ethkim's Top Recommendations

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	Evidence for dynamically organized modularity in the yeast protein\|[ndash]\|protein interaction network [My Copy] Nature, Vol. 430, No. 6995. (09 June 2004), pp. 88-93. by Jing-Dong J. Han, Nicolas Bertin, Tong Hao, et al.Debra S. Goldberg, Gabriel F. Berriz, Lan V. Zhang, Denis Dupuy, Albertha J. M. Walhout, Michael E. Cusick, Frederick P. Roth, Marc Vidal posted by 34 people aceol daveGerrard colmryan mgomes saket lawraga diamantis davidecellai dragonrez lfriedl balajis yoh j3xucite kintoki koller mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes winterschlaefer kdl Evangelia cdeane shung phoenixzxl stefanoallesina ellakat frohike shikin GeneGo ksiek carlk
	A comprehensive analysis of protein\|[ndash]\|protein interactions in Saccharomyces cerevisiae [My Copy] Nature, Vol. 403, No. 6770. (10 February 2000), pp. 623-627. by Peter Uetz, Loic Giot, Gerard Cagney, et al.Traci A. Mansfield, Richard S. Judson, James R. Knight, Daniel Lockshon, Vaibhav Narayan, Maithreyan Srinivasan, Pascale Pochart, Alia Qureshi-Emili, Ying Li, Brian Godwin, Diana Conover, Theodore Kalbfleisch, Govindan Vijayadamodar, Meijia Yang, Mark Johnston, Stanley Fields, Jonathan M. Rothberg posted by 22 people aceol mtaschuk nzm mgomes lawraga semin dragonrez bicko shivaram lfriedl chad_davis j3xucite dyermd timflutre ruvido gcalda grahamc laughcry kdl hplatero csanford carlk
	A comprehensive two-hybrid analysis to explore the yeast protein interactome. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 8. (10 April 2001), pp. 4569-4574. by T. Ito, T. Chiba, R. Ozawa, M. Yoshida, M. Hattori, Y. Sakaki posted by 23 people aceol MarcJungbluth chica lawraga semin kristallreiner adiel dragonrez okarsligil lfriedl chad_davis balajis nuke2005 kengg ruvido gcalda lpfernandes kdl Bioinformatics shikin hplatero csanford carlk
	Gaining confidence in high-throughput protein interaction networks. [My Copy] Nature biotechnology, Vol. 22, No. 1. (January 2004), pp. 78-85. by Joel S. Bader, Amitabha Chaudhuri, Jonathan M. Rothberg, John Chant posted by 19 people aceol carlk chica anf dakelley lawraga wenhui ocs dragonrez lfriedl gurkanbebek raiyar cjeans iris_2001 patrycjam patrycja_missiuro kdl Evangelia ellakat
	Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941. by Philip M. Kim, Long J. Lu, Yu Xia, Mark B. Gerstein posted by 27 people daveGerrard ucbcjbm pablocarb mgomes rsaito MatthiasReimann cerca bicko lfriedl chad_davis Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes structural_bioinformatics kdl cdeane Pao-Yang phoenixzxl carlk paolomarcatili saket
	A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data [My Copy] Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453. by Ronald Jansen, Haiyuan Yu, Dov Greenbaum, et al.Yuval Kluger, Nevan J. Krogan, Sambath Chung, Andrew Emili, Michael Snyder, Jack F. Greenblatt, Mark Gerstein posted by 27 people cjm rsaito cerca hagechouchin443 aelef Robinder lfriedl balajis opheliav yuval wnpx nickluscombe ruvido raiyar massivemayhem kdang dbgrant nedwards karfunkel kdl EBI-regulation Evangelia shung phoenixzxl penpen926 carlk frohike
	Functional cartography of complex metabolic networks [My Copy] Nature, Vol. 433, No. 7028. (24 February 2005), pp. 895-900. by Roger Guimera, Luis A. Nunes Amaral posted by 28 people schwartzjmc tomt21 lawraga Scis0000002 vtraag cgaugain pdelosri cswinburne camster dbk BioGeek Borelli lfriedl balajis alexg eweaver tny wnpx cjeans kdang carlk RobMills streptomyces dbk-lab kdl Bioinformatics Diego_Prada marcio
