grahamc's Top Recommendations

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	Protein networks in disease. [My Copy] Genome research, Vol. 18, No. 4. (1 April 2008), pp. 644-652. by Trey Ideker, Roded Sharan posted by 28 people shikin carlk isimpson chica saket zufar kaarsinogen giovenko guhjy balicea tmmurali Borelli jwdietrich frohike bootsy nedwards roys mclarenv phoenixzxl brianb schuylrp jfr paolomarcatili gracio thomaskelder ptrobajo raiyar zwang
	How complete are current yeast and human protein-interaction networks? [My Copy] Genome Biology, Vol. 7, No. 11. (01 December 2006), 120. by G. Traver Hart, Arun Ramani, Edward Marcotte posted by 9 people jperkins suteedee waqaralikeble eukfn shikin Pao-Yang GeneGo carlk phoenixzxl
	Inferring domain-domain interactions from protein-protein interactions. [My Copy] Genome research, Vol. 12, No. 10. (October 2002), pp. 1540-1548. by Minghua Deng, Shipra Mehta, Fengzhu Sun, Ting Chen posted by 8 people maryee opheliav wnpx neils Pao-Yang phoenixzxl carlk zdai
	Evolution and dynamics of protein interactions and networks [My Copy] Current Opinion in Structural Biology, Vol. 18, No. 3. (June 2008), pp. 349-357. by E. Levy, J. Pereiraleal posted by 9 people saket chica carlk paolomarcatili guhjy neils cabbagesofdoom marck zdai
	Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets [My Copy] Nature Genetics, Vol. 38, No. 3. (24 February 2006), pp. 285-293. by T. K. B. Gandhi, Jun Zhong, Suresh Mathivanan, et al.L. Karthick, K. N. Chandrika, Sujatha S. Mohan, Salil Sharma, Stefan Pinkert, Shilpa Nagaraju, Balamurugan Periaswamy, Goparani Mishra, Kannabiran Nandakumar, Beiyi Shen, Nandan Deshpande, Rashmi Nayak, Malabika Sarker, Jef D. Boeke, Giovanni Parmigiani, Jörg Schultz, Joel S. Bader, Akhilesh Pandey posted by 17 people semin yyby aprildh31 balajis indigoviolet tny spavey TheresaNiederberger cjeans alwinpremanand dejori EisenLab FAB-lab Pao-Yang pmendes carlk cerca
	Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps. [My Copy] Bioinformatics, Vol. 21 Suppl 1 (1 June 2005) by E. Nabieva, K. Jim, A. Agarwal, B. Chazelle, M. Singh posted by 10 people tmmurali okarsligil lfriedl wnpx j3xucite kdl Bioinformatics jiny Pao-Yang carlk
	Estimating the size of the human interactome [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 19. (13 May 2008), pp. 6959-6964. by Michael P. H. Stumpf, Thomas Thorne, Eric de Silva, et al.Ronald Stewart, Hyeong J. An, Michael Lappe, Carsten Wiuf posted by 25 people aelef thegoose2 bicko C. elegans / WormBase tharris zwang chrissp100 sanchezbuelna guhjy phoenixzxl tmmurali neils paolomarcatili mjoach xingxu Ema cabbagesofdoom balicea marck friendpine brianb roys Evangelia dragonrez bpcusack
	Design of protein-interaction specificity gives selective bZIP-binding peptides [My Copy] Nature, Vol. 458, No. 7240. (16 April 2009), pp. 859-864. by Gevorg Grigoryan, Aaron W. Reinke, Amy E. Keating posted by 8 people kgutwin carlk kevinchannon pablocarb twatanab absterga phoenixzxl jbhiatt
	Macromolecular Modeling with Rosetta [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008), pp. 363-382. by Rhiju Das, David Baker posted by 10 people bmduggan choonpeng mijam kgutwin carlk phoenixzxl krapnik flbarroso saunders gisle
	A critical assessment of Mus musculus gene function prediction using integrated genomic evidence [My Copy] Genome Biology, Vol. 9, No. Suppl 1. (2008), S2. by Lourdes P. Castillo, Murat Tasan, Chad Myers, et al.Hyunju Lee, Trupti Joshi, Chao Zhang, Yuanfang Guan, Michele Leone, Andrea Pagnani, Wan Kim, Chase Krumpelman, Weidong Tian, Guillaume Obozinski, Yanjun Qi, Sara Mostafavi, Guan Lin, Gabriel Berriz, Francis Gibbons, Gert Lanckriet, Jian Qiu, Charles Grant, Zafer Barutcuoglu, David Hill, David W. Farley, Chris Grouios, Debajyoti Ray, Judith Blake, Minghua Deng, Michael Jordan, William Noble, Quaid Morris, Judith K. Seetharaman, Ziv B. Joseph, Ting Chen, Fengzhu Sun, Olga Troyanskaya, Edward Marcotte, Dong Xu, Timothy Hughes, Frederick Roth posted by 7 people phoenixzxl saket carlk kgutwin ptrobajo guhjy aconesa
