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	RNA maps reveal new RNA classes and a possible function for pervasive transcription. [My Copy] Science (New York, N.Y.), Vol. 316, No. 5830. (8 June 2007), pp. 1484-1488. by Philipp Kapranov, Jill Cheng, Sujit Dike, et al.David A. Nix, Radharani Duttagupta, Aarron T. Willingham, Peter F. Stadler, Jana Hertel, Jörg Hackermüller, Ivo L. Hofacker, Ian Bell, Evelyn Cheung, Jorg Drenkow, Erica Dumais, Sandeep Patel, Gregg Helt, Madhavan Ganesh, Srinka Ghosh, Antonio Piccolboni, Victor Sementchenko, Hari Tammana, Thomas R. Gingeras posted by 20 people rsaito gdb maximilianh GustavoLacerda marcius alexg dpollard xico mtagaya rdiaz djkt stajich mathijsv asddd EisenLab WetBiology BioinfoCIPF SGU-CIPF elfar xingxu
	Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (27 March 2006) by Andrew V. Uzilov, Joshua M. Keegan, David H. Mathews posted by 8 people rb_india NicholasErho thomaskf marcius alexg eckart_bindewald BioinfoCIPF SGU-CIPF
	Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function [My Copy] Trends in Genetics, Vol. 22, No. 1. (January 2006), pp. 1-5. by Ken C. Pang, Martin C. Frith, John S. Mattick posted by 14 people rdowell eluinka cassj marcius alexg eckart_bindewald andersbj dchughes mtagaya microRNA G4ID BioinfoCIPF SGU-CIPF Genetics-of-Gambling
	Evolutionary plasticity of protein families: Coupling between sequence and structure variation [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. 3. (23 September 2005), pp. 535-544. by Anna R. Panchenko, Yuri I. Wolf, Larisa A. Panchenko, Thomas Madej posted by 8 people marcius alexg gbart sobolevnrm insectopalo BioinfoCIPF SGU-CIPF baker-group
	Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design. [My Copy] Nucleic Acids Res, Vol. 33, No. 18. (2005), pp. 5861-5867. by Gong Cheng, Bin Qian, Ram Samudrala, David Baker posted by 10 people bicko Einat marcius alexg nickolay sriram_s structural_bioinformatics BioinfoCIPF SGU-CIPF ladab
	The functional genomics of noncoding RNA. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5740. (2 September 2005), pp. 1527-1528. by John S. Mattick posted by 21 people GeeSharpMinor coela biozhang2001 lyongu marcius alexg eckart_bindewald dchughes mtagaya cmm neveaire bsmagic jayster4 Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab BioinfoCIPF bioinplant SGU-CIPF
	The protein structure prediction problem could be solved using the current PDB library. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 4. (25 January 2005), pp. 1029-1034. by Y. Zhang, J. Skolnick posted by 18 people Lombardo_7 semin xingwuliu mijam sschurer karbak iakes vavi marcius alexg j3xucite kracher schuylrp jfmuggs BioinfoCIPF Immunoinformatics SGU-CIPF neils
	Modeling the evolution of protein domain architectures using maximum parsimony. [My Copy] Journal of molecular biology, Vol. 366, No. 1. (9 February 2007), pp. 307-315. by Jessica H. Fong, Lewis Y. Geer, Anna R. Panchenko, Stephen H. Bryant posted by 13 people martainn calderonv wiedenhoeft jameswasmuth icases marcius tny choonpeng redelings zwang BioinfoCIPF SGU-CIPF TNT
	'Big science' protein project under fire [My Copy] Nature, Vol. 443, No. 7110. (2006), pp. 382-382. by David Cyranoski posted by 4 people marcius tny BioinfoCIPF SGU-CIPF
	From The Cover: Global mapping of the protein structure space and application in structure-based inference of protein function [My Copy] PNAS, Vol. 102, No. 10. (8 March 2005), pp. 3651-3656. by Jingtong Hou, Se-Ran Jun, Chao Zhang, Sung-Hou Kim posted by 4 people marcius tny BioinfoCIPF SGU-CIPF
	Mass spectrometry and the search for moonlighting proteins. [My Copy] Mass Spectrom Rev, Vol. 24, No. 6. (c 2005), pp. 772-782. by C. J. Jeffery posted by 4 people marcius tny BioinfoCIPF SGU-CIPF
	Partitioning Protein Structures into Domains: Why Is it so Difficult? [My Copy] Journal of Molecular Biology, Vol. 361, No. 3. (18 August 2006), pp. 562-590. by Timothy A. Holland, Stella Veretnik, Ilya N. Shindyalov, Philip E. Bourne posted by 5 people chad_davis marcius tny BioinfoCIPF SGU-CIPF