	Collective dynamics of \|[lsquo]\|small-world\|[rsquo]\| networks [My Copy] Nature, Vol. 393, No. 6684. (04 June 1998), pp. 440-442. by Duncan J. Watts, Steven H. Strogatz posted by 129 people gena mittinatten arkas andreassorge Sergey_gerbek tonyony vgauthier halukbingol rrbarb dannya222 jsaramak christianholz kentz ptony82 TomHubbard fastjoe23 soramame_0518 jaia normaali leonglester makrehchi makukha fierykylin briordan vtraag dexter_shen AJCann eLearning in Leicester jobadge thegoose2 tomasha apeyrache acrmartins sergiun Kovanen orahcio theus Adso mattjb dpf kaarsinogen cswinburne jmenche Network Data Repository chrisdubois C. elegans / WormBase tharris MehdiMoussaid jobriath camster G_RAM kewms KAllendoerfer AdrianMiles mague alexisgallagher zqshen shivaram cmmorel Shirakawa tolosoft nithya nygaard balicea dumpa matteodellamico yoh dullhunk voiklis eldaly ianturton merazzle maqbes muraken zono zeroknowledge choonpeng cerkut xinian mmartin king amac adriandefroment RafG radale jaspervoskuilen timflutre pbrandao sugaya ruvido rsantana cjeans fbaroni michaelmampaey rcrane ransombriggs suizan lpfernandes dbk-lab GraphVis Semantic-Social-Networks microRNA Web2 Soslab CooperationStudies ColDyn contact-id ADMiRes sbianco 8_01 kb kaks stefanoallesina beete ladamic iris_2001 livingthingdan jsanpedro jotwin ulmer takeha-e dylanwalker mpotamias jpbarrette Borelli jago ddahlem ilkert tomhebbron
	Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners. [My Copy] PLoS computational biology, Vol. 3, No. 4. (27 April 2007), e43. by Benjamin A. Shoemaker, Anna R. Panchenko posted by 27 people dfdong aceol colmryan timg cerca jperkins chica kiekyon kshameer zdai Robinder giovenko Yanno guhjy aalibes bicko jfr chad_davis cjeans iris_2001 zwang lpfernandes groepl carlk Evangelia higueruelo phoenixzxl
	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by Michael Ashburner, Catherine A. Ball, Judith A. Blake, et al.David Botstein, Heather Butler, J. Michael Cherry, Allan P. Davis, Kara Dolinski, Selina S. Dwight, Janan T. Eppig, Midori A. Harris, David P. Hill, Laurie Issel-Tarver, Andrew Kasarskis, Suzanna Lewis, John C. Matese, Joel E. Richardson, Martin Ringwald, Gerald M. Rubin, Gavin Sherlock posted by 87 people josepe krapnik 8_01 suizan sanchezbuelna Jporci artaban421 mtaschuk niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick BTS-PT-AS-CS vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele kdl Bioinformatics EisenLab T_lab biomedical-nlp CitoJam pablomendes carlk marck dgront roys rvosa FAB-lab fongenae
	Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae [My Copy] Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11. by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, et al.Bobby J. Breitkreutz, Gary Hon, Chad Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga Troyanskya, Trey Ideker, Kara Dolinski, Nizar Batada, Mike Tyers posted by 22 people carlk snuppepuppan tmmurali lfriedl balajis wnpx nickluscombe egralla citecat noano koller grahamc iris_2001 sgoetz kdl EBI-regulation shikin s041629 GeneGo pmendes mtruksa chasmand
	Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. [My Copy] Nature, Vol. 415, No. 6868. (10 January 2002), pp. 180-183. by Yuen Ho, Albrecht Gruhler, Adrian Heilbut, et al.Gary D. Bader, Lynda Moore, Sally-Lin L. Adams, Anna Millar, Paul Taylor, Keiryn Bennett, Kelly Boutilier, Lingyun Yang, Cheryl Wolting, Ian Donaldson, Søren Schandorff, Juanita Shewnarane, Mai Vo, Joanne Taggart, Marilyn Goudreault, Brenda Muskat, Cris Alfarano, Danielle Dewar, Zhen Lin, Katerina Michalickova, Andrew R. Willems, Holly Sassi, Peter A. Nielsen, Karina J. Rasmussen, Jens R. Andersen, Lene E. Johansen, Lykke H. Hansen, Hans Jespersen, Alexandre Podtelejnikov, Eva Nielsen, Janne Crawford, Vibeke Poulsen, Birgitte D. Sørensen, Jesper Matthiesen, Ronald C. Hendrickson, Frank Gleeson, Tony Pawson, Michael F. Moran, Daniel Durocher, Matthias Mann, Christopher W. Hogue, Daniel Figeys, Mike Tyers posted by 17 people lpfernandes SarahW lawraga semin okarsligil bicko shivaram lfriedl chad_davis lyongu gcalda raiyar helenamistry kdl Bioinformatics steinmetzlab iris_2001
