emilyhare's Top Recommendations

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	Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes [My Copy] Genome Research, Vol. 15, No. 8. (August 2005), pp. 1034-1050. by Adam Siepel, Gill Bejerano, Jakob S. Pedersen, et al.Angie S. Hinrichs, Minmei Hou, Kate Rosenbloom, Hiram Clawson, John Spieth, LaDeana W. Hillier, Stephen Richards, George M. Weinstock, Richard K. Wilson, Richard A. Gibbs, W. James Kent, Webb Miller, David Haussler posted by 26 people nicholasflann thegoose2 farhat skembel alessandroparini C. elegans / WormBase tharris bpb aprasad balajis eckart_bindewald indigoviolet brant pradiptaray adepace djkt olympos sujaikumar Stew EisenLab cisevol cis-regulatory-evolution dmc elfar AlexanderPico ConklinLab
	Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change. [My Copy] Development, Vol. 125, No. 5. (March 1998), pp. 949-958. by M. Z. Ludwig, N. H. Patel, M. Kreitman posted by 7 people lusk adepace EisenLab cisevol cis-regulatory-evolution emptyhb brant
	Evolution of alternative transcriptional circuits with identical logic [My Copy] Nature, Vol. 443, No. 7110. (28 September 2006), pp. 415-420. by Annie E. Tsong, Brian B. Tuch, Hao Li, Alexander D. Johnson posted by 15 people joebilkobailey biomcgary cmzmasek balabu marcius brant adepace aswin srfairclough EisenLab BioinfoCIPF SGU-CIPF cisevol cis-regulatory-evolution emptyhb
	Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene. [My Copy] Nat Genet (17 September 2006) by Hilde Janssens, Shuling Hou, Johannes Jaeger, et al.Ah-Ram R. Kim, Ekaterina Myasnikova, David Sharp, John Reinitz posted by 9 people okarsligil brant dpollard adepace allPowerde Stew Bioinformatics EisenLab emptyhb
	Functional Evolution of a cis-Regulatory Module [My Copy] PLoS Biology, Vol. 3, No. 4. (1 April 2005), e93. by Michael Z. Ludwig, Arnar Palsson, Elena Alekseeva, Casey M. Bergman, Janaki Nathan, Martin Kreitman posted by 9 people gderwin mimulus_99 blobbybirdman UH - Computational Biology cisevol cis-regulatory-evolution Myxo group brant emptyhb
	Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene [My Copy] Nature, Vol. 440, No. 7087., pp. 1050-1053. by Benjamin Prud'homme, Nicolas Gompel, Antonis Rokas, et al.Victoria A. Kassner, Thomas M. Williams, Shu-Dan Yeh, John R. True, Sean B. Carroll posted by 10 people RMGraze dpollard balicea tny adepace ranb Garamonfok EisenLab blobbybirdman emptyhb
	Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. [My Copy] Journal of molecular biology, Vol. 193, No. 4. (20 February 1987), pp. 723-750. by O. G. Berg, P. H. von Hippel posted by 12 people mox emptyhb jjray indigoviolet lusk discreteonyxorb EisenLab cisevol cis-regulatory-evolution Ema brant zambujo
	Transcriptional Control in the Segmentation Gene Network of Drosophila [My Copy] PLoS Biol, Vol. 2, No. 9. (31 August 2004), e271. by Mark D. Schroeder, Michael Pearce, John Fak, et al.HongQing Fan, Ulrich Unnerstall, Eldon Emberly, Nikolaus Rajewsky, Eric D. Siggia, Ulrike Gaul posted by 14 people BergmanLab daveGerrard TranscriptionalRegulationWithThermodynamicModels indigoviolet dpollard adepace wrowell EisenLab Cline_lab UH - Computational Biology emptyhb dlmace pradiptaray balicea
	Evolution of cis-regulatory sequence and function in Diptera [My Copy] Heredity, Vol. aop, No. current. by P. J. Wittkopp, posted by 9 people rouault indigoviolet dpollard adepace emmahe EisenLab cisevol cis-regulatory-evolution emptyhb
	A mutation accumulation assay reveals a broad capacity for rapid evolution of gene expression [My Copy] Nature, Vol. 438, No. 7065., pp. 220-223. by Scott A. Rifkin, David Houle, Junhyong Kim, Kevin P. White posted by 12 people BergmanLab daveGerrard dayjm indigoviolet dpollard adepace johncumbers djkt mimulus_99 EisenLab caseybrown emptyhb
	Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. [My Copy] Genome Res, Vol. 15, No. 1. (January 2005), pp. 1-18. by S. Richards, Y. Liu, B. R. Bettencourt, et al.P. Hradecky, S. Letovsky, R. Nielsen, K. Thornton, M. J. Hubisz, R. Chen, R. P. Meisel, O. Couronne, S. Hua, M. A. Smith, P. Zhang, J. Liu, H. J. Bussemaker, M. F. van Batenburg, S. L. Howells, S. E. Scherer, E. Sodergren, B. B. Matthews, M. A. Crosby, A. J. Schroeder, D. Ortiz-Barrientos, C. M. Rives, M. L. Metzker, D. M. Muzny, G. Scott, D. Steffen, D. A. Wheeler, K. C. Worley, P. Havlak, K. J. Durbin, A. Egan, R. Gill, J. Hume, M. B. Morgan, G. Miner, C. Hamilton, Y. Huang, L. Waldron, D. Verduzco, K. P. Clerc-Blankenburg, I. Dubchak, M. A. Noor, W. Anderson, K. P. White, A. G. Clark, S. W. Schaeffer, W. Gelbart, G. M. Weinstock, R. A. Gibbs posted by 14 people alhufton briann tsackton jshapiro operon indigoviolet penka adepace emptyhb EisenLab Nie cisevol cis-regulatory-evolution skumagai
	Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura. [My Copy] Genome Biol, Vol. 5, No. 9. (2004) by B. P. Berman, B. D. Pfeiffer, T. R. Laverty, et al.S. L. Salzberg, G. M. Rubin, M. B. Eisen, S. E. Celniker posted by 13 people emptyhb cajunsushi mbeisen indigoviolet adepace Stew nklee EisenLab cisevol cis-regulatory-evolution maximilianh Auger Dead 60's
	Genomic sources of regulatory variation in cis and in trans. [My Copy] Cell Mol Life Sci, Vol. 62, No. 16. (August 2005), pp. 1779-1783. by P. J. Wittkopp posted by 4 people adepace mimulus_99 EisenLab brant
	Two medfly promoters that have originated by recent gene duplication drive distinct sex, tissue and temporal expression patterns. [My Copy] Genetics, Vol. 156, No. 1. (September 2000), pp. 173-182. by G. K. Christophides, I. Livadaras, C. Savakis, K. Komitopoulou posted by 4 people brant dpollard adepace EisenLab
	Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 38. (19 September 2006), pp. 14062-14067. by Su-In Lee, Dana Pe'er, AimÃ©e M. Dudley, George M. Church, Daphne Koller posted by 10 people ajbattle ptrobajo biomcgary balajis brant adepace stajich lp2 EisenLab jasonflannick
	Genetic Dissection of Transcriptional Regulation in Budding Yeast [My Copy] Science, Vol. 296, No. 5568. (26 April 2002), pp. 752-755. by Rachel B. Brem, Gael Yvert, Rebecca Clinton, Leonid Kruglyak posted by 14 people balabu RMGraze JAShapiro brant dpollard adepace oannes raiyar lp2 jo_davies mimulus_99 EisenLab Regulomics_UCHSC steinmetzlab
	Prediction of cis-regulatory elements using binding site matrices--the successes, the failures and the reasons for both. [My Copy] Curr Opin Genet Dev, Vol. 15, No. 4. (August 2005), pp. 395-402. by T. Vavouri, G. Elgar posted by 9 people troels_marstrand kaspermunch dpollard adepace lusk Stew Bioinformatics EisenLab brant
	Genomic evolution of Hox gene clusters. [My Copy] Science, Vol. 313, No. 5795. (29 September 2006), pp. 1918-1922. by D. Lemons, W. McGinnis posted by 7 people aaltenburger nsamways tardigrade mtagaya adepace EisenLab blobbybirdman
	Community annotation: Procedures, protocols, and supporting tools. [My Copy] Genome Res (25 October 2006) by Christine G G. Elsik, Kim C C. Worley, Lan Zhang, et al.Natalia V V. Milshina, Huaiyang Jiang, Justin T T. Reese, Kevin L L. Childs, Anand Venkatraman, C Michael M. Dickens, George M M. Weinstock, Richard A A. Gibbs posted by 4 people indigoviolet brant plofje EisenLab
	DPP-responsive silencers contain overlapping mad binding sites. [My Copy] J Biol Chem (6 July 2006) by Sheng Gao, Allen Laughon posted by 3 people indigoviolet brant EisenLab
	A Single Amino Acid Mutation Contributes to Adaptive Beach Mouse Color Pattern [My Copy] Science, Vol. 313, No. 5783. (7 July 2006), pp. 101-104. by Hopi E. Hoekstra, Rachel J. Hirschmann, Richard A. Bundey, Paul A. Insel, Janet P. Crossland posted by 8 people jbsaltz indigoviolet brant dchughes jri EisenLab G4ID Genetics-of-Gambling
	Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome [My Copy] Genome Biology, Vol. 3, No. 12. (2002) by Casey Bergman, Barret Pfeiffer, Diego R. Limas, et al.Roger Hoskins, Andreas Gnirke, Chris Mungall, Adrienne Wang, Brent Kronmiller, Joanne Pacleb, Soo Park, Mark Stapleton, Kenneth Wan, Reed George, Pieter de Jong, Juan Botas, Gerald Rubin, Susan Celniker posted by 8 people hrogers indigoviolet dpollard nklee EisenLab cisevol cis-regulatory-evolution brant
	Using hexamers to predict cis-regulatory modules in Drosophila. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (27 October 2005) by Bob Y. Chan, Dennis Kibler posted by 8 people maximilianh bobychan indigoviolet brant troels_marstrand postrational wrowell EisenLab
	Parallel evolution of conserved noncoding elements that target a common set of developmental regulatory genes from worms to humans. [My Copy] Genome Biology, Vol. 8 (02 February 2007), R15. by Tanya Vavouri, Klaudia Walter, Walter R. Gilks, Ben Lehner, Greg Elgar posted by 10 people indigoviolet dpollard adepace djkt sujaikumar Stew EisenLab cisevol cis-regulatory-evolution smbe2008
	Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis [My Copy] Mol Syst Biol, Vol. 3 (16 January 2007) by Sean D. Hooper, Stephanie Boue, Roland Krause, et al.Lars J. Jensen, Christopher E. Mason, Murad Ghanim, Kevin P. White, Eileen E. M. Furlong, Peer Bork posted by 7 people renatiux indigoviolet dpollard adepace uz_labu_laimi EisenLab larsjuhljensen
	Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo. [My Copy] BMC Bioinformatics, Vol. 3 (24 October 2002) by N. Rajewsky, M. Vergassola, U. Gaul, E. D. Siggia posted by 11 people BergmanLab daveGerrard maximilianh isimpson ansobol indigoviolet adepace koller Stew EisenLab csdhwang
	Repression and loss of gene expression outpaces activation and gain in recently duplicated fly genes [My Copy] PNAS, Vol. 103, No. 31. (1 August 2006), pp. 11637-11641. by Todd H. Oakley, Bjorn Ostman, Asa C. Wilson posted by 5 people indigoviolet cmm adepace EisenLab FAB-lab
	Fine Scale Structural Variants Distinguish the Genomes of Drosophila melanogaster and D. pseudoobscura [My Copy] Genome Biology, Vol. 7 (27 July 2006), R67. by Stuart J. Macdonald, Anthony D. Long posted by 3 people indigoviolet adepace EisenLab
	Comparative genomics of Drosophila and human core promoters [My Copy] Genome Biology, Vol. 7 (07 July 2006), R53. by Peter C. Fitzgerald, David Sturgill, Andrey Shyakhtenko, Brian Oliver, Charles Vinson posted by 8 people BergmanLab daveGerrard indigoviolet adepace himanshu17 smiddha EisenLab uwe
