gbart's Top Recommendations

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	Evolutionarily Conserved Pathways of Energetic Connectivity in Protein Families [My Copy] Science, Vol. 286, No. 5438. (8 October 1999), pp. 295-299. by Steve W. Lockless, Rama Ranganathan posted by 24 people mgomes Marcotte_Lab qluo stevanspringer Einat marcius eckart_bindewald analogAI dgront caporaso sriram_s choonpeng Haggan rabio mottonen zambujo structural_bioinformatics FAB-lab biomedical-nlp BioinfoCIPF SGU-CIPF mingzhi bethbromley ca3295
	Protein families and their evolution-a structural perspective. [My Copy] Annu Rev Biochem, Vol. 74 (2005), pp. 867-900. by C. A. Orengo, J. M. Thornton posted by 25 people ucbcjbm flbarroso kumar_physics yuslinaz ssgong ana barry tjimenez jwm chad_davis Einat Schmidtc marcius sriram_s ezotenko redelings medic0747 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF nigham sim82
	The relation between the divergence of sequence and structure in proteins. [My Copy] The EMBO journal, Vol. 5, No. 4. (April 1986), pp. 823-826. by C. Chothia, A. M. Lesk posted by 20 people martainn ucbcjbm bertelsen semin sgoetz cen4ik ana pansapiens jwm Einat marcius xdeupi ffranca insectopalo structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	Fragnostic: walking through protein structure space. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005) by I. Friedberg, A. Godzik posted by 12 people ana barry pansapiens aalibes Einat marcius alexg eweaver structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Allosteric determinants in guanine nucleotide-binding proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 24. (25 November 2003), pp. 14445-14450. by M. E. Hatley, S. W. Lockless, S. K. Gibson, A. G. Gilman, R. Ranganathan posted by 11 people qluo barry lna Einat marcius caporaso structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF
	Natural-like function in artificial WW domains [My Copy] Nature, Vol. 437, No. 7058., pp. 579-583. by William P. Russ, Drew M. Lowery, Prashant Mishra, Michael B. Yaffe, Rama Ranganathan posted by 12 people ana barry balajis marcius caporaso structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF bethbromley ca3295
	Progress in Modeling of Protein Structures and Interactions [My Copy] Science, Vol. 310, No. 5748. (28 October 2005), pp. 638-642. by Ora Schueler-Furman, Chu Wang, Phil Bradley, Kira Misura, David Baker posted by 22 people krapnik rabio ucbcjbm paddydu flbarroso thaliana jwm vavi bicko KyuhoLee marcius eweaver tny nickolay dgront rsantana mirzazadeh insectopalo BioinfoCIPF SGU-CIPF barry structural_bioinformatics
	The relationship between domain duplication and recombination. [My Copy] Journal of molecular biology, Vol. 346, No. 1. (11 February 2005), pp. 355-365. by Christine Vogel, Sarah A. Teichmann, Jose Pereira-Leal posted by 10 people ana marcius tny cjeans martainn mdimon structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 43. (26 October 2004), pp. 15346-15351. by B. Qian, A. R. Ortiz, D. Baker posted by 10 people aqeel ana barry lna marcius dgront structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function. [My Copy] J Mol Biol, Vol. 291, No. 1. (6 August 1999), pp. 177-196. by L. A. Mirny, E. I. Shakhnovich posted by 8 people ana barry Einat marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	ROCR: visualizing classifier performance in R. [My Copy] Bioinformatics (11 August 2005) by Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer posted by 16 people natstreet druvus BragilMassoud ana barry Ayest lyongu marcius schlauchi gokhan za structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF bertelsen
