elbrodie's Top Recommendations

These recommendations were last updated 56 days ago.

	Comparative metagenomics of microbial communities. [My Copy] Science (New York, N.Y.), Vol. 308, No. 5721. (22 April 2005), pp. 554-557. by Susannah Green G. Tringe, Christian von Mering, Arthur Kobayashi, et al.Asaf A. Salamov, Kevin Chen, Hwai W. Chang, Mircea Podar, Jay M. Short, Eric J. Mathur, John C. Detter, Peer Bork, Philip Hugenholtz, Edward M. Rubin posted by 26 people Orengo Group Journal Picks CorinYeats hwright skembel Microbial-Ecology Thaverkamp Scis0000002 idoerg jbhiatt kozo-ni jmeppley AaronDarling azazello wenhan sgoetz bluto vrich sanchezbuelna mcox mjetten anammox microbiology_nijmegen jlgreen Green Lab iSEEM djkt
	A Bioinformatician's Guide to Metagenomics [My Copy] Microbiol. Mol. Biol. Rev., Vol. 72, No. 4. (1 December 2008), pp. 557-578. by Victor Kunin, Alex Copeland, Alla Lapidus, Konstantinos Mavromatis, Philip Hugenholtz posted by 49 people ajsferreira Orengo Group Journal Picks CorinYeats sconlan jasontsai Shared Literature Resource of the Microbial Fitness Group - MPI Bremen halinat hwright michaelbarton taylor73 esyoun bluto idoerg hpaces iSEEM skembel inquil EKotlarska anphony stajich sharpton vrich Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot adgrativol Translational Bioinformatics jakechen balicea dbk GustavoLacerda guhjy hessec fhalbrit Roswell Cancer Crosstalk Zephyrus anazhu dswan sjcockell Borelli druvus azazello kinestetika jmeppley neils microbiology_nijmegen Katje allysonlister skato_toyaku
	Functional metagenomic profiling of nine biomes [My Copy] Nature, Vol. 452, No. 7187. (12 March 2008), pp. 629-632. by Elizabeth A. Dinsdale, Robert A. Edwards, Dana Hall, et al.Florent Angly, Mya Breitbart, Jennifer M. Brulc, Mike Furlan, Christelle Desnues, Matthew Haynes, Linlin Li, Lauren McDaniel, Mary A. Moran, Karen E. Nelson, Christina Nilsson, Robert Olson, John Paul, Beltran R. Brito, Yijun Ruan, Brandon K. Swan, Rick Stevens, David L. Valentine, Rebecca V. Thurber, Linda Wegley, Bryan A. White, Forest Rohwer posted by 24 people idoerg Thaverkamp shuzhens Savage Lab, UCLA anphony michaelbarton azazello skembel guhjy djkt neils kinestetika microbiology_nijmegen bluto oelemento alexisfjdufresne vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group jmeppley vrich jlgreen Green Lab iSEEM
	Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior [My Copy] Science, Vol. 311, No. 5760. (27 January 2006), pp. 496-503. by Edward F. Delong, Christina M. Preston, Tracy Mincer, et al.Virginia Rich, Steven J. Hallam, Niels-Ulrik Frigaard, Asuncion Martinez, Matthew B. Sullivan, Robert Edwards, Beltran R. Brito, Sallie W. Chisholm, David M. Karl posted by 21 people hwright Savage Lab, UCLA anphony Thaverkamp skembel eoghanharr dayjm jmeppley michC bluto jdelcampo beatrizfernandez Microbial-Ecology mjetten microbiology_nijmegen mcox vrich jlgreen Green Lab iSEEM djkt
	Use of simulated data sets to evaluate the fidelity of metagenomic processing methods [My Copy] Nature Methods, Vol. 4, No. 6. (29 April 2007), pp. 495-500. by Konstantinos Mavromatis, Natalia Ivanova, Kerrie Barry, et al.Harris Shapiro, Eugene Goltsman, Alice C. McHardy, Isidore Rigoutsos, Asaf Salamov, Frank Korzeniewski, Miriam Land, Alla Lapidus, Igor Grigoriev, Paul Richardson, Philip Hugenholtz, Nikos C. Kyrpides posted by 26 people 8_01 klo CorinYeats dutilh dakelley taylor73 sriesenfeld Thaverkamp skembel druvus Yanno oamg jmeppley bluto azazello GustavoLacerda Glimcher_Lab Bioinformatics carlk alexl mjetten microbiology_nijmegen jlgreen Green Lab iSEEM djkt
