Darya Vanichkina's Top Recommendations

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	Molecular biology: The long and short of RNAs. [My Copy] Nature, Vol. 457, No. 7232. (19 February 2009), pp. 974-975. by P. Carninci posted by 4 people guhjy rdowell mhamada mtagaya
	Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs. [My Copy] Nature, Vol. 457, No. 7232. (19 February 2009), pp. 1028-1032. by Affymetrix ENCODE Transcriptome Project, Cold Spring Harbor Laboratory ENCODE Transcriptome Project posted by 12 people guhjy gdb jfr daforerog fenghezi jochenG rdowell mtagaya djkt jbhiatt megraw mhamada
	Bidirectional promoters generate pervasive transcription in yeast [My Copy] Nature, Vol. 457, No. 7232. (25 January 2009), pp. 1033-1037. by Zhenyu Xu, Wu Wei, Julien Gagneur, et al.Fabiana Perocchi, Sandra Clauder-Munster, Jurgi Camblong, Elisa Guffanti, Francoise Stutz, Wolfgang Huber, Lars M. Steinmetz posted by 12 people oannes74 gwallau bartjacobse zufar rdowell jiezhou mtagaya djkt jbhiatt bpcusack operon lp2
	Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function [My Copy] Trends in Genetics, Vol. 22, No. 1. (January 2006), pp. 1-5. by Ken C. Pang, Martin C. Frith, John S. Mattick posted by 14 people rdowell eluinka cassj marcius alexg eckart_bindewald andersbj dchughes mtagaya microRNA G4ID BioinfoCIPF SGU-CIPF Genetics-of-Gambling
	BLAT--the BLAST-like alignment tool. [My Copy] Genome research, Vol. 12, No. 4. (1 April 2002), pp. 656-664. by W. James Kent posted by 41 people azazello rshe dchughes rdowell LabDros gwallau druvus aprasad maria_hauser n00c sficklin Thaverkamp cpwardell BergmanLab daveGerrard coela daforerog pwais umit mmartin paszkows operon miguel pcahan1 Ayest indigoviolet mtagaya treangen michC djkt timflutre olympos cjeans wenhan natstreet antonkratz EisenLab yoanjacquemin talponer bozdagd gpappas
	Naive Bayes for MicroRNA Target Predictions Machine Learning for MicroRNA Targets. [My Copy] Bioinformatics (8 October 2007) by Malik Yousef, Segun Jung, Andrew V V. Kossenkov, Louise C C. Showe, Michael K K. Showe posted by 8 people ashishanand alessandroparini mtagaya ealloza cabbagezs microRNA heliopais maralena
	The role of site accessibility in microRNA target recognition [My Copy] Nature Genetics, Vol. 39, No. 10. (23 September 2007), pp. 1278-1284. by Michael Kertesz, Nicola Iovino, Ulrich Unnerstall, Ulrike Gaul, Eran Segal posted by 19 people frohike daforerog alessandroparini jfr mtagaya rdiaz Hosna djkt Garamonfok physics bootsy epigenetics lp2 cabbagezs microRNA heliopais uwe yavanna maralena
	RNA interference: Hitting the on switch [My Copy] Nature, Vol. 448, No. 7156. (22 August 2007), pp. 855-858. by Erika Check posted by 3 people guhjy cabbagezs mtagaya
	Global and Local Architecture of the Mammalian microRNA–Transcription Factor Regulatory Network [My Copy] PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007), e131. by Reut Shalgi, Daniel Lieber, Moshe Oren, Yitzhak Pilpel posted by 20 people danaiancu tonamswish myzhang daforerog mtagaya jfr andersbj rdiaz sebastien_vigneau ealloza zwang bootsy cabbagezs rahulthadani Bioinformatics microRNA heliopais ale maralena kevinemamy
	Non-coding RNA [My Copy] Hum. Mol. Genet., Vol. 15 Spec No 1, No. suppl_1. (15 April 2006), pp. R17-29. by John S. Mattick, Igor V. Makunin posted by 24 people GeeSharpMinor danaiancu rb_india zanexu myrtilus tuck marcius eckart_bindewald tardigrade andersbj dchughes mtagaya scroft bsmagic cabbagezs Bioinformatics microRNA G4ID BioinfoCIPF bioinplant SGU-CIPF Genetics-of-Gambling bertelsen robertkofler
	Genome-wide non-mendelian inheritance of extra-genomic information in Arabidopsis [My Copy] Nature, Vol. aop, No. current. (23 March 2005) by Susan J. Lolle, Jennifer L. Victor, Jessica M. Young, Robert E. Pruitt posted by 10 people mfenner ryang mtagaya cmm bluto calamar cabbagezs krokicki FAB-lab bpcusack
	Genomic analysis of human microRNA transcripts [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 45. (6 November 2007), pp. 17719-17724. by Harpreet K. Saini, Sam Griffiths-Jones, Anton J. Enright posted by 20 people danaiancu tonamswish daforerog druvus microRNA heliopais jfr guhjy tmmurali dchughes AbnerCYH ealloza bootsy lp2 cabbagezs maximilianh RedmondSmyth gracio maralena tolot27
	Orc6 is required for dynamic recruitment of Cdt1 during repeated Mcm2–7 loading [My Copy] Genes & Development, Vol. 21, No. 22. (15 November 2007), pp. 2897-2907. by Shuyan Chen, Milan A. de Vries, Stephen P. Bell posted by 1 person rdowell