	Protein molecular function prediction by Bayesian phylogenomics. [My Copy] PLoS computational biology, Vol. 1, No. 5. (7 October 2005) by B. E. Engelhardt, M. I. Jordan, K. E. Muratore, S. E. Brenner posted by 14 people sgoetz engelhardt kentsis ana eoghanharr Einat dlr marcius sriram_s bootsy structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Practical lessons from protein structure prediction. [My Copy] Nucleic Acids Res, Vol. 33, No. 6. (2005), pp. 1874-1891. by K. Ginalski, N. V. Grishin, A. Godzik, L. Rychlewski posted by 13 people mcbla ana aalibes thaliana okarsligil marcius duartemolha dgront mirzazadeh structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	A new progressive-iterative algorithm for multiple structure alignment. [My Copy] Bioinformatics (7 June 2005) by Dmitry Lupyan, Alejandra Leo-Macias, Angel R R. Ortiz posted by 10 people tomjad sebk ana dimka marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF tjimenez
	SCOPPI: a structural classification of protein-protein interfaces. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006) by Christof Winter, Andreas Henschel, Wan Kyu K. Kim, Michael Schroeder posted by 15 people winterschlaefer higueruelo sjcockell ana kuhn bicko chad_davis marcius choonpeng structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF Evangelia kintoki
	MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading. [My Copy] Proteins, Vol. 49, No. 3. (15 November 2002), pp. 350-364. by L. Lu, H. Lu, J. Skolnick posted by 12 people ana bicko chad_davis marcius sangeetha ruvido structural_bioinformatics Bioinformatics insilicodrug BioinfoCIPF SGU-CIPF kgutwin
	Interrogating protein interaction networks through structural biology. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 9. (30 April 2002), pp. 5896-5901. by P. Aloy, R. B. Russell posted by 17 people kgutwin tomhebbron bpcusack ana barry baaden bicko lfriedl chad_davis henschel ruvido cjeans tale structural_bioinformatics kdl Bioinformatics Evangelia
	'Protein Peeling': an approach for splitting a 3D protein structure into compact fragments [My Copy] Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 129-133. by Jean-Christophe Gelly, Alexandre G. de Brevern, Serge Hazout posted by 11 people ana barry dimka ttjoseph marcius nickolay choonpeng structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Protein structure comparison by alignment of distance matrices. [My Copy] Journal of molecular biology, Vol. 233, No. 1. (5 September 1993), pp. 123-138. by L. Holm, C. Sander posted by 10 people jwm tjimenez BragilMassoud ana nigham dgront siebertm structural_bioinformatics Bioinformatics sim82
	3DCoffee: combining protein sequences and structures within multiple sequence alignments. [My Copy] J Mol Biol, Vol. 340, No. 2. (2 July 2004), pp. 385-395. by O. O'Sullivan, K. Suhre, C. Abergel, D. G. Higgins, C. Notredame posted by 9 people ana jwm analogAI structural_bioinformatics Radiation_Damage Stressosome Bioinformatics edvin nickolay
	Convergent evolution as a mechanism for pathogenic adaptation. [My Copy] Trends Microbiol (7 September 2005) by Sergey Sikora, Alex Strongin, Adam Godzik posted by 6 people ana marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Long- and short-range interactions in native protein structures are consistent/minimally frustrated in sequence space. [My Copy] Proteins, Vol. 50, No. 1. (1 January 2003), pp. 35-43. by S. Miyazawa, R. L. Jernigan posted by 6 people ana marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	The C-type lectin fold as an evolutionary solution for massive sequence variation [My Copy] Nature Structural & Molecular Biology, Vol. 12, No. 10. (18 September 2005), pp. 886-892. by Stephen A. Mcmahon, Jason L. Miller, Jeffrey A. Lawton, et al.Donald E. Kerkow, Asher Hodes, Marc A. Marti-Renom, Sergei Doulatov, Eswar Narayanan, Andrej Sali, Jeff F. Miller, Partho Ghosh posted by 7 people stevanspringer ana marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dumpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted by 41 people tomhebbron ajbattle mgomes Scis0000002 lawraga bicko saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology phoenixzxl larsjuhljensen ellakat frohike carlk ethkim
	MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison. [My Copy] Protein science : a publication of the Protein Society, Vol. 11, No. 11. (1 November 2002), pp. 2606-2621. by Angel R. Ortiz, Charlie E. Strauss, Osvaldo Olmea posted by 11 people tomjad awarlau ana iakes dimka jwm analogAI structural_bioinformatics Bioinformatics sebk tjimenez
	Darwinian Evolution Can Follow Only Very Few Mutational Paths to Fitter Proteins [My Copy] Science, Vol. 312, No. 5770. (7 April 2006), pp. 111-114. by Daniel M. Weinreich, Nigel F. Delaney, Mark A. Depristo, Daniel L. Hartl posted by 20 people stevanspringer barry pansapiens imouthesmp dayjm Einat marcius i41m nirfriedman cmm RowanBarrett ramensky Vaquero structural_bioinformatics Bioinformatics FAB-lab BioinfoCIPF SGU-CIPF Ema bpcusack
	Solving the protein sequence metric problem [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 18. (3 May 2005), pp. 6395-6400. by William R. Atchley, Jieping Zhao, Andrew D. Fernandes, Tanja DrÃ¼ke posted by 5 people ana barry structural_bioinformatics Bioinformatics friendpine
	CATH--a hierarchic classification of protein domain structures. [My Copy] Structure (London, England : 1993), Vol. 5, No. 8. (15 August 1997), pp. 1093-1108. by C. A. Orengo, A. D. Michie, S. Jones, D. T. Jones, M. B. Swindells, J. M. Thornton posted by 19 people ucbcjbm flbarroso kumar_physics semin sebk tjimenez dimka jwm chad_davis Einat caporaso structural_bioinformatics Radiation_Damage Stressosome biomedical-nlp massivemayhem sim82 jteyra gulkur
	Evolution of function in protein superfamilies, from a structural perspective [My Copy] Journal of Molecular Biology, Vol. 307, No. 4. (6 April 2001), pp. 1113-1143. by Annabel E. Todd, Christine A. Orengo, Janet M. Thornton posted by 13 people ucbcjbm flbarroso yuslinaz sgoetz ana kuhn tny sriram_s cdallett uz_labu_laimi structural_bioinformatics Bioinformatics sim82
	Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design. [My Copy] Nucleic Acids Res, Vol. 33, No. 18. (2005), pp. 5861-5867. by Gong Cheng, Bin Qian, Ram Samudrala, David Baker posted by 10 people bicko Einat marcius alexg nickolay sriram_s structural_bioinformatics BioinfoCIPF SGU-CIPF ladab
	Protein Superfamily Evolution and the Last Universal Common Ancestor (LUCA) [My Copy] Journal of Molecular Evolution by Juan A. G. Ranea, Antonio Sillero, Janet M. Thornton, Christine A. Orengo posted by 9 people MuraLab ucbcjbm ana barry tny structural_bioinformatics Bioinformatics grottenolm jwm
	An analysis of core deformations in protein superfamilies. [My Copy] Biophys J, Vol. 88, No. 2. (February 2005), pp. 1291-1299. by A. Leo-Macias, P. Lopez-Romero, D. Lupyan, D. Zerbino, A. R. Ortiz posted by 10 people apaydin ana barry lna dimka aqeel insectopalo structural_bioinformatics Bioinformatics edvin
	How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins [My Copy] Journal of Molecular Biology, Vol. 136, No. 3. (25 January 1980), pp. 225-230. by Arthur M. Lesk, Cyrus Chothia posted by 7 people ana barry marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions [My Copy] Acta Crystallographica Section D: Biological Crystallography, Vol. 60, No. 1. (01 December 2004), pp. 2256-2268. by Krissinel, E., Henrick, K. posted by 8 people barry jwm analogAI robert structural_bioinformatics Radiation_Damage Stressosome Bioinformatics