	Quantitative phylogenetic assessment of microbial communities in diverse environments. [My Copy] Science (New York, N.Y.), Vol. 315, No. 5815. (23 February 2007), pp. 1126-1130. by C. von Mering, P. Hugenholtz, J. Raes, et al.S. G. Tringe, T. Doerks, L. J. Jensen, N. Ward, P. Bork posted by 27 people michaelbarton hwright pkm idoerg sriesenfeld skembel kozo-ni ana nickluscombe michC bluto agg19954 TaqSys azazello structural_bioinformatics Bioinformatics EBI-regulation Microbial-Ecology Thaverkamp larsjuhljensen rvgomes mjetten microbiology_nijmegen jlgreen Green Lab iSEEM djkt
	Binning sequences using very sparse labels within a metagenome [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (28 April 2008), 215. by Chon K. Chan, Arthur Hsu, Saman Halgamuge, Sen L. Tang posted by 19 people CorinYeats ajsferreira skembel esyoun sriesenfeld jmeppley dakelley Bioinformatics Thaverkamp idoerg azazello druvus alexl mjetten microbiology_nijmegen werwiesel jlgreen iSEEM djkt
	MetaSim—A Sequencing Simulator for Genomics and Metagenomics [My Copy] PLoS ONE, Vol. 3, No. 10. (8 October 2008), e3373. by Daniel C. Richter, Felix Ott, Alexander F. Auch, Ramona Schmid, Daniel H. Huson posted by 15 people Mycology stajich jonilaserson BergmanLab polivares michaelbarton idoerg sriesenfeld iSEEM skembel guhjy azazello hpaces druvus nuin
	A statistical toolbox for metagenomics: assessing functional diversity in microbial communities [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (23 January 2008), 34. by Patrick Schloss, Jo Handelsman posted by 19 people CorinYeats ajsferreira hwright orzenil taylor73 idoerg jonathaneisen skembel druvus jmeppley Microbial-Ecology Thaverkamp alexisfjdufresne mjetten anammox microbiology_nijmegen bluto djkt iSEEM
	The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity. [My Copy] The ISME journal (8 May 2008) by Stephen J J. Bent, Larry J J. Forney posted by 12 people lorenalizarraga80 microrita druvus Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot jdelcampo jlgreen Green Lab iSEEM djkt skembel
	Metatranscriptomics reveals unique microbial small RNAs in the ocean\|[rsquo]\|s water column [My Copy] Nature, Vol. 459, No. 7244. (14 May 2009), pp. 266-269. by Yanmei Shi, Gene W. Tyson, Edward F. DeLong posted by 18 people tonamswish kinestetika gdb michaelbarton samgj Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot microbiology_nijmegen Katje absterga jmeppley Thaverkamp pengchy iSEEM djkt skembel jbhiatt
	Phylogenetic Approaches for Describing and Comparing the Diversity of Microbial Communities [My Copy] Appl. Environ. Microbiol., Vol. 68, No. 8. (1 August 2002), pp. 3673-3682. by Andrew P. Martin posted by 11 people hwright sharpton skembel sriesenfeld jmeppley Microbial-Ecology Thaverkamp mcox Olaf_Ilzins djkt iSEEM
	Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth [My Copy] Science, Vol. 322, No. 5899. (10 October 2008), pp. 275-278. by Dylan Chivian, Eoin L. Brodie, Eric J. Alm, et al.David E. Culley, Paramvir S. Dehal, Todd Z. DeSantis, Thomas M. Gihring, Alla Lapidus, Li-Hung Lin, Stephen R. Lowry, Duane P. Moser, Paul M. Richardson, Gordon Southam, Greg Wanger, Lisa M. Pratt, Gary L. Andersen, Terry C. Hazen, Fred J. Brockman, Adam P. Arkin, Tullis C. Onstott posted by 14 people yyfwuhan lflorez skembel claymans Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot iSEEM djkt Katje dinnes neils microbiology_nijmegen kinestetika
	Metagenomics: Read Length Matters [My Copy] Appl. Environ. Microbiol., Vol. 74, No. 5. (1 March 2008), pp. 1453-1463. by K. Eric Wommack, Jaysheel Bhavsar, Jacques Ravel posted by 18 people n00c michaelbarton jbhiatt skembel Papers recommended by the Roscoff Plankton Group vaulot djkt iSEEM jmeppley azazello Microbial-Ecology microbiology_nijmegen Thaverkamp skato_toyaku rvgomes alexisfjdufresne alexl bluto
	Microbial diversity in the deep sea and the underexplored "rare biosphere". [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 32. (8 August 2006), pp. 12115-12120. by Mitchell L. Sogin, Hilary G. Morrison, Julie A. Huber, et al.David Mark Welch, Susan M. Huse, Phillip R. Neal, Jesus M. Arrieta, Gerhard J. Herndl posted by 16 people idoerg hwright jbhiatt iSEEM skembel skato_toyaku jmeppley balicea madhadron rabu bluto xingxu kinestetika microbiology_nijmegen mcox Olaf_Ilzins
	MEGAN analysis of metagenomic data. [My Copy] Genome research, Vol. 17, No. 3. (06 March 2007), pp. 377-386. by Daniel H. Huson, Alexander F. Auch, Ji Qi, Stephan C. Schuster posted by 21 people karinlag Orengo Group Journal Picks CorinYeats ajsferreira taylor73 esyoun dakelley Thaverkamp druvus idoerg guhjy treangen jmeppley azazello wenhan carpi alexl mjetten anammox microbiology_nijmegen hpaces
	Accurate phylogenetic classification of variable-length DNA fragments [My Copy] Nature Methods, Vol. 4, No. 1. (10 December 2006), pp. 63-72. by Alice C. Mchardy, Héctor G. Martín, Aristotelis Tsirigos, Philip Hugenholtz, Isidore Rigoutsos posted by 15 people dakelley esyoun Bioinformatics Thaverkamp skembel idoerg jmeppley bluto azazello wenhan MBLAB jlgreen Green Lab iSEEM djkt
	From the Cover: A latitudinal diversity gradient in planktonic marine bacteria [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 22. (3 June 2008), pp. 7774-7778. by Jed A. Fuhrman, Joshua A. Steele, Ian Hewson, et al.Michael S. Schwalbach, Mark V. Brown, Jessica L. Green, James H. Brown posted by 11 people hwright paulm skembel skato_toyaku jlgreen Green Lab iSEEM vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group djkt
	Signature Genes as a Phylogenomic Tool. [My Copy] Molecular biology and evolution (19 May 2008) by Bas E E. Dutilh, Berend Snel, Thijs J G J. Ettema, Martijn A A. Huynen posted by 6 people sriesenfeld iSEEM skembel mjetten anammox microbiology_nijmegen
	Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (10 April 2009), e1000352. by James R. White, Niranjan Nagarajan, Mihai Pop posted by 15 people jfr Orengo Group Journal Picks CorinYeats dayjm taylor73 Thaverkamp hpaces sriesenfeld APRegier dswan druvus djkt iSEEM skembel idoerg
	High-resolution metagenomics targets specific functional types in complex microbial communities. [My Copy] Nature biotechnology, Vol. 26, No. 9. (17 September 2008), pp. 1029-1034. by Marina G. Kalyuzhnaya, Alla Lapidus, Natalia Ivanova, et al.Alex C. Copeland, Alice C. McHardy, Ernest Szeto, Asaf Salamov, Igor V. Grigoriev, Dominic Suciu, Samuel R. Levine, Victor M. Markowitz, Isidore Rigoutsos, Susannah G. Tringe, David C. Bruce, Paul M. Richardson, Mary E. Lidstrom, Ludmila Chistoserdova posted by 13 people sameersoi Microbial-Ecology Thaverkamp EKotlarska jbhiatt jmeppley sriesenfeld skembel apostola Katje microbiology_nijmegen Huub_odc zwang
	Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers [My Copy] Nucl. Acids Res., Vol. 36, No. 18. (1 October 2008), e120. by Zongzhi Liu, Todd Z. DeSantis, Gary L. Andersen, Rob Knight posted by 9 people esyoun skembel sconlan ojabado Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot iSEEM jlgreen
	The microbial ocean from genomes to biomes [My Copy] Nature, Vol. 459, No. 7244. (14 May 2009), pp. 200-206. by Edward F. Delong posted by 9 people roys jmeppley Mycology stajich Thaverkamp neils iSEEM djkt skembel
	Environmental Shotgun Sequencing: Its Potential and Challenges for Studying the Hidden World of Microbes [My Copy] PLoS Biol, Vol. 5, No. 3. (13 March 2007), e82. by Jonathan A. Eisen posted by 20 people druvus skembel hwright Thaverkamp AaronDarling anphony precale adgrativol silberbauer jmeppley jdelcampo azazello beatrizfernandez xingxu Microbial-Ecology jlgreen Green Lab olympos djkt iSEEM
	An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP) [My Copy] PLoS ONE, Vol. 3, No. 7. (2 July 2008), e2566. by Dongying Wu, Amber Hartman, Naomi Ward, Jonathan A. Eisen posted by 12 people microbiology_nijmegen Katje AaronDarling skembel sriesenfeld druvus Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot skato_toyaku djkt iSEEM
	Metagenomics: genomic analysis of microbial communities. [My Copy] Annu Rev Genet, Vol. 38 (2004), pp. 525-552. by C. S. Riesenfeld, P. D. Schloss, J. Handelsman posted by 10 people Thaverkamp ericvonwettberg skembel knaseanka jmeppley wenhan mcox djkt Green Lab iSEEM
	Taxonomic distribution of large DNA viruses in the sea [My Copy] Genome Biology, Vol. 9, No. 7. (2008) by Adam Monier, Jean M. Claverie, Hiroyuki Ogata posted by 6 people idoerg sriesenfeld skembel neils iSEEM djkt
	The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families. [My Copy] PLoS Biol, Vol. 5, No. 3. (13 March 2007) by Shibu Yooseph, Granger Sutton, Douglas B B. Rusch, et al.Aaron L L. Halpern, Shannon J J. Williamson, Karin Remington, Jonathan A A. Eisen, Karla B B. Heidelberg, Gerard Manning, Weizhong Li, Lukasz Jaroszewski, Piotr Cieplak, Christopher S S. Miller, Huiying Li, Susan T T. Mashiyama, Marcin P P. Joachimiak, Christopher van Belle, John-Marc M. Chandonia, David A A. Soergel, Yufeng Zhai, Kannan Natarajan, Shaun Lee, Benjamin J J. Raphael, Vineet Bafna, Robert Friedman, Steven E E. Brenner, Adam Godzik, David Eisenberg, Jack E E. Dixon, Susan S S. Taylor, Robert L L. Strausberg, Marvin Frazier, J Craig C. Venter posted by 14 people Thaverkamp skembel AaronDarling azazello jmeppley kaspermunch michC Bioinformatics mjetten microbiology_nijmegen vrich jlgreen Green Lab iSEEM
	Microbial Biogeography: From Taxonomy to Traits [My Copy] Science, Vol. 320, No. 5879. (23 May 2008), pp. 1039-1043. by Jessica L. Green, Brendan J. Bohannan, Rachel J. Whitaker posted by 16 people hwright skembel Savage Lab, UCLA anphony druvus stajich Mycology vaulot Papers recommended by the Roscoff Plankton Group dbikard Centre de Recherches Interdisciplinaires djkt jdelcampo Microbial-Ecology dbensasson iSEEM