	Network biology: understanding the cell's functional organization. [My Copy] Nature reviews. Genetics, Vol. 5, No. 2. (February 2004), pp. 101-113. by Albert-László L. Barabási, Zoltán N. Oltvai posted by 51 people schwartzjmc daforerog fastjoe23 arsyed thepogoman mtagaya camster snuppepuppan dbk greg guhjy LeightonP hununu felciano mague kuhn textoris rhem1224 lfriedl balajis alexg wnpx jknabe adepace nickluscombe bundschu awooga jdiggans jeremymiller uprock timflutre mikaelhuss gcalda grahamc fishtank jayster4 naegele streptomyces dbk-lab kdl EisenLab TCR_Signaling EBI-regulation SysbioMPI-TCells GeschwindLab generif_paper Evangelia heliopais shikin GeneGo hryk
	The large-scale organization of metabolic networks [My Copy] Nature, Vol. 407, No. 6804. (05 October 2000), pp. 651-654. by H. Jeong, B. Tombor, R. Albert, Z. N. Oltvai, A. L. Barabasi posted by 34 people jmenche tomhebbron asadrahman sergiun GEB dlobo schwartzjmc muraken kentz camster snuppepuppan jpmague mague alexisgallagher bjorns Borelli shivaram lfriedl cmmorel alexg Shirakawa ddahlem gcalda grahamc jrbanga karfunkel dbk-lab kdl Evangelia shung pmendes stefanoallesina shikin dylanwalker
	Conserved patterns of protein interaction in multiple species. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 6. (8 February 2005), pp. 1974-1979. by Roded Sharan, Silpa Suthram, Ryan M. Kelley, et al.Tanja Kuhn, Scott McCuine, Peter Uetz, Taylor Sittler, Richard M. Karp, Trey Ideker posted by 21 people chica kiekyon thegoose2 robfsouza carlk C. elegans / WormBase tharris jiny sza dragonrez okarsligil balajis nuke2005 maryee gurkanbebek koller cjeans iris_2001 Bioinformatics maralena mdstobbe
	Global Mapping of the Yeast Genetic Interaction Network [My Copy] Science, Vol. 303, No. 5659. (6 February 2004), pp. 808-813. by Amy H. Tong, Guillaume Lesage, Gary D. Bader, et al.Huiming Ding, Hong Xu, Xiaofeng Xin, James Young, Gabriel F. Berriz, Renee L. Brost, Michael Chang, YiQun Chen, Xin Cheng, Gordon Chua, Helena Friesen, Debra S. Goldberg, Jennifer Haynes, Christine Humphries, Grace He, Shamiza Hussein, Lizhu Ke, Nevan Krogan, Zhijian Li, Joshua N. Levinson, Hong Lu, Patrice Menard, Christella Munyana, Ainslie B. Parsons, Owen Ryan, Raffi Tonikian, Tania Roberts, Anne-Marie Sdicu, Jesse Shapiro, Bilal Sheikh, Bernhard Suter, Sharyl L. Wong, Lan V. Zhang, Hongwei Zhu, Christopher G. Burd, Sean Munro, Chris Sander, Jasper Rine, Jack Greenblatt, Matthias Peter, Anthony Bretscher, Graham Bell, Frederick P. Roth, Grant W. Brown, Brenda Andrews, Howard Bussey, Charles Boone posted by 34 people icecrown kentz colmryan meanerelk rdowell TheresaNiederberger dakelley kinop nzm roys ajbattle czeller ldfu pcahan1 lfriedl lyongu luispedro opheliav tabu Chue nirfriedman nickluscombe koller raiyar patrycjam patrycja_missiuro kdl EBI-regulation jiny chasmand tresch Takayuki ksiek carlk