	Evaluation of protein fold comparison servers. [My Copy] Proteins, Vol. 54, No. 2. (1 February 2004), pp. 260-270. by M. Novotny, D. Madsen, G. J. Kleywegt posted by 7 people reyez ana jwm structural_bioinformatics Radiation_Damage Stressosome Bioinformatics
	The properties of protein family space depend on experimental design [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2618-2622. by Victor Kunin, Sarah A. Teichmann, Martijn A. Huynen, Christos A. Ouzounis posted by 5 people ana barry cjeans structural_bioinformatics Bioinformatics
	Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 10. (13 May 2003), pp. 5772-5777. by B. Ma, T. Elkayam, H. Wolfson, R. Nussinov posted by 13 people tbinbal dkoveal mdimmic barry bicko lyongu nickolay choonpeng cjeans carlescorbi structural_bioinformatics Bioinformatics ladab
	Alternative alignments from comparison of protein structures [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 56, No. 3. (2 April 2004), pp. 519-527. by Edward S. Shih, Ming-Jing Hwang posted by 9 people ana barry Einat eweaver dchughes structural_bioinformatics Bioinformatics G4ID Genetics-of-Gambling
	Evolution of protein fold in the presence of functional constraints [My Copy] Current Opinion in Structural Biology In Nucleic acids/Sequences and topology - Anna Marie Pyle and Jonathan Widom/Nick V Grishin and Sarah A Teichmann, Vol. 16, No. 3. (June 2006), pp. 399-408. by Antonina Andreeva, Alexey G. Murzin posted by 7 people ana barry Einat tny cjeans structural_bioinformatics Bioinformatics
	Automatic classification of protein structure by using Gauss integrals. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 1. (7 January 2003), pp. 119-124. by P. Rogen, B. Fain posted by 6 people ana barry dimka tny structural_bioinformatics Bioinformatics
	The Protein Data Bank [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242. by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne posted by 50 people krapnik barmak7282 viktor21614 badi ucbcjbm TLVincent maria_hauser Martin8223 tomjad Diego_Prada flbarroso Taguan oceanwind dsmueller fisherp semin MarcoAlvarez kumar_physics References for 3DSim paper LamBras RamuAnandakrishnan nlapalu reyez nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon aengisch debatebob massivemayhem gisle girschick selrac Radiation_Damage Stressosome biomedical-nlp beta tji higueruelo boris_aguilar sebk timg
	Correlations Among Amino Acid Sites in bHLH Protein Domains: An Information Theoretic Analysis [My Copy] Mol Biol Evol, Vol. 17, No. 1. (1 January 2000), pp. 164-178. by William R. Atchley, Kurt R. Wollenberg, Walter M. Fitch, Werner Terhalle, Andreas W. Dress posted by 5 people mgomes barry structural_bioinformatics Bioinformatics friendpine
	Divergent evolution within protein superfolds inferred from profile-based phylogenetics. [My Copy] Journal of molecular biology, Vol. 354, No. 3. (2 December 2005), pp. 722-737. by Douglas L. Theobald, Deborah S. Wuttke posted by 11 people martainn cmura yuslinaz ana barry dlr caporaso structural_bioinformatics Bioinformatics biomedical-nlp McCammon
	Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins. [My Copy] J Mol Biol, Vol. 307, No. 5. (13 April 2001), pp. 1487-1502. by R. Landgraf, I. Xenarios, D. Eisenberg posted by 10 people ramiro2k barry pansapiens sriram_s cjeans structural_bioinformatics Bioinformatics mingzhi Pao-Yang marti
	Protein structure prediction and structural genomics. [My Copy] Science, Vol. 294, No. 5540. (5 October 2001), pp. 93-96. by D. Baker, A. Sali posted by 14 people mijam newton1234 saunders taikoo ana vavi dgront sriram_s mirzazadeh structural_bioinformatics Bioinformatics mingzhi granujilla janasont
	Hot regions in protein--protein interactions: the organization and contribution of structurally conserved hot spot residues. [My Copy] J Mol Biol, Vol. 345, No. 5. (4 February 2005), pp. 1281-1294. by O. Keskin, B. Ma, R. Nussinov posted by 12 people marti mdimmic ana barry baaden okarsligil bicko j3xucite bilab xz structural_bioinformatics Bioinformatics
