Elifsu Sabuncu's Top Recommendations

These recommendations were last updated 20 days ago.

	Evolutionary selection between alternative modes of gene regulation [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 22. (2 June 2009), pp. 8841-8846. by Ulrich Gerland, Terence Hwa posted by 5 people yyfwuhan trfield bpcusack jjray kshundyak
	What Is Stochastic Resonance? Definitions, Misconceptions, Debates, and Its Relevance to Biology [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (29 May 2009), e1000348. by Mark D. Mcdonnell, Derek Abbott posted by 17 people josepe Sergey_gerbek iml bertelsen sylvain_chevallier fccoelho thegoose Gorzomagnificent reyez bayesian trfield flips kentsis fgibson jjray marekrud GeeSharpMinor
	Transcription factor function and promoter architecture govern the evolution of bacterial regulons [My Copy] Proceedings of the National Academy of Sciences (27 February 2009) by Christian J. Perez, Eduardo A. Groisman posted by 6 people Sjitprasutwit trfield mstumpf djkt provero jjray
	Transcriptional infidelity promotes heritable phenotypic change in a bistable gene network. [My Copy] PLoS biology, Vol. 7, No. 2. (24 February 2009), e44. by Alasdair J. Gordon, Jennifer A. Halliday, Matthew D. Blankschien, Philip A. Burns, Fumio Yatagai, Christophe Herman posted by 10 people Winzer ocs Morgan Lab-KSU katiejclowers biomcgary margaritis emptyhb jjray bpcusack VGreiff
	Coding-sequence determinants of gene expression in Escherichia coli. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5924. (10 April 2009), pp. 255-258. by Grzegorz Kudla, Andrew W. Murray, David Tollervey, Joshua B. Plotkin posted by 36 people pmalkus codonusage balabu yyfwuhan dbikard kinestetika samgj dswan bpcusack emptyhb sameersoi dpsuslo8 anwazo Vincent_Rouilly kintoki erel10 michaelbarton fenghezi VGreiff ramanuja austin twatanab coela BergmanLab polivares rpatward lizbiogen jdbowes operon jasontsai absterga jbhiatt jjray kshundyak zwang friendpine
	Partial penetrance facilitates developmental evolution in bacteria [My Copy] Nature, Vol. 460, No. 7254. (05 July 2009), pp. 510-514. by Avigdor Eldar, Vasant K. Chary, Panagiotis Xenopoulos, et al.Michelle E. Fontes, Oliver C. Loson, Jonathan Dworkin, Patrick J. Piggot, Michael B. Elowitz posted by 10 people ellarond bpcusack psique absterga biomcgary Journal picks maren phoenixzxl jbhiatt jjray
	Negative autoregulation linearizes the dose–response and suppresses the heterogeneity of gene expression [My Copy] Proceedings of the National Academy of Sciences (11 March 2009) by Dmitry Nevozhay, Rhys M. Adams, Kevin F. Murphy, Kreš;imir Josić, Gábor Balázsi posted by 3 people cjryan trfield jjray
	Complexity in bacterial cell–cell communication: Quorum signal integration and subpopulation signaling in the Bacillus subtilis phosphorelay [My Copy] Proceedings of the National Academy of Sciences (20 April 2009) by Ilka B. Bischofs, Joshua A. Hug, Aiwen W. Liu, Denise M. Wolf, Adam P. Arkin posted by 5 people trfield coela kalvala jjray Winzer
	A unified and universal explanation for Lévy laws and 1/f noises [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 30. (28 July 2009), pp. 12251-12254. by Iddo Eliazar, Joseph Klafter posted by 5 people pinney vvoorr gi0rgi0ne deanmalmgren jjray
	Quantifying environmental adaptation of metabolic pathways in metagenomics [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 5. (3 February 2009), pp. 1374-1379. by Tara A. Gianoulis, Jeroen Raes, Prianka V. Patel, et al.Robert Bjornson, Jan O. Korbel, Ivica Letunic, Takuji Yamada, Alberto Paccanaro, Lars J. Jensen, Michael Snyder, Peer Bork, Mark B. Gerstein posted by 19 people Paccanaro Lab paccanarolab vvoorr djkt jjray roys sharpton Lizzy_fun skembel iSEEM jlgreen Thaverkamp dbensasson anphony michaelbarton idoerg trfield larsjuhljensen jmeppley