	Cytoscape: a software environment for integrated models of biomolecular interaction networks. [My Copy] Genome research, Vol. 13, No. 11. (November 2003), pp. 2498-2504. by Paul Shannon, Andrew Markiel, Owen Ozier, et al.Nitin S. Baliga, Jonathan T. Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker posted by 38 people JeremyZucker daveGerrard fastjoe23 badi stharward kentz tonamswish janani137 shung schwartzjmc APRegier panghouse robert85 capitall higueruelo shikin daforerog cswinburne thomaskelder nolodie giovenko Stew dragonrez balajis tvdbulck frohike carmaus dagmar natstreet jlh64 dIEMoSIRIS MoSi-Rostock compneur Evangelia pmendes yggdrasil carlk Borelli
	A Protein Interaction Map of Drosophila melanogaster [My Copy] Science, Vol. 302, No. 5651. (5 December 2003), pp. 1727-1736. by L. Giot, J. S. Bader, C. Brouwer, et al.A. Chaudhuri, B. Kuang, Y. Li, Y. L. Hao, C. E. Ooi, B. Godwin, E. Vitols, G. Vijayadamodar, P. Pochart, H. Machineni, M. Welsh, Y. Kong, B. Zerhusen, R. Malcolm, Z. Varrone, A. Collis, M. Minto, S. Burgess, L. McDaniel, E. Stimpson, F. Spriggs, J. Williams, K. Neurath, N. Ioime, M. Agee, E. Voss, K. Furtak, R. Renzulli, N. Aanensen, S. Carrolla, E. Bickelhaupt, Y. Lazovatsky, A. DaSilva, J. Zhong, C. A. Stanyon, R. L. Finley, K. P. White, M. Braverman, T. Jarvie, S. Gold, M. Leach, J. Knight, R. A. Shimkets, M. P. McKenna, J. Chant, J. M. Rothberg posted by 21 people rabio nitxin mgomes semin diamantis dragonrez shivaram lfriedl nuke2005 lyongu sesejun maryee xico memming eukfn kdl WetBiology csanford antonkratz carlk cerca
	A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules [My Copy] Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255. by Joshua M. Stuart, Eran Segal, Daphne Koller, Stuart K. Kim posted by 33 people icecrown sficklin roys thegoose2 cswinburne carlk saket pengchy nolodie jeremymiller C. elegans / WormBase tharris dragonrez textoris lfriedl balajis nuke2005 maryee tardigrade opheliav wnpx neveaire macle raylim lp2 karfunkel kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience vertikalist BTS-PT-AS-CS
	A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae) [My Copy] Proceedings of the National Academy of Sciences of the United States of America In Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 14. (8 July 2003), pp. 8348-8353. by Olga G. Troyanskaya, Kara Dolinski, Art B. Owen, Russ B. Altman, David Botstein posted by 25 people cjm phoenixzxl ruichu bertelsen bresiva BioGeek serak dragonrez okarsligil lfriedl balajis eckart_bindewald eweaver luispedro opheliav wnpx nedwards kdl Bioinformatics Evangelia kallberg isimpson carlk srp33 frohike
	Effect of sampling on topology predictions of protein-protein interaction networks. [My Copy] Nature biotechnology, Vol. 23, No. 7. (07 July 2005), pp. 839-844. by Jing-Dong D. Han, Denis Dupuy, Nicolas Bertin, Michael E. Cusick, Marc Vidal posted by 16 people wiedenhoeft csanford diamantis cerca snuppepuppan kuhn rabbat gurkanbebek koller eukfn mikaelhuss grahamc cjeans iris_2001 paolomarcatili carlk
	A map of the interactome network of the metazoan C. elegans. [My Copy] Science (New York, N.Y.), Vol. 303, No. 5657. (23 January 2004), pp. 540-543. by S. Li, C. M. Armstrong, N. Bertin, et al.H. Ge, S. Milstein, M. Boxem, P. O. Vidalain, J. D. Han, A. Chesneau, T. Hao, D. S. Goldberg, N. Li, M. Martinez, J. F. Rual, P. Lamesch, L. Xu, M. Tewari, S. L. Wong, L. V. Zhang, G. F. Berriz, L. Jacotot, P. Vaglio, J. Reboul, T. Hirozane-Kishikawa, Q. Li, H. W. Gabel, A. Elewa, B. Baumgartner, D. J. Rose, H. Yu, S. Bosak, R. Sequerra, A. Fraser, S. E. Mango, W. M. Saxton, S. Strome, S. Van Den Heuvel, F. Piano, J. Vandenhaute, C. Sardet, M. Gerstein, L. Doucette-Stamm, K. C. Gunsalus, J. W. Harper, M. E. Cusick, F. P. Roth, D. E. Hill, M. Vidal posted by 17 people mgomes Scis0000002 lawraga thegoose2 semin cerca C. elegans / WormBase tharris shivaram lfriedl nuke2005 lyongu sesejun Chue kdl carlk ksiek
