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	All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins† [My Copy] The Journal of Physical Chemistry B, Vol. 102, No. 18. (1 April 1998), pp. 3586-3616. by A. D. MacKerell, D. Bashford, Bellott, et al.R. L. Dunbrack, J. D. Evanseck, M. J. Field, S. Fischer, J. Gao, H. Guo, S. Ha, D. Joseph-McCarthy, L. Kuchnir, K. Kuczera, F. T. K. Lau, C. Mattos, S. Michnick, T. Ngo, D. T. Nguyen, B. Prodhom, W. E. Reiher, B. Roux, M. Schlenkrich, J. C. Smith, R. Stote, J. Straub, M. Watanabe, J. Wiorkiewicz-Kuczera, D. Yin, M. Karplus posted by 13 people jmparks dsmueller rpetrenko jrperillaj Diego_Prada oceanwind dfgreen mkrishna timg dimka ttjoseph papatonyhill ssomani
	Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes [My Copy] Journal of Computational Physics, Vol. 23, No. 3. (March 1977), pp. 327-341. by J. Ryckaert, G. Ciccotti, H. Berendsen posted by 10 people sunnytov Vadikus dimka rpetrenko choonpeng gcottone stephenbond bmduggan A_Coletta_Thesis ashaytan
	Scalable molecular dynamics with NAMD [My Copy] Journal of Computational Chemistry, Vol. 26, No. 16. (December 2005), pp. 1781-1802. by James C. Phillips, Rosemary Braun, Wei Wang, et al.James Gumbart, Emad Tajkhorshid, Elizabeth Villa, Christophe Chipot, Robert D. Skeel, Laxmikant Kalé, Klaus Schulten posted by 26 people krapnik pjkiley flbarroso yxue r2s2 grondina rpetrenko oteri oceanwind dfgreen vahmurk gisle dimka jwm ttjoseph sangeetha yoel_rf bilab wilsoros sobolevnrm Radiation_Damage Stressosome Bioinformatics insilicodrug baker-group ibuch
	Molecular dynamics simulation of a dipalmitoylphosphatidylcholine bilayer with NaCl. [My Copy] Biophysical journal, Vol. 84, No. 6. (1 June 2003), pp. 3743-3750. by Sagar A. Pandit, David Bostick, Max L. Berkowitz posted by 3 people dimka softsimu robertvacha
	Effect of Ions on a Dipalmitoyl Phosphatidylcholine Bilayer. A Molecular Dynamics Simulation Study [My Copy] J. Phys. Chem. B (15 January 2008) by A. Cordomi, O. Edholm, J. J. Perez posted by 6 people arnaucordomi robertvacha sobolevnrm baker-group softsimu dimka
	GROMACS: fast, flexible, and free. [My Copy] Journal of computational chemistry, Vol. 26, No. 16. (December 2005), pp. 1701-1718. by David Van Der Spoel, Erik Lindahl, Berk Hess, Gerrit Groenhof, Alan E. Mark, Herman J. Berendsen posted by 23 people arifor krapnik r2s2 janneb dsmueller oteri choonpeng sebk dimka jwm ttjoseph bilab rabio Dinler Radiation_Damage Stressosome tji softsimu ashaytan robertvacha sunnytov Diego_Prada A_Coletta_Thesis
	The measurement of resilience with a scanning probe microscope [My Copy] Polymer Testing, Vol. 25, No. 1. (February 2006), pp. 2-11. by M. Huson, J. Maxwell posted by 1 person rpetrenko
	NMR Order Parameters of Biomolecules: A New Analytical Representation and Application to the Gaussian Axial Fluctuation Model [My Copy] Journal of the American Chemical Society, Vol. 116, No. 18. (1 September 1994), pp. 8426-8427. by Rafael Brueschweiler, Peter E. Wright posted by 1 person rpetrenko
	Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 1. Theory and range of validity [My Copy] Journal of the American Chemical Society, Vol. 104, No. 17. (1 August 1982), pp. 4546-4559. by Giovanni Lipari, Attila Szabo posted by 2 people bmduggan rpetrenko
	Hydrophilic elastomeric biomaterials based on resilin-like polypeptides [My Copy] Soft Matter, Vol. 5, No. 18. (2009), pp. 3412-3416. by Manoj B. Charati, Jamie L. Ifkovits, Jason A. Burdick, Jeffery G. Linhardt, Kristi L. Kiick posted by 1 person rpetrenko
	Vicinal Proton Coupling in Nuclear Magnetic Resonance [My Copy] Journal of the American Chemical Society, Vol. 85, No. 18. (1 September 1963), pp. 2870-2871. by Martin Karplus posted by 1 person rpetrenko
	Perspective on Free-Energy Perturbation Calculations for Chemical Equilibria [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 6. (1 June 2008), pp. 869-876. by William L. Jorgensen, Laura L. Thomas posted by 2 people qshao rpetrenko
	Comparison of Atomic-Level and Coarse-Grained Models for Liquid Hydrocarbons from Molecular Dynamics Configurational Entropy Estimates [My Copy] The Journal of Physical Chemistry B, Vol. 110, No. 16. (1 April 2006), pp. 8464-8473. by Riccardo Baron, Alex H. de Vries, Philippe H. Hunenberger, Wilfred F. van Gunsteren posted by 1 person rpetrenko