	Scaling and self-organized criticality in proteins I [My Copy] Proceedings of the National Academy of Sciences (13 February 2009) by J. C. Phillips posted by 6 people trfield reyez paulschlesinger amishp kevinchannon jjray
	Signaling Cascades Modulate the Speed of Signal Propagation through Space [My Copy] PLoS ONE, Vol. 4, No. 2. (27 February 2009), e4639. by Christopher C. Govern, Arup K. Chakraborty posted by 3 people cjryan trfield jjray
	Co-translational mRNA decay in Saccharomyces cerevisiae. [My Copy] Nature, Vol. 461, No. 7261. (10 September 2009), pp. 225-229. by Wenqian Hu, Thomas J. Sweet, Sangpen Chamnongpol, Kristian E. Baker, Jeff Coller posted by 6 people biomcgary nzm jjray TRHvidsten bpcusack Journal picks
	Cell Lineages and the Logic of Proliferative Control [My Copy] PLoS Biol, Vol. 7, No. 1. (20 January 2009), e1000015. by Arthur D. Lander, Kimberly K. Gokoffski, Frederic Y. M. Wan, Qing Nie, Anne L. Calof posted by 8 people kentsis tyrell_turing samubernard pablocarb biomcgary jjray GEB dlobo
	Fundamental Evolutionary Limits in Ecological Traits Drive Drosophila Species Distributions [My Copy] Science, Vol. 325, No. 5945. (4 September 2009), pp. 1244-1246. by Vanessa Kellermann, Belinda van Heerwaarden, Carla M. Sgro, Ary A. Hoffmann posted by 4 people tkeitt biomcgary jjray dinnes
	Internal coarse-graining of molecular systems [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6453-6458. by Jérôme Feret, Vincent Danos, Jean Krivine, Russ Harmer, Walter Fontana posted by 11 people jvb leemond31 superpyrin Scis0000002 reyez trfield baker-group sobolevnrm paulschlesinger jjray kshundyak
	A coordinated network of transporters with overlapping specificities provides a robust survival strategy [My Copy] Proceedings of the National Academy of Sciences (18 May 2009) by Nir Tal, Shimon Schuldiner posted by 3 people viktor21614 trfield jjray
	Extracting the multiscale backbone of complex weighted networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6483-6488. by M. Ãngeles Serrano, MariÃ¡n BoguÃ±Ã¡, Alessandro Vespignani posted by 11 people rdiaz tomt21 edws rsantana trfield pinney deanmalmgren baker-group sobolevnrm kevinchannon kshundyak
	A framework for evolutionary systems biology [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 27. by Laurence Loewe posted by 18 people tomhebbron pawelsobko leemond31 maren gwenknight Scis0000002 agomez dswan bertelsen JeremyZucker JoeDunckley Roswell Cancer Crosstalk Zephyrus michaelbarton trfield jjray VGreiff druvus
	Selection to minimise noise in living systems and its implications for the evolution of gene expression [My Copy] Mol Syst Biol, Vol. 4 (4 March 2008) by Ben Lehner posted by 10 people jjray grahamc zwang bootsy biomcgary wilbur caseybrown michaelbarton austin bpcusack
	Positive selection for elevated gene expression noise in yeast [My Copy] Mol Syst Biol, Vol. 5 (18 August 2009) by Zhihua Zhang, Wenfeng Qian, Jianzhi Zhang posted by 2 people jjray biomcgary
	Efficient, sparse biological network determination [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009) by Elias August, Antonis Papachristodoulou posted by 4 people agomez trfield pinney behindtherabbit
	The frailty of adaptive hypotheses for the origins of organismal complexity. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104 Suppl 1, No. Suppl 1. (15 May 2007), pp. 8597-8604. by Michael Lynch posted by 9 people operon robfsouza jjray stevanspringer shaviro stajich margaritis FAB-lab bpcusack
	Self-destructive cooperation mediated by phenotypic noise [My Copy] Nature, Vol. 454, No. 7207. (2008), pp. 987-990. by Martin Ackermann, Barbel Stecher, Nikki E. Freed, Pascal Songhet, Wolf-Dietrich Hardt, Michael Doebeli posted by 8 people Morgan Lab-KSU theodorejmorgan niallhaslam alexeid erel10 skumagai jjray kentsis