	Introns and the origin of nucleusâcytosol compartmentalization [My Copy] Nature, Vol. 440, No. 7080., pp. 41-45. by William Martin, Eugene V. Koonin posted by 10 people lyenh dayjm bala marcius tny penka Nie BioinfoCIPF SGU-CIPF DictyosteliumGroup
	Designed divergent evolution of enzyme function [My Copy] Nature, Vol. 440, No. 7087. (20 April 2006), pp. 1078-1082. by Yasuo Yoshikuni, Thomas E. Ferrin, Jay D. Keasling posted by 8 people pablocarb ygygod lingchong marcius tny dbikard BioinfoCIPF SGU-CIPF
	Design and Evolution of New Catalytic Activity with an Existing Protein Scaffold [My Copy] Science, Vol. 311, No. 5760. (27 January 2006), pp. 535-538. by Hee-Sung Park, Sung-Hun Nam, Jin K. Lee, et al.Chang N. Yoon, Bengt Mannervik, Stephen J. Benkovic, Hak-Sung Kim posted by 7 people baiaixi shuns dayjm marcius tny BioinfoCIPF SGU-CIPF
	The Impact of Structural Genomics: Expectations and Outcomes [My Copy] Science, Vol. 311, No. 5759. (20 January 2006), pp. 347-351. by John-Marc Chandonia, Steven E. Brenner posted by 12 people tjimenez bicko balajis marcius tny penka anwazo dgront insectopalo selrac BioinfoCIPF SGU-CIPF
	A quantitative protein interaction network for the ErbB receptors using protein microarrays [My Copy] Nature (06 November 2005) by Richard B. Jones, Andrew Gordus, Jordan A. Krall, Gavin Macbeath posted by 11 people okarsligil jfr marcius tny julius koller pjasper Bioinformatics SysbioMPI-TCells BioinfoCIPF SGU-CIPF
	Moonlighting proteins [My Copy] Trends in Biochemical Sciences, Vol. 24, No. 1. (1 January 1999), pp. 8-11. by Constance J. Jeffery posted by 7 people stevanspringer marcius tny FAB-lab BioinfoCIPF SGU-CIPF benlin
	The relationship between domain duplication and recombination. [My Copy] Journal of molecular biology, Vol. 346, No. 1. (11 February 2005), pp. 355-365. by Christine Vogel, Sarah A. Teichmann, Jose Pereira-Leal posted by 10 people ana marcius tny cjeans martainn mdimon structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	The Connectivity Map: Using Gene-Expression Signatures to Connect Small Molecules, Genes, and Disease [My Copy] Science, Vol. 313, No. 5795. (29 September 2006), pp. 1929-1935. by Justin Lamb, Emily D. Crawford, David Peck, et al.Joshua W. Modell, Irene C. Blat, Matthew J. Wrobel, Jim Lerner, Jean-Philippe Brunet, Aravind Subramanian, Kenneth N. Ross, Michael Reich, Haley Hieronymus, Guo Wei, Scott A. Armstrong, Stephen J. Haggarty, Paul A. Clemons, Ru Wei, Steven A. Carr, Eric S. Lander, Todd R. Golub posted by 39 people gbloeb zufar ipark-kaist bertelsen mingzhi AbnerCYH Dulcinea dansullivanblk BragilMassoud guhjy kuhn jfr yas balajis marcius lhonigberg neveaire kengg ealloza koller mlovell jdiggans ezra jeremymiller frohike massivemayhem lp2 pablomendes Biostatistics Computational-Genomics Bioinformatics Neuroscience T_lab BioinfoCIPF SGU-CIPF GeschwindLab Plantandetc jdiezperezj askrajiv
	SCOPPI: a structural classification of protein-protein interfaces. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006) by Christof Winter, Andreas Henschel, Wan Kyu K. Kim, Michael Schroeder posted by 15 people winterschlaefer higueruelo sjcockell ana kuhn bicko chad_davis marcius choonpeng structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF Evangelia kintoki
	Beyond annotation transfer by homology: novel protein-function prediction methods to assist drug discovery. [My Copy] Drug Discov Today, Vol. 10, No. 21. (1 November 2005), pp. 1475-1482. by Y. Ofran, M. Punta, R. Schneider, B. Rost posted by 6 people jwortman kuhn marcius cjeans BioinfoCIPF SGU-CIPF
	Text mining for metabolic pathways, signaling cascades, and protein networks. [My Copy] Sci STKE, Vol. 2005, No. 283. (10 May 2005) by R. Hoffmann, M. Krallinger, E. Andres, J. Tamames, C. Blaschke, A. Valencia posted by 13 people ImagCom - Biomedical Text Computing eesruiz irenas matzke kuhn textoris yas marcius fisherp dbk-lab T_lab BioinfoCIPF SGU-CIPF