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven Salzberg posted by 44 people oannes mijam nuin jfr hzoltan cthachuk darshan fstrozzi adijr debasis bozdagd BergmanLab polivares torfinnnome n00c talponer jmcq rschulz SIMR bioinformatics ghattem operon humburg idonaldson mmartin iSEEM skembel dquest heliopais djkt GeeSharpMinor bertelsen darian Notre Dame Bioinformatics semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus
	Metagenomics reveals our incomplete knowledge of global diversity. [My Copy] Bioinformatics (Oxford, England) (13 July 2008) by Miguel Pignatelli, Gabriel Aparicio, Ignacio Blanquer, Vicente Hernández, Andrés Moya, Javier Tamames posted by 14 people hwright Thaverkamp jmeppley microrita skembel druvus Papers recommended by the Roscoff Plankton Group Microbial-Ecology vaulot reyez iSEEM djkt bootsy nuin
	Genome sequencing in microfabricated high-density picolitre reactors. [My Copy] Nature In Nature, Vol. 437, No. 7057. (15 September 2005), pp. 376-380. by Marcel Margulies, Michael Egholm, William E. Altman, et al.Said Attiya, Joel S. Bader, Lisa A. Bemben, Jan Berka, Michael S. Braverman, Yi-Ju J. Chen, Zhoutao Chen, Scott B. Dewell, Lei Du, Joseph M. Fierro, Xavier V. Gomes, Brian C. Godwin, Wen He, Scott Helgesen, Chun Heen H. Ho, Chun He H. Ho, Gerard P. Irzyk, Szilveszter C. Jando, Maria L. Alenquer, Thomas P. Jarvie, Kshama B. Jirage, Jong-Bum B. Kim, James R. Knight, Janna R. Lanza, John H. Leamon, Steven M. Lefkowitz, Ming Lei, Jing Li, Kenton L. Lohman, Hong Lu, Vinod B. Makhijani, Keith E. McDade, Michael P. McKenna, Eugene W. Myers, Elizabeth Nickerson, John R. Nobile, Ramona Plant, Bernard P. Puc, Michael T. Ronan, George T. Roth, Gary J. Sarkis, Jan Fredrik F. Simons, John W. Simpson, Maithreyan Srinivasan, Karrie R. Tartaro, Alexander Tomasz, Kari A. Vogt, Greg A. Volkmer, Shally H. Wang, Yong Wang, Michael P. Weiner, Pengguang Yu, Richard F. Begley, Jonathan M. Rothberg posted by 45 people Dbarker06 n00c rshe seb1 pachorip katiehumphry jonilaserson michaelbarton sandfire natstreet daforerog idoerg mmartin azazello jbhiatt alessandrobrozzi leechuck bjorns dayjm jmeppley arve RMGraze JAShapiro balajis cdawson AaronDarling treangen usagi-kirin beatrizfernandez wenhan xingxu erbon Microbial-Ecology GIG gatech-compgenomics tpreeprem farhat carpi bpb mcox GustavoLacerda jlgreen Green Lab iSEEM kieran101
	Using pyrosequencing to shed light on deep mine microbial ecology. [My Copy] BMC Genomics, Vol. 7 (2006) by R. A. Edwards, B. Rodriguez-Brito, L. Wegley, et al.M. Haynes, M. Breitbart, D. M. Peterson, M. O. Saar, S. Alexander, E. C. Alexander, F. Rohwer posted by 10 people Thaverkamp iSEEM skembel jmeppley balicea rabu xingxu mcox darioacha werwiesel
	The rational exploration of microbial diversity. [My Copy] The ISME journal (24 July 2008) by Christopher Quince, Thomas P P. Curtis, William T T. Sloan posted by 6 people druvus skembel microbiology_nijmegen Katje madhadron skato_toyaku
	A core gut microbiome in obese and lean twins [My Copy] Nature In Nature, Vol. 457, No. 7228. (30 November 2008), pp. 480-484. by Peter J. Turnbaugh, Micah Hamady, Tanya Yatsunenko, et al.Brandi L. Cantarel, Alexis Duncan, Ruth E. Ley, Mitchell L. Sogin, William J. Jones, Bruce A. Roe, Jason P. Affourtit, Michael Egholm, Bernard Henrissat, Andrew C. Heath, Rob Knight, Jeffrey I. Gordon posted by 14 people danilov jmeppley Microbial-Ecology Thaverkamp azazello skembel idoerg slevy03 booker iSEEM djkt jbhiatt Zephyrus guhjy