	Wings, Horns, and Butterfly Eyespots: How Do Complex Traits Evolve? [My Copy] PLoS Biology, Vol. 7, No. 2. (1 February 2009), e37. by Antónia Monteiro, Ondrej Podlaha posted by 8 people carlk maximilianh biomcgary provero stevanspringer skumagai idoerg jjray
	Evolutionary biology: Microbes exploit groundhog day [My Copy] Nature, Vol. 460, No. 7252. (9 July 2009), pp. 181-181. by Tim F. Cooper posted by 2 people dinnes jjray
	An Optimization Algorithm for Finding Parameters for Bistability [My Copy] (30 May 2009) by Deepak Chandran, Herbert M. Sauro posted by 2 people jjray tinatoni
	A Brief History of the Hypothesis [My Copy] Cell, Vol. 134, No. 3. (8 August 2008), pp. 378-381. by David J. Glass, Ned Hall posted by 19 people guhjy inesdesantiago leonor HugoMarcelo druvus logics of knowledge A_Olympia reyez barry paulschlesinger jjray robertlischke Enro Centre de Recherches Interdisciplinaires Zephyrus bpcusack Roswell Cancer Crosstalk phoenixzxl Tominator
	Potential role of phenotypic mutations in the evolution of protein expression and stability [My Copy] Proceedings of the National Academy of Sciences (1 April 2009) by Moshe Goldsmith, Dan S. Tawfik posted by 3 people bpcusack gulsacan jjray
	Divergent transcription from active promoters. [My Copy] Science (New York, N.Y.), Vol. 322, No. 5909. (19 December 2008), pp. 1849-1851. by Amy C. Seila, J. Mauro Calabrese, Stuart S. Levine, et al.Gene W. Yeo, Peter B. Rahl, Ryan A. Flynn, Richard A. Young, Phillip A. Sharp posted by 17 people guhjy gdb fenghezi tonamswish emptyhb caseybrown siebert sebastien_vigneau inesdesantiago djkt jjray strands Glires lp2 sandersl diaz0058 jbhiatt
	Noise Reduction by Diffusional Dissipation in a Minimal Quorum Sensing Motif [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000167. by Yu Tanouchi, Dennis Tu, Jungsang Kim, Lingchong You posted by 5 people raik erel10 margaritis emptyhb jjray
	Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture [My Copy] Molecular Systems Biology, Vol. 5 (18 August 2009) by Raja Jothi, S. Balaji, Arthur Wuster, et al.Joshua A. Grochow, Jorg Gsponer, Teresa M. Przytycka, L. Aravind, Madan M. Babu posted by 13 people ashishanand apocapoc brianb dswan sjcockell zwang fenghezi rdiaz megraw poirel TRHvidsten jjray biomcgary
	Modularity and interactions in the genetics of gene expression [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6441-6446. by Oren Litvin, Helen C. Causton, Bo-Juen Chen, Dana Pe'er posted by 14 people zufar frohike guhjy dipenps coela Scis0000002 alweber daforerog TRHvidsten trfield deanmalmgren shikin provero roys
	Sequence Context affects the rate of short insertions and deletions in flies and primates [My Copy] Genome Biology, Vol. 9 (21 February 2008), R37. by Amos Tanay, Eric D. Siggia posted by 9 people emptyhb timflutre bpcusack djkt lusk biomcgary gjuggler brant aprasad
	Codon Size Reduction as the Origin of the Triplet Genetic Code [My Copy] PLoS ONE, Vol. 4, No. 5. (27 May 2009), e5708. by Pavel V. Baranov, Maxime Venin, Gregory Provan posted by 1 person trfield
	A Systems Approach to Measuring the Binding Energy Landscapes of Transcription Factors [My Copy] Science, Vol. 315, No. 5809. (12 January 2007), pp. 233-237. by Sebastian J. Maerkl, Stephen R. Quake posted by 12 people absterga jjray dpollard emilyhare adepace aswin skoch3 EisenLab Koch_Lab blobbybirdman emptyhb brant
	Positive Selection of Tyrosine Loss in Metazoan Evolution [My Copy] Science, Vol. 325, No. 5948. (25 September 2009), pp. 1686-1688. by Chris S. Tan, Adrian Pasculescu, Wendell A. Lim, Tony Pawson, Gary D. Bader, Rune Linding posted by 9 people memerman nzm arjun_citeulike Journal picks bpcusack djkt jjray Mycology stajich
	How selection affects phenotypic fluctuation [My Copy] Mol Syst Biol, Vol. 5 (28 April 2009) by Yoichiro Ito, Hitoshi Toyota, Kunihiko Kaneko, Tetsuya Yomo posted by 3 people jjray michaelbarton biomcgary