	Use and misuse of the gene ontology annotations [My Copy] Nature Reviews Genetics, Vol. 9, No. 7. (13 May 2008), pp. 509-515. by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici posted by 44 people singhsh epigenetics davidmam Thaverkamp druvus dullhunk 8_01 suizan dolchan Borelli Zephyrus VGreiff klo thomaskelder ilyashl phoenixzxl MarcoAlvarez isakemal bertelsen daforerog jfr djkt guhjy aheilbut mariakmejia cmzmasek A_Olympia logics of knowledge realzhang carlk roys gjuggler fpattyn RamuAnandakrishnan ptrobajo giovenko cabbagesofdoom tmmurali renatomilani capitall marck rvosa FAB-lab bpcusack
	The evolution of modularity in bacterial metabolic networks [My Copy] Proceedings of the National Academy of Sciences (6 May 2008), 0712149105. by Anat Kreimer, Elhanan Borenstein, Uri Gophna, Eytan Ruppin posted by 14 people rouault ocs hryk qwermish deanmalmgren carlk jjray skato_toyaku mjoach tmmurali phoenixzxl roys pinney saket
	Integrating Diverse Data for Structure Determination of Macromolecular Assemblies [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (4 March 2008), pp. 443-477. by Frank Alber, Friedrich Förster, Dmitry Korkin, Maya Topf, Andrej Sali posted by 6 people mijam kgutwin carlk noraziz chad_davis phoenixzxl
	PRINCESS, a Protein Interaction Confidence Evaluation System with Multiple Data Sources [My Copy] Mol Cell Proteomics, Vol. 7, No. 6. (1 June 2008), pp. 1043-1052. by Dong Li, Wanlin Liu, Zhongyang Liu, et al.Jian Wang, Qijun Liu, Yunping Zhu, Fuchu He posted by 5 people carlk anf guhjy kluck phoenixzxl
	The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 3. (22 January 2008), pp. 950-954. by Aviva Presser, Michael B. Elowitz, Manolis Kellis, Roy Kishony posted by 11 people carlk ellarond saket leemond31 robfsouza loukialili pradiptaray cjeans zwang roys phoenixzxl
	Computational prediction of host-pathogen protein protein interactions [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i159-166. by Matthew D. Dyer, T. M. Murali, Bruno W. Sobral posted by 8 people phoenixzxl kshameer Bioinformatics behindtherabbit operon GustavoLacerda carlk cerca
	PDZ Domain Binding Selectivity Is Optimized Across the Mouse Proteome [My Copy] Science, Vol. 317, No. 5836. (20 July 2007), pp. 364-369. by Michael A. Stiffler, Jiunn R. Chen, Viara P. Grantcharova, et al.Ying Lei, Daniel Fuchs, John E. Allen, Lioudmila A. Zaslavskaia, Gavin Macbeath posted by 3 people zwang carlk phoenixzxl
	Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners [My Copy] PLoS Comput Biol, Vol. 3, No. 4. (27 April 2007), e43. by Benjamin A. Shoemaker, Anna R. Panchenko posted by 26 people aceol colmryan timg cerca jperkins chica kiekyon kshameer zdai Robinder giovenko Yanno guhjy aalibes bicko jfr chad_davis cjeans iris_2001 zwang lpfernandes groepl carlk Evangelia higueruelo phoenixzxl
	Revealing static and dynamic modular architecture of the eukaryotic protein interaction network [My Copy] Mol Syst Biol, Vol. 3 (24 April 2007) by Kakajan Komurov, Michael White posted by 9 people Borelli tomhebbron massivemayhem nicoleq zwang mingzhi phoenixzxl ellakat carlk
	Network-based prediction of protein function [My Copy] Molecular Systems Biology, Vol. 3 (13 March 2007) by Roded Sharan, Igor Ulitsky, Ron Shamir posted by 26 people cerca ptrobajo kiekyon AbnerCYH roys jwhitney dragonrez Sonix mtaschuk babakap phoenixzxl druvus pengchy jjray cmmorel wnpx julius mikaelhuss massivemayhem cjeans iris_2001 karfunkel SysbioMPI-TCells mingzhi ellakat carlk