	Structural mechanisms for domain movements in proteins [My Copy] Biochemistry, Vol. 33, No. 22. (1994), pp. 6739-6749. by M. Gerstein, A. Lesk, C. Chothia posted by 10 people ana barry pansapiens tny joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	A consensus view of fold space: combining SCOP, CATH, and the Dali Domain Dictionary. [My Copy] Protein Sci, Vol. 12, No. 10. (October 2003), pp. 2150-2160. by R. Day, D. A. Beck, R. S. Armen, V. Daggett posted by 7 people ana barry tjimenez dimka hmk structural_bioinformatics Bioinformatics
	Evolution of the Protein Repertoire [My Copy] Science, Vol. 300, No. 5626. (13 June 2003), pp. 1701-1703. by Cyrus Chothia, Julian Gough, Christine Vogel, Sarah A. Teichmann posted by 6 people karbak ana barry tny structural_bioinformatics Bioinformatics
	New avenues in protein function prediction. [My Copy] Protein Sci, Vol. 15, No. 6. (June 2006), pp. 1527-1529. by I. Friedberg, M. Jambon, A. Godzik posted by 9 people ana aalibes tjimenez marcius topsan structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and bayesian scoring functions [My Copy] Journal of Molecular Biology, Vol. 268, No. 1. (25 April 1997), pp. 209-225. by K. Simons posted by 15 people chemrahul82 paddydu Diego_Prada reyez guxiyou ana jwm vavi wouterboomsma j3xucite hmk structural_bioinformatics Bioinformatics mijam joule
	Assessing local structural perturbations in proteins. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (13 September 2005) by Martin A. Lema, Julian Echave posted by 6 people ana barry pansapiens Einat structural_bioinformatics Bioinformatics
	A model for statistical significance of local similarities in structure. [My Copy] J Mol Biol, Vol. 326, No. 5. (7 March 2003), pp. 1307-1316. by A. Stark, S. Sunyaev, R. B. Russell posted by 11 people karbak ana nigham chad_davis thamelry nickolay robert scis0000001 siebertm structural_bioinformatics Bioinformatics
	Improved side-chain modeling for protein-protein docking. [My Copy] Protein Sci, Vol. 14, No. 5. (May 2005), pp. 1328-1339. by C. Wang, O. Schueler-Furman, D. Baker posted by 15 people dgront csrocha barry aqeel jwm bicko yongzhao blackbart bluvsh1 hmk selrac structural_bioinformatics Bioinformatics TSRI_MGL Evangelia
	Characterizing Conserved Structural Contacts by Pair-wise Relative Contacts and Relative Packing Groups [My Copy] Journal of Molecular Biology, Vol. 354, No. 3. (2 December 2005), pp. 706-721. by Bradley J. Holmes, Jerry Tsai posted by 5 people ana barry Einat structural_bioinformatics Bioinformatics
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted by 74 people rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser jbhiatt yylin mgomes BioNica idoerg pjcite swp09 kgutwin mcbla cpwardell References for 3DSim paper johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 EisenLab biomedical-nlp Microbial-Ecology Plantandetc mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM
	FSSA: a novel method for identifying functional signatures from structural alignments. [My Copy] Bioinformatics (28 April 2005) by Kai Wang, Ram Samudrala posted by 5 people ana barry Einat structural_bioinformatics Bioinformatics
	Structure, function, and evolution of transient and obligate protein-protein interactions. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 31. (2 August 2005), pp. 10930-10935. by Julian Mintseris, Zhiping Weng posted by 15 people timg mgomes barry bjorns wiehe julianm bicko chad_davis cjeans structural_bioinformatics ZLAB Bioinformatics Evangelia marti higueruelo