	Entropy-energy decomposition from nonequilibrium work trajectories. [My Copy] The Journal of chemical physics, Vol. 128, No. 2. (14 January 2008) by Jeremiah Nummela, Faten Yassin, Ioan Andricioaei posted by 1 person rpetrenko
	Temperature-Dependent Conformational Transitions and Hydrogen-Bond Dynamics of the Elastin-Like Octapeptide GVG(VPGVG): A Molecular-Dynamics Study [My Copy] Vol. 86, No. 3. (1 March 2004), pp. 1393-1407. by Roger Rousseau, Eduard Schreiner, Axel Kohlmeyer, Dominik Marx posted by 1 person rpetrenko
	Combining prediction of secondary structure and solvent accessibility in proteins. [My Copy] Proteins, Vol. 59, No. 3. (15 May 2005), pp. 467-475. by Rafał Adamczak, Aleksey Porollo, Jarosław Meller posted by 1 person rpetrenko
	A conserved domain in arthropod cuticular proteins binds chitin [My Copy] Insect Biochemistry and Molecular Biology, Vol. 31, No. 11. (October 2001), pp. 1083-1093. by J. Rebers posted by 1 person rpetrenko
	Amino acid composition of a new rubber-like protein, reslin. [My Copy] Biochimica et biophysica acta, Vol. 48 (15 April 1961), pp. 452-459. by K. BAILEY, T. WEIS-FOGH posted by 1 person rpetrenko
	Assigning secondary structure from protein coordinate data [My Copy] Proteins: Structure, Function, and Genetics, Vol. 35, No. 3. (1999), pp. 313-320. by Sonya M. King, W. Curtis Johnson posted by 1 person rpetrenko
	Tentative identification of a resilin gene in Drosophila melanogaster [My Copy] Insect Biochemistry and Molecular Biology, Vol. 31, No. 10. (September 2001), pp. 965-970. by D. Ardell posted by 1 person rpetrenko
	THE CROSS-LINKS IN RESILIN IDENTIFIED AS DITYROSINE AND TRITYROSINE. [My Copy] Biochimica et biophysica acta, Vol. 93 (9 October 1964), pp. 213-215. by S. O. ANDERSEN posted by 1 person rpetrenko
	Elastomeric Proteins: Structures, Biomechanical Properties, and Biological Roles [My Copy] (15 March 2004) posted by 1 person rpetrenko
	Molecular Orientation and Two-Component Nature of the Crystalline Fraction of Spider Dragline Silk [My Copy] Science, Vol. 271, No. 5245. (5 January 1996), pp. 84-87. by Alexandra H. Simmons, Carl A. Michal, Lynn W. Jelinski posted by 1 person rpetrenko
	Comparison of Repetitive Sequences Derived from High Molecular Weight Subunits of Wheat Glutenin, an Elastomeric Plant Protein [My Copy] Biomacromolecules, Vol. 7, No. 4. (1 April 2006), pp. 1096-1103. by Nikolaus Wellner, Justin T. Marsh, Andrew W. J. Savage, et al.Nigel G. Halford, Peter R. Shewry, E. N. Clare Mills, Peter S. Belton posted by 1 person rpetrenko
	DURATION AND FREQUENCY OF WING BEAT IN THE AGING HOUSE FLY, MUSCA DOMESTICA L [My Copy] Biol Bull, Vol. 131, No. 3. (1 December 1966), pp. 479-486. by Morris Rockstein, Prem L. A. T. A. Bhatnagar posted by 1 person rpetrenko
	Relationship between body mass and biomechanical properties of limb tendons in adult mammals [My Copy] Am J Physiol Regul Integr Comp Physiol, Vol. 266, No. 3. (1 March 1994), pp. R1016-1021. by C. M. Pollock, R. E. Shadwick posted by 1 person rpetrenko
	A Synthetic Resilin Is Largely Unstructured [My Copy] Vol. 95, No. 7. (1 October 2008), pp. 3358-3365. by Kate M. Nairn, Russell E. Lyons, Roger J. Mulder, et al.Stephen T. Mudie, David J. Cookson, Emmanuelle Lesieur, Misook Kim, Deborah Lau, Fiona H. Scholes, Christopher M. Elvin posted by 1 person rpetrenko
	POLYVIEW: a flexible visualization tool for structural and functional annotations of proteins [My Copy] Bioinformatics, Vol. 20, No. 15. (12 October 2004), pp. 2460-2462. by Aleksey A. Porollo, Rafal Adamczak, Jaroslaw Meller posted by 1 person rpetrenko
	The Jump of the Flea: A Study of the Energetics and a Model of the Mechanism [My Copy] J Exp Biol, Vol. 47, No. 1. (1 August 1967), pp. 59-76. by H. C. Bennet-Clark, E. C. A. Lucey posted by 1 person rpetrenko
	A Rubber-Like Protein in Insect Cuticle [My Copy] J Exp Biol, Vol. 37, No. 4. (1 December 1960), pp. 889-907. by Torkel Weis-Fogh posted by 2 people rpetrenko gtklam
	Random-coil behavior and the dimensions of chemically unfolded proteins [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 34. (24 August 2004), pp. 12491-12496. by Jonathan E. Kohn, Ian S. Millett, Jaby Jacob, et al.Bojan Zagrovic, Thomas M. Dillon, Nikolina Cingel, Robin S. Dothager, Soenke Seifert, P. Thiyagarajan, Tobin R. Sosnick, M. Zahid Hasan, Vijay S. Pande, Ingo Ruczinski, Sebastian Doniach, Kevin W. Plaxco posted by 3 people carlosjavierna rpetrenko yxue
