Israel Barrantes's Top Recommendations

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	The methylome: approaches for global DNA methylation profiling [My Copy] Trends in Genetics, Vol. In Press, Corrected Proof by Stephan Beck, Vardhman K. Rakyan posted by 4 people bertelsen misonneh guhjy kjglennie
	Allelotyping by massively parallel pyrosequencing of SNP-carrying trinucleotide threads. [My Copy] Human mutation, Vol. 29, No. 2. (February 2008), pp. 323-329. by E. Pettersson, P. Zajac, P. L. Ståhl, et al.J. A. Jacobsson, R. Fredriksson, C. Marcus, H. B. Schiöth, J. Lundeberg, A. Ahmadian
	Chlamydia trachomatis: genome sequence analysis of lymphogranuloma venereum isolates. [My Copy] Genome research, Vol. 18, No. 1. (January 2008), pp. 161-171. by N. R. Thomson, M. T. Holden, C. Carder, et al.N. Lennard, S. J. Lockey, P. Marsh, P. Skipp, C. D. O'Connor, I. Goodhead, H. Norbertzcak, B. Harris, D. Ormond, R. Rance, M. A. Quail, J. Parkhill, R. S. Stephens, I. N. Clarke
	RNA sequence analysis defines Dicer's role in mouse embryonic stem cells. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 46. (13 November 2007), pp. 18097-18102. by J. M. Calabrese, A. C. Seila, G. W. Yeo, P. A. Sharp posted by 3 people microRNA tonamswish valeriehilgers
	Complexity reduction of polymorphic sequences (CRoPS): a novel approach for large-scale polymorphism discovery in complex genomes. [My Copy] PLoS ONE, Vol. 2, No. 11. (2007) by N. J. van Orsouw, R. C. Hogers, A. Janssen, et al.F. Yalcin, S. Snoeijers, E. Verstege, H. Schneiders, H. van der Poel, J. van Oeveren, H. Verstegen, M. J. van Eijk
	Genomic and biochemical studies demonstrating the absence of an alkane-producing phenotype in Vibrio furnissii M1. [My Copy] Applied and environmental microbiology, Vol. 73, No. 22. (November 2007), pp. 7192-7198. by L. P. Wackett, J. A. Frias, J. L. Seffernick, D. J. Sukovich, S. M. Cameron
	Identification of novel antipoxviral agents: mitoxantrone inhibits vaccinia virus replication by blocking virion assembly. [My Copy] Journal of virology, Vol. 81, No. 24. (December 2007), pp. 13392-13402. by L. Deng, P. Dai, A. Ciro, D. F. Smee, H. Djaballah, S. Shuman
	SmedGD: the Schmidtea mediterranea genome database. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (January 2008) by S. M. Robb, E. Ross, A. Sánchez Alvarado posted by 2 people ajaymalik orzenil
	Genome analysis of phage JS98 defines a fourth major subgroup of T4-like phages in Escherichia coli. [My Copy] Journal of bacteriology, Vol. 189, No. 22. (November 2007), pp. 8206-8214. by S. Zuber, C. Ngom-Bru, C. Barretto, A. Bruttin, H. Brüssow, E. Denou posted by 1 person kieran101
	Complete genomic sequence and mass spectrometric analysis of highly diverse, atypical Bacillus thuringiensis phage 0305phi8-36. [My Copy] Virology, Vol. 368, No. 2. (25 November 2007), pp. 405-421. by J. A. Thomas, S. C. Hardies, M. Rolando, et al.S. J. Hayes, K. Lieman, C. A. Carroll, S. T. Weintraub, P. Serwer posted by 1 person kieran101
	MamuSNP: a resource for Rhesus Macaque (Macaca mulatta) genomics. [My Copy] PLoS ONE, Vol. 2, No. 5. (2007) by R. S. Malhi, B. Sickler, D. Lin, et al.J. Satkoski, R. Y. Tito, D. George, S. Kanthaswamy, D. G. Smith
	Genome sequence of a clinical isolate of Campylobacter jejuni from Thailand. [My Copy] Infection and immunity, Vol. 75, No. 7. (July 2007), pp. 3425-3433. by F. Poly, T. Read, D. R. Tribble, S. Baqar, M. Lorenzo, P. Guerry
	Activation of TLX3 and NKX2-5 in t(5;14)(q35;q32) T-cell acute lymphoblastic leukemia by remote 3'-BCL11B enhancers and coregulation by PU.1 and HMGA1. [My Copy] Cancer research, Vol. 67, No. 4. (15 February 2007), pp. 1461-1471. by S. Nagel, M. Scherr, A. Kel, et al.K. Hornischer, G. E. Crawford, M. Kaufmann, C. Meyer, H. G. Drexler, R. A. MacLeod