	High-Quality Binary Protein Interaction Map of the Yeast Interactome Network [My Copy] Science, Vol. 322, No. 5898. (3 October 2008), pp. 104-110. by Haiyuan Yu, Pascal Braun, Muhammed A. Yildirim, et al.Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amelie Dricot, Alexei Vazquez, Ryan R. Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E. Hudson, Juyong Park, Xiaofeng Xin, Michael E. Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P. Roth, Albert-Laszlo Barabasi, Jan Tavernier, David E. Hill, Marc Vidal posted by 30 people icecrown aceol mgomes nzm pauldobson cabbagezs mariap3636 semin roys phoenixzxl kintoki jbhiatt elenaz jfr ocs cerca ptrobajo carlk zwang BenosLab gracio reyez mdperry dullhunk Petersarkies grahamc yeastyboy guhjy maralena neils
	Genomic analysis of regulatory network dynamics reveals large topological changes. [My Copy] Nature, Vol. 431, No. 7006. (16 September 2004), pp. 308-312. by N. M. Luscombe, M. M. Babu, H. Yu, M. Snyder, S. A. Teichmann, M. Gerstein posted by 33 people bioNetwork_sysBio joseph_x_zhou kentz behindtherabbit BTS-PT-AS-CS vertikalist camster snuppepuppan hununu icases lna lfriedl alexg nirfriedman dgront nickluscombe kairita comb kengg gespim koller timflutre fishtank cjeans rebeccamancy dbk-lab kdl EBI-regulation TNT ColDyn Plantandetc faion carlk
	Assessing the limits of genomic data integration for predicting protein networks [My Copy] Genome Research, Vol. 15, No. 7. (July 2005), pp. 945-953. by Long J. Lu, Yu Xia, Alberto Paccanaro, Haiyuan Yu, Mark Gerstein posted by 21 people ashishanand Paccanaro Lab paccanarolab jaimie aelef okarsligil lfriedl balajis maryee opheliav wnpx mbeautru eukfn grahamc nedwards kdl Bioinformatics brianb iris_2001 carlk phoenixzxl
	Global analysis of protein localization in budding yeast. [My Copy] Nature, Vol. 425, No. 6959. (16 October 2003), pp. 686-691. by Won-Ki K. Huh, James V. Falvo, Luke C. Gerke, et al.Adam S. Carroll, Russell W. Howson, Jonathan S. Weissman, Erin K. O'Shea posted by 19 people nzm Shibby MarcJungbluth thegoose2 mmcclean carlk C. elegans / WormBase tharris Cortel lfriedl opheliav rebeccahainess nirfriedman hplatero gurkanbebek koller raiyar iris_2001 kdl
	BioGRID: a general repository for interaction datasets. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by C. Stark, B. J. Breitkreutz, T. Reguly, L. Boucher, A. Breitkreutz, M. Tyers posted by 16 people tienholin TheresaNiederberger allysonlister csanford cerca guhjy balajis koller nm lpfernandes Evangelia chasmand carlk dragonrez tmmurali dylanwalker
	Modeling cellular machinery through biological network comparison. [My Copy] Nature biotechnology, Vol. 24, No. 4. (06 April 2006), pp. 427-433. by Roded Sharan, Trey Ideker posted by 24 people chica akshayk sergiun cswinburne kaarsinogen isimpson tmmurali kuhn tuck yas balajis wnpx ma_ko gurkanbebek koller gcalda grahamc massivemayhem karfunkel T_lab mingzhi vietanh0 cdeane carlk
	STRING: known and predicted protein-protein associations, integrated and transferred across organisms. [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005) by C. von Mering, L. J. Jensen, B. Snel, et al.S. D. Hooper, M. Krupp, M. Foglierini, N. Jouffre, M. A. Huynen, P. Bork posted by 10 people kuhn lfriedl nickluscombe koller iris_2001 kdl EBI-regulation Evangelia larsjuhljensen carlk