	Chemical space and biology [My Copy] Nature, Vol. 432, No. 7019. (15 December 2004), pp. 824-828. by Christopher M. Dobson posted by 11 people pfluffernuugen jxl VGreiff bertelsen LamBras kuhn marcius caporaso biomedical-nlp BioinfoCIPF SGU-CIPF
	Exploring biology with small organic molecules [My Copy] Nature, Vol. 432, No. 7019. (16 December 2004), pp. 846-854. by Brent R. Stockwell posted by 4 people kuhn marcius BioinfoCIPF SGU-CIPF
	Navigating chemical space for biology and medicine [My Copy] Nature, Vol. 432, No. 7019. (15 December 2004), pp. 855-861. by Christopher Lipinski, Andrew Hopkins posted by 17 people TimRooney nicklynch sameersoi NaCTeM Effie LamBras BragilMassoud kuhn jxl marcius caporaso blackbart EC biomedical-nlp BioinfoCIPF SGU-CIPF jerome_ucsf_slb
	Structural comparison of metabolic networks in selected single cell organisms. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by D. Zhu, Z. S. Qin posted by 3 people Borelli alexg tny
	The evolution of connectivity in metabolic networks. [My Copy] PLoS Biol, Vol. 3, No. 7. (July 2005) by T. Pfeiffer, O. S. Soyer, S. Bonhoeffer posted by 12 people sergiun wangbo wilbur jameswasmuth westoll bjorns alexg balicea tny livingthingdan livingthing Ema
	Effective function annotation through catalytic residue conservation. [My Copy] Proc Natl Acad Sci U S A (21 July 2005) by Richard A A. George, Ruth V V. Spriggs, Gail J J. Bartlett, et al.Alex Gutteridge, Malcolm W W. Macarthur, Craig T T. Porter, Bissan Al-Lazikani, Janet M M. Thornton, Mark B B. Swindells posted by 7 people chrn Einat alexg gbart tny bilab structural_bioinformatics
	How Enzymes Work: Analysis by Modern Rate Theory and Computer Simulations [My Copy] Science, Vol. 303, No. 5655. (9 January 2004), pp. 186-195. by Mireia Garcia-Viloca, Jiali Gao, Martin Karplus, Donald G. Truhlar posted by 6 people mkrishna flbarroso BragilMassoud baaden alexg tny
	Metabolic pathways in the post-genome era. [My Copy] Trends Biochem Sci, Vol. 28, No. 5. (May 2003), pp. 250-258. by J. A. Papin, N. D. Price, S. J. Wiback, D. A. Fell, B. O. Palsson posted by 5 people schwartzjmc camster alexg tny dbk-lab
	The metabolic world of Escherichia coli is not small [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 6. (10 February 2004), pp. 1543-1547. by Masanori Arita posted by 15 people ptrobajo schwartzjmc camster PeterCollins riomenajang barry alexg tny azuma dylan77 dbk-lab structural_bioinformatics Bioinformatics Ema hryk
	Network Motifs: Simple Building Blocks of Complex Networks [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 824-827. by R. Milo, S. Shen-Orr, S. Itzkovitz, N. Kashtan, D. Chklovskii, U. Alon posted by 83 people antonkratz jaspervoskuilen complex networks Sergey_gerbek nurban balabu ocs mjoach makrehchi schwartzjmc poirel tomhebbron arsyed vtraag sergiun fierykylin Akimasa operon GEB dlobo daforerog chasmand wei_tang darian orahcio babakap brewbooks phoenixzxl Md_2007 mtagaya heliopais kaarsinogen galyardt cswinburne mullonc camster korakot aalibes ChaTo imouthesmp Borelli lfriedl alexg balicea tny ssb wnpx ddahlem cmm donade neveaire griota gurkanbebek jtaylor josepe iris_2001 michaelmampaey rebeccamancy karfunkel lenov Philosophy_of_Information dbk-lab Blog_and_Wiki_Research kdl FAB-lab ColDyn ADMiRes Evangelia roys tfogal zibuyu maralena stefanoallesina pbull cmor renatomilani shikin GeneGo carlk applesnow subhacom i-stevenson ethkim
	Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways. [My Copy] J Am Chem Soc, Vol. 125, No. 39. (1 October 2003), pp. 11853-11865. by M. Hattori, Y. Okuno, S. Goto, M. Kanehisa posted by 5 people BragilMassoud kuhn beapen alexg Evangelia
	Exploring the diversity of complex metabolic networks. [My Copy] Bioinformatics (4 January 2005) by Vassily Hatzimanikatis, Chunhui Li, Justin A A. Ionita, Christopher S S. Henry, Matthew D D. Jankowski, Linda J J. Broadbelt posted by 7 people pablocarb greg betainverse kuhn alexg jdiggans shung