	Predicting domain-domain interactions using a parsimony approach [My Copy] Genome Biology, Vol. 7, No. 11. (09 November 2006), R104. by Katia Guimaraes, Raja Jothi, Elena Zotenko, Teresa Przytycka posted by 7 people dfdong qluo marti cerca phoenixzxl carlk saket
	Integrative approach for computationally inferring protein domain interactions. [My Copy] Bioinformatics, Vol. 19, No. 8. (22 May 2003), pp. 923-929. by S. K. Ng, Z. Zhang, S. H. Tan posted by 5 people semin dyermd antonkratz phoenixzxl carlk
	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dumpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted by 42 people aceol tomhebbron ajbattle mgomes Scis0000002 lawraga bicko saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology phoenixzxl larsjuhljensen ellakat frohike carlk ethkim
	Dynamic complex formation during the yeast cell cycle. [My Copy] Science (New York, N.Y.), Vol. 307, No. 5710. (4 February 2005), pp. 724-727. by U. de Lichtenberg, L. J. Jensen, S. Brunak, P. Bork posted by 14 people chica mdimmic chad_davis balajis wnpx koller massivemayhem cjeans arne dIEMoSIRIS phoenixzxl larsjuhljensen carlk gjuggler
	A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae) [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 14. (8 July 2003), pp. 8348-8353. by Olga G. Troyanskaya, Kara Dolinski, Art B. Owen, Russ B. Altman, David Botstein posted by 24 people phoenixzxl ruichu bertelsen bresiva BioGeek serak dragonrez okarsligil lfriedl balajis eckart_bindewald eweaver luispedro opheliav wnpx nedwards kdl Bioinformatics Evangelia kallberg isimpson carlk srp33 frohike
	A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data [My Copy] Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453. by Ronald Jansen, Haiyuan Yu, Dov Greenbaum, et al.Yuval Kluger, Nevan J. Krogan, Sambath Chung, Andrew Emili, Michael Snyder, Jack F. Greenblatt, Mark Gerstein posted by 25 people cerca hagechouchin443 aelef Robinder lfriedl balajis opheliav yuval wnpx nickluscombe ruvido raiyar massivemayhem kdang dbgrant nedwards karfunkel kdl EBI-regulation Evangelia shung phoenixzxl penpen926 carlk frohike
	Network Motifs: Simple Building Blocks of Complex Networks [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 824-827. by R. Milo, S. Shen-Orr, S. Itzkovitz, N. Kashtan, D. Chklovskii, U. Alon posted by 83 people antonkratz jaspervoskuilen complex networks Sergey_gerbek nurban balabu ocs mjoach makrehchi schwartzjmc poirel tomhebbron arsyed vtraag sergiun fierykylin Akimasa operon GEB dlobo daforerog chasmand wei_tang darian orahcio babakap brewbooks phoenixzxl Md_2007 mtagaya heliopais kaarsinogen galyardt cswinburne mullonc camster korakot aalibes ChaTo imouthesmp Borelli lfriedl alexg balicea tny ssb wnpx ddahlem cmm donade neveaire griota gurkanbebek jtaylor josepe iris_2001 michaelmampaey rebeccamancy karfunkel lenov Philosophy_of_Information dbk-lab Blog_and_Wiki_Research kdl FAB-lab ColDyn ADMiRes Evangelia roys tfogal zibuyu maralena stefanoallesina pbull cmor renatomilani shikin GeneGo carlk applesnow subhacom i-stevenson ethkim
	A comparison of common programming languages used in bioinformatics [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 82. by Mathieu Fourment, Michael Gillings posted by 21 people reyez antonkratz daforerog treangen natstreet nlapalu druvus jamselem dullhunk laughcry ibuch urgi sci91078 renatomilani xili03 phoenixzxl guhjy chad_davis barry Bioinformatics structural_bioinformatics
	Heme attachment motif mobility tunes cytochrome c redox potential. [My Copy] Biochemistry, Vol. 46, No. 42. (23 October 2007), pp. 11753-11760. by L. V. Michel, T. Ye, S. E. Bowman, et al.B. D. Levin, M. A. Hahn, B. S. Russell, S. J. Elliott, K. L. Bren posted by 1 person paolomarcatili