	A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in Zebrafish. [My Copy] Cell, Vol. 129, No. 1. (6 April 2007), pp. 69-82. by Saskia Houwing, Leonie M. Kamminga, Eugene Berezikov, et al.Daniela Cronembold, Angélique Girard, Hans van den Elst, Dmitri V. Filippov, Heiko Blaser, Erez Raz, Cecilia B. Moens, Ronald H. Plasterk, Gregory J. Hannon, Bruce W. Draper, René F. Ketting posted by 1 person altotor
	Role of RNA polymerase IV in plant small RNA metabolism. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 11. (13 March 2007), pp. 4536-4541. by X. Zhang, I. R. Henderson, C. Lu, P. J. Green, S. E. Jacobsen posted by 1 person micromassive
	New insights into Acinetobacter baumannii pathogenesis revealed by high-density pyrosequencing and transposon mutagenesis [My Copy] Genes & Development, Vol. 21, No. 5. (1 March 2007), pp. 601-614. by Michael G. Smith, Tara A. Gianoulis, Stefan Pukatzki, et al.John J. Mekalanos, L. Nicholas Ornston, Mark Gerstein, Michael Snyder posted by 1 person katholt
	The genome of non-O1 Vibrio cholerae NRT36S demonstrates the presence of pathogenic mechanisms that are distinct from those of O1 Vibrio cholerae. [My Copy] Infection and immunity, Vol. 75, No. 5. (May 2007), pp. 2645-2647. by Y. Chen, J. A. Johnson, G. D. Pusch, J. G. Morris, O. C. Stine
	DeepSAGE--digital transcriptomics with high sensitivity, simple experimental protocol and multiplexing of samples. [My Copy] Nucleic acids research, Vol. 34, No. 19. (2006) by K. L. Nielsen, A. L. Høgh, J. Emmersen
	Marek's disease virus encodes MicroRNAs that map to meq and the latency-associated transcript. [My Copy] Journal of virology, Vol. 80, No. 17. (September 2006), pp. 8778-8786. by J. Burnside, E. Bernberg, A. Anderson, et al.C. Lu, B. C. Meyers, P. J. Green, N. Jain, G. Isaacs, R. W. Morgan
	Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis. [My Copy] Nucleic acids research, Vol. 35, No. 1. (2007), pp. 1-10. by M. T. Gilbert, J. Binladen, W. Miller, et al.C. Wiuf, E. Willerslev, H. Poinar, J. E. Carlson, J. H. Leebens-Mack, S. C. Schuster
	Unique Features of a Highly Pathogenic Campylobacter jejuni Strain [My Copy] Infect. Immun., Vol. 74, No. 8. (1 August 2006), pp. 4694-4707. by Dirk Hofreuter, Jennifer Tsai, Robert O. Watson, et al.Veronica Novik, Bill Altman, Michelle Benitez, Christina Clark, Clotilde Perbost, Thomas Jarvie, Lei Du, Jorge E. Galan posted by 1 person katholt
	A Diarylquinoline Drug Active on the ATP Synthase of Mycobacterium tuberculosis [My Copy] Science, Vol. 307, No. 5707. (14 January 2005), pp. 223-227. by Koen Andries, Peter Verhasselt, Jerome Guillemont, et al.Hinrich W. H. Gohlmann, Jean-Marc Neefs, Hans Winkler, Jef Van Gestel, Philip Timmerman, Min Zhu, Ennis Lee, Peter Williams, Didier de Chaffoy, Emma Huitric, Sven Hoffner, Emmanuelle Cambau, Chantal Truffot-Pernot, Nacer Lounis, Vincent Jarlier posted by 1 person katholt
	Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. [My Copy] Current biology : CB, Vol. 18, No. 10. (20 May 2008), pp. 758-762. by C. Addo-Quaye, T. W. Eshoo, D. P. Bartel, M. J. Axtell posted by 7 people natstreet GustavoLacerda microRNA heliopais giovenko stajich Mycology
	Simple tools for assembling and searching high-density picolitre pyrophosphate sequence data. [My Copy] Source code for biology and medicine, Vol. 3 (2008) by N. J. Parker, A. G. Parker posted by 3 people orzenil GustavoLacerda iris42
	Generation of a 3D indexed Petunia insertion database for reverse genetics [My Copy] The Plant Journal, Vol. 54, No. 6. (June 2008), pp. 1105-1114. by Vandenbussche, Michiel, Janssen, et al. Antoine, Zethof, Jan, Van Orsouw, Nathalie, Peters, Janny, Van Eijk, J. T. Michiel, Rijpkema, S. Anneke, Schneiders, Harrie, Santhanam, Parthasarathy, De Been, Mark, Van Tunen, Arjen, Gerats, Tom
	The constituents of Microctonus sp. parasitoid venoms [My Copy] Insect Molecular Biology, Vol. 17, No. 3. (June 2008), pp. 313-324. by Crawford, A. M., Brauning, et al. R., Smolenski, G., Ferguson, C., Barton, D., Wheeler, T. T., Mcculloch, A.