	Absolute entropies from molecular dynamics simulation trajectories [My Copy] The Journal of Chemical Physics, Vol. 113, No. 18. (2000), pp. 7809-7817. by Heiko Schäfer, Alan E. Mark, Wilfred F. van Gunsteren posted by 1 person rpetrenko
	NAMD2: Greater Scalability for Parallel Molecular Dynamics1 [My Copy] Journal of Computational Physics*, Vol. 151, No. 1. (May 1999), pp. 283-312. by L. Kale posted by 3 people rpetrenko stephenbond cen4ik
	FlyBase: enhancing Drosophila Gene Ontology annotations [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D555-559. by Susan Tweedie, Michael Ashburner, Kathleen Falls, et al.Paul Leyland, Peter Mcquilton, Steven Marygold, Gillian Millburn, David Osumi-Sutherland, Andrew Schroeder, Ruth Seal, Haiyan Zhang, The FlyBase Consortium posted by 1 person rpetrenko
	On the calculation of entropy from covariance matrices of the atomic fluctuations [My Copy] The Journal of Chemical Physics, Vol. 115, No. 14. (2001), pp. 6289-6292. by Ioan Andricioaei, Martin Karplus posted by 3 people rpetrenko laurenm Elena_Zubova
	Improved prediction of signal peptides: SignalP 3.0. [My Copy] Journal of molecular biology, Vol. 340, No. 4. (16 July 2004), pp. 783-795. by Jannick Dyrløv D. Bendtsen, Henrik Nielsen, Gunnar von Heijne, Søren Brunak posted by 11 people BioNica azazello tfuji rpetrenko katholt nedwards kreibich niallhaslam richter80 sebk raiyar
	Inverse Temperature Transition of a Biomimetic Elastin Model: Reactive Flux Analysis of Folding/Unfolding and Its Coupling to Solvent Dielectric Relaxation† [My Copy] The Journal of Physical Chemistry B, Vol. 110, No. 8. (1 March 2006), pp. 3576-3587. by Marcel Baer, Eduard Schreiner, Axel Kohlmeyer, Roger Rousseau, Dominik Marx posted by 2 people rpetrenko mschofie
	The RCI server: rapid and accurate calculation of protein flexibility using chemical shifts [My Copy] Nucl. Acids Res., Vol. 35, No. suppl_2. (13 July 2007), pp. W531-537. by Mark V. Berjanskii, David S. Wishart posted by 2 people rpetrenko apaydin
	General Framework for Studying the Dynamics of Folded and Nonfolded Proteins by NMR Relaxation Spectroscopy and MD Simulation [My Copy] Journal of the American Chemical Society, Vol. 124, No. 16. (1 April 2002), pp. 4522-4534. by Jeanine J. Prompers, Rafael Bruschweiler posted by 3 people rpetrenko yxue jlh64
	Estimation of absolute and relative entropies of macromolecules using the covariance matrix [My Copy] Chemical Physics Letters, Vol. 215, No. 6. (17 December 1993), pp. 617-621. by J. Schlitter posted by 2 people rpetrenko Diego_Prada
	Path-ensemble averages in systems driven far from equilibrium [My Copy] Physical Review E, Vol. 61, No. 3. (March 2000), 2361. by Gavin E. Crooks posted by 1 person rpetrenko
	Die Berechnung optischer und elektrostatischer Gitterpotentiale [My Copy] Annalen der Physik, Vol. 369, No. 3. (1921), pp. 253-287. by P. P. Ewald posted by 3 people rpetrenko softsimu OndrejMarsalek
	All-atom empirical force field for nucleic acids: II. Application to molecular dynamics simulations of DNA and RNA in solution [My Copy] Journal of Computational Chemistry, Vol. 21, No. 2. (2000), pp. 105-120. by Alexander D. Mackerell, Nilesh K. Banavali posted by 4 people rpetrenko mkrishna gjuggler softsimu
	Contact Model for the Prediction of NMR N−H Order Parameters in Globular Proteins [My Copy] Journal of the American Chemical Society, Vol. 124, No. 43. (1 October 2002), pp. 12654-12655. by Fengli Zhang, Rafael Bruschweiler posted by 3 people rpetrenko yxue allmensch
	Evolution of genes and genomes on the Drosophila phylogeny. [My Copy] Nature, Vol. 450, No. 7167. (8 November 2007), pp. 203-218. by Drosophila 12 Genomes Consortium, Andrew G. Clark, Michael B. Eisen, et al.Douglas R. Smith, Casey M. Bergman, Brian Oliver, Therese A. Markow, Thomas C. Kaufman, Manolis Kellis, William Gelbart, Venky N. Iyer, Daniel A. Pollard, Timothy B. Sackton, Amanda M. Larracuente, Nadia D. Singh, Jose P. Abad, Dawn N. Abt, Boris Adryan, Montserrat Aguade, Hiroshi Akashi, Wyatt W. Anderson, Charles F. Aquadro, David H. Ardell, Roman Arguello, Carlo G. Artieri, Daniel A. Barbash, Daniel Barker, Paolo Barsanti, Phil Batterham, Serafim Batzoglou, Dave Begun, Arjun Bhutkar, Enrico Blanco, Stephanie A. Bosak, Robert K. Bradley, Adrianne D. Brand, Michael R. Brent, Angela