	A Simple Screen to Identify Promoters Conferring High Levels of Phenotypic Noise [My Copy] PLoS Genet, Vol. 4, No. 12. (19 December 2008), e1000307. by Nikki E. Freed, Olin K. Silander, Bärbel Stecher, Alex Böhm, Wolf-Dietrich Hardt, Martin Ackermann posted by 9 people Morgan Lab-KSU theodorejmorgan xingxu proulx sconlan slumpy42 jjray erel10 bpcusack
	Role of Translational Coupling in Robustness of Bacterial Chemotaxis Pathway [My Copy] PLoS Biol, Vol. 7, No. 8. (18 August 2009), e1000171. by Linda Løvdok, Kajetan Bentele, Nikita Vladimirov, et al.Anette Müller, Ferencz S. Pop, Dirk Lebiedz, Markus Kollmann, Victor Sourjik posted by 3 people vladimirov jjray biomcgary
	Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution [My Copy] Cell, Vol. 134, No. 2. (25 July 2008), pp. 341-352. by Allan D. Drummond, Claus O. Wilke posted by 7 people robfsouza nilsbecker scherrer jjray cambray bpcusack zwang
	The Consequences of Base Pair Composition Biases for Regulatory Network Organization in Prokaryotes [My Copy] Mol Biol Evol, Vol. 26, No. 10. (1 October 2009), pp. 2171-2173. by Otto X. Cordero, Paulien Hogeweg posted by 4 people operon jjray emptyhb maximilianh
	Transcriptional Regulatory Circuits: Predicting Numbers from Alphabets [My Copy] Science, Vol. 325, No. 5939. (24 July 2009), pp. 429-432. by Harold D. Kim, Tal Shay, Erin K. O'Shea, Aviv Regev posted by 18 people pkm ptrobajo rdiaz Gene Regulation bborgeson guhjy sergiun emptyhb greg cajunsushi Borelli leliavski TRHvidsten jjray apocapoc fenghezi dswan daforerog
	Adaptive prediction of environmental changes by microorganisms [My Copy] Nature, Vol. 460, No. 7252. (17 June 2009), pp. 220-224. by Amir Mitchell, Gal H. Romano, Bella Groisman, et al.Avihu Yona, Erez Dekel, Martin Kupiec, Orna Dahan, Yitzhak Pilpel posted by 10 people yyfwuhan kinestetika biomcgary sriesenfeld timotay izuleta iSEEM djkt jjray michaelbarton
	Uncovering metabolic pathways relevant to phenotypic traits of microbial genomes [My Copy] Genome Biology, Vol. 10 (10 March 2009), R28. by Gabi, Hans-Werner Mewes posted by 4 people druvus natstreet trfield biomcgary
	Network hubs buffer environmental variation in Saccharomyces cerevisiae. [My Copy] PLoS biology, Vol. 6, No. 11. (4 November 2008), e264. by Sasha F. Levy, Mark L. Siegal posted by 7 people biomcgary semrich emptyhb benjaminsb bpcusack grahamc caseybrown
	Conservation and Rewiring of Functional Modules Revealed by an Epistasis Map in Fission Yeast [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 405-410. by Assen Roguev, Sourav Bandyopadhyay, Martin Zofall, et al.Ke Zhang, Tamas Fischer, Sean R. Collins, Hongjing Qu, Michael Shales, Han-Oh Park, Jacqueline Hayles, Kwang-Lae Hoe, Dong-Uk Kim, Trey Ideker, Shiv I. Grewal, Jonathan S. Weissman, Nevan J. Krogan posted by 16 people dakelley biomcgary ajbattle nzm Keksle jbhiatt lflorez roys sjung tmmurali zwang marck caseybrown emptyhb bpcusack brembs
	Investigating the two-moment characterisation of subcellular biochemical networks [My Copy] Journal of Theoretical Biology, Vol. 260, No. 3. (07 October 2009), pp. 340-352. by Mukhtar Ullah, Olaf Wolkenhauer posted by 3 people jjray tinatoni bertelsen
	Unstable tandem repeats in promoters confer transcriptional evolvability. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5931. (29 May 2009), pp. 1213-1216. by M. D. Vinces, M. Legendre, M. Caldara, M. Hagihara, K. J. Verstrepen posted by 16 people xianjun absterga orzenil gjuggler bpcusack pkonings cis-regulatory-evolution cisevol fenghezi cambray APRegier antonkratz JustinCrocker scjparker leliavski jjray
	Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. [My Copy] Journal of molecular biology, Vol. 193, No. 4. (20 February 1987), pp. 723-750. by O. G. Berg, P. H. von Hippel posted by 12 people mox emptyhb jjray indigoviolet lusk discreteonyxorb EisenLab cisevol cis-regulatory-evolution Ema brant zambujo
	Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species. [My Copy] PLoS biology, Vol. 7, No. 6. (16 June 2009), e1000134. by Pedro Beltrao, Jonathan C. Trinidad, Dorothea Fiedler, et al.Assen Roguev, Wendell A. Lim, Kevan M. Shokat, Alma L. Burlingame, Nevan J. Krogan posted by 15 people psique dakelley robfsouza emptyhb mingzhi leemond31 chica tmmurali biomcgary kiekyon neils bpcusack djkt renatomilani ematsen
	Robust, Tunable Biological Oscillations from Interlinked Positive and Negative Feedback Loops [My Copy] Science, Vol. 321, No. 5885. (4 July 2008), pp. 126-129. by Tony Y. Tsai, Yoon S. Choi, Wenzhe Ma, Joseph R. Pomerening, Chao Tang, James E. Ferrell posted by 15 people balabu Synthetic Biology jjray BP205 jasonpark1 t_richardson agonzale margaritis madhadron Borelli kentsis caseybrown stringertheory dbikard SynBioSys
	Nucleosome Retention and the Stochastic Nature of Promoter Chromatin Remodeling for Transcription [My Copy] Cell, Vol. 133, No. 4. (16 May 2008), pp. 716-726. by Hinrich Boeger, Joachim Griesenbeck, Roger D. Kornberg posted by 2 people emptyhb jjray
	Exact stochastic simulation of coupled chemical reactions [My Copy] The Journal of Physical Chemistry, Vol. 81, No. 25. (1 December 1977), pp. 2340-2361. by Daniel T. Gillespie posted by 8 people Dangerfc adamnellis devinli jporternj hadesnumb jjray ner25 chiufanlee
	Hierarchical structure and the prediction of missing links in networks [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 98-101. by Aaron Clauset, Cristopher Moore, M. E. J. Newman posted by 47 people ipark-kaist carlk gtgt15 saket wei_tang Kovanen diamantis cfelipesp orahcio rcrane kubyaddi pbull Ema jago cmor balicea kengg jjray soramame_0518 deanmalmgren briordan hryk tny AbnerCYH cactus tmmurali akshat bryanhughes gagliol margaritis guhjy craigwilson06 cmmorel eyliu markusd elsantosneto pinney i-stevenson fbaroni nedwards apwesolowski Borelli ptrobajo dpf rds lfriedl sen_cheng
	Adaptation and the evolution of parasite virulence in a connected world [My Copy] Nature (27 May 2009) by Geoff Wild, Andy Gardner, Stuart A. West posted by 8 people VGreiff dinnes tomhebbron phoenixzxl venancio jjray gwallau leliavski
	An epistatic ratchet constrains the direction of glucocorticoid receptor evolution [My Copy] Nature, Vol. 461, No. 7263. (24 September 2009), pp. 515-519. by Jamie T. Bridgham, Eric A. Ortlund, Joseph W. Thornton posted by 11 people venancio merpublic docv bpcusack cmzmasek jjray zwang Mycology stajich Annab stevanspringer
	Waddington's canalization revisited: developmental stability and evolution. [My Copy] Proceedings of the National Academy of Sciences of the United States of America. , Vol. 99, No. 16. (6 August 2002), pp. 10528-10532. by Mark L. Siegal, Aviv Bergman posted by 4 people antonkratz jjray emptyhb balicea
	Network Analysis in the Social Sciences [My Copy] Science, Vol. 323, No. 5916. (13 February 2009), pp. 892-895. by Stephen P. Borgatti, Ajay Mehra, Daniel J. Brass, Giuseppe Labianca posted by 32 people colmryan orzenil rrbarb vachicba rsantana jaspervoskuilen quintosol rcrane rdiaz aalves eegilbert paulovn ddahlem acrmartins donpellegrino Kovanen phreeza BCDC Lab Notebook Zephyrus sebastien_vigneau stringertheory zhangyangli ACED study group on social networks matthijs pkonings pick600 mstumpf jago trfield kshundyak Med Anthro @ UF cgravlee
	Small-scale copy number variation and large-scale changes in gene expression [My Copy] Proceedings of the National Academy of Sciences (22 October 2008) by Yuriy Mileyko, Richard I. Joh, Joshua S. Weitz posted by 8 people jporternj austin zufar azazello mtagaya bpcusack ealloza jjray