	Pyrosequencing enumerates and contrasts soil microbial diversity [My Copy] The ISME Journal, Vol. 1, No. 4. (05 July 2007), pp. 283-290. by Luiz F. W. Roesch, Roberta R. Fulthorpe, Alberto Riva, et al.George Casella, Alison K. M. Hadwin, Angela D. Kent, Samira H. Daroub, Flavio A. O. Camargo, William G. Farmerie, Eric W. Triplett posted by 6 people seb1 druvus esyoun saina_taidi vrich darioacha
	Phylogenetic classification of short environmental DNA fragments [My Copy] Nucl. Acids Res., Vol. 36, No. 7. (19 February 2008), pp. gkn038-2239. by Lutz Krause, Naryttza N. Diaz, Alexander Goesmann, et al.Scott Kelley, Tim W. Nattkemper, Forest Rohwer, Robert A. Edwards, Jens Stoye posted by 8 people esyoun ematsen dakelley idoerg sriesenfeld skembel hpaces vrich
	Microbial ecology of four coral atolls in the Northern Line Islands. [My Copy] PLoS ONE, Vol. 3, No. 2. (2008) by E. A. Dinsdale, O. Pantos, S. Smriga, et al.R. A. Edwards, F. Angly, L. Wegley, M. Hatay, D. Hall, E. Brown, M. Haynes, L. Krause, E. Sala, S. A. Sandin, R. V. Thurber, B. L. Willis, F. Azam, N. Knowlton, F. Rohwer posted by 2 people iSEEM bluto
	A New Arenavirus in a Cluster of Fatal Transplant-Associated Diseases [My Copy] N Engl J Med, Vol. 358, No. 10. (6 March 2008), pp. 991-998. by Gustavo Palacios, Julian Druce, Lei Du, et al.Thomas Tran, Chris Birch, Thomas Briese, Sean Conlan, Phenix-Lan Quan, Jeffrey Hui, John Marshall, Jan F. Simons, Michael Egholm, Christopher D. Paddock, Wun-Ju Shieh, Cynthia S. Goldsmith, Sherif R. Zaki, Mike Catton, Ian W. Lipkin posted by 2 people oelemento sconlan
	Genomic DNA sequence comparison between two inbred soybean cyst nematode biotypes facilitated by massively parallel 454 micro-bead sequencing [My Copy] Molecular Genetics and Genomics, Vol. 279, No. 5. (May 2008), pp. 535-543. by Bekal, Sadia, Craig, et al. J., Hudson, M., Niblack, T., Domier, L., Lambert, K. posted by 3 people thegoose2 C. elegans / WormBase tharris
	Quality scores and SNP detection in sequencing-by-synthesis systems. [My Copy] Genome research, Vol. 18, No. 5. (22 May 2008), pp. 763-770. by William Brockman, Pablo Alvarez, Sarah Young, et al.Manuel Garber, Georgia Giannoukos, William L. Lee, Carsten Russ, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted by 13 people n00c jonilaserson jsatkosk maren natstreet druvus cap1 caseybrown dbensasson bpb Neeperando sharpton GustavoLacerda
	Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 14. (8 April 2008), pp. 5555-5560. by Yuichi Hongoh, Vineet K. Sharma, Tulika Prakash, et al.Satoko Noda, Todd D. Taylor, Toshiaki Kudo, Yoshiyuki Sakaki, Atsushi Toyoda, Masahira Hattori, Moriya Ohkuma posted by 6 people sficklin vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group Pascalichouchou skato_toyaku
	Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 6. (12 February 2008), pp. 2005-2010. by Wesley D. Swingley, Min Chen, Patricia C. Cheung, et al.Amber L. Conrad, Liza C. Dejesa, Jicheng Hao, Barbara M. Honchak, Lauren E. Karbach, Ahmet Kurdoglu, Surobhi Lahiri, Stephen D. Mastrian, Hideaki Miyashita, Lawrence Page, Pushpa Ramakrishna, Soichirou Satoh, Matthew W. Sattley, Yuichiro Shimada, Heather L. Taylor, Tatsuya Tomo, Tohru Tsuchiya, Zi T. Wang, Jason Raymond, Mamoru Mimuro, Robert E. Blankenship, Jeffrey W. Touchman posted by 5 people jwm alexisfjdufresne vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing. [My Copy] Nucleic acids research, Vol. 35, No. 19. (2007) by Poornima Parameswaran, Roxana Jalili, Li Tao, et al.Shadi Shokralla, Baback Gharizadeh, Mostafa Ronaghi, Andrew Z. Fire posted by 10 people manduca heliopais stubrown iSEEM jlgreen mikheyev jbhiatt pdexheimer alexisfjdufresne slevy03
	Deep Sequencing of Chicken microRNAs [My Copy] BMC Genomics, Vol. 9 (22 April 2008), 185. by Joan Burnside, Ming Ouyang, Amy Anderson, et al.Erin Bernberg, Cheng Lu, Blake C. Meyers, Pamela J. Green, Milos Markis, Grace K. Isaacs, Emily Huang, Robin W. Morgan posted by 2 people heliopais microRNA
	Non-random retention of protein-coding overlapping genes in Metazoa [My Copy] BMC Genomics, Vol. 9, No. 1. (16 April 2008), 174. by Giulia Solda, Mikita Suyama, Paride Pelucchi, et al.Silvia Boi, Alessandro Guffanti, Ermanno Rizzi, Peer Bork, Maria Tenchini, Francesca Ciccarelli posted by 4 people daveGerrard cisevol BergmanLab maximilianh