	Network biology: understanding the cell's functional organization. [My Copy] Nature reviews. Genetics, Vol. 5, No. 2. (February 2004), pp. 101-113. by Albert-László L. Barabási, Zoltán N. Oltvai posted by 51 people schwartzjmc daforerog fastjoe23 arsyed thepogoman mtagaya camster snuppepuppan dbk greg guhjy LeightonP hununu felciano mague kuhn textoris rhem1224 lfriedl balajis alexg wnpx jknabe adepace nickluscombe bundschu awooga jdiggans jeremymiller uprock timflutre mikaelhuss gcalda grahamc fishtank jayster4 naegele streptomyces dbk-lab kdl EisenLab TCR_Signaling EBI-regulation SysbioMPI-TCells GeschwindLab generif_paper Evangelia heliopais shikin GeneGo hryk
	Error bars in experimental biology [My Copy] J. Cell Biol., Vol. 177, No. 1. (9 April 2007), pp. 7-11. by Geoff Cumming, Fiona Fidler, David L. Vaux posted by 62 people Jporci pjmaybank inbetweener tt srmblack abhishek_tiwari druvus bangyuzhou schoeband brianb cambray dbikard rec3141 ajaymalik Gorzomagnificent daforerog sen_cheng yangjustinc maximilianh qwermish bayesian ntakano flips inesdesantiago brian ana batallah manduca kuhn Borelli dayjm kristina chad_davis tny dullhunk rabu lechristophe nelmor jdelcampo fishtank emmahe lisa1 Daria_G devender bmaust cabbagezs natstreet winterschlaefer krokicki loopback007 structural_bioinformatics Bioinformatics VisionLab FlowCytometry Microbial-Ecology wilbur tdmckee renatomilani delenca arindrartow guhjy mjoach
	Evolution of enzyme superfamilies. [My Copy] Current opinion in chemical biology In Analytical techniques / Mechanisms, Vol. 10, No. 5. (October 2006), pp. 492-497. by Margaret E. Glasner, John A. Gerlt, Patricia C. Babbitt posted by 8 people NickFurnham yuslinaz kuhn tny robert caporaso ucbcjbm biomedical-nlp
	Enzyme promiscuity: evolutionary and mechanistic aspects [My Copy] Current Opinion in Chemical Biology In Analytical techniques / Mechanisms, Vol. 10, No. 5. (October 2006), pp. 498-508. by O. Khersonsky, C. Roodveldt, D. Tawfik posted by 9 people pablocarb nanonan pauldobson idoerg BragilMassoud kuhn tny ucbcjbm renatomilani
	MANET: tracing evolution of protein architecture in metabolic networks [My Copy] BMC Bioinformatics, Vol. 7 (19 July 2006), 351. by Hee S. Kim, Jay E. Mittenthal, Gustavo Caetano-Anolles posted by 3 people kuhn balajis tny
	Observing local and global properties of metabolic pathways: "load points" and "choke points" in the metabolic networks. [My Copy] Bioinformatics (8 May 2006) by Syed Asad A. Rahman, Dietmar Schomburg posted by 9 people jiny kuhn tny AbnerCYH bluto Nadam jdiggans Algorithms mdstobbe
	Leveraging enzyme structure-function relationships for functional inference and experimental design: the structure-function linkage database. [My Copy] Biochemistry, Vol. 45, No. 8. (28 February 2006), pp. 2545-2555. by Scott C-H C. Pegg, Shoshana D. Brown, Sunil Ojha, et al.Jennifer Seffernick, Elaine C. Meng, John H. Morris, Patricia J. Chang, Conrad C. Huang, Thomas E. Ferrin, Patricia C. Babbitt posted by 8 people NickFurnham grottenolm yzlab ucbcjbm kuhn tny jdiggans sim82
	Evolution of function in protein superfamilies, from a structural perspective [My Copy] Journal of Molecular Biology, Vol. 307, No. 4. (6 April 2001), pp. 1113-1143. by Annabel E. Todd, Christine A. Orengo, Janet M. Thornton posted by 13 people ucbcjbm flbarroso yuslinaz sgoetz ana kuhn tny sriram_s cdallett uz_labu_laimi structural_bioinformatics Bioinformatics sim82
	Functional Versatility and Molecular Diversity of the Metabolic Map of Escherichia coli [My Copy] Genome Research, Vol. 11, No. 9. (1 September 2001), pp. 1503-1510. by Sophia Tsoka, Christos A. Ouzounis posted by 3 people ucbcjbm kuhn tny
	The evolution and structural anatomy of the small molecule metabolic pathways in Escherichia coli. [My Copy] J Mol Biol, Vol. 311, No. 4. (24 August 2001), pp. 693-708. by S. A. Teichmann, S. C. Rison, J. M. Thornton, M. Riley, J. Gough, C. Chothia posted by 4 people tjimenez kuhn tny sim82