	Interrogating protein interaction networks through structural biology [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 9. (30 April 2002), pp. 5896-5901. by Patrick Aloy, Robert B. Russell posted by 19 people beete aceol kgutwin tomhebbron bpcusack ana barry baaden bicko lfriedl chad_davis henschel ruvido cjeans tale structural_bioinformatics kdl Bioinformatics Evangelia
	Functional topology in a network of protein interactions. [My Copy] Bioinformatics, Vol. 20, No. 3. (12 February 2004), pp. 340-348. by N. Przulj, D. A. Wigle, I. Jurisica posted by 10 people liaofeng cerca sergiun jiny dragonrez kuhn lfriedl kdl maralena carlk
	Superfamilies of Evolved and Designed Networks [My Copy] Science, Vol. 303, No. 5663. (5 March 2004), pp. 1538-1542. by Ron Milo, Shalev Itzkovitz, Nadav Kashtan, et al.Reuven Levitt, Shai Shen-Orr, Inbal Ayzenshtat, Michal Sheffer, Uri Alon posted by 37 people jaspervoskuilen nurban Katieleonard TimRooney kubyaddi Milgrams_Pilgrams Reg ocs babakap kaarsinogen heliopais galyardt ChaTo lfriedl alexg yish balicea ssb ddahlem cmm j3xucite donade bigbossman gurkanbebek shenorr ltabourier michaelmampaey kdl mathgamespatterns dtl vds-arg eni FAB-lab ADMiRes zibuyu tnhh karfunkel
	Probabilistic model of the human protein-protein interaction network [My Copy] Nature Biotechnology, Vol. 23, No. 8., pp. 951-959. by Daniel R. Rhodes, Scott A. Tomlins, Sooryanarayana Varambally, et al.Vasudeva Mahavisno, Terrence Barrette, Shanker Kalyana-Sundaram, Debashis Ghosh, Akhilesh Pandey, Arul M. Chinnaiyan posted by 21 people snow_dragon Borelli tonamswish ilyashl aelef cswinburne kentsis lfriedl balajis opheliav wnpx nickluscombe eukfn iris_2001 antonkratz kdl EBI-regulation mingzhi maralena phoenixzxl penpen926
	Discovering regulatory and signalling circuits in molecular interaction networks. [My Copy] Bioinformatics (Oxford, England), Vol. 18 Suppl 1, No. suppl_1. (1 July 2002), pp. S233-240. by Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel posted by 18 people myzhang tmmurali akshayk wilbur arne junehlee cswinburne isimpson yaredo dragonrez okarsligil lfriedl noano koller frohike kdl Bioinformatics carlk
	Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network [My Copy] Journal of Biology, Vol. 4, No. 2. (2005), 6. by Lan Zhang, Oliver King, Sharyl Wong, et al.Debra Goldberg, Amy Tong, Guillaume Lesage, Brenda Andrews, Howard Bussey, Charles Boone, Frederick Roth posted by 13 people colmryan lfriedl marcora jjray ssb benny nirfriedman koller iris_2001 gwcarter kdl carlk ksiek
	Topological structure analysis of the protein-protein interaction network in budding yeast [My Copy] Nucl. Acids Res., Vol. 31, No. 9. (1 May 2003), pp. 2443-2450. by Dongbo Bu, Yi Zhao, Lun Cai, et al.Hong Xue, Xiaopeng Zhu, Hongchao Lu, Jingfen Zhang, Shiwei Sun, Lunjiang Ling, Nan Zhang, Guojie Li, Runsheng Chen posted by 8 people jmenche lfriedl cjeans iris_2001 kdl carlk minostro ellakat
	Identification and analysis of evolutionarily cohesive functional modules in protein networks. [My Copy] Genome Res (31 January 2006) by Mónica Campillos, Christian von Mering, Lars Juhl J. Jensen, Peer Bork posted by 11 people Garamonfok lfriedl balajis nirfriedman nickluscombe koller dbgoodman kdl EBI-regulation larsjuhljensen carlk
	Unraveling Protein Networks with Power Graph Analysis [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108. by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder posted by 27 people colmryan carlk saket diamantis yyby jfr jiny aramesh2 AbnerCYH jmuhlich MatthiasReimann royerloic Ema lptolik kengg roys reyez tmmurali nuin Borelli askrajiv renatomilani stajich Mycology sebk OPIG rsantana