	The complete genome of an individual by massively parallel DNA sequencing. [My Copy] Nature, Vol. 452, No. 7189. (17 April 2008), pp. 872-876. by David A. Wheeler, Maithreyan Srinivasan, Michael Egholm, et al.Yufeng Shen, Lei Chen, Amy McGuire, Wen He, Yi-Ju J. Chen, Vinod Makhijani, G. Thomas Roth, Xavier Gomes, Karrie Tartaro, Faheem Niazi, Cynthia L. Turcotte, Gerard P. Irzyk, James R. Lupski, Craig Chinault, Xing-zhi Z. Song, Yue Liu, Ye Yuan, Lynne Nazareth, Xiang Qin, Donna M. Muzny, Marcel Margulies, George M. Weinstock, Richard A. Gibbs, Jonathan M. Rothberg posted by 26 people rshe n00c jonilaserson jessopher daforerog behindtherabbit frohike reyez pengchy adijr jo_davies jfr orzenil dullhunk djkt ramensky psique caseybrown melting dbensasson parkinson's disease references bpb Neeperando Huub_odc microbiology_nijmegen guhjy
	A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. [My Copy] PLoS ONE, Vol. 2, No. 12. (2007) by R. Velasco, A. Zharkikh, M. Troggio, et al.D. A. Cartwright, A. Cestaro, D. Pruss, M. Pindo, L. M. Fitzgerald, S. Vezzulli, J. Reid, G. Malacarne, D. Iliev, G. Coppola, B. Wardell, D. Micheletti, T. Macalma, M. Facci, J. T. Mitchell, M. Perazzolli, G. Eldredge, P. Gatto, R. Oyzerski, M. Moretto, N. Gutin, M. Stefanini, Y. Chen, C. Segala, C. Davenport, L. Demattè, A. Mraz, J. Battilana, K. Stormo, F. Costa, Q. Tao, A. Si-Ammour, T. Harkins, A. Lackey, C. Perbost, B. Taillon, A. Stella, V. Solovyev, J. A. Fawcett, L. Sterck, K. Vandepoele, S. M. Grando, S. Toppo, C. Moser, J. Lanchbury, R. Bogden, M. Skolnick, V. Sgaramella, S. K. Bhatnagar, P. Fontana, A. Gutin, Y. Van de Peer, F. Salamini, R. Viola posted by 3 people druvus semrich natstreet
	Rapid comparative genomic analysis for clinical microbiology: The Francisella tularensis paradigm [My Copy] Genome Res. (11 April 2008), gr.071266.107. by Bernard La Scola, Khalid Elkarkouri, Wenjun Li, et al.Tara Wahab, Ghislain Fournous, Jean-Marc Rolain, Silpak Biswas, Michel Drancourt, Catherine Robert, Stephane Audic, Sven Lofdahl, Didier Raoult posted by 2 people druvus tmmurali
	Novel and nodulation-regulated microRNAs in soybean roots [My Copy] BMC Genomics, Vol. 9, No. 1. (10 April 2008), 160. by Senthil Subramanian, Yan Fu, Ramanjulu Sunkar, W. Brad Barbazuk, Jian K. Zhu, Oliver Yu posted by 1 person maren
	Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes. [My Copy] Nature, Vol. 453, No. 7194. (22 May 2008), pp. 534-538. by Oliver H. Tam, Alexei A. Aravin, Paula Stein, et al.Angelique Girard, Elizabeth P. Murchison, Sihem Cheloufi, Emily Hodges, Martin Anger, Ravi Sachidanandam, Richard M. Schultz, Gregory J. Hannon posted by 7 people sebastien_vigneau galka8_diploma natstreet gjuggler rschulz eskay inesdesantiago
	Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa [My Copy] Genome Res., Vol. 18, No. 4. (1 April 2008), pp. 571-584. by Ryan D. Morin, Gozde Aksay, Elena Dolgosheina, et al.Alexander H. Ebhardt, Vincent Magrini, Elaine R. Mardis, Cenk S. Sahinalp, Peter J. Unrau
	Comparative Genomic Analyses of Seventeen Streptococcus pneumoniae Strains: Insights into the Pneumococcal Supragenome [My Copy] J. Bacteriol., Vol. 189, No. 22. (15 November 2007), pp. 8186-8195. by N. Luisa Hiller, Benjamin Janto, Justin S. Hogg, et al.Robert Boissy, Susan Yu, Evan Powell, Randy Keefe, Nathan E. Ehrlich, Kai Shen, Jay Hayes, Karen Barbadora, William Klimke, Dmitry Dernovoy, Tatiana Tatusova, Julian Parkhill, Stephen D. Bentley, J. Christopher Post, Garth D. Ehrlich, Fen Z. Hu posted by 2 people katholt operon
	Comparative genomic analysis of Mycobacterium avium subspecies obtained from multiple host species [My Copy] BMC Genomics, Vol. 9 (20 March 2008), 135. by Michael L. Paustian, Xiaochun Zhu, Srinand Sreevatsan, Suelee Robbe-Austerman, Vivek Kapur, John P. Bannantine
	Functional metagenomic profiling of nine biomes [My Copy] Nature, Vol. 452, No. 7187. (12 March 2008), pp. 629-632. by Elizabeth A. Dinsdale, Robert A. Edwards, Dana Hall, et al.Florent Angly, Mya Breitbart, Jennifer M. Brulc, Mike Furlan, Christelle Desnues, Matthew Haynes, Linlin Li, Lauren McDaniel, Mary A. Moran, Karen E. Nelson, Christina Nilsson, Robert Olson, John Paul, Beltran R. Brito, Yijun Ruan, Brandon K. Swan, Rick Stevens, David L. Valentine, Rebecca V. Thurber, Linda Wegley, Bryan A. White, Forest Rohwer posted by 24 people idoerg Thaverkamp shuzhens Savage Lab, UCLA anphony michaelbarton azazello skembel guhjy djkt neils kinestetika microbiology_nijmegen bluto oelemento alexisfjdufresne vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group jmeppley vrich jlgreen Green Lab iSEEM