	Evolution of Eukaryotic Transcription Circuits [My Copy] Science, Vol. 319, No. 5871. (28 March 2008), pp. 1797-1799. by Brian B. Tuch, Hao Li, Alexander D. Johnson posted by 7 people biomcgary roys balabu emptyhb AbnerCYH djkt bpcusack
	The evolution of modularity in bacterial metabolic networks [My Copy] Proceedings of the National Academy of Sciences (6 May 2008), 0712149105. by Anat Kreimer, Elhanan Borenstein, Uri Gophna, Eytan Ruppin posted by 14 people rouault ocs hryk qwermish deanmalmgren carlk jjray skato_toyaku mjoach tmmurali phoenixzxl roys pinney saket
	Integrated Assessment of Genomic Correlates of Protein Evolutionary Rate [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (12 June 2009), e1000413. by Yu Xia, Eric A. Franzosa, Mark B. Gerstein posted by 10 people aprasad chica biomcgary gjuggler Journal picks kiekyon michaelbarton djkt RamuAnandakrishnan bpcusack
	Avoiding dangerous missense: thermophiles display especially low mutation rates. [My Copy] PLoS genetics, Vol. 5, No. 6. (19 June 2009), e1000520. by John W. Drake posted by 5 people jasontsai operon michaelbarton jjray bpcusack
	Empirical fitness landscapes reveal accessible evolutionary paths [My Copy] Nature, Vol. 445, No. 7126. (25 January 2007), pp. 383-386. by Frank J. Poelwijk, Daniel J. Kiviet, Daniel M. Weinreich, Sander J. Tans posted by 8 people stevanspringer jjray cckan timflutre grahamc lusk zwang bpcusack
	Tuning the Activation Threshold of a Kinase Network by Nested Feedback Loops [My Copy] Science, Vol. 324, No. 5926. (24 April 2009), pp. 509-512. by Quincey A. Justman, Zach Serber, James E. Ferrell, Hana El-Samad, Kevan M. Shokat posted by 5 people erel10 biomcgary renatomilani jbhiatt jjray
	Colored extrinsic fluctuations and stochastic gene expression [My Copy] Mol Syst Biol, Vol. 4 (6 May 2008) by Vahid Shahrezaei, Julien F. Ollivier, Peter S. Swain posted by 4 people chiufanlee jjray margaritis Ema
	Natural Selection Shapes Genome-Wide Patterns of Copy-Number Polymorphism in Drosophila melanogaster [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1629-1631. by J. J. Emerson, Margarida Cardoso-Moreira, Justin O. Borevitz, Manyuan Long posted by 11 people operon sameersoi dinnes skumagai Neeperando djkt emptyhb balicea APRegier popgen bpcusack
	Costly Mistakes: Translational Infidelity and Protein Homeostasis [My Copy] Cell, Vol. 134, No. 2. (25 July 2008), pp. 204-206. by Evan T. Powers, William E. Balch posted by 3 people paramitamandal jjray bpcusack
	Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation. [My Copy] Nature reviews. Genetics (1 July 2008) by Luis López-Maury, Samuel Marguerat, Jürg Bähler posted by 17 people ynaito gridqueenundercover lingxuan R.E.A.D Zephyrus rouault lp2 BTS-PT-AS-CS vertikalist Ema jmjimenez bootsy jjray klo cambray bpcusack guhjy
	Identification of a topological characteristic responsible for the biological robustness of regulatory networks. [My Copy] PLoS computational biology, Vol. 5, No. 7. (24 July 2009), e1000442. by Yangle Wu, Xiaomeng Zhang, Jianglei Yu, Qi Ouyang posted by 10 people jjray roys Software-Architecture Integrative Expertise for Global Health jago winterstream phoenixzxl reyez tinatoni TRHvidsten
	Backup in gene regulatory networks explains differences between binding and knockout results [My Copy] Molecular Systems Biology, Vol. 5 (16 June 2009) by Anthony Gitter, Zehava Siegfried, Michael Klutstein, et al.Oriol Fornes, Baldo Oliva, Itamar Simon, Ziv Bar-Joseph posted by 7 people pablocarb cassj biomcgary roys kiekyon jjray TRHvidsten
	Computing generalized Langevin equations and generalized Fokker–Planck equations [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 27. (7 July 2009), pp. 10884-10889. by Eric Darve, Jose Solomon, Amirali Kia posted by 3 people sobolevnrm chiufanlee jjray
	Chromatin decouples promoter threshold from dynamic range [My Copy] Nature, Vol. 453, No. 7192. (16 April 2008), pp. 246-250. by Felix H. Lam, David J. Steger, Erin K. O/'Shea posted by 5 people talponer mmcclean inesdesantiago emptyhb jjray