	Ligand selectivity and competition between enzymes in silico. [My Copy] Nat Biotechnol, Vol. 22, No. 8. (August 2004), pp. 1039-1045. by A. Macchiarulo, I. Nobeli, J. M. Thornton posted by 8 people pablocarb benlin ucbcjbm BragilMassoud kuhn bicko tny noby
	The 'evolvability' of promiscuous protein functions. [My Copy] Nature genetics, Vol. 37, No. 1. (28 January 2005), pp. 73-76. by Amir Aharoni, Leonid Gaidukov, Olga Khersonsky, Stephen McQ Gould, Cintia Roodveldt, Dan S. Tawfik posted by 5 people barmak7282 bpcusack jshapiro kuhn tny
	Towards a proteome-scale map of the human protein-protein interaction network [My Copy] Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1173-1178. by Jean-Francois Rual, Kavitha Venkatesan, Tong Hao, et al.Tomoko Hirozane-Kishikawa, Amelie Dricot, Ning Li, Gabriel F. Berriz, Francis D. Gibbons, Matija Dreze, Nono Ayivi-Guedehoussou, Niels Klitgord, Christophe Simon, Mike Boxem, Stuart Milstein, Jennifer Rosenberg, Debra S. Goldberg, Lan V. Zhang, Sharyl L. Wong, Giovanni Franklin, Siming Li, Joanna S. Albala, Janghoo Lim, Carlene Fraughton, Estelle Llamosas, Sebiha Cevik, Camille Bex, Philippe Lamesch, Robert S. Sikorski, Jean Vandenhaute, Huda Y. Zoghbi, Alex Smolyar, Stephanie Bosak, Reynaldo Sequerra, Lynn Doucette-Stamm, Michael E. Cusick, David E. Hill, Frederick P. Roth, Marc Vidal posted by 24 people yaredo Complex Networks fesousa aelef dragonrez kuhn okarsligil jfr lyongu maryee benny wnpx yoh noano gurkanbebek mbeautru eukfn grahamc lpfernandes antonkratz Bioinformatics Evangelia csanford ksiek
	Systems biology. Tracing life's circuitry. [My Copy] Science, Vol. 302, No. 5651. (5 December 2003), pp. 1646-1649. by E. Pennisi posted by 3 people Scis0000002 alexg wnpx
	Design principles of a bacterial signalling network [My Copy] Nature, Vol. 438, No. 7067., pp. 504-507. by Markus Kollmann, Linda Løvdok, Kilian Bartholomé, Jens Timmer, Victor Sourjik posted by 14 people rklancer abhik monod chrn jmeppley bayesian alexg ryang balicea wnpx balabu entropy comb jjray
	The KEGG resource for deciphering the genome [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_1. (1 January 2004), pp. D277-280. by Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Yasushi Okuno, Masahiro Hattori posted by 13 people ipark-kaist tfuji mqbphcw3 irenas BragilMassoud lfriedl nuke2005 alexg bioinfo wnpx Garamonfok kdl shung
	Hierarchical Organization of Modularity in Metabolic Networks [My Copy] Science, Vol. 297, No. 5586. (30 August 2002), pp. 1551-1555. by E. Ravasz, A. L. Somera, D. A. Mongru, Z. N. Oltvai, A. L. Barabasi posted by 33 people ganden feshbach cn_honjyo haewoon Scis0000002 schwartzjmc zufar deanmalmgren diamantis shivaram alexg yish wnpx ddahlem neveaire bigbossman griota jeremymiller natstreet karfunkel Biostatistics Computational-Genomics Bioinformatics mathgamespatterns Neuroscience dtl vds-arg eni GeschwindLab Evangelia stefanoallesina ellakat iris_2001
	Modeling cellular machinery through biological network comparison. [My Copy] Nature biotechnology, Vol. 24, No. 4. (06 April 2006), pp. 427-433. by Roded Sharan, Trey Ideker posted by 24 people chica akshayk sergiun cswinburne kaarsinogen isimpson tmmurali kuhn tuck yas balajis wnpx ma_ko gurkanbebek koller gcalda grahamc massivemayhem karfunkel T_lab mingzhi vietanh0 cdeane carlk
	Interactome: gateway into systems biology. [My Copy] Hum Mol Genet, Vol. 14 Spec No. 2 (15 October 2005) by M. E. Cusick, N. Klitgord, M. Vidal, D. E. Hill posted by 11 people kuhn maryee wnpx gandhih jdiggans braingrind grahamc dejori ic4 generif_paper wilbur
	Illuminating drug discovery with biological pathways. [My Copy] FEBS letters, Vol. 579, No. 8. (21 March 2005), pp. 1872-1877. by Gordana Apic, Tijana Ignjatovic, Scott Boyer, Robert B. Russell posted by 8 people richardbickerton ubcg08l kuhn Borelli chad_davis wnpx mikaelhuss renatomilani
	Systems modeling: a pathway to drug discovery. [My Copy] Curr Opin Chem Biol, Vol. 9, No. 4. (August 2005), pp. 400-406. by P. Rajasethupathy, S. J. Vayttaden, U. S. Bhalla posted by 5 people snuppepuppan kuhn wnpx mmt jdiggans
	Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 24. (15 December 2005), pp. 4401-4407. by L. Strömbäck, P. Lambrix posted by 9 people fgibson allysonlister agomez kuhn balajis wnpx dagmar dIEMoSIRIS compneur
	The Unified Medical Language System (UMLS): integrating biomedical terminology [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_1. (1 January 2004), pp. D267-270. by Olivier Bodenreider posted by 14 people balajis guhjy guelke irenas kuhn wnpx jandot bundschu josepe kkaiser leechuck sgoetz dbk-lab IEG
	Metabolomics and systems biology: making sense of the soup. [My Copy] Curr Opin Microbiol, Vol. 7, No. 3. (June 2004), pp. 296-307. by D. B. Kell posted by 15 people camster snuppepuppan dbk irenas BragilMassoud betainverse rmj001 ssaw kuhn wnpx daniel_schober jrbanga streptomyces dbk-lab JeremyZucker
	Automated de novo prediction of native-like RNA tertiary structures [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 37. (11 September 2007), pp. 14664-14669. by Rhiju Das, David Baker posted by 11 people fisherp rsaito jwm marcius eckart_bindewald zwang physics BioinfoCIPF SGU-CIPF Ema reyez
	Evolutionary rates vary among rRNA structural elements [My Copy] Nucl. Acids Res., Vol. 35, No. 10. (11 May 2007), pp. 3339-3354. by S. Smit, J. Widmann, R. Knight posted by 9 people mhamada marcius eckart_bindewald balicea penka i000 cjeans BioinfoCIPF SGU-CIPF
	RNA conformational classes. [My Copy] Nucleic Acids Res, Vol. 32, No. 5. (2004), pp. 1666-1677. by B. Schneider, Z. Morávek, H. M. Berman posted by 5 people svozil marcius emidio_capriotti BioinfoCIPF SGU-CIPF
	RNA structure: experimental analysis. [My Copy] Curr Opin Microbiol (24 May 2007) by Brice Felden posted by 7 people svozil marcius penka emidio_capriotti debatebob BioinfoCIPF SGU-CIPF
	RNA Sampler: A new sampling based algorithm for common RNA secondary structure prediction and structural alignment. [My Copy] Bioinformatics (30 May 2007) by Xing Xu, Yongmei Ji, Gary D D. Stormo posted by 6 people zanexu marcius cjeans Bioinformatics BioinfoCIPF SGU-CIPF
	The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods. [My Copy] Nucleic Acids Res (25 May 2007) by Sebastien Moretti, Fabrice Armougom, Iain M M. Wallace, Desmond G G. Higgins, Cornelius V V. Jongeneel, Cedric Notredame posted by 5 people marcius sebastien_vigneau BioinfoCIPF SGU-CIPF marti
	RNAbor: a web server for RNA structural neighbors. [My Copy] Nucleic Acids Res (25 May 2007) by Eva Freyhult, Vincent Moulton, Peter Clote posted by 5 people marcius sebastien_vigneau BioinfoCIPF SGU-CIPF evaf
	Deleterious SNP prediction: be mindful of your training data! [My Copy] Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 664-672. by Matthew A. Care, Chris J. Needham, Andrew J. Bulpitt, David R. Westhead posted by 7 people danatcaret marcius penka BioinfoCIPF SGU-CIPF Yumyai happy_manatee
	On the relationship between sequence and structure similarities in proteomics [My Copy] Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 717-723. by Krissinel, Evgeny posted by 5 people phoenixzxl marcius penka BioinfoCIPF SGU-CIPF
	Structural proteomics: from the molecule to the system [My Copy] Nature Structural & Molecular Biology, Vol. 14, No. 1., pp. 3-4. by Lucia Banci, Wolfgang Baumeister, Josefina Enfedaque, et al.Udo Heinemann, Gunter Schneider, Israel Silman, Joel L. Sussman posted by 4 people marcius BioinfoCIPF SGU-CIPF gerry
	Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 1. (1 January 2007), pp. 127-128. by Ivica Letunic, Peer Bork posted by 9 people pablocarb aramata guhjy marcius skhadar BioinfoCIPF SGU-CIPF hpaces gjuggler
	A combinatorial approach to create artificial homing endonucleases cleaving chosen sequences [My Copy] Nucleic Acids Research, Vol. 34, No. 22. (December 2006), pp. e149-e149. by Smith, Julianne, Grizot, et al. Sylvestre, Arnould, Sylvain, Duclert, Aymeric, Epinat, Jean-Charles, Chames, Patrick, Prieto, Jesus, Redondo, Pilar, Blanco, J. Francisco, Bravo, Jeronimo, Montoya, Guillermo, Paques, Frederic, Duchateau, Philippe posted by 3 people marcius BioinfoCIPF SGU-CIPF