	Fast Statistical Alignment [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (29 May 2009), e1000392. by Robert K. Bradley, Adam Roberts, Michael Smoot, et al.Sudeep Juvekar, Jaeyoung Do, Colin Dewey, Ian Holmes, Lior Pachter posted by 20 people seb1 rdowell timflutre natstreet n00c yylin aprasad Gorzomagnificent guhjy dakelley reyez rec3141 farhat operon bmduggan nuin Journal picks AlexBateman djkt druvus
	Algorithmic systems biology [My Copy] Commun. ACM, Vol. 52, No. 5. (2009), pp. 80-88. by Corrado Priami posted by 2 people rdowell jvb
	GENEALOGY OF PRINCIPAL STRAINS OF THE YEAST GENETIC STOCK CENTER [My Copy] Genetics, Vol. 113, No. 1. (1 May 1986), pp. 35-43. by Robert K. Mortimer, John R. Johnston posted by 1 person rdowell
	The Language of Gene Interaction [My Copy] Genetics, Vol. 149, No. 3. (1 July 1998), pp. 1167-1171. by Patrick C. Phillips posted by 1 person rdowell
	Ploidy regulation of gene expression. [My Copy] Science (New York, N.Y.), Vol. 285, No. 5425. (9 July 1999), pp. 251-254. by T. Galitski, A. J. Saldanha, C. A. Styles, E. S. Lander, G. R. Fink posted by 4 people sbottani Annab rdowell behindtherabbit
	Acetylation of Foxo1 alters its DNA-binding ability and sensitivity to phosphorylation [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 32. (2005), pp. 11278-11283. by Hitomi Matsuzaki, Hiroaki Daitoku, Mitsutoki Hatta, Hisanori Aoyama, Kenji Yoshimochi, Akiyoshi Fukamizu posted by 1 person rdowell
	Acetylation of cAMP-responsive Element-binding Protein (CREB) by CREB-binding Protein Enhances CREB-dependent Transcription [My Copy] J. Biol. Chem., Vol. 278, No. 18. (25 April 2003), pp. 15727-15734. by Qing Lu, Amanda E. Hutchins, Colleen M. Doyle, James R. Lundblad, Roland P. Kwok posted by 1 person rdowell
	Acetylation Regulates Transcription Factor Activity at Multiple Levels [My Copy] Molecular Cell, Vol. 5, No. 4. (April 2000), pp. 745-751. by E. Soutoglou, N. Katrakili, I. Talianidis posted by 1 person rdowell
	Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications. [My Copy] Nucleic acids research, Vol. 37, No. 8. (1 May 2009), pp. 2461-2470. by H. Alexander Ebhardt, Herbert H. Tsang, Denny C. Dai, Yifeng Liu, Babak Bostan, Richard P. Fahlman posted by 8 people fishtank inesdesantiago gdb samgj Journal picks ppgardne rs rdowell
	Putting chromatin immunoprecipitation into context. [My Copy] Journal of cellular biochemistry, Vol. 107, No. 1. (1 May 2009), pp. 19-29. by Vincent Zecchini, Ian G. Mills posted by 3 people rdowell guhjy WanderingAengus
	A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome [My Copy] Genome Research, Vol. 19, No. 3. (4 March 2009), pp. 360-371. by Bryan J. Venters, B. Franklin Pugh posted by 8 people venancio TheresaNiederberger BergmanLab cisevol inesdesantiago idonaldson rdowell JustinCrocker
	Unexpected complexity of the budding yeast transcriptome [My Copy] IUBMB Life, Vol. 60, No. 12. (2008), pp. 775-781. by Takashi Ito, Fumihito Miura, Miyuki Onda posted by 1 person rdowell
	A Primer on Regression Methods for Decoding cis-Regulatory Logic [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (30 January 2009), e1000269. by Debopriya Das, Matteo Pellegrini, Joe W. Gray posted by 13 people Zephyrus orzenil daforerog TRHvidsten jfr rdiaz natstreet druvus Borelli rdowell dolchan xinhe2 WanderingAengus
	Silencing by imprinted noncoding RNAs: is transcription the answer? [My Copy] Trends in genetics : TIG, Vol. 23, No. 6. (June 2007), pp. 284-292. by F. M. Pauler, M. V. Koerner, D. P. Barlow posted by 3 people inesdesantiago rdowell coela
	A stress-responsive RNA switch regulates VEGFA expression [My Copy] Nature (21 December 2008) by Partho S. Ray, Jie Jia, Peng Yao, Mithu Majumder, Maria Hatzoglou, Paul L. Fox posted by 2 people rdowell mhamada
	Noncoding RNA in development [My Copy] Mammalian Genome, Vol. 19, No. 7. (1 August 2008), pp. 454-492. by Paulo Amaral, John Mattick posted by 5 people Mycology stajich inesdesantiago rdowell myrtilus
	The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing [My Copy] Science, Vol. 320, No. 5881. (6 June 2008), pp. 1344-1349. by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, et al.Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder posted by 26 people hzoltan bartjacobse GustavoLacerda debasis dbensasson cfvillalta rdowell poschm jmcq waszak michaelbarton djkt urgi stajich Mycology semrich caseybrown gjuggler Retchless biomcgary GeeSharpMinor mapplab faion bpcusack guhjy shurjo
