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	Principles of docking: An overview of search algorithms and a guide to scoring functions. [My Copy] Proteins, Vol. 47, No. 4. (1 June 2002), pp. 409-443. by Inbal Halperin, Buyong Ma, Haim Wolfson, Ruth Nussinov posted by 30 people rabio ucbcjbm flbarroso csrocha Structural Biology Group TorVergata oteri timg dgruiz cantupaz apaydin bicko chad_davis yongzhao ttjoseph nickolay ima sangeetha dgront blackbart gane5h mmuecke kazemi bpagano massivemayhem cjeans Bioinformatics TSRI_MGL insilicodrug Evangelia nigham
	Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941. by Philip M. Kim, Long J. Lu, Yu Xia, Mark B. Gerstein posted by 26 people ucbcjbm pablocarb mgomes rsaito MatthiasReimann cerca bicko lfriedl chad_davis Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes structural_bioinformatics kdl cdeane Pao-Yang phoenixzxl carlk paolomarcatili saket
	Analyzing Protein Interaction Networks Using Structural Information [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008) by Christina Kiel, Pedro Beltrao, Luis Serrano posted by 13 people msuarezdiez flbarroso kshameer structural_bioinformatics chad_davis Borelli bicko neils Evangelia grahamc paolomarcatili phoenixzxl zwang
	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dumpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted by 42 people aceol tomhebbron ajbattle mgomes Scis0000002 lawraga bicko saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology phoenixzxl larsjuhljensen ellakat frohike carlk ethkim
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted by 74 people rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser jbhiatt yylin mgomes BioNica idoerg pjcite swp09 kgutwin mcbla cpwardell References for 3DSim paper johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 EisenLab biomedical-nlp Microbial-Ecology Plantandetc mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM
	Interrogating protein interaction networks through structural biology [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 9. (30 April 2002), pp. 5896-5901. by Patrick Aloy, Robert B. Russell posted by 19 people beete aceol kgutwin tomhebbron bpcusack ana barry baaden bicko lfriedl chad_davis henschel ruvido cjeans tale structural_bioinformatics kdl Bioinformatics Evangelia
	The Modular Organization of Domain Structures: Insights into Protein–Protein Binding [My Copy] PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e239. by Del, Pablo Carbonell posted by 10 people bicko chad_davis choonpeng grahamc cjeans zwang niallhaslam biehl marti carlk
	Protein-protein binding is often associated with changes in protonation state [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Aaron C. Mason, Jan H. Jensen posted by 10 people flbarroso onufriev csrocha bicko sobolevnrm baker-group RamuAnandakrishnan barry structural_bioinformatics McCammon
	A comprehensive analysis of protein\|[ndash]\|protein interactions in Saccharomyces cerevisiae [My Copy] Nature, Vol. 403, No. 6770. (10 February 2000), pp. 623-627. by Peter Uetz, Loic Giot, Gerard Cagney, et al.Traci A. Mansfield, Richard S. Judson, James R. Knight, Daniel Lockshon, Vaibhav Narayan, Maithreyan Srinivasan, Pascale Pochart, Alia Qureshi-Emili, Ying Li, Brian Godwin, Diana Conover, Theodore Kalbfleisch, Govindan Vijayadamodar, Meijia Yang, Mark Johnston, Stanley Fields, Jonathan M. Rothberg posted by 22 people aceol mtaschuk nzm mgomes lawraga semin dragonrez bicko shivaram lfriedl chad_davis j3xucite dyermd timflutre ruvido gcalda grahamc laughcry kdl hplatero csanford carlk
	Docking and scoring protein complexes: CAPRI 3rd Edition [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Marc F. Lensink, Raúl Méndez, Shoshana J. Wodak posted by 11 people mgomes flbarroso structural_bioinformatics csrocha bicko ruvido cjeans carlescorbi yalexeev middledomain timg