	Structural classification of CDR-H3 revisited: A lesson in antibody modeling. [My Copy] Proteins (12 May 2008) by Daisuke Kuroda, Hiroki Shirai, Masato Kobori, Haruki Nakamura posted by 1 person paolomarcatili
	Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles. [My Copy] BMC bioinformatics, Vol. 9 Suppl 1 (2008) by R. T. Tsai, H. C. Hung, H. J. Dai, Y. W. Lin, W. L. Hsu posted by 2 people guhjy paolomarcatili
	Genome-wide inference of protein interaction sites: lessons from the yeast high-quality negative protein-protein interaction dataset. [My Copy] Nucleic Acids Res (14 February 2008) by Jie Guo, Xiaomei Wu, Da-Yong Y. Zhang, Kui Lin posted by 5 people tmmurali neils kluck stef_lise paolomarcatili
	Are protein complexes made of cores, modules and attachments? [My Copy] Proteomics (4 January 2008) by Chi Nam Ignatius N. Pang, James Robert R. Krycer, Angela Lek, Marc Ronald R. Wilkins posted by 2 people kluck paolomarcatili
	High-confidence prediction of global interactomes based on genome-wide coevolutionary networks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 3. (22 January 2008), pp. 934-939. by David Juan, Florencio Pazos, Alfonso Valencia posted by 20 people dfdong ptrobajo biomcgary qluo winterschlaefer marti tmmurali brant balicea sebastien_vigneau bluto cjeans aconesa microbiology_nijmegen Katje roys friendpine huali mdstobbe paolomarcatili
	Protein-protein interaction networks and biology--what's the connection? [My Copy] Nature biotechnology, Vol. 26, No. 1. (January 2008), pp. 69-72. by Luke Hakes, John W. Pinney, David L. Robertson, Simon C. Lovell posted by 21 people ptrobajo colmryan lawraga flbarroso Yanno guhjy tmmurali jfr balicea dullhunk neils mikaelhuss cjeans nedwards biehl shikin mclarenv GeneGo Yumyai paolomarcatili zdai
	Computational Identification of Potential Molecular Interactions in Arabidopsis [My Copy] Plant Physiol., Vol. 151, No. 1. (1 September 2009), pp. 34-46. by Mingzhi Lin, Bin Hu, Lijuan Chen, et al.Peng Sun, Yi Fan, Ping Wu, Xin Chen posted by 1 person carlk
	Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics [My Copy] PLoS Biol, Vol. 7, No. 10. (6 October 2009), e1000213. by Zhihua Li, Insuk Lee, Emily Moradi, Nai-Jung Hung, Arlen W. Johnson, Edward M. Marcotte posted by 5 people carlk tmmurali djkt lp2 ptrobajo
	Genetic and environmental influences on the size of specific brain regions in midlife: The VETSA MRI study [My Copy] NeuroImage (26 September 2009) by William S. Kremen, Elizabeth Prom-Wormley, Matthew S. Panizzon, et al.Lisa T. Eyler, Bruce Fischl, Michael C. Neale, Carol E. Franz, Michael J. Lyons, Jennifer Pacheco, Michele E. Perry posted by 1 person carlk
	Exploration of Uncharted Regions of the Protein Universe [My Copy] PLoS Biol, Vol. 7, No. 9. (29 September 2009), e1000205. by Lukasz Jaroszewski, Zhanwen Li, Sri S. Krishna, et al.Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik posted by 8 people kiekyon Orengo Group Journal Picks CorinYeats carlk bpcusack Journal picks ppgardne druvus
	Note on robust critical graphs with large odd girth [My Copy] Discrete Mathematics (19 April 2009) by E. Năstase, V. Rödl, M. Siggers posted by 1 person carlk
	Circuits through prescribed vertices in <I>k</I>-connected <I>k</I>-regular graphs [My Copy] Journal of Graph Theory, Vol. 39, No. 2. (2002), pp. 145-163. by Roland Häggkvist, Wolfgang Mader posted by 1 person carlk
	Nonseparating cycles in <I>K</I>-Connected graphs [My Copy] Journal of Graph Theory, Vol. 5, No. 4. (1981), pp. 351-354. by Carsten Thomassen posted by 1 person carlk
	Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function [My Copy] Genome Biology, Vol. 10, No. 9. (2009), R97. by James Costello, Mehmet Dalkilic, Scott Beason, et al.Jeff Gehlhausen, Rupali Patwardhan, Sumit Middha, Brian Eads, Justen Andrews posted by 11 people Orengo Group Journal Picks meanerelk abc623 Borelli carlk bdessailly sotacam kiekyon druvus BergmanLab daveGerrard