	The Chemical Genomic Portrait of Yeast: Uncovering a Phenotype for All Genes [My Copy] Science, Vol. 320, No. 5874. (18 April 2008), pp. 362-365. by Maureen E. Hillenmeyer, Eula Fung, Jan Wildenhain, et al.Sarah E. Pierce, Shawn Hoon, William Lee, Michael Proctor, St, Mike Tyers, Daphne Koller, Russ B. Altman, Ronald W. Davis, Corey Nislow, Guri Giaever posted by 19 people daveGerrard bpcusack jdoconnell rdowell lawraga ajbattle sschurer ocs emptyhb tmmurali nfreed bala lp2 roys stajich Mycology chasmand guhjy raiyar
	Non-coding RNAs: Lost in translation? [My Copy] Gene, Vol. 386, No. 1-2. (15 January 2007), pp. 1-10. by Fabrício F. Costa posted by 8 people GeeSharpMinor rdowell thomaskf andersbj dchughes microRNA G4ID Genetics-of-Gambling
	Principles for the buffering of genetic variation. [My Copy] Science, Vol. 291, No. 5506. (9 February 2001), pp. 1001-1004. by J. L. Hartman, B. Garvik, L. Hartwell posted by 5 people dakelley rdowell ajbattle nirfriedman patrycja_missiuro
	A unique and universal molecular barcode array [My Copy] Nature Methods, Vol. 3, No. 8. (21 July 2006), pp. 601-603. by Sarah E. Pierce, Eula L. Fung, Daniel F. Jaramillo, et al.Angela M. Chu, Ronald W. Davis, Corey Nislow, Guri Giaever posted by 4 people rdowell maldi ccr raiyar
	A high-resolution map of transcription in the yeast genome [My Copy] PNAS, Vol. 103, No. 14. (4 April 2006), pp. 5320-5325. by Lior David, Wolfgang Huber, Marina Granovskaia, et al.Joern Toedling, Curtis J. Palm, Lee Bofkin, Ted Jones, Ronald W. Davis, Lars M. Steinmetz posted by 18 people oannes74 bartjacobse ThomasDOtto coela rdowell waszak tuck alexg eckart_bindewald dpollard entropy raiyar xingxu EisenLab steinmetzlab chasmand guhjy GeeSharpMinor
	RNA at the steering wheel [My Copy] Genome Biology, Vol. 7 (26 May 2006), 218. by Sabine Schmitt, Renato Paro posted by 1 person rdowell
	Global Mapping of the Yeast Genetic Interaction Network [My Copy] Science, Vol. 303, No. 5659. (6 February 2004), pp. 808-813. by Amy H. Tong, Guillaume Lesage, Gary D. Bader, et al.Huiming Ding, Hong Xu, Xiaofeng Xin, James Young, Gabriel F. Berriz, Renee L. Brost, Michael Chang, YiQun Chen, Xin Cheng, Gordon Chua, Helena Friesen, Debra S. Goldberg, Jennifer Haynes, Christine Humphries, Grace He, Shamiza Hussein, Lizhu Ke, Nevan Krogan, Zhijian Li, Joshua N. Levinson, Hong Lu, Patrice Menard, Christella Munyana, Ainslie B. Parsons, Owen Ryan, Raffi Tonikian, Tania Roberts, Anne-Marie Sdicu, Jesse Shapiro, Bilal Sheikh, Bernhard Suter, Sharyl L. Wong, Lan V. Zhang, Hongwei Zhu, Christopher G. Burd, Sean Munro, Chris Sander, Jasper Rine, Jack Greenblatt, Matthias Peter, Anthony Bretscher, Graham Bell, Frederick P. Roth, Grant W. Brown, Brenda Andrews, Howard Bussey, Charles Boone posted by 33 people kentz colmryan meanerelk rdowell TheresaNiederberger dakelley kinop nzm roys ajbattle czeller ldfu pcahan1 lfriedl lyongu luispedro opheliav tabu Chue nirfriedman nickluscombe koller raiyar patrycjam patrycja_missiuro kdl EBI-regulation jiny chasmand tresch Takayuki ksiek carlk
	Construction of a genetic toggle switch in Escherichia coli [My Copy] Nature, Vol. 403, No. 6767. (20 January 2000), pp. 339-342. by Timothy S. Gardner, Charles R. Cantor, James J. Collins posted by 13 people dbikard genocad sjayanthi marcio rdowell reidw Borelli ClaireFB lenov rklancer satsumakenji tvdbulck austin
	Is Code Still Moving Around? Looking Back at a Decade of Code Mobility [My Copy] In ICSE COMPANION '07: Companion to the proceedings of the 29th International Conference on Software Engineering (2007), pp. 9-20. by Antonio Carzaniga, Gian P. Picco, Giovanni Vigna posted by 1 person jsgalan
	Genetic algorithm optimization for pre-processing and variable selection of spectroscopic data [My Copy] Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 860-868. by Roger M. Jarvis, Royston Goodacre posted by 1 person jsgalan
	Increased TRPA1, TRPM8, and TRPV2 expression in dorsal root ganglia by nerve injury. [My Copy] Biochemical and biophysical research communications, Vol. 358, No. 4. (13 July 2007), pp. 1058-1064. by J. Frederick, M. E. Buck, D. J. Matson, D. N. Cortright posted by 1 person mtagaya