	Normal mode analysis of macromolecular motions in a database framework: developing mode concentration as a useful classifying statistic. [My Copy] Proteins, Vol. 48, No. 4. (1 September 2002), pp. 682-695. by W. G. Krebs, V. Alexandrov, C. A. Wilson, N. Echols, H. Yu, M. Gerstein posted by 9 people apaydin ana barry aqeel yongzhao martainn structural_bioinformatics Bioinformatics TSRI_MGL
	Derivation of rules for comparative protein modeling from a database of protein structure alignments. [My Copy] Protein Sci, Vol. 3, No. 9. (September 1994), pp. 1582-1596. by A. Sali, J. P. Overington posted by 7 people ana bicko marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Conservation of Orientation and Sequence in Protein Domain-Domain Interactions [My Copy] Journal of Molecular Biology, Vol. 345, No. 5., pp. 1265-1279. by Stephen J. Littler, Simon J. Hubbard posted by 8 people ana bicko Schmidtc cjeans winterschlaefer structural_bioinformatics Bioinformatics wilbur
	The Relationship between the Flexibility of Proteins and their Conformational States on Forming Protein-Protein Complexes with an Application to Protein-Protein Docking [My Copy] Journal of Molecular Biology, Vol. 347, No. 5. (15 April 2005), pp. 1077-1101. by Graham R. Smith, Michael Sternberg, Paul A. Bates posted by 10 people ana barry aqeel bicko yongzhao ttjoseph structural_bioinformatics Bioinformatics TSRI_MGL jteyra
	Localization of protein-binding sites within families of proteins. [My Copy] Protein Sci, Vol. 14, No. 9. (September 2005), pp. 2350-2360. by D. Korkin, F. P. Davis, A. Sali posted by 9 people barry tjimenez bicko marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF wilbur
	Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast. [My Copy] J Mol Biol, Vol. 307, No. 3. (30 March 2001), pp. 929-938. by J. Park, M. Lappe, S. A. Teichmann posted by 8 people medic0747 chad_davis ronkeliz ana tjimenez cjeans structural_bioinformatics Bioinformatics
	Fold change in evolution of protein structures. [My Copy] J Struct Biol, Vol. 134, No. 2-3. (n 2001), pp. 167-185. by N. V. Grishin posted by 10 people robfsouza tomhebbron matzke ana barry pansapiens krishnaJCSG martainn structural_bioinformatics Bioinformatics
	Simultaneous determination of protein structure and dynamics [My Copy] Nature, Vol. 433, No. 7022. (13 January 2005), pp. 128-132. by Kresten Lindorff-Larsen, Robert B. Best, Mark A. Depristo, Christopher M. Dobson, Michele Vendruscolo posted by 19 people Diego_Prada xdeupi Structural Biology Group TorVergata A_Coletta_Thesis karbak apaydin barry lillekatt baaden lna dgront allmensch daevans rsantana jlh64 structural_bioinformatics Bioinformatics biehl rph
	Clustering algorithms for identifying core atom sets and for assessing the precision of protein structure ensembles [My Copy] Proteins: Structure, Function, and Genetics, Vol. 59, No. 4. (8 April 2005), pp. 673-686. by David A. Snyder, Gaetano T. Montelione posted by 6 people karbak ana barry dgront structural_bioinformatics Bioinformatics
	Small-world view of the amino acids that play a key role in protein folding. [My Copy] Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 65, No. 6 Pt 1. (June 2002) by M. Vendruscolo, N. V. Dokholyan, E. Paci, M. Karplus posted by 12 people ana barry shantanu choonpeng structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Multi-domain Proteins in the Three Kingdoms of Life: Orphan Domains and Other Unassigned Regions [My Copy] Journal of Molecular Biology, Vol. 348, No. 1. (22 April 2005), pp. 231-243. by Diana Ekman, Asa K. Bjorklund, Johannes Frey-Skott, Arne Elofsson posted by 6 people wiedenhoeft ana tny choonpeng structural_bioinformatics Bioinformatics