N. Brooks, Randall H. Brown, Roger K. Butlin, Corrado Caggese, Brian R. Calvi, A. Bernardo de Carvalho, Anat Caspi, Sergio Castrezana, Susan E. Celniker, Jean L. Chang, Charles Chapple, Sourav Chatterji, Asif Chinwalla, Alberto Civetta, Sandra W. Clifton, Josep M. Comeron, James C. Costello, Jerry A. Coyne, Jennifer Daub, Robert G. David, Arthur L. Delcher, Kim Delehaunty, Chuong B. Do, Heather Ebling, Kevin Edwards, Thomas Eickbush, Jay D. Evans, Alan Filipski, Sven Findeiss, Eva Freyhult, Lucinda Fulton, Robert Fulton, Ana C. Garcia, Anastasia Gardiner, David A. Garfield, Barry E. Garvin, Greg Gibson, Don Gilbert, Sante Gnerre, Jennifer Godfrey, Robert Good, Valer Gotea, Brenton Gravely, Anthony J. Greenberg, Sam Griffiths-Jones, Samuel Gross, Roderic Guigo, Erik A. Gustafson, Wilfried Haerty, Matthew W. Hahn, Daniel L. Halligan, Aaron L. Halpern, Gillian M. Halter, Mira V. Han, Andreas Heger, LaDeana Hillier, Angie S. Hinrichs, Ian Holmes, Roger A. Hoskins, Melissa J. Hubisz, Dan Hultmark, Melanie A. Huntley, David B. Jaffe, Santosh Jagadeeshan, William R. Jeck, Justin Johnson, Corbin D. Jones, William C. Jordan, Gary H. Karpen, Eiko Kataoka, Peter D. Keightley, Pouya Kheradpour, Ewen F. Kirkness, Leonardo B. Koerich, Karsten Kristiansen, Dave Kudrna, Rob J. Kulathinal, Sudhir Kumar, Roberta Kwok, Eric Lander, Charles H. Langley, Richard Lapoint, Brian P. Lazzaro, So-Jeong J. Lee, Lisa Levesque, Ruiqiang Li, Chiao-Feng F. Lin, Michael F. Lin, Kerstin Lindblad-Toh, Ana Llopart, Manyuan Long, Lloyd Low, Elena Lozovsky, Jian Lu, Meizhong Luo, Carlos A. Machado, Wojciech Makalowski, Mar Marzo, Muneo Matsuda, Luciano Matzkin, Bryant McAllister, Carolyn S. McBride, Brendan McKernan, Kevin McKernan, Maria Mendez-Lago, Patrick Minx, Michael U. Mollenhauer, Kristi Montooth, Stephen M. Mount, Xu Mu, Eugene Myers, Barbara Negre, Stuart Newfeld, Rasmus Nielsen, Mohamed A. Noor, Patrick O'Grady, Lior Pachter, Montserrat Papaceit, Matthew J. Parisi, Michael Parisi, Leopold Parts, Jakob S. Pedersen, Graziano Pesole, Adam M. Phillippy, Chris P. Ponting, Mihai Pop, Damiano Porcelli, Jeffrey R. Powell, Sonja Prohaska, Kim Pruitt, Marta Puig, Hadi Quesneville, Kristipati Ravi R. Ram, David Rand, Matthew D. Rasmussen, Laura K. Reed, Robert Reenan, Amy Reily, Karin A. Remington, Tania T. Rieger, Michael G. Ritchie, Charles Robin, Yu-Hui H. Rogers, Claudia Rohde, Julio Rozas, Marc J. Rubenfield, Alfredo Ruiz, Susan Russo, Steven L. Salzberg, Alejandro Sanchez-Gracia, David J. Saranga, Hajime Sato, Stephen W. Schaeffer, Michael C. Schatz, Todd Schlenke, Russell Schwartz, Carmen Segarra, Rama S. Singh, Laura Sirot, Marina Sirota, Nicholas B. Sisneros, Chris D. Smith, Temple F. Smith, John Spieth, Deborah E. Stage, Alexander Stark, Wolfgang Stephan, Robert L. Strausberg, Sebastian Strempel, David Sturgill, Granger Sutton, Granger G. Sutton, Wei Tao, Sarah Teichmann, Yoshiko N. Tobari, Yoshihiko Tomimura, Jason M. Tsolas, Vera L. Valente, Eli Venter, J. Craig Venter, Saverio Vicario, Filipe G. Vieira, Albert J. Vilella, Alfredo Villasante, Brian Walenz, Jun Wang, Marvin Wasserman, Thomas Watts, Derek Wilson, Richard K. Wilson, Rod A. Wing, Mariana F. Wolfner, Alex Wong, Gane Ka-Shu K. Wong, Chung-I I. Wu, Gabriel Wu, Daisuke Yamamoto, Hsiao-Pei P. Yang, Shiaw-Pyng P. Yang, James A. Yorke, Kiyohito Yoshida, Evgeny Zdobnov, Peili Zhang, Yu Zhang, Aleksey V. Zimin, Jennifer Baldwin, Amr Abdouelleil, Jamal Abdulkadir, Adal Abebe, Brikti Abera, Justin Abreu, St Christophe C. Acer, Lynne Aftuck, Allen Alexander, Peter An, Erica Anderson, Scott Anderson, Harindra Arachi, Marc Azer, Pasang Bachantsang, Andrew Barry, Tashi Bayul, Aaron Berlin, Daniel Bessette, Toby Bloom, Jason Blye, Leonid Boguslavskiy, Claude Bonnet, Boris Boukhgalter, Imane Bourzgui, Adam Brown, Patrick Cahill, Sheridon Channer, Yama Cheshatsang, Lisa Chuda, Mieke Citroen, Alville Collymore, Patrick Cooke, Maura Costello, Katie D'Aco, Riza Daza, Georgius De Haan, Stuart DeGray, Christina DeMaso, Norbu Dhargay, Kimberly Dooley, Erin Dooley, Missole Doricent, Passang Dorje, Kunsang Dorjee, Alan Dupes, Richard Elong, Jill Falk, Abderrahim Farina, Susan Faro, Diallo Ferguson, Sheila Fisher, Chelsea D. Foley, Alicia Franke, Dennis Friedrich, Loryn Gadbois, Gary Gearin, Christina R. Gearin, Georgia Giannoukos, Tina Goode, Joseph Graham, Edward