	The TRPV4 cation channel mediates stretch-evoked Ca2+ influx and ATP release in primary urothelial cell cultures. [My Copy] The Journal of biological chemistry, Vol. 284, No. 32. (7 August 2009), pp. 21257-21264. by Tsutomu Mochizuki, Takaaki Sokabe, Isao Araki, et al.Kayoko Fujishita, Koji Shibasaki, Kunitoshi Uchida, Keiji Naruse, Schuichi Koizumi, Masayuki Takeda, Makoto Tominaga posted by 1 person mtagaya
	Changes in human bladder epithelial cell gene expression associated with interstitial cystitis or antiproliferative factor treatment. [My Copy] Physiological genomics, Vol. 14, No. 2. (7 July 2003), pp. 107-115. by Susan Keay, Francoise Seillier-Moiseiwitsch, Chen-Ou O. Zhang, Toby C. Chai, Jialu Zhang posted by 1 person mtagaya
	Differentiation associated changes in gene expression profiles of interstitial cystitis and control urothelial cells. [My Copy] The Journal of urology, Vol. 180, No. 6. (December 2008), pp. 2681-2687. by Deborah R. Erickson, Steven R. Schwarze, Justin K. Dixon, Curtis J. Clark, Matt A. Hersh posted by 1 person mtagaya
	Endometrial-peritoneal interactions during endometriotic lesion establishment. [My Copy] The American journal of pathology, Vol. 173, No. 3. (September 2008), pp. 700-715. by M. Louise Hull, Claudia Rangel R. Escareno, Jane M. Godsland, et al.John R. Doig, Claire M. Johnson, Stephen C. Phillips, Stephen K. Smith, Simon Tavaré, Cristin G. Print, D. Stephen Charnock-Jones posted by 1 person mtagaya
	Differential expression of genes in eutopic and ectopic endometrium from patients with ovarian endometriosis. [My Copy] Fertility and sterility, Vol. 86, No. 3. (September 2006), pp. 548-553. by Sachiko Matsuzaki, Michel Canis, Jean-Luc L. Pouly, Revaz Botchorishvili, Pierre J. Déchelotte, Gérard Mage posted by 1 person mtagaya
	DNA microarray analysis of gene expression profiles in deep endometriosis using laser capture microdissection. [My Copy] Molecular human reproduction, Vol. 10, No. 10. (1 October 2004), pp. 719-728. by S. Matsuzaki, M. Canis, C. Vaurs-Barrière, et al.J. L. Pouly, O. Boespflug-Tanguy, F. Penault-Llorca, P. Dechelotte, B. Dastugue, K. Okamura, G. Mage posted by 1 person mtagaya
	Direct reprogramming of human neural stem cells by OCT4 [My Copy] Nature, Vol. 461, No. 7264. (28 August 2009), pp. 649-643. by Jeong B. Kim, Boris Greber, Marcos J. Arauzo-Bravo, et al.Johann Meyer, Kook I. Park, Holm Zaehres, Hans R. Scholer posted by 4 people leliavski djkt schoeband mtagaya
	Single-molecule sequencing of an individual human genome [My Copy] Nature Biotechnology, Vol. 27, No. 9. (10 August 2009), pp. 847-850. by Dmitry Pushkarev, Norma F. Neff, Stephen R. Quake posted by 29 people JamesBarger n00c ethanmj MurphysLab leliavski inesdesantiago fenghezi megraw kintoki neils daforerog gangcai mqbphcw3 jmanning2k jonilaserson druvus alexknight Journal picks qayub natstreet mtagaya Shared Literature Resource of the Microbial Fitness Group - MPI Bremen kinestetika guhjy installe psique SeaBird Bioinformatics danmaclean
	Discovery and development of anticancer aptamers. [My Copy] Molecular cancer therapeutics, Vol. 5, No. 12. (December 2006), pp. 2957-2962. by Christopher R. Ireson, Lloyd R. Kelland posted by 1 person mtagaya
	First-in-human experience of an antidote-controlled anticoagulant using RNA aptamer technology: a phase 1a pharmacodynamic evaluation of a drug-antidote pair for the controlled regulation of factor IXa activity. [My Copy] Circulation, Vol. 114, No. 23. (5 December 2006), pp. 2490-2497. by Christopher K. Dyke, Steven R. Steinhubl, Neal S. Kleiman, et al.Richard O. Cannon, Laura G. Aberle, Min Lin, Shelley K. Myles, Chiara Melloni, Robert A. Harrington, John H. Alexander, Richard C. Becker, Christopher P. Rusconi posted by 1 person mtagaya
	Phase 1b randomized study of antidote-controlled modulation of factor IXa activity in patients with stable coronary artery disease. [My Copy] Circulation, Vol. 117, No. 22. (3 June 2008), pp. 2865-2874. by Mark Y. Chan, Mauricio G. Cohen, Christopher K. Dyke, et al.Shelley K. Myles, Laura G. Aberle, Min Lin, James Walder, Steven R. Steinhubl, Ian C. Gilchrist, Neal S. Kleiman, David A. Vorchheimer, Nicholas Chronos, Chiara Melloni, John H. Alexander, Robert A. Harrington, Ross M. Tonkens, Richard C. Becker, Christopher P. Rusconi posted by 1 person mtagaya
	First-in-human evaluation of anti von Willebrand factor therapeutic aptamer ARC1779 in healthy volunteers. [My Copy] Circulation, Vol. 116, No. 23. (4 December 2007), pp. 2678-2686. by James C. Gilbert, Tia DeFeo-Fraulini, Renta M. Hutabarat, et al.Christopher J. Horvath, Patricia G. Merlino, H. Nicholas Marsh, Judith M. Healy, Sleiman Boufakhreddine, Thomas V. Holohan, Robert G. Schaub posted by 1 person mtagaya
