morris, M. Young posted by 1 person raik
	Noise Reduction by Diffusional Dissipation in a Minimal Quorum Sensing Motif [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000167. by Yu Tanouchi, Dennis Tu, Jungsang Kim, Lingchong You posted by 5 people raik erel10 margaritis emptyhb jjray
	Systems biology: Reverse engineering the cell [My Copy] Nature, Vol. 454, No. 7208. (27 August 2008), pp. 1059-1062. by Nicholas T. Ingolia, Jonathan S. Weissman posted by 7 people Scis0000002 Borelli roys guhjy raik dullhunk pkner
	Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 32. (12 August 2008), pp. 11182-11187. by Kei-ichi Okazaki, Shoji Takada posted by 11 people oteri bmduggan xdeupi okapi aqeel raik ruvido structural_bioinformatics McCammon barry zwang
	Co-Evolving Motions at Protein−Protein Interfaces of Two-Component Signaling Systems Identified by Covariance Analysis† [My Copy] Biochemistry, Vol. 47, No. 30. (1 July 2008), pp. 7782-7784. by Hendrik Szurmant, Benjamin G. Bobay, Robert A. White, et al.Daniel M. Sullivan, Richele J. Thompson, Terence Hwa, James A. Hoch, John Cavanagh posted by 7 people KeatingJClub orr raik marck neils paulschlesinger pansapiens
	Regulation of Signal Duration and the Statistical Dynamics of Kinase Activation by Scaffold Proteins [My Copy] PLoS Comput Biol, Vol. 4, No. 6. (27 June 2008), e1000099. by Jason W. Locasale, Arup K. Chakraborty posted by 3 people raik Schmidtc Ema
	Internal dynamics control activation and activity of the autoinhibited Vav DH domain [My Copy] Nature Structural & Molecular Biology, Vol. 15, No. 6. (18 May 2008), pp. 613-618. by Pilong Li, Ilídio R. S. Martins, Gaya K. Amarasinghe, Michael K. Rosen
	Man versus Machine versus Ribozyme [My Copy] PLoS Biology, Vol. 6, No. 5. (1 May 2008), e132. by Andrew D. Ellington posted by 2 people raik austin
	Genomics: Protein fossils live on as RNA [My Copy] Nature, Vol. 453, No. 7196. (5 June 2008), pp. 729-731. by Rajkumar Sasidharan, Mark Gerstein posted by 4 people idoerg operon raik tmmurali
	Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks [My Copy] PLoS Comput Biol, Vol. 4, No. 5. (23 May 2008), e1000086. by Jong Min Lee, Erwin P. Gianchandani, James A. Eddy, Jason A. Papin posted by 10 people schwartzjmc abhishek_tiwari raik guhjy Borelli nolodie bootsy roys lymxz Ema
	3.88\|[thinsp]\|\|[Aring]\| structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy [My Copy] Nature, Vol. 453, No. 7193. (30 April 2008), pp. 415-419. by Xuekui Yu, Lei Jin, Z. Hong Zhou posted by 2 people zeldin raik
	Structure Prediction of Domain Insertion Proteins from Structures of Individual Domains [My Copy] Structure, Vol. 16, No. 4. (8 April 2008), pp. 513-527. by Monica Berrondo, Marc Ostermeier, Jeffrey J. Gray posted by 3 people zwang raik choonpeng
	Accurate prediction of protein\|[ndash]\|protein interactions from sequence alignments using a Bayesian method [My Copy] Molecular Systems Biology, Vol. 4 (12 February 2008) by Lukas Burger, Erik van Nimwegen posted by 15 people iaolier robfsouza raik sjcockell kengg grahamc laughcry zwang biomcgary cabbagezs roys cdeane gjuggler phoenixzxl pansapiens
	Noise Propagation and Signaling Sensitivity in Biological Networks: A Role for Positive Feedback [My Copy] PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e8. by Gil Hornung, Naama Barkai posted by 4 people jjray raik RamuAnandakrishnan fpattyn
	Operating Regimes of Signaling Cycles: Statics, Dynamics, and Noise Filtering [My Copy] PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e246. by Carlos Gomez-Uribe, George C. Verghese, Leonid A. Mirny posted by 2 people raik bayesian
	Biskit--a software platform for structural bioinformatics. [My Copy] Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 769-770. by R. Grünberg, M. Nilges, J. Leckner posted by 6 people raik guhjy aalibes bicko chad_davis structural_bioinformatics
	The many faces of protein-protein interactions: A compendium of interface geometry. [My Copy] PLoS computational biology, Vol. 2, No. 9. (29 September 2006), e124. by Wan Kyu K. Kim, Andreas Henschel, Christof Winter, Michael Schroeder posted by 13 people winterschlaefer zdai raik bicko chad_davis marcius choonpeng BioinfoCIPF SGU-CIPF Evangelia wilbur allmensch marck
	Flexibility and conformational entropy in protein-protein binding. [My Copy] Structure, Vol. 14, No. 4. (April 2006), pp. 683-693. by R. Grünberg, M. Nilges, J. Leckner posted by 9 people hmk raik barry pansapiens lna aqeel allmensch structural_bioinformatics Bioinformatics
	A bottom-up approach to gene regulation. [My Copy] Nature, Vol. 439, No. 7078. (16 February 2006), pp. 856-860. by Nicholas J. Guido, Xiao Wang, David Adalsteinsson, et al.David McMillen, Jeff Hasty, Charles R. Cantor, Timothy C. Elston, J. J. Collins posted by 21 people genocad bertelsen Scis0000002 raik rklancer snuppepuppan guhjy okarsligil bayesian balicea samal madhadron balabu johncumbers mmt proulx dbikard nklee Bioinformatics SynBioSys tmmurali
	Complementarity of Structure Ensembles in Protein-Protein Binding [My Copy] Structure, Vol. 12, No. 12. (December 2004), pp. 2125-2136. by Raik Grunberg, Johan Leckner, Michael Nilges posted by 8 people raik barry lna allmensch cursonivel1 structural_bioinformatics Bioinformatics cursonivel1
	Photorespiratory Metabolism: Genes, Mutants, Energetics, and Redox Signaling [My Copy] Annual Review of Plant Biology, Vol. 60, No. 1. (2009) by Christine H. Foyer, Arnold Bloom, Guillaume Queval, Graham Noctor posted by 2 people KV dpater
	A Cytosolic Pathway for the Conversion of Hydroxypyruvate to Glycerate during Photorespiration in Arabidopsis [My Copy] Plant Cell, Vol. 20, No. 10. (1 October 2008), pp. 2848-2859. by Stefan Timm, Adriano Nunes-Nesi, Tiit Parnik, et al.Katja Morgenthal, Stefanie Wienkoop, Olav Keerberg, Wolfram Weckwerth, Leszek A. Kleczkowski, Alisdair R. Fernie, Hermann Bauwe posted by 1 person dpater
	Respiratory metabolism of illuminated leaves depends on CO2 and O2 conditions [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 2. (15 January 2008), pp. 797-802. by Guillaume Tcherkez, Richard Bligny, Elizabeth Gout, Aline Mahé, Michael Hodges, Gabriel Cornic posted by 1 person dpater
	Carbon isotopes and water use efficiency: sense and sensitivity [My Copy] Oecologia, Vol. 155, No. 3. (1 March 2008), pp. 441-454. by Ulli Seibt, Abazar Rajabi, Howard Griffiths, Joseph Berry posted by 1 person dpater