	A normalised scale for structural genomics target ranking: The OB-Score. [My Copy] FEBS Lett, Vol. 580, No. 16. (10 July 2006), pp. 4005-4009. by I. M. Overton, G. J. Barton posted by 6 people ana marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Why highly expressed proteins evolve slowly. [My Copy] Proc Natl Acad Sci U S A (21 September 2005) by D Allan A. Drummond, Jesse D D. Bloom, Christoph Adami, Claus O O. Wilke, Frances H H. Arnold posted by 23 people codonusage allmaya michaelbarton rklancer stevanspringer bjorns imouthesmp aprasad dayjm Einat marcius xwbcn penka balabu malcook structural_bioinformatics Nie FAB-lab BioinfoCIPF SGU-CIPF balicea RamuAnandakrishnan wilbur
	Mapping the protein universe. [My Copy] Science, Vol. 273, No. 5275. (2 August 1996), pp. 595-603. by L. Holm, C. Sander posted by 10 people operon ana barry dimka robert AbnerCYH structural_bioinformatics Bioinformatics sim82 laurabailey
	Prediction of protein three-dimensional structures in insertion and deletion regions: a procedure for searching data bases of representative protein fragments using geometric scoring criteria. [My Copy] J Mol Biol, Vol. 253, No. 1. (13 October 1995), pp. 114-131. by T. Fechteler, U. Dengler, D. Schomburg posted by 7 people ana marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF GermanErlenkamp
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	Understanding hierarchical protein evolution from first principles. [My Copy] J Mol Biol, Vol. 312, No. 1. (7 September 2001), pp. 289-307. by N. V. Dokholyan, E. I. Shakhnovich posted by 6 people mdimmic ana barry pansapiens structural_bioinformatics Bioinformatics
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	The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. [My Copy] Nucleic acids research. , Vol. 33, No. Database issue. (1 January 2005) by Frances Pearl, Annabel Todd, Ian Sillitoe, et al.Mark Dibley, Oliver Redfern, Tony Lewis, Christopher Bennett, Russell Marsden, Alistair Grant, David Lee, Adrian Akpor, Michael Maibaum, Andrew Harrison, Timothy Dallman, Gabrielle Reeves, Ilhem Diboun, Sarah Addou, Stefano Lise, Caroline Johnston, Antonio Sillero, Janet Thornton, Christine Orengo posted by 8 people Orengo Group Journal Picks sillitoe barry tjimenez chrn alexg structural_bioinformatics Bioinformatics
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	Structural diversity of domain superfamilies in the CATH database. [My Copy] Journal of molecular biology, Vol. 360, No. 3. (14 July 2006), pp. 725-741. by Gabrielle A. Reeves, Timothy J. Dallman, Oliver C. Redfern, Adrian Akpor, Christine A. Orengo posted by 10 people martainn yuslinaz barry marcius sobolevnrm structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF baker-group
	A systematic comparison of protein structure classifications: SCOP, CATH and FSSP. [My Copy] Structure Fold Des, Vol. 7, No. 9. (15 September 1999), pp. 1099-1112. by C. Hadley, D. T. Jones posted by 5 people ana chad_davis cjeans structural_bioinformatics Bioinformatics
	An analysis of simultaneous variation in protein structures. [My Copy] Protein Eng, Vol. 10, No. 4. (April 1997), pp. 307-316. by G. Chelvanayagam, A. Eggenschwiler, L. Knecht, G. H. Gonnet, S. A. Benner posted by 5 people ana barry structural_bioinformatics Bioinformatics wilbur
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	Classification and evolution of P-loop GTPases and related ATPases. [My Copy] J Mol Biol, Vol. 317, No. 1. (15 March 2002), pp. 41-72. by D. D. Leipe, Y. I. Wolf, E. V. Koonin, L. Aravind posted by 7 people laurabailey barry Einat tny leemary4 structural_bioinformatics Bioinformatics
	Core deformations in protein families: a physical perspective. [My Copy] Biophys Chem, Vol. 115, No. 2-3. (1 April 2005), pp. 125-128. by A. Leo-Macias, P. Lopez-Romero, D. Lupyan, D. Zerbino, A. R. Ortiz posted by 6 people ana lna dimka structural_bioinformatics Bioinformatics edvin