	Initial sequencing and comparative analysis of the mouse genome. [My Copy] Nature, Vol. 420, No. 6915. (5 December 2002), pp. 520-562. by Mouse Genome Sequencing Consortium, Robert H. Waterston, Kerstin Lindblad-Toh, et al.Ewan Birney, Jane Rogers, Josep F. Abril, Pankaj Agarwal, Richa Agarwala, Rachel Ainscough, Marina Alexandersson, Peter An, Stylianos E. Antonarakis, John Attwood, Robert Baertsch, Jonathon Bailey, Karen Barlow, Stephan Beck, Eric Berry, Bruce Birren, Toby Bloom, Peer Bork, Marc Botcherby, Nicolas Bray, Michael R. Brent, Daniel G. Brown, Stephen D. Brown, Carol Bult, John Burton, Jonathan Butler, Robert D. Campbell, Piero Carninci, Simon Cawley, Francesca Chiaromonte, Asif T. Chinwalla, Deanna M. Church, Michele Clamp, Christopher Clee, Francis S. Collins, Lisa L. Cook, Richard R. Copley, Alan Coulson, Olivier Couronne, James Cuff, Val Curwen, Tim Cutts, Mark Daly, Robert David, Joy Davies, Kimberly D. Delehaunty, Justin Deri, Emmanouil T. Dermitzakis, Colin Dewey, Nicholas J. Dickens, Mark Diekhans, Sheila Dodge, Inna Dubchak, Diane M. Dunn, Sean R. Eddy, Laura Elnitski, Richard D. Emes, Pallavi Eswara, Eduardo Eyras, Adam Felsenfeld, Ginger A. Fewell, Paul Flicek, Karen Foley, Wayne N. Frankel, Lucinda A. Fulton, Robert S. Fulton, Terrence S. Furey, Diane Gage, Richard A. Gibbs, Gustavo Glusman, Sante Gnerre, Nick Goldman, Leo Goodstadt, Darren Grafham, Tina A. Graves, Eric D. Green, Simon Gregory, Roderic Guigó, Mark Guyer, Ross C. Hardison, David Haussler, Yoshihide Hayashizaki, LaDeana W. Hillier, Angela Hinrichs, Wratko Hlavina, Timothy Holzer, Fan Hsu, Axin Hua, Tim Hubbard, Adrienne Hunt, Ian Jackson, David B. Jaffe, L. Steven Johnson, Matthew Jones, Thomas A. Jones, Ann Joy, Michael Kamal, Elinor K. Karlsson, Donna Karolchik, Arkadiusz Kasprzyk, Jun Kawai, Evan Keibler, Cristyn Kells, W. James Kent, Andrew Kirby, Diana L. Kolbe, Ian Korf, Raju S. Kucherlapati, Edward J. Kulbokas, David Kulp, Tom Landers, J. P. Leger, Steven Leonard, Ivica Letunic, Rosie Levine, Jia Li, Ming Li, Christine Lloyd, Susan Lucas, Bin Ma, Donna R. Maglott, Elaine R. Mardis, Lucy Matthews, Evan Mauceli, John H. Mayer, Megan McCarthy, W. Richard McCombie, Stuart McLaren, Kirsten McLay, John D. McPherson, Jim Meldrim, Beverley Meredith, Jill P. Mesirov, Webb Miller, Tracie L. Miner, Emmanuel Mongin, Kate T. Montgomery, Michael Morgan, Richard Mott, James C. Mullikin, Donna M. Muzny, William E. Nash, Joanne O. Nelson, Michael N. Nhan, Robert Nicol, Zemin Ning, Chad Nusbaum, Michael J. O'Connor, Yasushi Okazaki, Karen Oliver, Emma Overton-Larty, Lior Pachter, Genís Parra, Kymberlie H. Pepin, Jane Peterson, Pavel Pevzner, Robert Plumb, Craig S. Pohl, Alex Poliakov, Tracy C. Ponce, Chris P. Ponting, Simon Potter, Michael Quail, Alexandre Reymond, Bruce A. Roe, Krishna M. Roskin, Edward M. Rubin, Alistair G. Rust, Ralph Santos, Victor Sapojnikov, Brian Schultz, Jörg Schultz, Matthias S. Schwartz, Scott Schwartz, Carol Scott, Steven Seaman, Steve Searle, Ted Sharpe, Andrew Sheridan, Ratna Shownkeen, Sarah Sims, Jonathan B. Singer, Guy Slater, Arian Smit, Douglas R. Smith, Brian Spencer, Arne Stabenau, Nicole Stange-Thomann, Charles Sugnet, Mikita Suyama, Glenn Tesler, Johanna Thompson, David Torrents, Evanne Trevaskis, John Tromp, Catherine Ucla, Abel Ureta-Vidal, Jade P. Vinson, Andrew C. Von Niederhausern, Claire M. Wade, Melanie Wall, Ryan J. Weber, Robert B. Weiss, Michael C. Wendl, Anthony P. West, Kris Wetterstrand, Raymond Wheeler, Simon Whelan, Jamey Wierzbowski, David Willey, Sophie Williams, Richard K. Wilson, Eitan Winter, Kim C. Worley, Dudley Wyman, Shan Yang, Shiaw-Pyng P. Yang, Evgeny M. Zdobnov, Michael C. Zody, Eric S. Lander posted by 27 people rshe seb1 ajbattle jmanning2k timhubbard taroleo fisherp dkulp sdinka Cortel jwortman Dax42 aprasad ccots indigoviolet adepace treangen joshuashen djkt stajich olympos hausen EisenLab Mycology yoanjacquemin elfar kevinemamy
	The Regulation and Evolution of a Genetic Switch Controlling Sexually Dimorphic Traits in Drosophila [My Copy] Cell, Vol. 134, No. 4. (22 August 2008), pp. 610-623. by Thomas M. Williams, Jane E. Selegue, Thomas Werner, Nicolas Gompel, Artyom Kopp, Sean B. Carroll posted by 3 people emptyhb brant caseybrown
	Turnover of binding sites for transcription factors involved in early Drosophila development [My Copy] Gene, Vol. 310 (22 May 2003), pp. 215-220. by Javier Costas,, Fernando Casares,, Jorge Vieira, posted by 2 people emptyhb brant
	A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system [My Copy] Nucl. Acids Res. (10 March 2008), gkn048. by Marcus B. Noyes, Xiangdong Meng, Atsuya Wakabayashi, Saurabh Sinha, Michael H. Brodsky, Scot A. Wolfe posted by 2 people emptyhb brant
	Regulation of even-skipped stripe 2 in the Drosophila embryo. [My Copy] The EMBO journal, Vol. 11, No. 11. (November 1992), pp. 4047-4057. by S. Small, A. Blair, M. Levine posted by 2 people emptyhb brant
	Subfunctionalization of Duplicated Zebrafish pax6 Genes by cis-Regulatory Divergence [My Copy] PLoS Genetics, Vol. 4, No. 2. (1 February 2008), e29. by Dirk A. Kleinjan, Ruth M. Bancewicz, Philippe Gautier, et al.Ralf Dahm, Helia B. Schonthaler, Giuseppe Damante, Anne Seawright, Ann M. Hever, Patricia L. Yeyati, Veronica van Heyningen, Pedro Coutinho posted by 6 people JustinCrocker brant gjuggler emptyhb maximilianh Stew
	Sequence Context affects the rate of short insertions and deletions in flies and primates [My Copy] Genome Biology, Vol. 9 (21 February 2008), R37. by Amos Tanay, Eric D. Siggia posted by 9 people emptyhb timflutre bpcusack djkt lusk biomcgary gjuggler brant aprasad
	Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. [My Copy] PLoS biology, Vol. 6, No. 2. (12 February 2008), e27. by X. Y. Li, S. MacArthur, R. Bourgon, et al.D. Nix, D. A. Pollard, V. N. Iyer, A. Hechmer, L. Simirenko, M. Stapleton, C. L. Luengo Hendriks, H. C. Chu, N. Ogawa, W. Inwood, V. Sementchenko, A. Beaton, R. Weiszmann, S. E. Celniker, D. W. Knowles, T. Gingeras, T. P. Speed, M. B. Eisen, M. D. Biggin posted by 10 people gdb BergmanLab daveGerrard kengg maximilianh caseybrown emptyhb brant isimpson Stew
	Qualifying the relationship between sequence conservation and molecular function [My Copy] Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 201-205. by Gregory M. Cooper, Christopher D. Brown posted by 8 people farhat emptyhb aprasad brant djkt xingxu bpcusack nklee