Grandbois, Sharleen Grewal, Kunsang Gyaltsen, Nabil Hafez, Birhane Hagos, Jennifer Hall, Charlotte Henson, Andrew Hollinger, Tracey Honan, Monika D. Huard, Leanne Hughes, Brian Hurhula, M. Erii Husby, Asha Kamat, Ben Kanga, Seva Kashin, Dmitry Khazanovich, Peter Kisner, Krista Lance, Marcia Lara, William Lee, Niall Lennon, Frances Letendre, Rosie LeVine, Alex Lipovsky, Xiaohong Liu, Jinlei Liu, Shangtao Liu, Tashi Lokyitsang, Yeshi Lokyitsang, Rakela Lubonja, Annie Lui, Pen MacDonald, Vasilia Magnisalis, Kebede Maru, Charles Matthews, William McCusker, Susan McDonough, Teena Mehta, James Meldrim, Louis Meneus, Oana Mihai, Atanas Mihalev, Tanya Mihova, Rachel Mittelman, Valentine Mlenga, Anna Montmayeur, Leonidas Mulrain, Adam Navidi, Jerome Naylor, Tamrat Negash, Thu Nguyen, Nga Nguyen, Robert Nicol, Choe Norbu, Nyima Norbu, Nathaniel Novod, Barry O'Neill, Sahal Osman, Eva Markiewicz, Otero L. Oyono, Christopher Patti, Pema Phunkhang, Fritz Pierre, Margaret Priest, Sujaa Raghuraman, Filip Rege, Rebecca Reyes, Cecil Rise, Peter Rogov, Keenan Ross, Elizabeth Ryan, Sampath Settipalli, Terry Shea, Ngawang Sherpa, Lu Shi, Diana Shih, Todd Sparrow, Jessica Spaulding, John Stalker, Nicole Stange-Thomann, Sharon Stavropoulos, Catherine Stone, Christopher Strader, Senait Tesfaye, Talene Thomson, Yama Thoulutsang, Dawa Thoulutsang, Kerri Topham, Ira Topping, Tsamla Tsamla, Helen Vassiliev, Andy Vo, Tsering Wangchuk, Tsering Wangdi, Michael Weiand, Jane Wilkinson, Adam Wilson, Shailendra Yadav, Geneva Young, Qing Yu, Lisa Zembek, Danni Zhong, Andrew Zimmer, Zac Zwirko, David B. Jaffe, Pablo Alvarez, Will Brockman, Jonathan Butler, CheeWhye Chin, Sante Gnerre, Manfred Grabherr, Michael Kleber, Evan Mauceli, Iain MacCallum posted by 43 people aaltenburger biomcgary nuttpo daveGerrard Anachff GustavoLacerda mqbphcw3 rpetrenko gwallau chica jlncdr aprasad gjuggler lizbiogen jbsaltz druvus pradiptaray pengchy operon tmmurali indigoviolet djkt timflutre stajich zwang Garamonfok lp2 Bioinformatics EisenLab CharlesM hpaces caseybrown emptyhb urgi Mycology noor PetrovLab isimpson balicea cisevol BergmanLab Drosophila-Genetics-Genomics-2008 hdopazo
	The thermodynamic analysis of thermoelastic measurements on high elastic materials [My Copy] Journal of Polymer Science, Vol. 45, No. 145. (1960), pp. 235-236. by P. J. Flory, A. Ciferri, C. A. J. Hoeve posted by 2 people rpetrenko norris
	Constant temperature simulations using the Langevin equation with velocity Verlet integration [My Copy] Chemical Physics, Vol. 236, No. 1-3. (15 September 1998), pp. 243-252. by Germana M. Paterlini, David M. Ferguson posted by 2 people rpetrenko jwagoner
	CHARMM: A program for macromolecular energy, minimization, and dynamics calculations [My Copy] Journal of Computational Chemistry, Vol. 4, No. 2. (FebruaryFebruary 1983), pp. 187-217. by Bernard .. Brooks,, Robert .. Bruccoleri,, Barry .. Olafson,, David .. States,, S. Swaminathan,, Martin Karplus, posted by 19 people ckmyo anallam ubcg08l flbarroso nickolay newton1234 kgutwin r2s2 rpetrenko oceanwind RamuAnandakrishnan tovrstra dfgreen Lombardo_7 dgront mmuecke rabio saravan gisle
	Design and facile production of recombinant resilin-like polypeptides: gene construction and a rapid protein purification method [My Copy] Protein Engineering, Design and Selection, Vol. 20, No. 1. (12 January 2007), pp. gzl050-32. by Russell E. Lyons, Emmanuelle Lesieur, Misook Kim, et al.Darren C. C. Wong, Mickey G. Huson, Kate M. Nairn, Alan G. Brownlee, Roger D. Pearson, Christopher M. Elvin posted by 1 person rpetrenko
	Elastomeric proteins: biological roles, structures and mechanisms [My Copy] Trends in Biochemical Sciences, Vol. 25, No. 11. (1 November 2000), pp. 567-571. by A. Tatham posted by 2 people rpetrenko grahamc
	Knowledge-based protein secondary structure assignment [My Copy] Proteins: Structure, Function, and Genetics, Vol. 23, No. 4. (December 1995), pp. 566-579. by Dmitrij Frishman, Patrick Argos posted by 6 people mittinatten ashaytan3 rpetrenko marti choonpeng saravan
	Amino acid substitution matrices from protein blocks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 89, No. 22. (15 November 1992), pp. 10915-10919. by S. Henikoff, J. G. Henikoff posted by 16 people VGreiff rshe rpetrenko BioNica maria_hauser cmura alefox j3xucite sebk cen4ik kaarsinogen dgront gurkanbebek Iden-J_GluR cjeans ashwinma