	Protein complexes and functional modules in molecular networks [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 21. (14 October 2003), pp. 12123-12128. by Victor Spirin, Leonid A. Mirny posted by 20 people lawraga ycho0610 diamantis jiny camster kentsis ujh tmmurali dragonrez karfunkel joseph_x_zhou dbk-lab Evangelia biophysics HIV_DR bioNetwork_sysBio grahamc biehl ellakat carlk
	Uncovering the overlapping community structure of complex networks in nature and society [My Copy] Nature, Vol. 435, No. 7043. (09 June 2005), pp. 814-818. by Gergely Palla, Imre Derenyi, Illes Farkas, Tamas Vicsek posted by 22 people carlk hendysh rst colmryan saket haewoon theshadowhost kuhn jfr lfriedl wilmegape gcalda ltabourier michaelmampaey Scis0000002 kdl ADMiRes maralena lmichan ellakat tmmurali betaparticle
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	Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction [My Copy] Current Opinion in Microbiology, Vol. 7, No. 5. (October 2004), pp. 535-545. by R. Jansen, M. Gerstein posted by 9 people flbarroso okarsligil lfriedl wnpx neils grahamc kdl Bioinformatics carlk
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	MPact: the MIPS protein interaction resource on yeast. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by U. Güldener, M. Münsterkötter, M. Oesterheld, et al.P. Pagel, A. Ruepp, H. W. Mewes, V. Stümpflen posted by 4 people icecrown chad_davis raiyar carlk
	A Probabilistic Functional Network of Yeast Genes [My Copy] Science, Vol. 306, No. 5701. (26 November 2004), pp. 1555-1558. by Insuk Lee, Shailesh V. Date, Alex T. Adai, Edward M. Marcotte posted by 24 people snow_dragon freesci isotelesis eesruiz aelef jiny irenas lfriedl ccots balajis nuke2005 eweaver opheliav nickluscombe reidy dbgrant kintoki dbk-lab kdl EBI-regulation balicea svdate ellakat roys
	Genome-Wide Prediction of C. elegans Genetic Interactions [My Copy] Science, Vol. 311, No. 5766. (10 March 2006), pp. 1481-1484. by Weiwei Zhong, Paul W. Sternberg posted by 16 people thegoose2 benjaminsb nedwards C. elegans / WormBase tharris lp2 lfriedl indigoviolet xwbcn nirfriedman patrycjam patrycja_missiuro kdl EisenLab mingzhi carlk
	A direct comparison of protein interaction confidence assignment schemes [My Copy] BMC Bioinformatics, Vol. 7 (26 July 2006), 360. by Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker posted by 9 people anf roys tmmurali lfriedl balajis gurkanbebek IbnBio iris_2001 kdl
	An assessment of the uses of homologous interactions [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 689-695. by Ramazan Saeed, Charlotte Deane posted by 12 people snow_dragon carlk lawraga winterschlaefer chad_davis grahamc cjeans laughcry mingzhi cdeane Pao-Yang samesense
	How complete are current yeast and human protein-interaction networks? [My Copy] Genome Biology, Vol. 7, No. 11. (01 December 2006), 120. by G. Traver Hart, Arun Ramani, Edward Marcotte posted by 9 people jperkins suteedee waqaralikeble eukfn shikin Pao-Yang GeneGo carlk phoenixzxl
	Modularity and community structure in networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 23. (6 June 2006), pp. 8577-8582. by M. E. J. Newman posted by 39 people Sergey_gerbek RayRa houniao007 gagliol spool jago thegoose tnhh daforerog pdlug senseable-urb tomhebbron dakelley rsantana complex networks orahcio vtraag dartar aqeel ChaTo jfr yas balicea ddahlem cmm fukken kubyaddi adriandefroment gcalda hannu T_lab FAB-lab ThinkTank marcio phreeza Diego_Prada carlk ellakat jjray
	Statistical analysis of domains in interacting protein pairs [My Copy] Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 993-1001. by M. W. Nye, Berzuini Carlo, R. Gilks, Babu M. Madan, A. Teichmann posted by 7 people lfriedl chad_davis wnpx neils iris_2001 kdl phoenixzxl