	Sequence comparison by sequence harmony identifies subtype-specific functional sites. [My Copy] Nucleic acids research, Vol. 34, No. 22. (December 2006), pp. 6540-6548. by Walter Pirovano, K. Anton Feenstra, Jaap Heringa posted by 7 people mgomes jameswasmuth marcius sriram_s BioinfoCIPF SGU-CIPF marti
	The interaction networks of structured RNAs [My Copy] Nucleic Acids Research, Vol. 34, No. 22. (December 2006), pp. 6587-6604. by Lescoute, A., Westhof, E. posted by 10 people jec105 marcius jarasch debatebob ankur_iitg BioinfoCIPF SGU-CIPF jennifermbui reyez austin
	SCOR: a Structural Classification of RNA database. [My Copy] Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 392-394. by P. S. Klosterman, M. Tamura, S. R. Holbrook, S. E. Brenner posted by 5 people dgront marcius debatebob BioinfoCIPF SGU-CIPF
	RNAs everywhere: genome-wide annotation of structured RNAs. [My Copy] J Exp Zoolog B Mol Dev Evol (14 December 2006) by Rolf Backofen, Stephan H H. Bernhart, Christoph Flamm, et al.Claudia Fried, Guido Fritzsch, Jörg Hackermüller, Jana Hertel, Ivo L L. Hofacker, Kristin Missal, Axel Mosig, Sonja J J. Prohaska, Dominic Rose, Peter F F. Stadler, Andrea Tanzer, Stefan Washietl, Sebastian Will posted by 18 people NicholasErho jfr bala marcius eckart_bindewald tardigrade andersbj penka cdawson ilh raylim jayster4 microRNA BioinfoCIPF SGU-CIPF DictyosteliumGroup GIG maralena
	RNA structure: the long and the short of it. [My Copy] Curr Opin Struct Biol, Vol. 15, No. 3. (June 2005), pp. 302-308. by S. R. Holbrook posted by 6 people jec105 marcius eckart_bindewald debatebob BioinfoCIPF SGU-CIPF
	TimeTree: a public knowledge-base of divergence times among organisms [My Copy] Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2971-2972. by Hedges, S. Blair, Dudley, Joel, Kumar, Sudhir posted by 3 people marcius BioinfoCIPF SGU-CIPF
	Variability and memory of protein levels in human cells [My Copy] Nature (19 November 2006) by Alex Sigal, Ron Milo, Ariel Cohen, et al.Naama Geva-Zatorsky, Yael Klein, Yuvalal Liron, Nitzan Rosenfeld, Tamar Danon, Natalie Perzov, Uri Alon posted by 8 people icases jjray marcius margaritis cjeans BioinfoCIPF SGU-CIPF TNT
	An RNA folding algorithm including pseudoknots based on dynamic weighted matching. [My Copy] Comput Biol Chem, Vol. 30, No. 1. (February 2006), pp. 72-76. by H. Liu, D. Xu, J. Shao, Y. Wang posted by 4 people marcius eckart_bindewald BioinfoCIPF SGU-CIPF
	ProteinRNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2746-2752. by Morozova, N., Allers, J., Shamoo, Y. posted by 3 people marcius BioinfoCIPF SGU-CIPF
	Discovering disease-genes by topological features in human proteinprotein interaction network [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2800-2805. by Xu, Jianzhen, Li, Yongjin posted by 7 people saket diamantis marcius skhadar ealloza BioinfoCIPF SGU-CIPF
	A protein interaction network for pluripotency of embryonic stem cells [My Copy] Nature by Jianlong Wang, Sridhar Rao, Jianlin Chu, et al.Xiaohua Shen, Dana N. Levasseur, Thorold W. Theunissen, Stuart H. Orkin posted by 10 people tonamswish kentsis marcius wnpx yeastyboy Ao_Li2007 iris_2001 BioinfoCIPF SGU-CIPF tdmckee
	Synthetic biology--putting engineering into biology [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2790-2799. by Matthias Heinemann, Sven Panke posted by 13 people druvus tomhebbron Synthetic_Biology_Literature SynBioSys dbikard aalibes marcius jtaylor Freecat fishtank karfunkel BioinfoCIPF SGU-CIPF
	Spatial localization of ligand binding sites from electron current density surfaces calculated from NMR chemical shift perturbations. [My Copy] J Am Chem Soc, Vol. 124, No. 39. (2 October 2002), pp. 11758-11763. by M. A. McCoy, D. F. Wyss posted by 3 people marcius BioinfoCIPF SGU-CIPF