	Genome-wide expression profiling of the Arabidopsis female gametophyte identifies families of small, secreted proteins. [My Copy] PLoS Genet, Vol. 3, No. 10. (October 2007), pp. 1848-1861. by M. W. Jones-Rhoades, J. O. Borevitz, D. Preuss posted by 1 person kengg
	Survey of bacterial diversity in chronic wounds using Pyrosequencing, DGGE, and full ribosome shotgun sequencing [My Copy] BMC Microbiology, Vol. 8 (06 March 2008), 43. by Scot E. Dowd, Yan Sun, Patrick R. Secor, et al.Daniel D. Rhoads, Benjamin M. Wolcott, Garth A. James, Randall D. Wolcott posted by 1 person esyoun
	Biodiversity and biogeography of phages in modern stromatolites and thrombolites [My Copy] Nature (02 March 2008) by Christelle Desnues, Beltran Rodriguez-Brito, Steve Rayhawk, et al.Scott Kelley, Tuong Tran, Matthew Haynes, Hong Liu, Mike Furlan, Linda Wegley, Betty Chau, Yijun Ruan, Dana Hall, Florent E. Angly, Robert A. Edwards, Linlin Li, Rebecca V. Thurber, Pamela R. Reid, Janet Siefert, Valeria Souza, David L. Valentine, Brandon K. Swan, Mya Breitbart, Forest Rohwer posted by 5 people dayjm jlgreen Green Lab iSEEM djkt
	Identification of novel and candidate miRNAs in rice by high throughput sequencing [My Copy] BMC Plant Biology, Vol. 8 (29 February 2008), 25. by Ramanjulu Sunkar, Xuefeng Zhou, Yun Zheng, Weixiong Zhang, Jian-Kang Zhu posted by 3 people orzenil pengchy natstreet
	Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex [My Copy] Nature Methods, Vol. 5, No. 3. (10 February 2008), pp. 235-237. by Micah Hamady, Jeffrey J. Walker, J. Kirk Harris, Nicholas J. Gold, Rob Knight posted by 12 people natstreet druvus stubrown sandfire iSEEM jlgreen jbhiatt skembel pdexheimer guhjy slevy03 sconlan
	Scanning the human genome at kilobase resolution. [My Copy] Genome Res (21 February 2008) by Jun Chen, Yeong C C. Kim, Yong-Chul C. Jung, et al.Zhenyu Xuan, Geoff Dworkin, Yanming Zhang, Michael Q Q. Zhang, San Ming M. Wang posted by 3 people APRegier inesdesantiago guhjy
	The Macaque Gut Microbiome in Health, Lentiviral Infection, and Chronic Enterocolitis [My Copy] PLoS Pathog, Vol. 4, No. 2. (1 February 2008), e20. by Philip McKenna, Christian Hoffmann, Nana Minkah, et al.Pyone P. Aye, Andrew Lackner, Zongzhi Liu, Catherine A. Lozupone, Micah Hamady, Rob Knight, Frederic D. Bushman posted by 3 people druvus skembel wenhan
	Clonal Integration of a Polyomavirus in Human Merkel Cell Carcinoma [My Copy] Science, Vol. 319, No. 5866. (22 February 2008), pp. 1096-1100. by Huichen Feng, Masahiro Shuda, Yuan Chang, Patrick S. Moore posted by 6 people OKA barneb davidlott caseybrown Dorkins serioussyrian
	The birth and death of microRNA genes in Drosophila. [My Copy] Nature genetics, Vol. 40, No. 3. (17 March 2008), pp. 351-355. by Jian Lu, Yang Shen, Qingfa Wu, et al.Supriya Kumar, Bin He, Suhua Shi, Richard W. Carthew, San Ming M. Wang, Chung-I I. Wu posted by 12 people microRNA heliopais hrogers daforerog valeriehilgers djkt bootsy emptyhb cellison megraw stajich Mycology
	Insights into the genome of large sulfur bacteria revealed by analysis of single filaments. [My Copy] PLoS biology, Vol. 5, No. 9. (28 September 2007), e230. by M. Mussmann, F. Z. Hu, M. Richter, et al.D. de Beer, A. Preisler, B. B. Jørgensen, M. Huntemann, F. O. Glöckner, R. Amann, W. J. Koopman, R. S. Lasken, B. Janto, J. Hogg, P. Stoodley, R. Boissy, G. D. Ehrlich posted by 3 people michaelbarton skato_toyaku kinestetika
	MEGAN analysis of metagenomic data. [My Copy] Genome research, Vol. 17, No. 3. (March 2007), pp. 377-386. by Daniel H. Huson, Alexander F. Auch, Ji Qi, Stephan C. Schuster posted by 17 people taylor73 esyoun dakelley Thaverkamp druvus idoerg guhjy treangen jmeppley azazello wenhan carpi alexl mjetten anammox microbiology_nijmegen hpaces
	Genomic degradation of a young Y chromosome in Drosophila miranda [My Copy] Genome Biology, Vol. 9, No. 2. (2008) by Doris Bachtrog, Emily Hom, Karen Wong, Xulio Maside, Pieter de Jong posted by 3 people operon djkt jjheck