	Conserved pathways within bacteria and yeast as revealed by global protein network alignment [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 20. (30 September 2003), pp. 11394-11399. by Brian P. Kelley, Roded Sharan, Richard M. Karp, et al.Taylor Sittler, David E. Root, Brent R. Stockwell, Trey Ideker posted by 12 people chica emmackinnon okarsligil balajis nuke2005 gurkanbebek mirzazadeh denilw shu Bioinformatics mdstobbe carlk
	Modular organization of cellular networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 100, No. 3. (4 February 2003), pp. 1128-1133. by Alexander W. Rives, Timothy Galitski posted by 10 people lawraga ycho0610 diamantis jiny karfunkel Evangelia stefanoallesina ellakat carlk roys
	Filtering high-throughput protein-protein interaction data using a combination of genomic features. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by A. Patil, H. Nakamura posted by 5 people abhik lfriedl wnpx kdl carlk
	Hierarchical Organization of Modularity in Metabolic Networks [My Copy] Science, Vol. 297, No. 5586. (30 August 2002), pp. 1551-1555. by E. Ravasz, A. L. Somera, D. A. Mongru, Z. N. Oltvai, A. L. Barabasi posted by 33 people ganden feshbach cn_honjyo haewoon Scis0000002 schwartzjmc zufar deanmalmgren diamantis shivaram alexg yish wnpx ddahlem neveaire bigbossman griota jeremymiller natstreet karfunkel Biostatistics Computational-Genomics Bioinformatics mathgamespatterns Neuroscience dtl vds-arg eni GeschwindLab Evangelia stefanoallesina ellakat iris_2001
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	A combined algorithm for genome-wide prediction of protein function. [My Copy] Nature, Vol. 402, No. 6757. (4 November 1999), pp. 83-86. by E. M. Marcotte, M. Pellegrini, M. J. Thompson, T. O. Yeates, D. Eisenberg posted by 9 people jperkins dragonrez Robinder shivaram lfriedl ruvido cjeans kdl carlk
	Spontaneous evolution of modularity and network motifs [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 39. (27 September 2005), pp. 13773-13778. by Nadav Kashtan, Uri Alon posted by 30 people karthikraman roys Modularity in evolutionary algorithms rsantana vtraag anphony ocs saket mcphee marimo monod Borelli alexg i41m cmm Peterfine javierFellow rgb mattjb rebeccamancy cwr MathBio FAB-lab ComplexAdaptiveSystems pileWorks DSTO-CAS ColDyn phreeza stefanoallesina carlk
	Specificity and stability in topology of protein networks. [My Copy] Science (New York, N.Y.), Vol. 296, No. 5569. (3 May 2002), pp. 910-913. by Sergei Maslov, Kim Sneppen posted by 15 people nzm jmenche ocs tomhebbron phoenixzxl davidecellai muraken camster timflutre gcalda grahamc iris_2001 dbk-lab wjh122122 dylanwalker
	Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae. [My Copy] Nature genetics, Vol. 29, No. 4. (December 2001), pp. 482-486. by H. Ge, Z. Liu, G. M. Church, M. Vidal posted by 16 people frohike jeremymiller lptolik Robinder BioGeek lfriedl wnpx mmt gespim bluto ruvido grahamc kdl kintoki roys paolomarcatili
	The Structure and Function of Complex Networks [My Copy] SIAM Review, Vol. 45, No. 2. (2003), pp. 167-256. by M. E. J. Newman posted by 44 people danilov senseable-urb complex networks Sergey_gerbek Soslab halukbingol jsaramak tomhebbron jotwin LaurentHD vmarceau qqwert mrkn ocs brihea chibatching davidecellai diamantis panisson spool deanmalmgren pcarbo matteodellamico eyliu afragop merazzle muraken lshaw jaspervoskuilen timflutre gcalda gi0rgi0ne rcrane Complex_Real_Networks EntrepreneurialRisks shikin nolodie stefanoallesina eustatic skumagai ilkert rrbarb ebalp Borelli