	2'-Fluoropyrimidine RNA-based aptamers to the 165-amino acid form of vascular endothelial growth factor (VEGF165). Inhibition of receptor binding and VEGF-induced vascular permeability through interactions requiring the exon 7-encoded domain. [My Copy] The Journal of biological chemistry, Vol. 273, No. 32. (7 August 1998), pp. 20556-20567. by J. Ruckman, L. S. Green, J. Beeson, et al.S. Waugh, W. L. Gillette, D. D. Henninger, L. Claesson-Welsh, N. Janjić posted by 1 person mtagaya
	Molecular assembly of an aptamer-drug conjugate for targeted drug delivery to tumor cells. [My Copy] Chembiochem : a European journal of chemical biology, Vol. 10, No. 5. (23 March 2009), pp. 862-868. by Y. F. Huang, D. Shangguan, H. Liu, et al.J. A. Phillips, X. Zhang, Y. Chen, W. Tan posted by 1 person mtagaya
	Aptamer:toxin conjugates that specifically target prostate tumor cells. [My Copy] Cancer research, Vol. 66, No. 12. (15 June 2006), pp. 5989-5992. by T. C. Chu, J. W. Marks, L. A. Lavery, et al.S. Faulkner, M. G. Rosenblum, A. D. Ellington, M. Levy posted by 1 person mtagaya
	Eviprostat suppresses proinflammatory gene expression in the prostate of rats with partial bladder-outlet obstruction: A genome-wide DNA microarray analysis. [My Copy] Cytokine (16 July 2009) by Mitsuhiro Tagaya, Michiko Oka, Makoto Ueda, et al.Kazuchika Takagaki, Mitsushi Tanaka, Tadaaki Ohgi, Junichi Yano posted by 1 person mtagaya
	Aptamers and aptamer targeted delivery. [My Copy] RNA biology, Vol. 6, No. 3. (18 July 2009) by Amy C. Yan, Matthew Levy posted by 2 people guhjy mtagaya
	Novel dual inhibitory function aptamer-siRNA delivery system for HIV-1 therapy. [My Copy] Molecular therapy : the journal of the American Society of Gene Therapy, Vol. 16, No. 8. (August 2008), pp. 1481-1489. by J. Zhou, H. Li, S. Li, J. Zaia, J. J. Rossi posted by 1 person mtagaya
	Cell-specific aptamers for targeted therapies. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 535 (2009), pp. 59-78. by L. Cerchia, P. H. Giangrande, J. O. McNamara, V. de Franciscis posted by 1 person mtagaya
	A highly annotated whole-genome sequence of a Korean individual [My Copy] Nature, Vol. advance online publication, No. 7258. (08 July 2009), pp. 1011-1015. by Jong-Il Kim, Young S. Ju, Hansoo Park, et al.Sheehyun Kim, Seonwook Lee, Jae-Hyuk Yi, Joann Mudge, Neil A. Miller, Dongwan Hong, Callum J. Bell, Hye-Sun Kim, In-Soon Chung, Woo-Chung Lee, Ji-Sun Lee, Seung-Hyun Seo, Ji-Young Yun, Hyun N. Woo, Heewook Lee, Dongwhan Suh, Seungbok Lee, Hyun-Jin Kim, Maryam Yavartanoo, Minhye Kwak, Ying Zheng, Mi K. Lee, Hyunjun Park, Jeong Y. Kim, Omer Gokcumen, Ryan E. Mills, Alexander W. Zaranek, Joseph Thakuria, Xiaodi Wu, Ryan W. Kim, Jim J. Huntley, Shujun Luo, Gary P. Schroth, Thomas D. Wu, HyeRan Kim, Kap-Seok Yang, Woong-Yang Park, Hyungtae Kim, George M. Church, Charles Lee, Stephen F. Kingsmore, Jeong-Sun Seo posted by 10 people n00c fenghezi nicolesoranzo mtagaya reyez Journal picks pkonings psique djkt jbhiatt
	Suppression of bladder oxidative stress and inflammation by a phytotherapeutic agent in a rat model of partial bladder outlet obstruction. [My Copy] The Journal of urology, Vol. 182, No. 1. (July 2009), pp. 382-390. by M. Oka, T. Fukui, M. Ueda, M. Tagaya, T. Oyama, M. Tanaka posted by 1 person mtagaya
	The molecular basis of urgency: regional difference of vanilloid receptor expression in the human urinary bladder. [My Copy] Neurourology and urodynamics, Vol. 26, No. 3. (2007) by L. Liu, K. J. Mansfield, I. Kristiana, K. J. Vaux, R. J. Millard, E. Burcher posted by 1 person mtagaya
	Prognostic significance of the null genotype of glutathione S-transferase-T1 in patients with acute myeloid leukemia: increased early death after chemotherapy. [My Copy] Leukemia : official journal of the Leukemia Society of America, Leukemia Research Fund, U.K, Vol. 16, No. 2. (February 2002), pp. 203-208. by T. Naoe, Y. Tagawa, H. Kiyoi, et al.Y. Kodera, S. Miyawaki, N. Asou, K. Kuriyama, S. Kusumoto, C. Shimazaki, K. Saito, H. Akiyama, T. Motoji, M. Nishimura, K. Shinagawa, R. Ueda, H. Saito, R. Ohno posted by 1 person mtagaya
	Recombinant gene products of two natural variants of the human cytidine deaminase gene confer different deamination rates of cytarabine in vitro. [My Copy] Experimental hematology, Vol. 26, No. 5. (May 1998), pp. 421-425. by H. C. Kirch, J. Schröder, H. Hoppe, H. Esche, S. Seeber, J. Schütte posted by 1 person mtagaya