	Structure of Heterogeneous Networks [My Copy] (11 Jun 2009) by Rumi Ghosh, Kristina Lerman posted by 1 person carlk
	Understanding Modularity in Molecular Networks Requires Dynamics [My Copy] Sci. Signal., Vol. 2, No. 81. (28 July 2009), pe44. by Roger P. Alexander, Philip M. Kim, Thierry Emonet, Mark B. Gerstein posted by 3 people carlk jhyang Borelli
	Model-Based Clustering for Image Segmentation and Large Datasets via Sampling [My Copy] Journal of Classification, Vol. 21, No. 2. (1 September 2004), pp. 231-253. by Ron Wehrens, Lutgarde M. C. Buydens, Chris Fraley, Adrian E. Raftery posted by 1 person carlk
	Systems biology: Untangling the protein web [My Copy] Nature, Vol. 460, No. 7253. (15 July 2009), pp. 415-418. by Nathan Blow posted by 16 people Orengo Group Journal Picks robertrentzsch pekrau apocapoc psique leemond31 colmryan reyez carlk guhjy saket tmmurali dswan dullhunk renatomilani agonzale
	GIF-DB, a WWW database on gene interactions involved in Drosophila melanogaster development. [My Copy] Nucleic acids research, Vol. 25, No. 1. (1 January 1997), pp. 67-71. by B. Jacq, F. Horn, F. Janody, et al.N. Gompel, O. Serralbo, E. Mohr, C. Leroy, B. Bellon, L. Fasano, P. Laurenti, L. Röder posted by 1 person carlk
	Sequence patches on MAPK surfaces define protein-protein interactions. [My Copy] Genome biology, Vol. 10, No. 6. (5 June 2009) by Gary L. Johnson, Shawn M. Gomez posted by 2 people carlk higueruelo
	Visual and statistical comparison of metagenomes [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1849-1855. by Suparna Mitra, Bernhard Klar, Daniel H. Huson posted by 18 people Julien_Fayolle carlk polivares inesdesantiago taylor73 Orengo Group Journal Picks ollieredfernwork nuin Mycology stajich iSEEM sriesenfeld idoerg guhjy chrisamiller jmeppley neils druvus
	A comprehensive multi-local-world model for complex networks [My Copy] Physics Letters A, Vol. 373, No. 18-19. (20 April 2009), pp. 1601-1605. by Zhengping Fan, Guanrong Chen, Yunong Zhang posted by 1 person carlk
	Model-Based Hierarchical Clustering [My Copy] In In Proc. 16th Conf. Uncertainty in Artificial Intelligence (2000), pp. 599-608. by Shivakumar Vaithyanathan, Byron Dom posted by 1 person carlk
	Modulated modularity clustering as an exploratory tool for functional genomic inference. [My Copy] PLoS genetics, Vol. 5, No. 5. (8 May 2009), e1000479. by Eric A. Stone, Julien F. Ayroles posted by 6 people carlk rdiaz Morgan Lab-KSU theodorejmorgan roys tmmurali
	From Rapid Place Learning to Behavioral Performance: A Key Role for the Intermediate Hippocampus [My Copy] PLoS Biology, Vol. 7, No. 4. (1 April 2009), e89. by Tobias Bast, Iain A. Wilson, Menno P. Witter, Richard G. Morris posted by 2 people sen_cheng carlk
	A Computational Framework for Ultrastructural Mapping of Neural Circuitry [My Copy] PLoS Biology, Vol. 7, No. 3. (1 March 2009), e74. by James R. Anderson, Bryan W. Jones, Jia-Hui Yang, et al.Marguerite V. Shaw, Carl B. Watt, Pavel Koshevoy, Joel Spaltenstein, Elizabeth Jurrus, Kannan Uv, Ross T. Whitaker, David Mastronarde, Tolga Tasdizen, Robert E. Marc posted by 1 person carlk
	Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6477-6482. by Joel F. Moxley, Michael C. Jewett, Maciek R. Antoniewicz, et al.Silas G. Villas-Boas, Hal Alper, Robert T. Wheeler, Lily Tong, Alan G. Hinnebusch, Trey Ideker, Jens Nielsen, Gregory Stephanopoulos posted by 2 people schwartzjmc carlk
	Cycles through specified vertices of a graph [My Copy] Combinatorica, Vol. 1, No. 2. (1 June 1981), pp. 117-140. by J. Bondy, L. Lovász posted by 1 person carlk
	Modularity and community detection in bipartite networks [My Copy] (5 Nov 2007) by Michael J. Barber posted by 2 people carlk kubyaddi