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted by 33 people memerman operon TRHvidsten BioNica cmzmasek timflutre pradiptaray alexeid marti bpcusack hpaces dinnes gjuggler djkt ArtemPankin Khavkin's lab phoenixzxl jago marck imtechnology aprasad zwang bmaust bpb michaelbarton Schmidtc AbnerCYH gulsacan emptyhb iSEEM jlgreen Green Lab nuin
	Quantitative model for gene regulation by lambda phage repressor [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 79, No. 4. (February 1982), pp. 1129-1133. by G. K. Ackers, A. D. Johnson, M. A. Shea posted by 2 people jjray emptyhb
	Fundamentally different strategies for transcriptional regulation are revealed by information-theoretical analysis of binding motifs [My Copy] (21 Jan 2009) by Leonid A. Mirny, Zeba Wunderlich posted by 4 people emptyhb chrn akraemer jjray
	Robust and sensitive control of a quorum-sensing circuit by two interlocked feedback loops [My Copy] Mol Syst Biol, Vol. 4 (16 December 2008) by Joshua W. Williams, Xiaohui Cui, Andre Levchenko, Ann M. Stevens posted by 5 people jvb Synthetic_Biology_Literature biomcgary jjray stringertheory
	Optimization of gene expression by natural selection [My Copy] Proceedings of the National Academy of Sciences (12 January 2009) by Trevor Bedford, Daniel L. Hartl posted by 7 people rdiaz timflutre bpcusack phoenixzxl cis-regulatory-evolution cisevol jjray
	Assessing the relevance of node features for network structure [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 28. (14 July 2009), pp. 11433-11438. by Ginestra Bianconi, Paolo Pin, Matteo Marsili posted by 13 people rdiaz daforerog Kovanen zwang apocapoc Diego_Prada winterstream trfield deanmalmgren tomt21 roys tmmurali statnet
	From biophysics to evolutionary genetics: statistical aspects of gene regulation. [My Copy] BMC bioinformatics, Vol. 8 Suppl 6 (2007) by Michael Lässig posted by 8 people sockington leemond31 jjray heliopais guhjy shigepong bertelsen bpcusack
	Is Genetic Evolution Predictable? [My Copy] Science, Vol. 323, No. 5915. (6 February 2009), pp. 746-751. by David L. Stern, Virginie Orgogozo posted by 14 people emptyhb Scis0000002 anphony provero kshundyak balabu pkonings R.E.A.D Zephyrus jjray kaniko RamuAnandakrishnan zwang phoenixzxl
	Pervasive Natural Selection in the Drosophila Genome? [My Copy] PLoS Genetics, Vol. 5, No. 6. (5 June 2009), e1000495. by Guy Sella, Dmitri A. Petrov, Molly Przeworski, Peter Andolfatto posted by 9 people timflutre emptyhb jjray ematsen reyez Morgan Lab-KSU lindseyfallis djkt APRegier
	Stochastic Processes in Physics and Chemistry, Third Edition (North-Holland Personal Library) [My Copy] (07 May 2007) by N. G. Van Kampen posted by 8 people chiufanlee Dangerfc danman delius pdelosri kkims EPFL_SB_ITP_LBS jjray
	Universally Sloppy Parameter Sensitivities in Systems Biology Models [My Copy] PLoS Comput Biol, Vol. 3, No. 10. (5 October 2007), e189. by Ryan N. Gutenkunst, Joshua J. Waterfall, Fergal P. Casey, Kevin S. Brown, Christopher R. Myers, James P. Sethna posted by 15 people dadiamah jjray arne Savage Lab, UCLA mhasoba Borelli cjryan biomcgary faisalm fishtank cjeans sobolevnrm baker-group afenley entropy
	Genetic properties influencing the evolvability of gene expression. [My Copy] Science (New York, N.Y.), Vol. 317, No. 5834. (6 July 2007), pp. 118-121. by Christian R. Landry, Bernardo Lemos, Scott A. Rifkin, W. J. Dickinson, Daniel L. Hartl posted by 16 people daveGerrard BergmanLab dbensasson jjray brant balicea sebastien_vigneau grahamc emarker EisenLab heliopais cisevol cis-regulatory-evolution caseybrown emptyhb klo
	Intrinsic fluctuations in stochastic delay systems: theoretical description and application to a simple model of gene regulation [My Copy] (21 Jan 2009) by Tobias Galla posted by 2 people jjray chiufanlee