	Twenty novel genetic variations and haplotype structures of the DCK gene encoding human deoxycytidine kinase (dCK). [My Copy] Drug metabolism and pharmacokinetics, Vol. 23, No. 5. (2008), pp. 379-384. by S. R. Kim, Y. Saito, K. Maekawa, et al.E. Sugiyama, N. Kaniwa, H. Ueno, T. Okusaka, M. Ikeda, C. Morizane, N. Yamamoto, T. Yoshida, N. Kamatani, J. Furuse, H. Ishii, N. Saijo, S. Ozawa, J. Sawada posted by 1 person mtagaya
	Predictions of RNA secondary structure by combining homologous sequence information [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i330-338. by Michiaki Hamada, Kengo Sato, Hisanori Kiryu, Toutai Mituyama, Kiyoshi Asai posted by 3 people mtagaya Journal picks AlexBateman
	Characterization of IkappaBalpha nuclear import pathway. [My Copy] The Journal of biological chemistry, Vol. 274, No. 10. (5 March 1999), pp. 6804-6812. by P. Turpin, R. T. Hay, C. Dargemont posted by 2 people Plac3k mtagaya
	Mechanisms by which IkappaB proteins control NF-kappaB activity. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 1. (5 January 1999), pp. 49-54. by S. Simeonidis, D. Stauber, G. Chen, W. A. Hendrickson, D. Thanos posted by 1 person mtagaya
	A comparison of siRNA efficacy predictors. [My Copy] Biochemical and biophysical research communications, Vol. 321, No. 1. (13 August 2004), pp. 247-253. by P. Saetrom, O. Snøve posted by 1 person mtagaya
	Design of phosphorodiamidate morpholino oligomers (PMOs) for the induction of exon skipping of the human DMD gene. [My Copy] Molecular therapy : the journal of the American Society of Gene Therapy, Vol. 17, No. 3. (March 2009), pp. 554-561. by L. J. Popplewell, C. Trollet, G. Dickson, I. R. Graham posted by 1 person mtagaya
	Gene expression profile of bladder tissue of patients with ulcerative interstitial cystitis. [My Copy] BMC genomics, Vol. 10 (28 April 2009), 199. by Marianne Gamper, Volker Viereck, Verena Geissbühler, et al.Jakob Eberhard, Jochen Binder, Carlo Moll, Hubert Rehrauer, René Moser posted by 1 person mtagaya
	Hydrogen peroxide activates NF-kappa B through tyrosine phosphorylation of I kappa B alpha and serine phosphorylation of p65: evidence for the involvement of I kappa B alpha kinase and Syk protein-tyrosine kinase. [My Copy] The Journal of biological chemistry, Vol. 278, No. 26. (27 June 2003), pp. 24233-24241. by Y. Takada, A. Mukhopadhyay, G. C. Kundu, G. H. Mahabeleshwar, S. Singh, B. B. Aggarwal posted by 1 person mtagaya
	Oxidative stress induces NF-kappaB nuclear translocation without degradation of IkappaBalpha. [My Copy] Circulation, Vol. 100, No. 19 Suppl. (9 November 1999) by T. G. Canty, E. M. Boyle, A. Farr, E. N. Morgan, E. D. Verrier, T. H. Pohlman posted by 1 person mtagaya
	Separation of oxidant-initiated and redox-regulated steps in the NF-kappa B signal transduction pathway. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 91, No. 24. (22 November 1994), pp. 11527-11531. by M. T. Anderson, F. J. Staal, C. Gitler, L. A. Herzenberg, L. A. Herzenberg posted by 1 person mtagaya
	Oxidative stress interference with the nuclear factor-kappa B activation pathways. [My Copy] Biochemical pharmacology, Vol. 60, No. 8. (15 October 2000), pp. 1075-1083. by S. Schoonbroodt, J. Piette posted by 1 person mtagaya
	Functional analysis of 114 exon-internal AONs for targeted DMD exon skipping: indication for steric hindrance of SR protein binding sites. [My Copy] Oligonucleotides, Vol. 15, No. 4. (December 2005), pp. 284-297. by A. Aartsma-Rus, C. L. De Winter, A. A. Janson, et al.W. E. Kaman, G. J. Van Ommen, J. T. Den Dunnen, J. C. Van Deutekom posted by 1 person mtagaya
	The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. [My Copy] Nature genetics, Vol. 41, No. 5. (19 May 2009), pp. 553-562. by FANTOM Consortium, Harukazu Suzuki, Alistair R. Forrest, et al.Erik van Nimwegen, Carsten O. Daub, Piotr J. Balwierz, Katharine M. Irvine, Timo Lassmann, Timothy Ravasi, Yuki Hasegawa, Michiel J. de Hoon, Shintaro Katayama, Kate Schroder, Piero Carninci, Yasuhiro Tomaru, Mutsumi Kanamori-Katayama, Atsutaka Kubosaki, Altuna Akalin, Yoshinari Ando, Erik Arner, Maki Asada, Hiroshi Asahara, Timothy Bailey, Vladimir B. Bajic, Denis Bauer, Anthony G. Beckhouse, Nicolas Bertin, Johan Björkegren, Frank Brombacher, Erika Bulger, Alistair M. Chalk, Joe Chiba, Nicole Cloonan, Adam Dawe, Josee Dostie, Pär G. Engström, Magbubah Essack, Geoffrey J. Faulkner, J. Lynn Fink, David