	Module identification in bipartite and directed networks. [My Copy] Physical review. E, Statistical, nonlinear, and soft matter physics, Vol. 76, No. 3 Pt 2. (September 2007) by R. Guimerà, M. Sales-Pardo, L. A. Amaral posted by 2 people carlk kubyaddi
	The modularity of pollination networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 50. (11 December 2007), pp. 19891-19896. by Jens M. Olesen, Jordi Bascompte, Yoko L. Dupont, Pedro Jordano posted by 2 people carlk kubyaddi
	FAST: Fourier transform based algorithms for significance testing of ungapped multiple alignments. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 4. (15 February 2008), pp. 577-578. by N. Nagarajan, U. Keich posted by 1 person carlk
	Dissecting trait heterogeneity: a comparison of three clustering methods applied to genotypic data. [My Copy] BMC bioinformatics, Vol. 7 (2006) by T. A. Thornton-Wells, J. H. Moore, J. L. Haines posted by 2 people carlk daforerog
	Complex molecular assemblies at hand via interactive simulations. [My Copy] Journal of computational chemistry (7 April 2009) by Olivier Delalande, Nicolas Férey, Gilles Grasseau, Marc Baaden posted by 1 person carlk
	Metabolic Flux Correlations, Genetic Interactions, and Disease [My Copy] Journal of Computational Biology, Vol. 16, No. 2. (2009), pp. 291-302. by Balaji Veeramani, Joel S. Bader posted by 1 person carlk
	Non-separating induced cycles in graphs [My Copy] Journal of Combinatorial Theory, Series B, Vol. 31, No. 2. (October 1981), pp. 199-224. by C. Thomassen, B. Toft posted by 1 person carlk
	A Complex-based Reconstruction of the Saccharomyces cerevisiae Interactome [My Copy] Mol Cell Proteomics, Vol. 8, No. 6. (1 June 2009), pp. 1361-1381. by Haidong Wang, Boyko Kakaradov, Sean R. Collins, et al.Lena Karotki, Dorothea Fiedler, Michael Shales, Kevan M. Shokat, Tobias C. Walther, Nevan J. Krogan, Daphne Koller posted by 3 people carlk ptrobajo anf
	Network Features of the Mammalian Circadian Clock [My Copy] PLoS Biol, Vol. 7, No. 3. (10 March 2009), e1000052. by Julie E. Baggs, Tom S. Price, Luciano Ditacchio, Satchidananda Panda, Garret A. Fitzgerald, John B. Hogenesch posted by 5 people newgene carlk sherdim kieran101 biomcgary
	The next influenza pandemic: can it be predicted? [My Copy] JAMA : the journal of the American Medical Association, Vol. 297, No. 18. (9 May 2007), pp. 2025-2027. by Jeffery K. Taubenberger, David M. Morens, Anthony S. Fauci posted by 2 people Amazoness carlk
	The origin and virulence of the 1918 "Spanish" influenza virus. [My Copy] Proceedings of the American Philosophical Society, Vol. 150, No. 1. (March 2006), pp. 86-112. by J. K. Taubenberger posted by 1 person carlk
	Discovery and characterization of the 1918 pandemic influenza virus in historical context. [My Copy] Antiviral therapy, Vol. 12, No. 4 Pt B. (2007), pp. 581-591. by J. K. Taubenberger, J. V. Hultin, D. M. Morens posted by 1 person carlk
	Homologous recombination is very rare or absent in human influenza A virus. [My Copy] Journal of virology, Vol. 82, No. 10. (May 2008), pp. 4807-4811. by M. F. Boni, Y. Zhou, J. K. Taubenberger, E. C. Holmes posted by 1 person carlk
	Multiple reassortment events in the evolutionary history of H1N1 influenza A virus since 1918. [My Copy] PLoS pathogens, Vol. 4, No. 2. (15 February 2008) by M. I. Nelson, C. Viboud, L. Simonsen, et al.R. T. Bennett, S. B. Griesemer, K. St George, J. Taylor, D. J. Spiro, N. A. Sengamalay, E. Ghedin, J. K. Taubenberger, E. C. Holmes posted by 1 person carlk
	The origin of the 1918 pandemic influenza virus: a continuing enigma [My Copy] J Gen Virol, Vol. 84, No. 9. (1 September 2003), pp. 2285-2292. by Ann H. Reid, Jeffery K. Taubenberger posted by 2 people zchen75 carlk
	Pathology of human influenza revisited. [My Copy] Vaccine, Vol. 26 Suppl 4 (12 September 2008) by T. Kuiken, J. K. Taubenberger posted by 1 person carlk