	A survey of DNA motif finding algorithms. [My Copy] BMC bioinformatics, Vol. 8 Suppl 7, No. Suppl 7. (2007) by Modan K. Das, Ho-Kwok K. Dai posted by 21 people bsamal Dulce lusk wowalz svenrahmann isimpson BergmanLab daveGerrard coldmeadow druvus Bioinformatics - CRUK Stew emptyhb dquest nklee maximilianh yevishere csdhwang brant xili03 pradiptaray
	Adaptive gene expression divergence inferred from population genomics. [My Copy] PLoS genetics, Vol. 3, No. 10. (1 October 2007), pp. 2007-2013. by Alisha K. Holloway, Mara K. Lawniczak, Jason G. Mezey, David J. Begun, Corbin D. Jones posted by 7 people daveGerrard brant Garamonfok xingxu caseybrown sb_journal_club emptyhb
	Tracing the evolutionary history of Drosophila regulatory regions with models that identify transcription factor binding sites. [My Copy] Mol Biol Evol, Vol. 20, No. 5. (May 2003), pp. 703-714. by E. T. Dermitzakis, C. M. Bergman, A. G. Clark posted by 4 people cisevol cis-regulatory-evolution emptyhb brant
	The molecular basis of eukaryotic transcription [My Copy] PNAS, Vol. 104, No. 32. (7 August 2007), pp. 12955-12961. by Roger D. Kornberg posted by 8 people emptyhb bishoyh dchughes G4ID Genetics-of-Gambling hplatero brant dquest
	Genetic properties influencing the evolvability of gene expression. [My Copy] Science (New York, N.Y.), Vol. 317, No. 5834. (6 July 2007), pp. 118-121. by Christian R. Landry, Bernardo Lemos, Scott A. Rifkin, W. J. Dickinson, Daniel L. Hartl posted by 16 people daveGerrard BergmanLab dbensasson jjray brant balicea sebastien_vigneau grahamc emarker EisenLab heliopais cisevol cis-regulatory-evolution caseybrown emptyhb klo
	Frequent gain and loss of functional transcription factor binding sites. [My Copy] PLoS computational biology, Vol. 3, No. 5. (1 May 2007), e99. by Scott W. Doniger, Justin C. Fay posted by 15 people roys fenghezi lusk JustinCrocker pradiptaray brant dpollard sebastien_vigneau zwang EisenLab maximilianh cisevol cis-regulatory-evolution xili03 emptyhb
	The evolutionary significance of cis-regulatory mutations [My Copy] Nature Reviews Genetics, Vol. 8, No. 3., pp. 206-216. by Gregory A. Wray posted by 14 people provero athma maximilianh brant dpollard dchughes lusk mimulus_99 EisenLab G4ID Genetics-of-Gambling cisevol cis-regulatory-evolution emptyhb
	Evidence for stabilizing selection in a eukaryotic enhancer element [My Copy] Nature, Vol. 403, No. 6769. (3 February 2000), pp. 564-567. by Michael Z. Ludwig, Casey Bergman, Nipam H. Patel, Martin Kreitman posted by 7 people gderwin lusk ranb cisevol cis-regulatory-evolution emptyhb brant
	Genome-wide Prediction of Mammalian Enhancers Based on Analysis of Transcription-Factor Binding Affinity [My Copy] Cell, Vol. 124, No. 1. (13 January 2006), pp. 47-59. by O. Hallikas, K. Palin, N. Sinjushina, et al.R. Rautiainen, J. Partanen, E. Ukkonen, J. Taipale posted by 22 people absterga xingxu cisstem Terkko kaarsinogen tuck brant xwbcn dchughes nickluscombe olympos cabbagezs karfunkel Bioinformatics EisenLab G4ID EBI-regulation Genetics-of-Gambling maximilianh heliopais oelemento emptyhb
	Evolution of Transcription Factor Binding Sites in Mammalian Gene Regulatory Regions: Conservation and Turnover [My Copy] Mol Biol Evol, Vol. 19, No. 7. (1 July 2002), pp. 1114-1121. by Emmanouil T. Dermitzakis, Andrew G. Clark posted by 9 people fenghezi pradiptaray provero adepace EisenLab cisevol cis-regulatory-evolution emptyhb xili03
	Rapid evolution of cis-regulatory sequences via local point mutations. [My Copy] Molecular biology and evolution, Vol. 18, No. 9. (1 September 2001), pp. 1764-1770. by J. R. Stone, G. A. Wray posted by 5 people emptyhb adepace EisenLab cisevol cis-regulatory-evolution
	Detecting natural selection on cis-regulatory DNA [My Copy] Genetica, Vol. 129, No. 1. (January 2007), pp. 7-18. by Hahn, Matthew posted by 7 people provero Zephyrus adepace EisenLab cisevol cis-regulatory-evolution emptyhb
	A Genomic Regulatory Network for Development [My Copy] Science, Vol. 295, No. 5560. (1 March 2002), pp. 1669-1678. by Eric H. Davidson, Jonathan P. Rast, Paola Oliveri, et al.Andrew Ransick, Cristina Calestani, Chiou-Hwa Yuh, Takuya Minokawa, Gabriele Amore, Veronica Hinman, Cesar Arenas-Mena, Ochan Otim, C. Titus Brown, Carolina B. Livi, Pei Y. Lee, Roger Revilla, Alistair G. Rust, Zheng Pan, Maria J. Schilstra, Peter J. C. Clarke, Maria I. Arnone, Lee Rowen, R. Andrew Cameron, David R. McClay, Leroy Hood, Hamid Bolouri posted by 14 people antonkratz emptyhb yyfwuhan GEB dlobo balajis adepace margaritis ccr lusk EisenLab edvin dquest lukaswindhager
	The role of binding site cluster strength in Bicoid-dependent patterning in Drosophila. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 14. (5 April 2005), pp. 4960-4965. by A. Ochoa-Espinosa, G. Yucel, L. Kaplan, et al.A. Pare, N. Pura, A. Oberstein, D. Papatsenko, S. Small posted by 3 people adepace EisenLab emptyhb
	Evolution of development in closely related species of flies and worms. [My Copy] Nat Rev Genet, Vol. 3, No. 12. (December 2002), pp. 907-917. by P. Simpson posted by 6 people thegoose2 C. elegans / WormBase tharris adepace EisenLab emptyhb
	Evolution of developmental genes: molecular microevolution of enhancer sequences at the Ubx locus in Drosophila and its impact on developmental phenotypes. [My Copy] Molecular biology and evolution, Vol. 21, No. 2. (February 2004), pp. 348-363. by J. Phinchongsakuldit, S. MacArthur, J. F. Brookfield posted by 7 people lusk Stew adepace EisenLab cisevol cis-regulatory-evolution emptyhb