Fredman, Ko Fujimori, Masaaki Furuno, Takashi Gojobori, Julian Gough, Sean M. Grimmond, Mika Gustafsson, Megumi Hashimoto, Takehiro Hashimoto, Mariko Hatakeyama, Susanne Heinzel, Winston Hide, Oliver Hofmann, Michael Hörnquist, Lukasz Huminiecki, Kazuho Ikeo, Naoko Imamoto, Satoshi Inoue, Yusuke Inoue, Ryoko Ishihara, Takao Iwayanagi, Anders Jacobsen, Mandeep Kaur, Hideya Kawaji, Markus C. Kerr, Ryuichiro Kimura, Syuhei Kimura, Yasumasa Kimura, Hiroaki Kitano, Hisashi Koga, Toshio Kojima, Shinji Kondo, Takeshi Konno, Anders Krogh, Adele Kruger, Ajit Kumar, Boris Lenhard, Andreas Lennartsson, Morten Lindow, Marina Lizio, Cameron Macpherson, Norihiro Maeda, Christopher A. Maher, Monique Maqungo, Jessica Mar, Nicholas A. Matigian, Hideo Matsuda, John S. Mattick, Stuart Meier, Sei Miyamoto, Etsuko Miyamoto-Sato, Kazuhiko Nakabayashi, Yutaka Nakachi, Mika Nakano, Sanne Nygaard, Toshitsugu Okayama, Yasushi Okazaki, Haruka Okuda-Yabukami, Valerio Orlando, Jun Otomo, Mikhail Pachkov, Nikolai Petrovsky, Charles Plessy, John Quackenbush, Aleksandar Radovanovic, Michael Rehli, Rintaro Saito, Albin Sandelin, Sebastian Schmeier, Christian Schönbach, Ariel S. Schwartz, Colin A. Semple, Miho Sera, Jessica Severin, Katsuhiko Shirahige, Cas Simons, George St Laurent, Masanori Suzuki, Takahiro Suzuki, Matthew J. Sweet, Ryan J. Taft, Shizu Takeda, Yoichi Takenaka, Kai Tan, Martin S. Taylor, Rohan D. Teasdale, Jesper Tegnér, Sarah Teichmann, Eivind Valen, Claes Wahlestedt, Kazunori Waki, Andrew Waterhouse, Christine A. Wells, Ole Winther, Linda Wu, Kazumi Yamaguchi, Hiroshi Yanagawa, Jun Yasuda, Mihaela Zavolan, David A. Hume, Riken Omics Science Center, Takahiro Arakawa, Shiro Fukuda, Kengo Imamura, Chikatoshi Kai, Ai Kaiho, Tsugumi Kawashima, Chika Kawazu, Yayoi Kitazume, Miki Kojima, Hisashi Miura, Kayoko Murakami, Mitsuyoshi Murata, Noriko Ninomiya, Hiromi Nishiyori, Shohei Noma, Chihiro Ogawa, Takuma Sano, Christophe Simon, Michihira Tagami, Yukari Takahashi, Jun Kawai, Yoshihide Hayashizaki posted by 16 people schwartzjmc rdiaz rsaito guhjy hagechouchin443 gdb tonamswish burak YukaH coela mtagaya bertelsen xingxu TRHvidsten renatomilani antonkratz
	Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. [My Copy] Genes & development, Vol. 12, No. 13. (1 July 1998), pp. 1998-2012. by H. X. Liu, M. Zhang, A. R. Krainer posted by 1 person mtagaya
	Exonic Splicing Enhancer Motif Recognized by Human SC35 under Splicing Conditions [My Copy] Mol. Cell. Biol., Vol. 20, No. 3. (1 February 2000), pp. 1063-1071. by Hong-Xiang Liu, Shern L. Chew, Luca Cartegni, Michael Q. Zhang, Adrian R. Krainer posted by 1 person mtagaya
	Listening to silence and understanding nonsense: exonic mutations that affect splicing. [My Copy] Nature reviews. Genetics, Vol. 3, No. 4. (April 2002), pp. 285-298. by L. Cartegni, S. L. Chew, A. R. Krainer posted by 1 person mtagaya
	ESEfinder: a web resource to identify exonic splicing enhancers [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3568-3571. by Luca Cartegni, Jinhua Wang, Zhengwei Zhu, Michael Q. Zhang, Adrian R. Krainer posted by 1 person mtagaya
	Exonic splicing enhancers: mechanism of action, diversity and role in human genetic diseases. [My Copy] Trends in biochemical sciences, Vol. 25, No. 3. (March 2000), pp. 106-110. by B. J. Blencowe posted by 1 person mtagaya
	Dynamics of co-transcriptional pre-mRNA folding influences the induction of dystrophin exon skipping by antisense oligonucleotides. [My Copy] PLoS ONE, Vol. 3, No. 3. (2008) by K. B. Wee, Z. A. Pramono, J. L. Wang, K. F. MacDorman, P. S. Lai, W. C. Yee posted by 1 person mtagaya
	A nuclear export signal in the N-terminal regulatory domain of IkappaBalpha controls cytoplasmic localization of inactive NF-kappaB/IkappaBalpha complexes. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 3. (1 February 2000), pp. 1014-1019. by T. T. Huang, N. Kudo, M. Yoshida, S. Miyamoto posted by 1 person mtagaya
	Stimulated nuclear translocation of NF-kappaB and shuttling differentially depend on dynein and the dynactin complex. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 8. (24 February 2009), pp. 2647-2652. by C. K. Shrum, D. Defrancisco, M. K. Meffert posted by 1 person mtagaya
	Persistently increased voiding frequency despite relief of bladder outlet obstruction. [My Copy] The Journal of urology, Vol. 161, No. 5. (May 1999), pp. 1689-1693. by T. C. Chai, H. Gemalmaz, K. E. Andersson, J. B. Tuttle, W. D. Steers posted by 1 person mtagaya