	Wings, Horns, and Butterfly Eyespots: How Do Complex Traits Evolve? [My Copy] PLoS Biology, Vol. 7, No. 2. (1 February 2009), e37. by Antónia Monteiro, Ondrej Podlaha posted by 8 people carlk maximilianh biomcgary provero stevanspringer skumagai idoerg jjray
	On Sufficient Degree Conditions for a Graph to be $k$-linked [My Copy] Comb. Probab. Comput., Vol. 15, No. 5. (2006), pp. 685-694. by Ken I. Kawarabayashi, Alexandr Kostochka, Gexin Yu posted by 1 person carlk
	Causal Modelling and Brain Connectivity in Functional Magnetic Resonance Imaging [My Copy] PLoS Biol, Vol. 7, No. 2. (17 February 2009), e1000033. by Karl Friston posted by 8 people qluo nishiokov carlk mmwoodman wei_tang aarriaga Borelli rdiaz
	Structural Polymorphism of 441-Residue Tau at Single Residue Resolution [My Copy] PLoS Biol, Vol. 7, No. 2. (17 February 2009), e1000034. by Marco D. Mukrasch, Stefan Bibow, Jegannath Korukottu, et al.Sadasivam Jeganathan, Jacek Biernat, Christian Griesinger, Eckhard Mandelkow, Markus Zweckstetter posted by 5 people saxstau robfsouza kintoki carlk ForestAngstrom
	Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. [My Copy] Nature methods, Vol. 6, No. 1. (January 2009), pp. 47-54. by N. Simonis, J. F. Rual, A. R. Carvunis, et al.M. Tasan, I. Lemmens, T. Hirozane-Kishikawa, T. Hao, J. M. Sahalie, K. Venkatesan, F. Gebreab, S. Cevik, N. Klitgord, C. Fan, P. Braun, N. Li, N. Ayivi-Guedehoussou, E. Dann, N. Bertin, D. Szeto, A. Dricot, M. A. Yildirim, C. Lin, A. S. de Smet, H. L. Kao, C. Simon, A. Smolyar, J. S. Ahn, M. Tewari, M. Boxem, S. Milstein, H. Yu, M. Dreze, J. Vandenhaute, K. C. Gunsalus, M. E. Cusick, D. E. Hill, J. Tavernier, F. P. Roth, M. Vidal posted by 2 people carlk guhjy
	Reverse engineering molecular regulatory networks from microarray data with qp-graphs. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 2. (February 2009), pp. 213-227. by Robert Castelo, Alberto Roverato posted by 2 people carlk guhjy
	Learning signaling network structures with sparsely distributed data. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 2. (February 2009), pp. 201-212. by K. Sachs, S. Itani, J. Carlisle, G. P. Nolan, D. Pe'er, D. A. Lauffenburger posted by 4 people carlk mstumpf frohike brianb
	Subgraph connectivity numbers of a graph [My Copy] Theory and Applications of Graphs (1978), pp. 371-383. by David Matula posted by 1 person carlk
	Ramsey theory for graph connectivity [My Copy] Journal of Graph Theory, Vol. 7, No. 1. (1983), pp. 95-103. by David W. Matula posted by 2 people wiedenhoeft carlk
	An Analysis of Some Graph Theoretical Cluster Techniques [My Copy] J. ACM, Vol. 17, No. 4. (1970), pp. 571-588. by Gary J. Augustson, Jack Minker posted by 1 person carlk
	Portraits of Complex Networks [My Copy] (28 Feb 2008) by J. P. Bagrow, E. M. Bollt, J. D. Skufca, D. ben-Avraham posted by 3 people saket jaspervoskuilen carlk
	Inference of structure in subdivided populations at low levels of genetic differentiation--the correlated allele frequencies model revisited. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 19. (1 October 2008), pp. 2222-2228. by G. Guillot posted by 3 people carlk druvus renewang
	Literature-curated protein interaction datasets [My Copy] Nature Methods, Vol. 6, No. 1. (30 December 2008), pp. 39-46. by Michael E. Cusick, Haiyuan Yu, Alex Smolyar, et al.Kavitha Venkatesan, Anne-Ruxandra Carvunis, Nicolas Simonis, Jean-François Rual, Heather Borick, Pascal Braun, Matija Dreze, Jean Vandenhaute, Mary Galli, Junshi Yazaki, David E. Hill, Joseph R. Ecker, Frederick P. Roth, Marc Vidal posted by 17 people aceol fgibson allysonlister carlk aramesh2 ocs reyez kshameer neils daforerog lesikv sjcockell dullhunk icq242500260 guhjy zwang hmk