	Quantifying environmental adaptation of metabolic pathways in metagenomics [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 5. (3 February 2009), pp. 1374-1379. by Tara A. Gianoulis, Jeroen Raes, Prianka V. Patel, et al.Robert Bjornson, Jan O. Korbel, Ivica Letunic, Takuji Yamada, Alberto Paccanaro, Lars J. Jensen, Michael Snyder, Peer Bork, Mark B. Gerstein posted by 19 people Paccanaro Lab paccanarolab vvoorr djkt jjray roys sharpton Lizzy_fun skembel iSEEM jlgreen Thaverkamp dbensasson anphony michaelbarton idoerg trfield larsjuhljensen jmeppley
	Annotation of metagenome short reads using proxygenes [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i7-13. by Daniel Dalevi, Natalia N. Ivanova, Konstantinos Mavromatis, et al.Sean D. Hooper, Ernest Szeto, Philip Hugenholtz, Nikos C. Kyrpides, Victor M. Markowitz posted by 6 people Thaverkamp iSEEM druvus skembel hpaces neils
	Evolution of Mammals and Their Gut Microbes [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1647-1651. by Ruth E. Ley, Micah Hamady, Catherine Lozupone, et al.Peter J. Turnbaugh, Rob R. Ramey, Stephen J. Bircher, Michael L. Schlegel, Tammy A. Tucker, Mark D. Schrenzel, Rob Knight, Jeffrey I. Gordon posted by 14 people sameersoi pavitra treangen skembel krausedo Zephyrus dinnes djkt dchughes lp2 jlgreen Green Lab iSEEM qwermish
	Microbial diversity - insights from population genetics [My Copy] Environmental Microbiology, Vol. 0, No. 0. (0000), pp. ???-???. by Ted H. Mes posted by 11 people skembel adgrativol iSEEM jonathaneisen jmeppley kinestetika Microbial-Ecology microbiology_nijmegen Katje Thaverkamp Olaf_Ilzins
	Microbial community structure and its functional implications [My Copy] Nature, Vol. 459, No. 7244. (14 May 2009), pp. 193-199. by Jed A. Fuhrman posted by 6 people hwright jmeppley Thaverkamp iSEEM djkt skembel
	Phylogenetic classification of short environmental DNA fragments. [My Copy] Nucleic acids research, Vol. 36, No. 7. (19 April 2008), pp. 2230-2239. by Lutz Krause, Naryttza N. Diaz, Alexander Goesmann, et al.Scott Kelley, Tim W. Nattkemper, Forest Rohwer, Robert A. Edwards, Jens Stoye posted by 9 people karinlag esyoun ematsen dakelley idoerg sriesenfeld skembel hpaces vrich
	Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex [My Copy] Nature Methods, Vol. 5, No. 3. (10 February 2008), pp. 235-237. by Micah Hamady, Jeffrey J. Walker, J. Kirk Harris, Nicholas J. Gold, Rob Knight posted by 12 people natstreet druvus stubrown sandfire iSEEM jlgreen jbhiatt skembel pdexheimer guhjy slevy03 sconlan
	Short pyrosequencing reads suffice for accurate microbial community analysis [My Copy] Nucl. Acids Res., Vol. 35, No. 18. (25 September 2007), e120. by Zongzhi Liu, Catherine Lozupone, Micah Hamady, Frederic D. Bushman, Rob Knight posted by 7 people skembel niallhaslam vrich Green Lab jlgreen djkt iSEEM
	Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic [My Copy] Nature (26 November 2008) by Hélène Agogu￩, Maaike Brink, Julie Dinasquet, Gerhard J. Herndl posted by 6 people skembel iSEEM djkt microbiology_nijmegen kinestetika neils