	Metagenomics: Read Length Matters [My Copy] Appl. Environ. Microbiol., Vol. 74, No. 5. (1 March 2008), pp. 1453-1463. by K. Eric Wommack, Jaysheel Bhavsar, Jacques Ravel posted by 16 people jbhiatt skembel Papers recommended by the Roscoff Plankton Group vaulot djkt iSEEM jmeppley azazello Microbial-Ecology microbiology_nijmegen Thaverkamp skato_toyaku rvgomes alexisfjdufresne alexl bluto
	Short read fragment assembly of bacterial genomes [My Copy] Genome Research, Vol. 18, No. 2. (1 February 2008), pp. 324-330. by Mark J. Chaisson, Pavel A. Pevzner posted by 18 people n00c pachorip APRegier thegoose2 dakelley Neeperando hpaces idoerg druvus jasontsai acn orzenil azazello GustavoLacerda dandaman caseybrown iris42 tharris
	Pyrobayes: an improved base caller for SNP discovery in pyrosequences [My Copy] Nat Meth, Vol. 5, No. 2. (13 February 2008), pp. 179-181. by Aaron R. Quinlan, Donald A. Stewart, Michael P. Stromberg, Gabor T. Marth posted by 11 people n00c jonilaserson natstreet druvus hpaces orzenil jmeppley azazello gatech-compgenomics guhjy mariakmejia
	From the Cover: Gene family encoding the major toxins of lethal Amanita mushrooms [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 48. (27 November 2007), pp. 19097-19101. by Heather E. Hallen, Hong Luo, John S. Scott-Craig, Jonathan D. Walton posted by 2 people stajich Mycology
	Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis [My Copy] BMC Molecular Biology, Vol. 9 (14 January 2008), 6. by Hailing Jin, Vladimir Vacic, Thomas Girke, Stefano Lonardi, Jian-Kang Zhu posted by 4 people hagechouchin443 natstreet cisevol BergmanLab
	Using 454 technology for long-PCR based sequencing of the complete mitochondrial genome from single Haemonchus contortus (Nematoda) [My Copy] BMC Genomics, Vol. 9 (11 January 2008), 11. by Aaron R. Jex, Min Hu, Timothy, Andrea Waeschenbach, Robin B. Gasser
	From micrograms to picograms: quantitative PCR reduces the material demands of high-throughput sequencing. [My Copy] Nucleic acids research, Vol. 36, No. 1. (15 January 2008), gkm1095. by M. Meyer, A. W. Briggs, T. Maricic, et al.B. Höber, B. Höffner, J. Krause, A. Weihmann, S. Pääbo, M. Hofreiter posted by 5 people clearbluespring usagi-kirin brdwilde guhjy slevy03
	Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci [My Copy] Genes & Development, Vol. 22, No. 1. (1 January 2008), pp. 26-36. by David M. Tyler, Katsutomo Okamura, Wei-Jen Chung, et al.Joshua W. Hagen, Eugene Berezikov, Gregory J. Hannon, Eric C. Lai posted by 9 people danaiancu valeriehilgers dchughes sebastien_vigneau bootsy Alexander_Kanitz maralena heliopais microRNA
	Conservation and divergence of microRNAs in Populus. [My Copy] BMC genomics, Vol. 8 (31 December 2007), 481. by Abdelali Barakat, Phillip K. Wall, Scott Diloreto, Claude W. Depamphilis, John E. Carlson posted by 3 people orzenil samgj natstreet
	The complete genome sequence of Campylobacter jejuni strain 81116 (NCTC11828). [My Copy] J Bacteriol, Vol. 189, No. 22. (November 2007), pp. 8402-8403. by B. M. Pearson, D. J. Gaskin, R. P. Segers, J. M. Wells, P. J. Nuijten, A. H. van Vliet posted by 1 person hpaces
	Paradoxical DNA Repair and Peroxide Resistance Gene Conservation in Bacillus pumilus SAFR-032. [My Copy] PLoS ONE, Vol. 2, No. 9. (2007) by J. Gioia, S. Yerrapragada, X. Qin, et al.H. Jiang, O. C. Igboeli, D. Muzny, S. Dugan-Rocha, Y. Ding, A. Hawes, W. Liu, L. Perez, C. Kovar, H. Dinh, S. Lee, L. Nazareth, P. Blyth, M. Holder, C. Buhay, M. R. Tirumalai, Y. Liu, I. Dasgupta, L. Bokhetache, M. Fujita, F. Karouia, P. Eswara Moorthy, J. Siefert, A. Uzman, P. Buzumbo, A. Verma, H. Zwiya, B. D. McWilliams, A. Olowu, K. D. Clinkenbeard, D. Newcombe, L. Golebiewski, J. F. Petrosino, W. L. Nicholson, G. E. Fox, K. Venkateswaran, S. K. Highlander, G. M. Weinstock posted by 1 person hpaces
	Sense from sequence reads: methods for alignment and assembly [My Copy] Nat Meth, Vol. 6, No. 11s. (15 November 2009), pp. S6-S12. by Paul Flicek, Ewan Birney posted by 15 people pst owenlancaster Orengo Group Journal Picks robertrentzsch oannes74 Thaverkamp jasontsai natstreet seb1 druvus chvlyl GeeSharpMinor n00c venancio desany