	Evolutionary analysis of the well characterized endo16 promoter reveals substantial variation within functional sites. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 24. (14 June 2005), pp. 8591-8596. by J. P. Balhoff, G. A. Wray posted by 6 people gderwin adepace EisenLab cisevol cis-regulatory-evolution emptyhb
	Large-scale turnover of functional transcription factor binding sites in Drosophila. [My Copy] PLoS Comput Biol, Vol. 2, No. 10. (October 2006) by A. M. Moses, D. A. Pollard, D. A. Nix, et al.V. N. Iyer, X. Y. Li, M. D. Biggin, M. B. Eisen posted by 9 people caseybrown adepace eukfn lusk EisenLab maximilianh cisevol cis-regulatory-evolution emptyhb
	Evolution of gene expression in the Drosophila melanogaster subgroup. [My Copy] Nat Genet, Vol. 33, No. 2. (February 2003), pp. 138-144. by S. A. Rifkin, J. Kim, K. P. White posted by 8 people BergmanLab daveGerrard adepace eukfn emarker EisenLab caseybrown emptyhb
	Two or Four Bristles: Functional Evolution of an Enhancer of scute in Drosophilidae [My Copy] PLoS Biology, Vol. 4, No. 12. (1 November 2006), e386. by Sylvain Marcellini, Pat Simpson posted by 5 people dpollard adepace emmahe EisenLab emptyhb
	The Evolution of Transcriptional Regulation in Eukaryotes [My Copy] Mol Biol Evol, Vol. 20, No. 9. (1 September 2003), pp. 1377-1419. by Gregory A. Wray, Matthew W. Hahn, Ehab Abouheif, et al.James P. Balhoff, Margaret Pizer, Matthew V. Rockman, Laura A. Romano posted by 17 people athma provero wrowell ana dpollard adepace nickluscombe anatiferous mimulus_99 structural_bioinformatics Bioinformatics EisenLab EBI-regulation cisevol cis-regulatory-evolution emptyhb emmahe
	Conservation of RET Regulatory Function from Human to Zebrafish Without Sequence Similarity. [My Copy] Science (23 March 2006) by Shannon Fisher, Elizabeth A A. Grice, Ryan M M. Vinton, Seneca L L. Bessling, Andrew S S. McCallion posted by 9 people aprasad adepace nickluscombe EisenLab EBI-regulation maximilianh cisevol cis-regulatory-evolution emptyhb
	Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage [My Copy] Science, Vol. 309, No. 5736. (5 August 2005), pp. 938-940. by Jan Ihmels, Sven Bergmann, Maryam Gerami-Nejad, et al.Itai Yanai, Mark McClellan, Judith Berman, Naama Barkai posted by 15 people hge balabu roys Ema aalibes monod arve marcius adepace entropy EisenLab BioinfoCIPF SGU-CIPF janek04 emptyhb
	Systematic discovery of regulatory motifs in human promoters and 3[prime] UTRs by comparison of several mammals [My Copy] Nature, Vol. aop, No. current. (27 February 2005) by Xiaohui Xie, Jun Lu, E. J. Kulbokas, et al.Todd R. Golub, Vamsi Mootha, Kerstin Lindblad-Toh, Eric S. Lander, Manolis Kellis posted by 33 people Dulce wowalz maximilianh_otx hagechouchin443 sterovetta kieran101 snuppepuppan BioGeek briann jtextori tmmurali okarsligil jfr balajis lyongu eckart_bindewald mtagaya adepace fisherp nickluscombe panetebrother smiddha franklin oscarluoinau Bioinformatics EisenLab microRNA EBI-regulation heliopais ale emptyhb maralena mariakmejia
	Position specific variation in the rate of evolution in transcription factor binding sites. [My Copy] BMC Evol Biol, Vol. 3, No. 1. (28 August 2003) by A. M. Moses, D. Y. Chiang, M. Kellis, E. S. Lander, M. B. Eisen posted by 9 people briann dpollard adepace lusk nklee EisenLab cisevol cis-regulatory-evolution emptyhb
	Kinetics of Protein-DNA Interaction: Facilitated Target Location in Sequence-Dependent Potential [My Copy] Biophysical Journal, Vol. 87, No. 6. (1 December 2004), pp. 4021-4035. by M. Slutsky posted by 3 people emptyhb blobbybirdman Myxo group
	Functional Specificity of a Hox Protein Mediated by the Recognition of Minor Groove Structure [My Copy] Cell, Vol. 131, No. 3. (02 November 2007), pp. 530-543. by Rohit Joshi, Jonathan M. Passner, Remo Rohs, et al.Rinku Jain, Alona Sosinsky, Michael A. Crickmore, Vinitha Jacob, Aneel K. Aggarwal, Barry Honig, Richard S. Mann posted by 6 people vingron emptyhb cwbrown EisenLab blobbybirdman oelemento
	An evolutionary constraint: Strongly disfavored class of change in DNA sequence during divergence of cis-regulatory modules [My Copy] Proceedings of the National Academy of Sciences, Vol. 102, No. 33. (16 August 2005), pp. 11769-11774. by Andrew R. Cameron, Suk H. Chow, Kevin Berney, et al.Tsz-Yeung Chiu, Qiu-Autumn Yuan, Alexander Kramer, Argelia Helguero, Andrew Ransick, Mirong Yun, Eric H. Davidson posted by 5 people gderwin blobbybirdman cisevol cis-regulatory-evolution emptyhb
	Emerging principles of regulatory evolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. Suppl 1. (15 May 2007), pp. 8605-8612. by Benjamin Prud'homme, Nicolas Gompel, Sean B. Carroll posted by 9 people joebilkobailey daveGerrard athma dpollard EisenLab blobbybirdman cisevol cis-regulatory-evolution emptyhb
	Genome-Wide Mapping of in Vivo Protein-DNA Interactions [My Copy] Science, Vol. 316, No. 5830. (8 June 2007), pp. 1497-1502. by David S. Johnson, Ali Mortazavi, Richard M. Myers, Barbara Wold posted by 30 people oannes daforerog tonamswish ewilban1 aprasad jo_davies aalibes balicea andersbj JeremyZucker aswin kengg giovanni cjeans ghattem zwang epigenetics biomcgary george_g cabbagezs Jporci Bioinformatics microRNA Marcotte_Lab blobbybirdman UH - Computational Biology caseybrown emptyhb Myxo group dquest
	Comparative genomics at the vertebrate extremes. [My Copy] Nat Rev Genet, Vol. 5, No. 6. (June 2004), pp. 456-465. by D. Boffelli, M. A. Nobrega, E. M. Rubin posted by 3 people olympos blobbybirdman emptyhb