	The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific [My Copy] PLoS Biol, Vol. 5, No. 3. (13 March 2007), e77. by Douglas B. Rusch, Aaron L. Halpern, Granger Sutton, et al.Karla B. Heidelberg, Shannon Williamson, Shibu Yooseph, Dongying Wu, Jonathan A. Eisen, Jeff M. Hoffman, Karin Remington, Karen Beeson, Bao Tran, Hamilton Smith, Holly Baden-Tillson, Clare Stewart, Joyce Thorpe, Jason Freeman, Cynthia Andrews-Pfannkoch, Joseph E. Venter, Kelvin Li, Saul Kravitz, John F. Heidelberg, Terry Utterback, Yu-Hui Rogers, Luisa I. Falcón, Valeria Souza, Germán Bonilla-Rosso, Luis E. Eguiarte, David M. Karl, Shubha Sathyendranath, Trevor Platt, Eldredge Bermingham, Victor Gallardo, Giselle Tamayo-Castillo, Michael R. Ferrari, Robert L. Strausberg, Kenneth Nealson, Robert Friedman, Marvin Frazier, J. Craig Venter posted by 23 people antonkratz dakelley maria_hauser mlangill AaronDarling azazello skembel aramata jmeppley kaspermunch michC jdelcampo stajich skoch3 beatrizfernandez kinestetika Bioinformatics Microbial-Ecology Koch_Lab microbiology_nijmegen Thaverkamp djkt iSEEM
	The impact of next-generation sequencing technology on genetics [My Copy] Trends in Genetics, Vol. 24, No. 3. (11 February 2008), pp. 133-141. by E MARDIS, posted by 27 people rshe jasontsai n00c kiekyon jessopher daforerog psique idoerg jameswasmuth floatingpoint brdwilde neils jmcq jbsaltz guhjy dchughes djkt niallhaslam urgi zerojinx hpaces jlgreen Green Lab iSEEM cybaer1 giovenko druvus
	Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world [My Copy] Nucl. Acids Res., Vol. 36, No. 21. (1 December 2008), pp. 6688-6719. by Eugene V. Koonin, Yuri I. Wolf posted by 13 people pkm skembel Huub_odc druvus johanviklund Centre de Recherches Interdisciplinaires sbottani microbiology_nijmegen Katje nklee barriot neils aramata
	Disentangling interactions between adaptive divergence and gene flow when ecology drives diversification [My Copy] Ecology Letters, Vol. 11, No. 6. (June 2008), pp. 624-636. by Katja Räsänen, Andrew P. Hendry posted by 8 people hardje jlin anphony skembel cellison Green Lab jlgreen iSEEM
	$My PDF lozupone_06_unifrac.pdf$ UniFrac - An online tool for comparing microbial community diversity in a phylogenetic context [My Copy] BMC Bioinformatics, Vol. 7 (07 August 2006), 371. by Catherine Lozupone, Micah Hamady, Rob Knight posted by 5 people esyoun skembel mcox djkt iSEEM
	The diversity and biogeography of soil bacterial communities. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 3. (17 January 2006), pp. 626-631. by N. Fierer, R. B. Jackson posted by 5 people idoerg fornstar skembel djkt iSEEM
	Species divergence and the measurement of microbial diversity [My Copy] FEMS Microbiology Reviews, Vol. 32, No. 4. (July 2008), pp. 557-578. by Catherine A. Lozupone, Rob Knight posted by 7 people jonathaneisen liucun djkt jlgreen Green Lab iSEEM skembel
	Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing [My Copy] PLoS Genet, Vol. 4, No. 11. (21 November 2008), e1000255. by Susan M. Huse, Les Dethlefsen, Julie A. Huber, David M. Welch, David A. Relman, Mitchell L. Sogin posted by 7 people microbiology_nijmegen Huub_odc azazello sconlan skembel iSEEM djkt
	The convergence of carbohydrate active gene repertoires in human gut microbes [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 39. (30 September 2008), pp. 15076-15081. by Catherine A. Lozupone, Micah Hamady, Brandi L. Cantarel, et al.Pedro M. Coutinho, Bernard Henrissat, Jeffrey I. Gordon, Rob Knight posted by 7 people cmzmasek sharpton Thaverkamp iSEEM djkt skembel sg45653