	Genome-scale gene/reaction essentiality and synthetic lethality analysis [My Copy] Molecular Systems Biology, Vol. 5 (18 August 2009) by Patrick F. Suthers, Alireza Zomorrodi, Costas D. Maranas posted by 4 people Orengo Group Journal Picks robertrentzsch pinney biomcgary
	Bacterial response regulators: versatile regulatory strategies from common domains [My Copy] Trends in Biochemical Sciences, Vol. 32, No. 5. (May 2007), pp. 225-234. by Rong Gao, Timothy R. Mack, Ann M. Stock posted by 4 people blobbybirdman Myxo group kroos jjray
	Age-Dependent Evolution of the Yeast Protein Interaction Network Suggests a Limited Role of Gene Duplication and Divergence [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (28 November 2008), e1000232. by Wan K. Kim, Edward M. Marcotte posted by 8 people wangbo dakelley biomcgary cabbagesofdoom chad_davis grahamc bpcusack tmmurali
	Substrate competition as a source of ultrasensitivity in the inactivation of wee1. [My Copy] Cell, Vol. 128, No. 6. (23 March 2007), pp. 1133-1145. by S. Y. Kim, J. E. Ferrell posted by 3 people jjray arne dIEMoSIRIS
	Release of reactive nitrogen intermediates and reactive oxygen intermediates from mouse peritoneal macrophages. Comparison of activating cytokines and evidence for independent production [My Copy] J Immunol, Vol. 141, No. 7. (1 October 1988), pp. 2407-2412. by Ah Ding, Cf Nathan, Dj Stuehr posted by 7 people HEIRS Immunology and Autoimmune Diseases HEIRS H2O2 and Other Oxidative Mediators HEIRS - Environmental Illness Research HEIRS Cellular Biology HEIRS jjray devender
	Correlation between gene expression profiles and protein-protein interactions within and across genomes [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2730-2738. by Nitin Bhardwaj, Hui Lu posted by 4 people jperkins jjray lfriedl kdl
	Bistable switches control memory and plasticity in cellular differentiation [My Copy] Proceedings of the National Academy of Sciences (6 April 2009) by Lei Wang, Brandon L. Walker, Stephen Iannaccone, Devang Bhatt, Patrick J. Kennedy, William T. Tse posted by 2 people major724 jjray
	The Effect of Ongoing Exposure Dynamics in Dose Response Relationships [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (5 June 2009), e1000399. by Josep M. Pujol, Joseph E. Eisenberg, Charles N. Haas, James S. Koopman posted by 1 person trfield
	Self-Organization of the Escherichia coli Chemotaxis Network Imaged with Super-Resolution Light Microscopy [My Copy] PLoS Biol, Vol. 7, No. 6. (23 June 2009), e1000137. by Derek Greenfield, Ann L. McEvoy, Hari Shroff, et al.Gavin E. Crooks, Ned S. Wingreen, Eric Betzig, Jan Liphardt posted by 5 people tomd66 schmidtm robfsouza jjray dbikard
	Functional States of the genome-scale Escherichia coli transcriptional regulatory system. [My Copy] PLoS computational biology, Vol. 5, No. 6. (5 June 2009), e1000403. by Erwin P. Gianchandani, Andrew R. Joyce, Bernhard Ø. Palsson, Jason A. Papin posted by 4 people schwartzjmc roys TRHvidsten trfield
	<italic>Caenorhabditis elegans</italic> Genomic Response to Soil Bacteria Predicts Environment-Specific Genetic Effects on Life History Traits [My Copy] PLoS Genet, Vol. 5, No. 6. (5 June 2009), e1000503. by Joseph D. Coolon, Kenneth L. Jones, Timothy C. Todd, Bryanua C. Carr, Michael A. Herman posted by 3 people iSEEM djkt trfield
	Systematic fluctuation expansion for neural network activity equations [My Copy] (26 Feb 2009) by Michael A. Buice, Jack D. Cowan, Carson C. Chow posted by 1 person jjray
	Transcriptional stochasticity in gene expression [My Copy] Journal of Theoretical Biology, Vol. 238, No. 2. (21 January 2006), pp. 348-367. by Tomasz Lipniacki, Pawel Paszek, Anna Marciniak-Czochra, Allan R. Brasier, Marek Kimmel posted by 6 people jjray bayesian bh2 balabu cottrell klo