	The evolution of genetic regulatory systems in bacteria [My Copy] Nat Rev Genet, Vol. 5, No. 3. (March 2004), pp. 169-178. by Harley H. Mcadams, Balaji Srinivasan, Adam P. Arkin posted by 4 people emptyhb balajis blobbybirdman Myxo group
	Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 2. (22 January 2002), pp. 763-768. by M. Markstein, P. Markstein, V. Markstein, M. S. Levine posted by 4 people emptyhb indigoviolet dpollard EisenLab
	Evolution of genes and genomes on the Drosophila phylogeny. [My Copy] Nature, Vol. 450, No. 7167. (8 November 2007), pp. 203-218. by Drosophila 12 Genomes Consortium, Andrew G. Clark, Michael B. Eisen, et al.Douglas R. Smith, Casey M. Bergman, Brian Oliver, Therese A. Markow, Thomas C. Kaufman, Manolis Kellis, William Gelbart, Venky N. Iyer, Daniel A. Pollard, Timothy B. Sackton, Amanda M. Larracuente, Nadia D. Singh, Jose P. Abad, Dawn N. Abt, Boris Adryan, Montserrat Aguade, Hiroshi Akashi, Wyatt W. Anderson, Charles F. Aquadro, David H. Ardell, Roman Arguello, Carlo G. Artieri, Daniel A. Barbash, Daniel Barker, Paolo Barsanti, Phil Batterham, Serafim Batzoglou, Dave Begun, Arjun Bhutkar, Enrico Blanco, Stephanie A. Bosak, Robert K. Bradley, Adrianne D. Brand, Michael R. Brent, Angela N. Brooks, Randall H. Brown, Roger K. Butlin, Corrado Caggese, Brian R. Calvi, A. Bernardo de Carvalho, Anat Caspi, Sergio Castrezana, Susan E. Celniker, Jean L. Chang, Charles Chapple, Sourav Chatterji, Asif Chinwalla, Alberto Civetta, Sandra W. Clifton, Josep M. Comeron, James C. Costello, Jerry A. Coyne, Jennifer Daub, Robert G. David, Arthur L. Delcher, Kim Delehaunty, Chuong B. Do, Heather Ebling, Kevin Edwards, Thomas Eickbush, Jay D. Evans, Alan Filipski, Sven Findeiss, Eva Freyhult, Lucinda Fulton, Robert Fulton, Ana C. Garcia, Anastasia Gardiner, David A. Garfield, Barry E. Garvin, Greg Gibson, Don Gilbert, Sante Gnerre, Jennifer Godfrey, Robert Good, Valer Gotea, Brenton Gravely, Anthony J. Greenberg, Sam Griffiths-Jones, Samuel Gross, Roderic Guigo, Erik A. Gustafson, Wilfried Haerty, Matthew W. Hahn, Daniel L. Halligan, Aaron L. Halpern, Gillian M. Halter, Mira V. Han, Andreas Heger, LaDeana Hillier, Angie S. Hinrichs, Ian Holmes, Roger A. Hoskins, Melissa J. Hubisz, Dan Hultmark, Melanie A. Huntley, David B. Jaffe, Santosh Jagadeeshan, William R. Jeck, Justin Johnson, Corbin D. Jones, William C. Jordan, Gary H. Karpen, Eiko Kataoka, Peter D. Keightley, Pouya Kheradpour, Ewen F. Kirkness, Leonardo B. Koerich, Karsten Kristiansen, Dave Kudrna, Rob J. Kulathinal, Sudhir Kumar, Roberta Kwok, Eric Lander, Charles H. Langley, Richard Lapoint, Brian P. Lazzaro, So-Jeong J. Lee, Lisa Levesque, Ruiqiang Li, Chiao-Feng F. Lin, Michael F. Lin, Kerstin Lindblad-Toh, Ana Llopart, Manyuan Long, Lloyd Low, Elena Lozovsky, Jian Lu, Meizhong Luo, Carlos A. Machado, Wojciech Makalowski, Mar Marzo, Muneo Matsuda, Luciano Matzkin, Bryant McAllister, Carolyn S. McBride, Brendan McKernan, Kevin McKernan, Maria Mendez-Lago, Patrick Minx, Michael U. Mollenhauer, Kristi Montooth, Stephen M. Mount, Xu Mu, Eugene Myers, Barbara Negre, Stuart Newfeld, Rasmus Nielsen, Mohamed A. Noor, Patrick O'Grady, Lior Pachter, Montserrat Papaceit, Matthew J. Parisi, Michael Parisi, Leopold Parts, Jakob S. Pedersen, Graziano Pesole, Adam M. Phillippy, Chris P. Ponting, Mihai Pop, Damiano Porcelli, Jeffrey R. Powell, Sonja Prohaska, Kim Pruitt, Marta Puig, Hadi Quesneville, Kristipati Ravi R. Ram, David Rand, Matthew D. Rasmussen, Laura K. Reed, Robert Reenan, Amy Reily, Karin A. Remington, Tania T. Rieger, Michael G. Ritchie, Charles Robin, Yu-Hui H. Rogers, Claudia Rohde, Julio Rozas, Marc J. Rubenfield, Alfredo Ruiz, Susan Russo, Steven L. Salzberg, Alejandro Sanchez-Gracia, David J. Saranga, Hajime Sato, Stephen W. Schaeffer, Michael C. Schatz, Todd Schlenke, Russell Schwartz, Carmen Segarra, Rama S. Singh, Laura Sirot, Marina Sirota, Nicholas B. Sisneros, Chris D. Smith, Temple F. Smith, John Spieth, Deborah E. Stage, Alexander Stark, Wolfgang Stephan, Robert L. Strausberg, Sebastian Strempel, David Sturgill, Granger Sutton, Granger G. Sutton, Wei Tao, Sarah Teichmann, Yoshiko N. Tobari, Yoshihiko Tomimura, Jason M. Tsolas, Vera L. Valente, Eli Venter, J. Craig Venter, Saverio Vicario, Filipe G. Vieira, Albert J. Vilella, Alfredo Villasante, Brian Walenz, Jun Wang, Marvin Wasserman, Thomas Watts, Derek Wilson, Richard K. Wilson, Rod A. Wing, Mariana F. Wolfner, Alex Wong, Gane Ka-Shu K. Wong, Chung-I I. Wu, Gabriel Wu, Daisuke Yamamoto, Hsiao-Pei P. Yang, Shiaw-Pyng P. Yang, James A. Yorke, Kiyohito Yoshida, Evgeny Zdobnov, Peili Zhang, Yu Zhang, Aleksey V. Zimin, Jennifer Baldwin, Amr Abdouelleil, Jamal Abdulkadir, Adal Abebe, Brikti Abera, Justin Abreu, St Christophe C. Acer, Lynne Aftuck, Allen Alexander, Peter An, Erica Anderson, Scott Anderson, Harindra Arachi, Marc Azer, Pasang Bachantsang, Andrew Barry, Tashi Bayul, Aaron Berlin, Daniel Bessette, Toby Bloom, Jason Blye, Leonid Boguslavskiy, Claude Bonnet, Boris Boukhgalter, Imane Bourzgui, Adam Brown, Patrick Cahill, Sheridon Channer, Yama Cheshatsang, Lisa Chuda, Mieke Citroen, Alville Collymore, Patrick Cooke, Maura Costello, Katie D'Aco, Riza Daza, Georgius De Haan, Stuart DeGray, Christina DeMaso, Norbu Dhargay, Kimberly Dooley, Erin Dooley, Missole Doricent, Passang Dorje, Kunsang Dorjee, Alan Dupes, Richard Elong, Jill Falk, Abderrahim Farina, Susan Faro, Diallo Ferguson, Sheila Fisher, Chelsea D. Foley, Alicia Franke, Dennis Friedrich, Loryn Gadbois, Gary Gearin, Christina R. Gearin, Georgia