	Three-dimensional comparative modeling of RNA. [My Copy] Nucleic Acids Symp Ser, No. 36. (1997), pp. 69-71. by C. Zwieb, F. Müller posted by 3 people marcius BioinfoCIPF SGU-CIPF
	Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection [My Copy] Nucleic Acids Research, Vol. 34, No. 17. (October 2006), pp. e112-e112. by Chivian, Dylan, Baker, David posted by 4 people marcius j3xucite BioinfoCIPF SGU-CIPF
	RNA structures and folding: from conventional to new issues in structure predictions. [My Copy] Curr Opin Struct Biol, Vol. 7, No. 2. (April 1997), pp. 229-235. by P. Schuster, P. F. Stadler, A. Renner posted by 4 people marcius emidio_capriotti BioinfoCIPF SGU-CIPF
	Structural Modeling of Protein Interactions by Analogy: Application to PSD-95 [My Copy] PLoS Computational Biology, Vol. preprint, No. 2006. (1 October 2006) by Dmitry Korkin, Fred P. Davis, Frank Alber, et al.Tinh Luong, Min-Yi Shen, Vladan Lucic, Mary B. Kennedy, Andrej Sali posted by 3 people marcius BioinfoCIPF SGU-CIPF
	The many faces of protein-protein interactions: A compendium of interface geometry. [My Copy] PLoS computational biology, Vol. 2, No. 9. (29 September 2006), e124. by Wan Kyu K. Kim, Andreas Henschel, Christof Winter, Michael Schroeder posted by 13 people winterschlaefer zdai raik bicko chad_davis marcius choonpeng BioinfoCIPF SGU-CIPF Evangelia wilbur allmensch marck
	Localization of protein-binding sites within families of proteins. [My Copy] Protein Sci, Vol. 14, No. 9. (September 2005), pp. 2350-2360. by D. Korkin, F. P. Davis, A. Sali posted by 9 people barry tjimenez bicko marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF wilbur
	NMR spectroscopy of RNA. [My Copy] Chembiochem, Vol. 4, No. 10. (6 October 2003), pp. 936-962. by B. Fürtig, C. Richter, J. Wöhnert, H. Schwalbe posted by 4 people bmduggan marcius BioinfoCIPF SGU-CIPF
	Use of 19F NMR spectroscopy to screen chemical libraries for ligands that bind to proteins. [My Copy] Org Biomol Chem, Vol. 2, No. 5. (7 March 2004), pp. 725-731. by T. Tengel, T. Fex, H. Emtenas, F. Almqvist, I. Sethson, J. Kihlberg posted by 3 people marcius BioinfoCIPF SGU-CIPF
	A multi-model approach to nucleic acid-based drug development. [My Copy] BioDrugs, Vol. 18, No. 1. (2004), pp. 37-50. by I. Gautherot, R. Sodoyer posted by 3 people marcius BioinfoCIPF SGU-CIPF
	Studies of protein-ligand interactions by NMR. [My Copy] Biochem Soc Trans, Vol. 31, No. Pt 5. (October 2003), pp. 1006-1009. by J. Clarkson, I. D. Campbell posted by 3 people marcius BioinfoCIPF SGU-CIPF
	Protein-protein interaction analysis by nuclear magnetic resonance spectroscopy. [My Copy] Methods Mol Biol, Vol. 261 (2004), pp. 79-92. by G. Gao, J. G. Williams, S. L. Campbell posted by 3 people marcius BioinfoCIPF SGU-CIPF
	1H MR spectroscopy of the brain: absolute quantification of metabolites. [My Copy] Radiology, Vol. 240, No. 2. (August 2006), pp. 318-332. by J. F. Jansen, W. H. Backes, K. Nicolay, M. E. Kooi posted by 4 people YvesDeDeene marcius BioinfoCIPF SGU-CIPF
	Virtual drug discovery and development for neglected diseases through public-private partnerships. [My Copy] Nat Rev Drug Discov, Vol. 2, No. 11. (November 2003), pp. 919-928. by S. Nwaka, R. G. Ridley posted by 5 people cchand yaredo marcius BioinfoCIPF SGU-CIPF
	Antimalarial drug discovery: efficacy models for compound screening. [My Copy] Nat Rev Drug Discov, Vol. 3, No. 6. (June 2004), pp. 509-520. by D. A. Fidock, P. J. Rosenthal, S. L. Croft, R. Brun, S. Nwaka posted by 4 people cchand marcius BioinfoCIPF SGU-CIPF
	Protemot: prediction of protein binding sites with automatically extracted geometrical templates. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006) by D. T. Chang, Y. Z. Weng, J. H. Lin, M. J. Hwang, Y. J. Oyang posted by 3 people marcius BioinfoCIPF SGU-CIPF
	Structural bioinformatic approaches to the discovery of new antimycobacterial drugs. [My Copy] Curr Pharm Des, Vol. 10, No. 26. (2004), pp. 3195-3211. by K. Kantardjieff, B. Rupp posted by 3 people marcius BioinfoCIPF SGU-CIPF