	Finding friends and enemies in an enemies-only network: A graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions [My Copy] Genome Research, Vol. 18, No. 12. (December 2008), pp. 1991-2004. by Yan Qi, Yasir Suhail, Yu-Yi Lin, Jef D. Boeke, Joel S. Bader posted by 7 people ajbattle dakelley colmryan carlk amonika benjaminsb guhjy
	Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations [My Copy] BMC Bioinformatics, Vol. 9 (16 December 2008), 539. by Jukka, Jing Tang posted by 2 people carlk jmeppley
	Protein localization studies in the age of ?Omics? [My Copy] Current Opinion in Chemical Biology, Vol. 9, No. 1. (February 2005), pp. 82-87. by N. Orourke, T. Meyer, G. Chandy posted by 1 person carlk
	Applications of fluorescence microscopy to single bacterial cells [My Copy] Research in Microbiology, Vol. 158, No. 3. (April 2007), pp. 187-194. by P. Meyer, J. Dworkin posted by 1 person carlk
	Reverse engineering the genotype\|[ndash]\|phenotype map with natural genetic variation [My Copy] Nature, Vol. 456, No. 7223. (10 December 2008), pp. 738-744. by Matthew V. Rockman posted by 17 people gdb carlk Keywan TRHvidsten jfr roys Roswell Cancer Crosstalk Zephyrus mjoach sg45653 natstreet druvus sriesenfeld lp2 pkonings stringertheory djkt
	An experimentally derived confidence score for binary protein-protein interactions [My Copy] Nat Meth, Vol. 6, No. 1. (07 December 2008), pp. 91-97. by Pascal Braun, Murat Tasan, Matija Dreze, et al.Miriam Barrios-Rodiles, Irma Lemmens, Haiyuan Yu, Julie M. Sahalie, Ryan R. Murray, Luba Roncari, Anne-Sophie de Smet, Kavitha Venkatesan, Jean-Francois Rual, Jean Vandenhaute, Michael E. Cusick, Tony Pawson, David E. Hill, Jan Tavernier, Jeffrey L. Wrana, Frederick P. Roth, Marc Vidal posted by 8 people aceol lawraga anf carlk ocs zwang guhjy sjcockell
	De novo fragment assembly with short mate-paired reads: Does the read length matter? [My Copy] Genome Research, Vol. 19, No. 2. (3 February 2009), pp. 336-346. by Mark J. Chaisson, Dumitru Brinza, Pavel A. Pevzner posted by 19 people n00c carlk APRegier jandot jonilaserson natstreet dakelley jessopher orzenil AaronDarling sphsmith jasontsai nmohelli jbhiatt druvus hpaces GustavoLacerda Mycology stajich
	metaTIGER: a metabolic evolution resource. [My Copy] Nucleic acids research (25 October 2008) by John W W. Whitaker, Ivica Letunic, Glenn A A. McConkey, David R R. Westhead posted by 3 people guhjy barriot carlk
	The Shapley value of phylogenetic trees. [My Copy] Journal of mathematical biology, Vol. 56, No. 4. (April 2008), pp. 479-497. by C. J. Haake, A. Kashiwada, F. E. Su posted by 1 person carlk
	A Low Dimensional Description of Globally Coupled Heterogeneous Neural Networks of Excitatory and Inhibitory Neurons [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (14 November 2008), e1000219. by Roxana A. Stefanescu, Viktor K. Jirsa posted by 4 people mmwoodman markoffkin fbaroni carlk
	A Hierarchy of Time-Scales and the Brain [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (14 November 2008), e1000209. by Stefan J. Kiebel, Jean Daunizeau, Karl J. Friston posted by 15 people flieder mmwoodman fbaroni bbuchsbaum rawphi markoffkin Borelli algorithmic fbarcelo svbcrypto nishiokov j-ito carlk ocs DNAcombo
	Inferring Pathway Activity toward Precise Disease Classification [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000217. by Eunjung Lee, Han-Yu Chuang, Jong-Won Kim, Trey Ideker, Doheon Lee posted by 14 people rschulz isimpson yaredo frohike ipark-kaist jfr aviad_work ajbattle zufar carlk renatomilani dragonrez tmmurali ptrobajo
	Multiscale methods for macromolecular simulations [My Copy] Current Opinion in Structural Biology, Vol. 18, No. 5. (October 2008), pp. 630-640. by P. Sherwood, B. Brooks, M. Sansom posted by 8 people jonathancooper xavierprat flbarroso carlk aqeel choonpeng McCammon jmccammon