	The bacterial species definition in the genomic era. [My Copy] Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1475. (29 November 2006), pp. 1929-1940. by K. T. Konstantinidis, A. Ramette, J. M. Tiedje posted by 11 people dutilh druvus AaronDarling skembel treangen iSEEM jmeppley kinestetika Microbial-Ecology microbiology_nijmegen Thaverkamp
	FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix [My Copy] Mol Biol Evol, Vol. 26, No. 7. (1 July 2009), pp. 1641-1650. by Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin posted by 11 people druvus houniao007 pyilmaz rneches iSEEM djkt Journal picks ppgardne jwm skembel nuin
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	High Functional Diversity in <named-content xmlns:xlink="http://www.w3.org/1999/xlink" content-type="genus-species" xlink:type="simple">Mycobacterium tuberculosis</named-content> Driven by Genetic Drift and Human Demography [My Copy] PLoS Biol, Vol. 6, No. 12. (16 December 2008), e311. by Ruth Hershberg, Mikhail Lipatov, Peter M. Small, et al.Hadar Sheffer, Stefan Niemann, Susanne Homolka, Jared C. Roach, Kristin Kremer, Dmitri A. Petrov, Marcus W. Feldman, Sebastien Gagneux posted by 9 people katholt sandfire xingxu skembel jlgreen druvus iSEEM djkt vplagnol
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	Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation. [My Copy] PLoS biology, Vol. 6, No. 7. (22 July 2008), e177. by S. L. Simmons, G. Dibartolo, V. J. Denef, D. S. Goltsman, M. P. Thelen, J. F. Banfield posted by 5 people idoerg sharpton druvus djkt iSEEM
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	Microbial community profiling for human microbiome projects: Tools, techniques, and challenges [My Copy] Genome Research, Vol. 19, No. 7. (21 July 2009), pp. 1141-1152. by Micah Hamady, Rob Knight posted by 9 people jbhiatt dakelley skembel sharpton iSEEM djkt Journal picks ppgardne neils
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	Metagenomic and Small-Subunit rRNA Analyses Reveal the Genetic Diversity of Bacteria, Archaea, Fungi, and Viruses in Soil [My Copy] Appl. Environ. Microbiol., Vol. 73, No. 21. (1 November 2007), pp. 7059-7066. by Noah Fierer, Mya Breitbart, James Nulton, et al.Peter Salamon, Catherine Lozupone, Ryan Jones, Michael Robeson, Robert A. Edwards, Ben Felts, Steve Rayhawk, Rob Knight, Forest Rohwer, Robert B. Jackson posted by 6 people iSEEM jlgreen skembel mellabee kerekesj vrich
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	The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing [My Copy] PLoS Biol, Vol. 6, No. 11. (18 November 2008), e280. by Les Dethlefsen, Sue Huse, Mitchell L. Sogin, David A. Relman posted by 10 people Waikato - Erebus hexaquo azazello sconlan jmeppley treangen skembel maggiecontreras iSEEM djkt
	Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 6. (10 February 2009), pp. 1948-1953. by Jennifer M. Brulc, Dionysios A. Antonopoulos, Margret E. Berg Miller, et al.Melissa K. Wilson, Anthony C. Yannarell, Elizabeth A. Dinsdale, Robert E. Edwards, Edward D. Frank, Joanne B. Emerson, Pirjo Wacklin, Pedro M. Coutinho, Bernard Henrissat, Karen E. Nelson, Bryan A. White posted by 5 people idoerg iSEEM jlgreen skembel jmeppley