Giannoukos, Tina Goode, Joseph Graham, Edward Grandbois, Sharleen Grewal, Kunsang Gyaltsen, Nabil Hafez, Birhane Hagos, Jennifer Hall, Charlotte Henson, Andrew Hollinger, Tracey Honan, Monika D. Huard, Leanne Hughes, Brian Hurhula, M. Erii Husby, Asha Kamat, Ben Kanga, Seva Kashin, Dmitry Khazanovich, Peter Kisner, Krista Lance, Marcia Lara, William Lee, Niall Lennon, Frances Letendre, Rosie LeVine, Alex Lipovsky, Xiaohong Liu, Jinlei Liu, Shangtao Liu, Tashi Lokyitsang, Yeshi Lokyitsang, Rakela Lubonja, Annie Lui, Pen MacDonald, Vasilia Magnisalis, Kebede Maru, Charles Matthews, William McCusker, Susan McDonough, Teena Mehta, James Meldrim, Louis Meneus, Oana Mihai, Atanas Mihalev, Tanya Mihova, Rachel Mittelman, Valentine Mlenga, Anna Montmayeur, Leonidas Mulrain, Adam Navidi, Jerome Naylor, Tamrat Negash, Thu Nguyen, Nga Nguyen, Robert Nicol, Choe Norbu, Nyima Norbu, Nathaniel Novod, Barry O'Neill, Sahal Osman, Eva Markiewicz, Otero L. Oyono, Christopher Patti, Pema Phunkhang, Fritz Pierre, Margaret Priest, Sujaa Raghuraman, Filip Rege, Rebecca Reyes, Cecil Rise, Peter Rogov, Keenan Ross, Elizabeth Ryan, Sampath Settipalli, Terry Shea, Ngawang Sherpa, Lu Shi, Diana Shih, Todd Sparrow, Jessica Spaulding, John Stalker, Nicole Stange-Thomann, Sharon Stavropoulos, Catherine Stone, Christopher Strader, Senait Tesfaye, Talene Thomson, Yama Thoulutsang, Dawa Thoulutsang, Kerri Topham, Ira Topping, Tsamla Tsamla, Helen Vassiliev, Andy Vo, Tsering Wangchuk, Tsering Wangdi, Michael Weiand, Jane Wilkinson, Adam Wilson, Shailendra Yadav, Geneva Young, Qing Yu, Lisa Zembek, Danni Zhong, Andrew Zimmer, Zac Zwirko, David B. Jaffe, Pablo Alvarez, Will Brockman, Jonathan Butler, CheeWhye Chin, Sante Gnerre, Manfred Grabherr, Michael Kleber, Evan Mauceli, Iain MacCallum posted by 43 people aaltenburger biomcgary nuttpo daveGerrard Anachff GustavoLacerda mqbphcw3 rpetrenko gwallau chica jlncdr aprasad gjuggler lizbiogen jbsaltz druvus pradiptaray pengchy operon tmmurali indigoviolet djkt timflutre stajich zwang Garamonfok lp2 Bioinformatics EisenLab CharlesM hpaces caseybrown emptyhb urgi Mycology noor PetrovLab isimpson balicea cisevol BergmanLab Drosophila-Genetics-Genomics-2008 hdopazo
	Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 2. (22 January 2002), pp. 757-762. by Benjamin P. Berman, Yutaka Nibu, Barret D. Pfeiffer, et al.Pavel Tomancak, Susan E. Celniker, Michael Levine, Gerald M. Rubin, Michael B. Eisen posted by 6 people farhat indigoviolet Stew EisenLab emptyhb csdhwang
	Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster [My Copy] PLoS Comput Biol, Vol. 3, No. 1. (19 January 2007), e7. by Thomas A. Down, Casey M. Bergman, Jing Su, Tim J. P. Hubbard posted by 14 people bsamal daveGerrard ychromosome timhubbard lusk wowalz indigoviolet dpollard dquest SeungjoonOh nklee EisenLab emptyhb isimpson
	Extensive low-affinity transcriptional interactions in the yeast genome. [My Copy] Genome Res (29 June 2006) by Amos Tanay posted by 9 people TranscriptionalRegulationWithThermodynamicModels devin indigoviolet dpollard balicea koller lusk EisenLab emptyhb
	Close sequence comparisons are sufficient to identify human cis-regulatory elements. [My Copy] Genome research, Vol. 16, No. 7. (12 July 2006), pp. 855-863. by Shyam Prabhakar, Francis Poulin, Malak Shoukry, et al.Veena Afzal, Edward M. Rubin, Olivier Couronne, Len A. Pennacchio posted by 12 people provero indigoviolet dpollard samal nickluscombe olympos EisenLab EBI-regulation emptyhb bpcusack mariakmejia kcrawlik
	An overview of the structures of protein-DNA complexes [My Copy] Genome Biology, Vol. 1, No. 1. (2000) by Nicholas M. Luscombe, Susan E. Austin, Helen M. Berman, Janet M. Thornton posted by 7 people agustinarce svozil kaarsinogen indigoviolet medic0747 EisenLab emptyhb
	Bicoid determines sharp and precise target gene expression in the Drosophila embryo. [My Copy] Curr Biol, Vol. 15, No. 21. (8 November 2005), pp. 1888-1898. by O. Crauk, N. Dostatni posted by 6 people imouthesmp mystery indigoviolet balicea EisenLab emptyhb
	Aligning multiple genomic sequences with the threaded blockset aligner. [My Copy] Genome research, Vol. 14, No. 4. (April 2004), pp. 708-715. by Mathieu Blanchette, W. James Kent, Cathy Riemer, et al.Laura Elnitski, Arian F. Smit, Krishna M. Roskin, Robert Baertsch, Kate Rosenbloom, Hiram Clawson, Eric D. Green, David Haussler, Webb Miller posted by 15 people roys emptyhb nuin aprasad APRegier operon ujh indigoviolet csardas djkt EisenLab yylin Neeperando maralena AlexanderPico
	Allele-Specific Chromatin Remodeling in the ZPBP2/GSDMB/ORMDL3 Locus Associated with the Risk of Asthma and Autoimmune Disease [My Copy] The American Journal of Human Genetics, Vol. 85, No. 3. (11 September 2009), pp. 377-393. by Dominique J. Verlaan, Soizik Berlivet, Gary M. Hunninghake, et al.Anne-Marie Madore, Mathieu Larivière, Sanny Moussette, Elin Grundberg, Tony Kwan, Manon Ouimet, Bing Ge posted by 2 people pkonings brant
	Single-molecule imaging of DNA curtains reveals intrinsic energy landscapes for nucleosome deposition. [My Copy] Nature structural & molecular biology (6 September 2009) by Mari-Liis L. Visnapuu, Eric C. Greene posted by 1 person brant
	Personalized copy number and segmental duplication maps using next-generation sequencing. [My Copy] Nature genetics, Vol. 41, No. 10. (30 October 2009), pp. 1061-1067. by Can Alkan, Jeffrey M. Kidd, Tomas Marques-Bonet, et al.Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O. Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S. Cenk Sahinalp, Richard A. Gibbs, Evan E. Eichler posted by 32 people ongenetics chvlyl leemachado daed gbenson n00c bozdagd dakelley sbmontgomery eshirdel merpublic shyamsg scmelton qayub natstreet fenghezi Annab djkt nuin xingxu jamesmorris rdiaz brant torfinnnome Journal picks jandot pkonings danmaclean daforerog frohike rschulz gangcai
	Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention. [My Copy] Genome research, Vol. 19, No. 11. (29 November 2009), pp. 2036-2051. by Andrew L. Hufton, Susanne Mathia, Helene Braun, et al.Udo Georgi, Hans Lehrach, Martin Vingron, Albert J. Poustka, Georgia Panopoulou posted by 6 people provero djkt alhufton brant maximilianh Journal picks
	Evolving enhancer-promoter interactions within the tinman complex of the flour beetle, Tribolium castaneum. [My Copy] Development (Cambridge, England), Vol. 136, No. 18. (15 September 2009), pp. 3153-3160. by Jessica Doran D. Cande, Vivek S. Chopra, Michael Levine posted by 5 people cis-regulatory-evolution BergmanLab cisevol brant emmahe
	Intron length increases oscillatory periods of gene expression in animal cells [My Copy] Genes & Development, Vol. 22, No. 17. (1 September 2008), pp. 2342-2346. by Ian A. Swinburne, David G. Miguez, Dirk Landgraf, Pamela A. Silver posted by 4 people inesdesantiago brant Mycology stajich
	Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology [My Copy] Nucl. Acids Res., Vol. 36, No. 19. (1 November 2008), e122. by Richard Cronn, Aaron Liston, Matthew Parks, David S. Gernandt, Rongkun Shen, Todd Mockler posted by 10 people druvus natstreet usagi-kirin reyez mlog pdexheimer abizar ojabado brant aconesa
	Seeder: discriminative seeding DNA motif discovery [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2303-2307. by Francois Fauteux, Mathieu Blanchette, Martina V. Stromvik posted by 9 people bsamal wowalz druvus natstreet nuin brant maximilianh isimpson idonaldson
	The lepidopteran transposon vector, piggyBac, mediates germ-line transformation in the Mediterranean fruit fly. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 13. (23 June 1998), pp. 7520-7525. by A. M. Handler, S. D. McCombs, M. J. Fraser, S. H. Saul posted by 1 person brant
	Medfly transposable elements: diversity, evolution, genomic impact and possible applications. [My Copy] Insect biochemistry and molecular biology, Vol. 34, No. 2. (February 2004), pp. 139-148. by L. M. Gomulski, C. Torti, V. Murelli, M. Bonizzoni, G. Gasperi, A. R. Malacrida posted by 2 people operon brant
	Bactrocera tryoni and closely related pest tephritids--molecular analysis and prospects for transgenic control strategies [My Copy] Insect Biochemistry and Molecular Biology In Insect Transgenesis and its Potential Role in Agriculture, Vol. 34, No. 2. (February 2004), pp. 167-176. by Kathryn A. Raphael, Steven Whyard, Deborah Shearman, Xin An, Marianne Frommer posted by 1 person brant
	The words of the regulatory code are arranged in a variable manner in highly conserved enhancers. [My Copy] Developmental biology, Vol. 318, No. 2. (15 June 2008), pp. 366-377. by Sepand Rastegar, Isabell Hess, Thomas Dickmeis, et al.Jean Christophe C. Nicod, Raymond Ertzer, Yavor Hadzhiev, Wolf-Gerolf G. Thies, Gerd Scherer, Uwe Strähle posted by 5 people lusk maximilianh brant cisevol cis-regulatory-evolution
	Extending Genomics to Natural Communities and Ecosystems [My Copy] Science, Vol. 320, No. 5875. (25 April 2008), pp. 492-495. by Thomas G. Whitham, Stephen P. Difazio, Jennifer A. Schweitzer, et al.Stephen M. Shuster, Gery J. Allan, Joseph K. Bailey, Scott A. Woolbright posted by 10 people natstreet ArtemPankin Khavkin's lab neteler farhat brant jago jlgreen Green Lab iSEEM
	From Genotype to Phenotype: Systems Biology Meets Natural Variation [My Copy] Science, Vol. 320, No. 5875. (25 April 2008), pp. 495-497. by Philip N. Benfey, Thomas Mitchell-Olds posted by 24 people bertelsen balicea maren Ondex SABR - Bioenergy project Keywan VUMCGenomics slevy03 Roswell Cancer Crosstalk R.E.A.D Zephyrus natstreet stringertheory applebyb zwang bootsy echinotrix ArtemPankin Khavkin's lab adacier guhjy ashko kaniko brant daed
	Transcriptional regulation of the Drosophila gene zen by competing Smad and Brinker inputs. [My Copy] Genes & development, Vol. 15, No. 3. (1 February 2001), pp. 340-351. by C. Rushlow, P. F. Colosimo, M. C. Lin, M. Xu, N. Kirov posted by 1 person brant
	hairy mediates dominant repression in the Drosophila embryo. [My Copy] The EMBO journal, Vol. 16, No. 10. (15 May 1997), pp. 2883-2891. by S. Barolo, M. Levine posted by 1 person brant
	Groucho/TLE family proteins and transcriptional repression. [My Copy] Gene, Vol. 249, No. 1-2. (16 May 2000), pp. 1-16. by G. Chen, A. J. Courey posted by 1 person brant
	How many genes in a genome? [My Copy] Genome biology, Vol. 5, No. 1. (2003) by B. Oliver, B. Leblanc posted by 1 person brant
	Specificity, free energy and information content in protein-DNA interactions [My Copy] Trends in Biochemical Sciences, Vol. 23, No. 3. (1 March 1998), pp. 109-113. by Gary D. Stormo, Dana S. Fields posted by 4 people vphan erdos brant zambujo
	In vivo dissection of the Helicobacter pylori Fur regulatory circuit by genome-wide location analysis. [My Copy] Journal of bacteriology, Vol. 188, No. 13. (July 2006), pp. 4654-4662. by A. Danielli, D. Roncarati, I. Delany, V. Chiarini, R. Rappuoli, V. Scarlato posted by 1 person brant
	Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 7. (2 April 2002), pp. 4632-4637. by M. T. Laub, S. L. Chen, L. Shapiro, H. H. McAdams posted by 1 person brant