	A new progressive-iterative algorithm for multiple structure alignment [My Copy] Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3255-3263. by Dmitry Lupyan, Alejandra Leo-Macias, Angel R. Ortiz posted by 6 people ana dimka analogAI insectopalo structural_bioinformatics Bioinformatics
	Searching for functional sites in protein structures. [My Copy] Current opinion in chemical biology, Vol. 8, No. 1. (February 2004), pp. 3-7. by S. Jones, J. M. Thornton posted by 9 people qluo BragilMassoud LeightonP chrn Einat proteasome structural_bioinformatics nickolay jwm
	Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures. [My Copy] J Mol Biol, Vol. 346, No. 4. (4 March 2005), pp. 1173-1188. by R. Kolodny, P. Koehl, M. Levitt posted by 8 people karbak ana lulab balajis analogAI structural_bioinformatics Bioinformatics reyez
	Sequence variations within protein families are linearly related to structural variations. [My Copy] J Mol Biol, Vol. 323, No. 3. (25 October 2002), pp. 551-562. by P. Koehl, M. Levitt posted by 6 people ana barry okarsligil insectopalo structural_bioinformatics Bioinformatics
	Structural biologyForm and function instructions [My Copy] Nature, Vol. 437, No. 7058. (21 September 2005), pp. 486-487. by Jeffery W. Kelly posted by 5 people ana barry dayjm structural_bioinformatics Bioinformatics
	Empirical and structural models for insertions and deletions in the divergent evolution of proteins. [My Copy] J Mol Biol, Vol. 229, No. 4. (20 February 1993), pp. 1065-1082. by S. A. Benner, M. A. Cohen, G. H. Gonnet posted by 9 people gjuggler ana barry mattjb martainn structural_bioinformatics Bioinformatics ComplexAdaptiveSystems DSTO-CAS
	Recoverable one-dimensional encoding of protein three-dimensional structures. [My Copy] Bioinformatics (18 February 2005) by Akira R R. Kinjo, Ken Nishikawa posted by 7 people karbak ana barry penka mtw structural_bioinformatics Bioinformatics
	Imprint of evolution on protein structures. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 9. (2 March 2004), pp. 2846-2851. by G. Tiana, B. E. Shakhnovich, N. V. Dokholyan, E. I. Shakhnovich posted by 5 people ana barry pansapiens structural_bioinformatics Bioinformatics
	Small libraries of protein fragments model native protein structures accurately. [My Copy] J Mol Biol, Vol. 323, No. 2. (18 October 2002), pp. 297-307. by R. Kolodny, P. Koehl, L. Guibas, M. Levitt posted by 6 people ana barry eckart_bindewald j3xucite structural_bioinformatics Bioinformatics
	Gene duplication: the genomic trade in spare parts. [My Copy] PLoS Biol, Vol. 2, No. 7. (July 2004) by M. Hurles posted by 9 people wangbo balicea azazello mtruksa ana barry structural_bioinformatics Bioinformatics signalduplication
	The Relationship Between Sequence and Interaction Divergence in Proteins [My Copy] Journal of Molecular Biology, Vol. 332, No. 5. (3 October 2003), pp. 989-998. by Patrick Aloy, Hugo Ceulemans, Alexander Stark, Robert B. Russell posted by 7 people ana pansapiens eweaver structural_bioinformatics Bioinformatics Evangelia RebeccaHamer
	Objective comparison of protein structures: error-scaled difference distance matrices. [My Copy] Acta Crystallogr D Biol Crystallogr, Vol. 56 ( Pt 6) (June 2000), pp. 714-721. by T. R. Schneider posted by 5 people ana barry pansapiens structural_bioinformatics Bioinformatics
	Structure alignment via Delaunay tetrahedralization. [My Copy] Proteins (26 April 2005) by Jeffrey Roach, Shantanu Sharma, Maryna Kapustina, Charles W W. Carter posted by 13 people MuraLab BragilMassoud ana barry shantanu structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
	Convergent evolution of domain architectures (is rare). [My Copy] Bioinformatics (Oxford, England) (7 December 2004) by Julian Gough posted by 6 people martainn matzke ana barry structural_bioinformatics Bioinformatics