	mRNA-Seq whole-transcriptome analysis of a single cell [My Copy] Nature Methods, Vol. 6, No. 5. (06 April 2009), pp. 377-382. by Fuchou Tang, Catalin Barbacioru, Yangzhou Wang, et al.Ellen Nordman, Clarence Lee, Nanlan Xu, Xiaohui Wang, John Bodeau, Brian B. Tuch, Asim Siddiqui, Kaiqin Lao, M. Azim Surani posted by 17 people hzoltan jfr inesdesantiago heliopais manduca debasis Vincent_Rouilly mtagaya woodson8 gdb guhjy kintoki fenghezi absterga jbhiatt pengchy sleepingcell
	Human Splicing Finder: an online bioinformatics tool to predict splicing signals. [My Copy] Nucleic acids research (1 April 2009) by François-Olivier O. Desmet, Dalil Hamroun, Marine Lalande, Gwenaëlle Collod-Béroud, Mireille Claustres, Christophe Béroud posted by 1 person mtagaya
	An expression meta-analysis of predicted microRNA targets identifies a diagnostic signature for lung cancer. [My Copy] BMC medical genomics, Vol. 1 (2008) by Y. Liang posted by 3 people mtagaya microRNA jfr
	TopHat: discovering splice junctions with RNA-Seq. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 9. (1 May 2009), pp. 1105-1111. by Cole Trapnell, Lior Pachter, Steven L. Salzberg posted by 28 people juokcho cthachuk hzoltan jwfoley heliopais dakelley druvus GustavoLacerda stubrown BergmanLab polivares torfinnnome jmcq mtagaya jonilaserson gdb guhjy ThomasDOtto n00c SIMR bioinformatics ghattem xingxu djkt vplagnol bertelsen natstreet idoerg vmsr
	Tuning up inflammation: how DNA sequence and chromatin organization control the induction of inflammatory genes by NF-kappaB. [My Copy] FEBS letters, Vol. 580, No. 12. (22 May 2006), pp. 2843-2849. by G. Natoli posted by 1 person mtagaya
	Etodolac, a selective cyclooxygenase-2 inhibitor, inhibits liver metastasis of colorectal cancer cells via the suppression of MMP-9 activity. [My Copy] International journal of molecular medicine, Vol. 17, No. 2. (February 2006), pp. 357-362. by T. Ishizaki, K. Katsumata, A. Tsuchida, et al.T. Wada, Y. Mori, M. Hisada, H. Kawakita, T. Aoki posted by 1 person mtagaya
	Viral infection and Toll-like receptor agonists induce a differential expression of type I and lambda interferons in human plasmacytoid and monocyte-derived dendritic cells. [My Copy] European journal of immunology, Vol. 34, No. 3. (March 2004), pp. 796-805. by E. M. Coccia, M. Severa, E. Giacomini, et al.D. Monneron, M. E. Remoli, I. Julkunen, M. Cella, R. Lande, G. Uzé posted by 1 person mtagaya
	Tumor necrosis factor alpha enhances influenza A virus-induced expression of antiviral cytokines by activating RIG-I gene expression. [My Copy] Journal of virology, Vol. 80, No. 7. (April 2006), pp. 3515-3522. by S. Matikainen, J. Sirén, J. Tissari, et al.V. Veckman, J. Pirhonen, M. Severa, Q. Sun, R. Lin, S. Meri, G. Uzé, J. Hiscott, I. Julkunen posted by 1 person mtagaya
	Identification of genes differentially regulated by interferon alpha, beta, or gamma using oligonucleotide arrays. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 26. (22 December 1998), pp. 15623-15628. by S. D. Der, A. Zhou, B. R. Williams, R. H. Silverman posted by 1 person mtagaya
	Lambda interferon (IFN-lambda), a type III IFN, is induced by viruses and IFNs and displays potent antiviral activity against select virus infections in vivo. [My Copy] Journal of virology, Vol. 80, No. 9. (May 2006), pp. 4501-4509. by N. Ank, H. West, C. Bartholdy, K. Eriksson, A. R. Thomsen, S. R. Paludan posted by 1 person mtagaya
	IFN-lambdas mediate antiviral protection through a distinct class II cytokine receptor complex. [My Copy] Nature immunology, Vol. 4, No. 1. (January 2003), pp. 69-77. by S. V. Kotenko, G. Gallagher, V. V. Baurin, et al.A. Lewis-Antes, M. Shen, N. K. Shah, J. A. Langer, F. Sheikh, H. Dickensheets, R. P. Donnelly posted by 1 person mtagaya
	Viral infections activate types I and III interferon genes through a common mechanism. [My Copy] The Journal of biological chemistry, Vol. 282, No. 10. (9 March 2007), pp. 7576-7581. by K. Onoguchi, M. Yoneyama, A. Takemura, et al.S. Akira, T. Taniguchi, H. Namiki, T. Fujita posted by 1 person mtagaya
	Activation of 2'-5' oligoadenylate synthetase by single-stranded and double-stranded RNA aptamers. [My Copy] The Journal of biological chemistry, Vol. 273, No. 6. (6 February 1998), pp. 3236-3246. by R. Hartmann, P. L. Norby, P. M. Martensen, et al.P. Jorgensen, M. C. James, C. Jacobsen, S. K. Moestrup, M. J. Clemens, J. Justesen posted by 1 person mtagaya