	Protein secondary structure prediction based on position-specific scoring matrices. [My Copy] Journal of molecular biology, Vol. 292, No. 2. (17 September 1999), pp. 195-202. by D. T. Jones posted by 12 people rpetrenko kgutwin pjcite chad_davis wouterboomsma j3xucite dgront rabio rph dandaman saunders granujilla
	Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features [My Copy] Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637. by Wolfgang Kabsch, Christian Sander posted by 34 people dfdong barmak7282 Vadikus j3xucite scampos TLVincent maria_hauser pablocarb rpetrenko carlosjavierna mijam wqia007 dsmueller niallhaslam saunders jwm sebk Diego_Prada pjcite kaarsinogen lna chad_davis wouterboomsma penka ffranca dgront choonpeng rabio gisle medic0747 martainn chgjb mschofie marti
	WebLogo: a sequence logo generator. [My Copy] Genome research, Vol. 14, No. 6. (1 June 2004), pp. 1188-1190. by Gavin E. Crooks, Gary Hon, John-Marc M. Chandonia, Steven E. Brenner posted by 19 people saunders daforerog ramonvidal gwallau ivankel dsmueller GustavoLacerda rpetrenko calderonv hplatero dfgreen Mehlhorn analogAI indigoviolet xiaobeizhao sobolevnrm EisenLab baker-group yevishere
	A simple method to predict protein flexibility using secondary chemical shifts. [My Copy] Journal of the American Chemical Society, Vol. 127, No. 43. (2 November 2005), pp. 14970-14971. by Mark V. Berjanskii, David S. Wishart posted by 8 people laurabailey rpetrenko viktor21614 dsekaran apaydin yongzhao allmensch TSRI_MGL
	Synthesis and properties of crosslinked recombinant pro-resilin [My Copy] Nature, Vol. 437, No. 7051. (13 October 2005), pp. 999-1002. by Christopher M. Elvin, Andrew G. Carr, Mickey G. Huson, et al.Jane M. Maxwell, Roger D. Pearson, Tony Vuocolo, Nancy E. Liyou, Darren C. C. Wong, David J. Merritt, Nicholas E. Dixon posted by 1 person rpetrenko
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted by 87 people claire_jubin danbolser PolymeraseI VGreiff richter80 krapnik azazello rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin C. elegans / WormBase tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology Thaverkamp shung marti ashaytan benwei granujilla
	Mechanism of Hg−C Protonolysis in the Organomercurial Lyase MerB [My Copy] Journal of the American Chemical Society, Vol. 131, No. 37. (23 September 2009), pp. 13278-13285. by Jerry M. Parks, Hong Guo, Cory Momany, et al.Liyuan Liang, Susan M. Miller, Anne O. Summers, Jeremy C. Smith posted by 2 people jmparks r2s2
	Catalytic Mechanism of DNA Backbone Cleavage by the Restriction Enzyme EcoRV: A Quantum Mechanical/Molecular Mechanical Analysis [My Copy] Biochemistry, Vol. 48, No. 38. (29 September 2009), pp. 9061-9075. by Petra Imhof, Stefan Fischer, Jeremy C. Smith posted by 1 person jmparks
	Comparison of PubMed, Scopus, Web of Science, and Google Scholar: strengths and weaknesses [My Copy] FASEB J., Vol. 22, No. 2. (1 February 2008), pp. 338-342. by Matthew E. Falagas, Eleni I. Pitsouni, George A. Malietzis, Georgios Pappas posted by 68 people seancsb nasome6 sfalsharif cyounkin Tomste cphelps aaltenburger radagabriel Nursing Essentials bhengeveld pick600 mawds khan004 niathena jeffcrow jmparks R_C_Cordeiro lyss fabiopietrucci tjpp tarokiritani meikipp reginacastro nuttpo CulCog msampson rodney abc623 tnhh jshigh LabDros gwallau sniklas MurphysLab Integrative Expertise for Global Health jago teachingaging thegoose bertelsen bibliotecaria jenniferwilms beska rickl druvus ceft tanyacovi6 carelcad LEONRANGEL microcosmosinagotable MARCOUNAM eudominguezmartin artaban421 frohike nhoussos daforerog lesikv simdoc lmichan rrbarb A_Hoogendam cyrille hpiwowar JSicot Gaetan ashko lilith guhjy dullhunk
	Importance of the CMAP correction to the CHARMM22 protein force field: dynamics of hen lysozyme. [My Copy] Biophys J, Vol. 90, No. 4. (15 February 2006) by M. Buck, S. Bouguet-Bonnet, R. W. Pastor, A. D. MacKerell posted by 2 people jmparks allmensch
	Hybrid ab initio Kohn-Sham density functional theory/frozen-density orbital-free density functional theory simulation method suitable for biological systems. [My Copy] J Chem Phys, Vol. 128, No. 1. (7 January 2008) by M. Hodak, W. Lu, J. Bernholc posted by 1 person AndreaColetta