	Computational methods for discovering structural variation with next-generation sequencing [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S13-S20. by Paul Medvedev, Monica Stanciu, Michael Brudno posted by 20 people seb1 pst owenlancaster Orengo Group Journal Picks robertrentzsch oannes74 toszko kiekyon michaelbarton jasontsai sameersoi heliopais druvus GeeSharpMinor Peiyong n00c gdv desany Journal picks qayub
	Cancer genome sequencing: a review [My Copy] Hum. Mol. Genet., Vol. 18, No. R2. (15 October 2009), pp. R163-168. by Elaine R. Mardis, Richard K. Wilson posted by 3 people dakelley desany jmanning2k
	Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. [My Copy] Cell host & microbe, Vol. 3, No. 4. (17 April 2008), pp. 213-223. by P. J. Turnbaugh, F. Bäckhed, L. Fulton, J. I. Gordon posted by 1 person Zephyrus
	Altered utilization of N-acetyl-D-galactosamine by Escherichia coli O157:H7 from the 2006 spinach outbreak. [My Copy] Journal of bacteriology, Vol. 190, No. 5. (March 2008), pp. 1710-1717. by A. Mukherjee, M. K. Mammel, J. E. LeClerc, T. A. Cebula
	RNA-directed RNA polymerase (RdR) 3 from Nicotiana attenuata is required for competitive growth in natural environments. [My Copy] Plant physiology (14 May 2008) by Shree P P. Pandey, Emmanuel Gaquerel, Klaus Gase, Ian T T. Baldwin
	Genome sequence of Brucella abortus vaccine strain S19 compared to virulent strains yields candidate virulence genes. [My Copy] PLoS ONE, Vol. 3, No. 5. (2008) by O. R. Crasta, O. Folkerts, Z. Fei, et al.S. P. Mane, C. Evans, S. Martino-Catt, B. Bricker, G. Yu, L. Du, B. W. Sobral
	Genome analysis of a Glossina pallidipes salivary gland hypertrophy virus reveals a novel, large, double-stranded circular DNA virus. [My Copy] Journal of virology, Vol. 82, No. 9. (May 2008), pp. 4595-4611. by A. M. Abd-Alla, F. Cousserans, A. G. Parker, et al.J. A. Jehle, N. J. Parker, J. M. Vlak, A. S. Robinson, M. Bergoin
	DNA bar coding and pyrosequencing to analyze adverse events in therapeutic gene transfer. [My Copy] Nucleic acids research, Vol. 36, No. 9. (May 2008) by G. P. Wang, A. Garrigue, A. Ciuffi, et al.K. Ronen, J. Leipzig, C. Berry, C. Lagresle-Peyrou, F. Benjelloun, S. Hacein-Bey-Abina, A. Fischer, M. Cavazzana-Calvo, F. D. Bushman
	Direct resequencing of the complete ERBB2 coding sequence reveals an absence of activating mutations in ERBB2 amplified breast cancer. [My Copy] Genes, chromosomes & cancer, Vol. 47, No. 7. (July 2008), pp. 633-638. by C. I. Zito, D. Riches, J. Kolmakova, J. Simons, M. Egholm, D. F. Stern
	Viral population estimation using pyrosequencing. [My Copy] PLoS computational biology, Vol. 4, No. 4. (9 April 2008), e1000074. by Nicholas Eriksson, Lior Pachter, Yumi Mitsuya, et al.Soo-Yon Y. Rhee, Chunlin Wang, Baback Gharizadeh, Mostafa Ronaghi, Robert W. Shafer, Niko Beerenwinkel posted by 9 people nfparrish SIMR bioinformatics ghattem jonilaserson hpaces jmeppley bmaust djkt iSEEM
	Species detection using environmental DNA from water samples. [My Copy] Biology letters (9 April 2008) by Gentile Francesco F. Ficetola, Claude Miaud, François Pompanon, Pierre Taberlet posted by 1 person orzenil
	Whole genome pyrosequencing of an epidemic multidrug resistant Acinetobacter baumannii of the European clone II. [My Copy] Antimicrobial agents and chemotherapy (14 April 2008) by Michele Iacono, Laura Villa, Daniela Fortini, et al.Roberta Bordoni, Francesco Imperi, Raoul J P J. Bonnal, Thomas Sicheritz-Ponten, Gianluca De Bellis, Paolo Visca, Antonio Cassone, Alessandra Carattoli
	Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids. [My Copy] Journal of biotechnology (20 March 2008) by Andreas Tauch, Jessica Schneider, Rafael Szczepanowski, et al.Alexandra Tilker, Prisca Viehoever, Karl-Heinz H. Gartemann, Walter Arnold, Jochen Blom, Karina Brinkrolf, Iris Brune, Susanne Götker, Bernd Weisshaar, Alexander Goesmann, Marcus Dröge, Alfred Pühler posted by 1 person sconlan
	The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing. [My Copy] Journal of biotechnology (10 March 2008) by Andreas Tauch, Eva Trost, Alexandra Tilker, et al.Ulrike Ludewig, Susanne Schneiker, Alexander Goesmann, Walter Arnold, Thomas Bekel, Karina Brinkrolf, Iris Brune, Susanne Götker, Jörn Kalinowski, Paul-Bertram B. Kamp, Francisco Pereira P. Lobo, Prisca Viehoever, Bernd Weisshaar, Francisco Soriano, Marcus Dröge, Alfred Pühler