	Data-based parameter estimation of generalized multidimensional Langevin processes [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 76, No. 1. (2007) by Illia Horenko, Carsten Hartmann, Christof Schütte, Frank Noe posted by 4 people Structural Biology Group TorVergata A_Coletta_Thesis AndreaColetta toerst
	Towards phase transferable potential functions: Methodology and application to nitrogen [My Copy] The Journal of Chemical Physics, Vol. 103, No. 6. (1995), pp. 2272-2285. by Peter C. Jordan, Paul J. van Maaren, Janez Mavri, David van der Spoel, Herman J. C. Berendsen posted by 1 person AndreaColetta
	A new force field (ECEPP-05) for peptides, proteins, and organic molecules. [My Copy] The journal of physical chemistry. B, Vol. 110, No. 10. (16 March 2006), pp. 5025-5044. by Y. A. Arnautova, A. Jagielska, H. A. Scheraga posted by 2 people flbarroso AndreaColetta
	Force field parametrization through fitting on inflection points in isotherms. [My Copy] Phys Rev Lett, Vol. 93, No. 8. (20 August 2004) by D. Dubbeldam, S. Calero, T. J. Vlugt, et al.R. Krishna, T. L. Maesen, E. Beerdsen, B. Smit posted by 1 person AndreaColetta
	Development of a multipoint model for sulfur in proteins: a new parametrization scheme to reproduce high-level ab initio interaction energies. [My Copy] J Comput Chem, Vol. 26, No. 3. (February 2005), pp. 283-293. by F. Wennmohs, M. Schindler posted by 3 people Structural Biology Group TorVergata A_Coletta_Thesis AndreaColetta
	Development and validation of empirical force field parameters for netropsin. [My Copy] J Chem Inf Model, Vol. 45, No. 6. (c 2005), pp. 1546-1552. by U. Bren, M. Hodoscek, J. Koller posted by 1 person AndreaColetta
	Molecular dynamics simulation of structure, thermodynamic, and dynamic properties of poly(dimethylsilamethylene), poly(dimethylsilatrimethylene) and their alternating copolymer. [My Copy] J Phys Chem B, Vol. 110, No. 32. (17 August 2006), pp. 16047-16058. by Z. A. Makrodimitri, V. E. Raptis, I. G. Economou posted by 1 person AndreaColetta
	Force field development for poly(dimethylsilylenemethylene) with the aid of ab initio calculations. [My Copy] J Phys Chem B, Vol. 110, No. 30. (3 August 2006), pp. 14929-14938. by V. E. Raptis, V. S. Melissas posted by 1 person AndreaColetta
	Ab initio calculations of intramolecular parameters for a class of arylamide polymers. [My Copy] J Comput Chem, Vol. 27, No. 6. (30 April 2006), pp. 693-700. by S. Vemparala, I. Ivanov, V. Pophristic, K. Spiegel, M. L. Klein posted by 3 people Structural Biology Group TorVergata A_Coletta_Thesis AndreaColetta
	[Interaction of topotecan--a DNA topoisomerase inhibitor--with dual-stranded polydeoxyribonucleotides. I. Dimerization of topotecan in solution] [My Copy] Mol Biol (Mosk), Vol. 35, No. 3. (n 2001), pp. 432-441. by S. A. Strel'tsov, S. L. Grokhovskiĭ, I. A. Kudelina, V. A. Oleĭnikov, A. L. Zhuze posted by 2 people AndreaColetta A_Coletta_Thesis
	New hints on the Ph-driven tautomeric equilibria of the topotecan anticancer drug in aqueous solutions from an integrated spectroscopic and quantum-mechanical approach. [My Copy] J Am Chem Soc, Vol. 127, No. 44. (9 November 2005), pp. 15429-15436. by N. Sanna, G. Chillemi, A. Grandi, S. Castelli, A. Desideri, V. Barone posted by 2 people AndreaColetta A_Coletta_Thesis
	Assessing the Accuracy of Metadynamics [My Copy] J. Phys. Chem. B, Vol. 109, No. 14. (14 April 2005), pp. 6714-6721. by A. Laio, A. Rodriguez-Fortea, F. L. Gervasio, M. Ceccarelli, M. Parrinello posted by 4 people Structural Biology Group TorVergata A_Coletta_Thesis loison AndreaColetta
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	Force-field parametrization of retro-inverso modified residues: Development of torsional and electrostatic parameters [My Copy] Journal of Computer-Aided Molecular Design, Vol. 20, No. 1. (January 2006), pp. 13-25. by Curco, David, Rodriguez-Ropero, Francisco, Aleman, Carlos posted by 3 people Structural Biology Group TorVergata A_Coletta_Thesis AndreaColetta
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	Molecular dynamics simulations of biomolecules: long-range electrostatic effects. [My Copy] Annu Rev Biophys Biomol Struct, Vol. 28 (1999), pp. 155-179. by C. Sagui, T. A. Darden posted by 9 people Scis0000002 babakap onufriev lillekatt ttjoseph dgront RamuAnandakrishnan AndreaColetta r2s2
	Computing conformational free energy by deactivated morphing. [My Copy] The Journal of chemical physics, Vol. 129, No. 13. (7 October 2008) by Sanghyun Park, Albert Y. Lau, Benoît Roux posted by 1 person dimka