	Helicobacter pylori evolution during progression from chronic atrophic gastritis to gastric cancer and its impact on gastric stem cells. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 11. (18 March 2008), pp. 4358-4363. by M. Giannakis, S. L. Chen, S. M. Karam, L. Engstrand, J. I. Gordon
	Sequence determination of a mildly virulent strain (CU-2) of Gallid herpesvirus type 2 using 454 pyrosequencing. [My Copy] Virus genes, Vol. 36, No. 3. (June 2008), pp. 479-489. by S. J. Spatz, C. A. Rue
	Mutation in the transcriptional regulator PhoP contributes to avirulence of Mycobacterium tuberculosis H37Ra strain. [My Copy] Cell host & microbe, Vol. 3, No. 2. (14 February 2008), pp. 97-103. by J. S. Lee, R. Krause, J. Schreiber, et al.H. J. Mollenkopf, J. Kowall, R. Stein, B. Y. Jeon, J. Y. Kwak, M. K. Song, J. P. Patron, S. Jorg, K. Roh, S. N. Cho, S. H. Kaufmann
	A probabilistic method for small RNA flowgram matching. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 75-86. by V. Vacic, H. Jin, J. K. Zhu, S. Lonardi posted by 1 person mmartin
	PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 8. (26 February 2008), pp. 3145-3150. by Rebecca A. Mosher, Frank Schwach, David Studholme, David C. Baulcombe posted by 2 people natstreet micromassive
	Herbivory-induced changes in the small-RNA transcriptome and phytohormone signaling in Nicotiana attenuata. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 12. (25 March 2008), pp. 4559-4564. by S. P. Pandey, P. Shahi, K. Gase, I. T. Baldwin posted by 2 people kathrynmrobinson natstreet
	Argonaute loading improves the 5' precision of both MicroRNAs and their miRNA strands in flies. [My Copy] Current biology : CB, Vol. 18, No. 2. (22 January 2008), pp. 147-151. by H. Seitz, M. Ghildiyal, P. D. Zamore posted by 3 people microRNA heliopais valeriehilgers
	Parallel tagged sequencing on the 454 platform [My Copy] Nature Protocols, Vol. 3, No. 2. (31 January 2008), pp. 267-278. by Matthias Meyer, Udo Stenzel, Michael Hofreiter posted by 7 people heliopais n00c jandot GeeSharpMinor maren slevy03 guhjy
	Systematic Identification of C. elegans miRISC Proteins, miRNAs, and mRNA Targets by Their Interactions with GW182 Proteins AIN-1 and AIN-2 [My Copy] Molecular Cell, Vol. 28, No. 4. (30 November 2007), pp. 598-613. by L. Zhang, L. Ding, T. Cheung, et al.M. Dong, J. Chen, A. Sewell, X. Liu, J. Yatesiii, M. Han posted by 3 people thegoose2 C. elegans / WormBase tharris
	A novel class of bacteria-induced small RNAs in Arabidopsis. [My Copy] Genes & development, Vol. 21, No. 23. (1 December 2007), pp. 3123-3134. by S. Katiyar-Agarwal, S. Gao, A. Vivian-Smith, H. Jin posted by 1 person ozyjul
	Variable-number tandem repeats as molecular markers for biotypes of Pasteuria ramosa in Daphnia spp. [My Copy] Applied and environmental microbiology, Vol. 73, No. 11. (June 2007), pp. 3715-3718. by L. Mouton, G. Nong, J. F. Preston, D. Ebert
	A novel linear plasmid mediates flagellar variation in Salmonella Typhi. [My Copy] PLoS pathogens, Vol. 3, No. 5. (11 May 2007) by S. Baker, J. Hardy, K. E. Sanderson, et al.M. Quail, I. Goodhead, R. A. Kingsley, J. Parkhill, B. Stocker, G. Dougan
	Identification of novel high-frequency DNA methylation changes in breast cancer. [My Copy] PLoS ONE, Vol. 2, No. 12. (2007) by J. M. Ordway, M. A. Budiman, Y. Korshunova, et al.R. K. Maloney, J. A. Bedell, R. W. Citek, B. Bacher, S. Peterson, T. Rohlfing, J. Hall, R. Brown, N. Lakey, R. W. Doerge, R. A. Martienssen, J. Leon, J. D. McPherson, J. A. Jeddeloh posted by 2 people mdperry misonneh
	Role of PSIP1/LEDGF/p75 in lentiviral infectivity and integration targeting. [My Copy] PLoS ONE, Vol. 2, No. 12. (2007) by H. M. Marshall, K. Ronen, C. Berry, et al.M. Llano, H. Sutherland, D. Saenz, W. Bickmore, E. Poeschla, F. D. Bushman
	Parallel genomic evolution and metabolic interdependence in an ancient symbiosis. [My Copy] Proc Natl Acad Sci U S A (28 November 2007) by John P P. McCutcheon, Nancy A A. Moran posted by 1 person operon
	Genomic plasticity in prokaryotes: the case of the square haloarchaeon. [My Copy] ISME J, Vol. 1, No. 3. (July 2007), pp. 235-245. by S. Cuadros-Orellana, A. B. Martin-Cuadrado, B. Legault, et al.G. D'Auria, O. Zhaxybayeva, R. T. Papke, F. Rodriguez-Valera posted by 4 people operon jmeppley balicea hpaces