	Stoichiometry of Kir channels with phosphatidylinositol bisphosphate. [My Copy] Channels (Austin, Tex.), Vol. 2, No. 1. (b 2008), pp. 19-33. by Taihao Jin, Jin Liang L. Sui, Avia Rosenhouse-Dantsker, Kim W. Chan, Lily Y. Jan, Diomedes E. Logothetis posted by 1 person dimka
	General anosmia caused by a targeted disruption of the mouse olfactory cyclic nucleotide-gated cation channel. [My Copy] Neuron, Vol. 17, No. 4. (October 1996), pp. 681-693. by L. J. Brunet, G. H. Gold, J. Ngai posted by 1 person dimka
	The Cys-loop superfamily of ligand-gated ion channels: the impact of receptor structure on function. [My Copy] Biochemical Society transactions, Vol. 32, No. Pt3. (June 2004), pp. 529-534. by C. N. Connolly, K. A. Wafford posted by 1 person dimka
	Cys-loop receptors: new twists and turns. [My Copy] Trends in neurosciences, Vol. 27, No. 6. (June 2004), pp. 329-336. by Henry A. Lester, Mohammed I. Dibas, David S. Dahan, John F. Leite, Dennis A. Dougherty posted by 1 person dimka
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	Receptor-regulated ion channels. [My Copy] Current opinion in cell biology, Vol. 9, No. 2. (April 1997), pp. 155-160. by L. Y. Jan, Y. N. Jan posted by 1 person dimka
	Acetylcholine receptor channel imaged in the open state. [My Copy] Nature, Vol. 373, No. 6509. (5 January 1995), pp. 37-43. by N. Unwin posted by 1 person dimka
	Molecular insights into ion channel function (Review). [My Copy] Molecular membrane biology, Vol. 21, No. 4. (g 2004), pp. 221-225. by Declan A. Doyle posted by 1 person dimka
	Stabilization of the activity of ATP-sensitive potassium channels by ion pairs formed between adjacent Kir6.2 subunits. [My Copy] The Journal of general physiology, Vol. 122, No. 2. (August 2003), pp. 225-237. by Yu-Wen W. Lin, Taiping Jia, Anne M. Weinsoft, Show-Ling L. Shyng posted by 1 person dimka
	Mapping of the physical interaction between the intracellular domains of an inwardly rectifying potassium channel, Kir6.2. [My Copy] The Journal of biological chemistry, Vol. 274, No. 47. (19 November 1999), pp. 33393-33397. by S. J. Tucker, F. M. Ashcroft posted by 1 person dimka
	Molecular determinants of KATP channel inhibition by ATP. [My Copy] The EMBO journal, Vol. 17, No. 12. (15 June 1998), pp. 3290-3296. by S. J. Tucker, F. M. Gribble, P. Proks, et al.S. Trapp, T. J. Ryder, T. Haug, F. Reimann, F. M. Ashcroft posted by 1 person dimka
	Identification of residues contributing to the ATP binding site of Kir6.2. [My Copy] The EMBO journal, Vol. 22, No. 12. (16 June 2003), pp. 2903-2912. by Stefan Trapp, Shozeb Haider, Phillippa Jones, Mark S. Sansom, Frances M. Ashcroft posted by 1 person dimka
	Structure and dynamics of the pore of inwardly rectifying K(ATP) channels. [My Copy] The Journal of biological chemistry, Vol. 275, No. 2. (14 January 2000), pp. 1137-1144. by G. Loussouarn, E. N. Makhina, T. Rose, C. G. Nichols posted by 1 person dimka
	Flexibility of the Kir6.2 inward rectifier K(+) channel pore. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 7. (27 March 2001), pp. 4227-4232. by G. Loussouarn, L. R. Phillips, R. Masia, T. Rose, C. G. Nichols posted by 1 person dimka
	The ligand-sensitive gate of a potassium channel lies close to the selectivity filter. [My Copy] EMBO reports, Vol. 4, No. 1. (January 2003), pp. 70-75. by Peter Proks, Jennifer F. Antcliff, Frances M. Ashcroft posted by 1 person dimka
	Molecular basis of Kir6.2 mutations associated with neonatal diabetes or neonatal diabetes plus neurological features. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 50. (14 December 2004), pp. 17539-17544. by Peter Proks, Jennifer F. Antcliff, Jon Lippiat, Anna L. Gloyn, Andrew T. Hattersley, Frances M. Ashcroft posted by 1 person dimka
	Effects of external cations and mutations in the pore region on C-type inactivation of Shaker potassium channels. [My Copy] Receptors & channels, Vol. 1, No. 1. (1993), pp. 61-71. by J. López-Barneo, T. Hoshi, S. H. Heinemann, R. W. Aldrich posted by 1 person dimka
	Exposure of residues in the cyclic nucleotide-gated channel pore: P region structure and function in gating. [My Copy] Neuron, Vol. 16, No. 1. (January 1996), pp. 141-149. by Z. P. Sun, M. H. Akabas, E. H. Goulding, A. Karlin, S. A. Siegelbaum posted by 1 person dimka