	Global landscape of protein complexes in the yeast Saccharomyces cerevisiae [My Copy] Nature, Vol. 440, No. 7084. (22 March 2006), pp. 637-643. by Nevan J. Krogan, Gerard Cagney, Haiyuan Yu, et al.Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P. Tikuisis, Thanuja Punna, JosÃ© M. PeregrÃn-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D. Robinson, Alberto Paccanaro, James E. Bray, Anthony Sheung, Bryan Beattie, Dawn P. Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M. Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R. Collins, Shamanta Chandran, Robin Haw, Jennifer J. Rilstone, Kiran Gandi, Natalie J. Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy H. Y. Lam, Gareth Butland, Amin M. Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S. Weissman, C. James Ingles, Timothy R. Hughes, John Parkinson, Mark Gerstein, Shoshana J. Wodak, Andrew Emili, Jack F. Greenblatt posted by 36 people aceol mpotamias Paccanaro Lab paccanarolab ajbattle mgomes jxl bicko cerca jiny Borelli lfriedl chad_davis balajis marcius tardigrade nirfriedman balabu j3xucite nickluscombe koller raiyar cjeans nicoleq kdl EBI-regulation BioinfoCIPF SGU-CIPF Evangelia csaveanu frohike carlk hplatero chasmand mapplab ethkim
	Improved side-chain modeling for protein-protein docking. [My Copy] Protein Sci, Vol. 14, No. 5. (May 2005), pp. 1328-1339. by C. Wang, O. Schueler-Furman, D. Baker posted by 15 people dgront csrocha barry aqeel jwm bicko yongzhao blackbart bluvsh1 hmk selrac structural_bioinformatics Bioinformatics TSRI_MGL Evangelia
	A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications. [My Copy] Protein Sci, Vol. 13, No. 4. (April 2004), pp. 1043-1055. by O. Keskin, C. J. Tsai, H. Wolfson, R. Nussinov posted by 9 people flbarroso marti thomaskelder baaden bicko chad_davis nickolay henschel ladab
	Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 10. (13 May 2003), pp. 5772-5777. by B. Ma, T. Elkayam, H. Wolfson, R. Nussinov posted by 13 people tbinbal dkoveal mdimmic barry bicko lyongu nickolay choonpeng cjeans carlescorbi structural_bioinformatics Bioinformatics ladab
	Scoring residue conservation. [My Copy] Proteins, Vol. 48, No. 2. (1 August 2002), pp. 227-241. by W. S. Valdar posted by 10 people dfdong barry pansapiens bicko sriram_s cjeans sobolevnrm structural_bioinformatics Bioinformatics marti
	D<FONT SIZE='-2'>OCKGROUND</FONT> system of databases for protein recognition studies: Unbound structures for docking [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Ying Gao, Dominique Douguet, Andrey Tovchigrechko, Ilya A. Vakser posted by 6 people flbarroso marti bicko chad_davis RamuAnandakrishnan timg
	Can we rationally design promiscuous drugs? [My Copy] Current Opinion in Structural Biology, Vol. 16, No. 1. (24 February 2006), pp. 127-136. by A. Hopkins, J. Mason, J. Overington posted by 11 people pablocarb pauldobson ubcg08l BragilMassoud apaydin kuhn bicko yongzhao TSRI_MGL ramensky aheilbut
	Comparative protein modelling by satisfaction of spatial restraints. [My Copy] Journal of molecular biology, Vol. 234, No. 3. (5 December 1993), pp. 779-815. by A. Sali, T. L. Blundell posted by 17 people bmduggan pjcite newton1234 viktor21614 mijam dimka vavi bicko chad_davis ttjoseph skhadar dgront rabio massivemayhem medic0747 sebk granujilla
	Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. [My Copy] Nature, Vol. 415, No. 6868. (10 January 2002), pp. 180-183. by Yuen Ho, Albrecht Gruhler, Adrian Heilbut, et al.Gary D. Bader, Lynda Moore, Sally-Lin L. Adams, Anna Millar, Paul Taylor, Keiryn Bennett, Kelly Boutilier, Lingyun Yang, Cheryl Wolting, Ian Donaldson, Søren Schandorff, Juanita Shewnarane, Mai Vo, Joanne Taggart, Marilyn Goudreault, Brenda Muskat, Cris Alfarano, Danielle Dewar, Zhen Lin, Katerina Michalickova, Andrew R. Willems, Holly Sassi, Peter A. Nielsen, Karina J. Rasmussen, Jens R. Andersen, Lene E. Johansen, Lykke H. Hansen, Hans Jespersen, Alexandre Podtelejnikov, Eva Nielsen, Janne Crawford, Vibeke Poulsen, Birgitte D. Sørensen, Jesper Matthiesen, Ronald C. Hendrickson, Frank Gleeson, Tony Pawson, Michael F. Moran, Daniel Durocher, Matthias Mann, Christopher W. Hogue, Daniel Figeys, Mike Tyers posted by 17 people lpfernandes SarahW lawraga semin okarsligil bicko shivaram lfriedl chad_davis lyongu gcalda raiyar helenamistry kdl Bioinformatics steinmetzlab iris_2001
	MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading. [My Copy] Proteins, Vol. 49, No. 3. (15 November 2002), pp. 350-364. by L. Lu, H. Lu, J. Skolnick posted by 12 people ana bicko chad_davis marcius sangeetha ruvido structural_bioinformatics Bioinformatics insilicodrug BioinfoCIPF SGU-CIPF kgutwin
	Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features [My Copy] Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637. by Wolfgang Kabsch, Christian Sander posted by 34 people dfdong barmak7282 Vadikus j3xucite scampos TLVincent maria_hauser pablocarb rpetrenko carlosjavierna mijam wqia007 dsmueller niallhaslam saunders jwm sebk Diego_Prada pjcite kaarsinogen lna chad_davis wouterboomsma penka ffranca dgront choonpeng rabio gisle medic0747 martainn chgjb mschofie marti
	Correlated sequence-signatures as markers of protein-protein interaction. [My Copy] J Mol Biol, Vol. 311, No. 4. (24 August 2001), pp. 681-692. by E. Sprinzak, H. Margalit posted by 11 people behindtherabbit bicko chad_davis maryee dyermd grahamc cjeans lilith wilbur Rhys phoenixzxl
	ProtorP: A Protein-Protein Interaction Analysis Server [My Copy] Bioinformatics (11 November 2008), btn584. by Christopher Reynolds, David Damerell, Susan Jones posted by 9 people idoerg bicko barry chad_davis behindtherabbit neils structural_bioinformatics kshameer hugowill
	Protein-protein interactions: a review of protein dimer structures. [My Copy] Prog Biophys Mol Biol, Vol. 63, No. 1. (1995), pp. 31-65. by S. Jones, J. M. Thornton posted by 10 people viktor21614 bicko barry chad_davis joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	Progress in Modeling of Protein Structures and Interactions [My Copy] Science, Vol. 310, No. 5748. (28 October 2005), pp. 638-642. by Ora Schueler-Furman, Chu Wang, Phil Bradley, Kira Misura, David Baker posted by 22 people krapnik rabio ucbcjbm paddydu flbarroso thaliana jwm vavi bicko KyuhoLee marcius eweaver tny nickolay dgront rsantana mirzazadeh insectopalo BioinfoCIPF SGU-CIPF barry structural_bioinformatics
	3D complex: a structural classification of protein complexes. [My Copy] PLoS computational biology, Vol. 2, No. 11. (17 November 2006) by Emmanuel D. Levy, Jose B. Pereira-Leal, Cyrus Chothia, Sarah A. Teichmann posted by 5 people flbarroso bicko chad_davis Einat structural_bioinformatics
	Estimating the size of the human interactome [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 19. (13 May 2008), pp. 6959-6964. by Michael P. H. Stumpf, Thomas Thorne, Eric de Silva, et al.Ronald Stewart, Hyeong J. An, Michael Lappe, Carsten Wiuf posted by 25 people aelef thegoose2 bicko C. elegans / WormBase tharris zwang chrissp100 sanchezbuelna guhjy phoenixzxl tmmurali neils paolomarcatili mjoach xingxu Ema cabbagesofdoom balicea marck friendpine brianb roys Evangelia dragonrez bpcusack
	Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs. [My Copy] Genome research, Vol. 14, No. 6. (June 2004), pp. 1107-1118. by Haiyuan Yu, Nicholas M. Luscombe, Hao Xin X. Lu, et al.Xiaowei Zhu, Yu Xia, Jing-Dong D. Han, Nicolas Bertin, Sambath Chung, Marc Vidal, Mark Gerstein posted by 14 people kiekyon rsaito thegoose2 robfsouza carlk C. elegans / WormBase tharris bicko dragonrez chad_davis balajis koller cjeans cerca
	The many faces of protein-protein interactions: A compendium of interface geometry. [My Copy] PLoS computational biology, Vol. 2, No. 9. (29 September 2006), e124. by Wan Kyu K. Kim, Andreas Henschel, Christof Winter, Michael Schroeder posted by 13 people winterschlaefer zdai raik bicko chad_davis marcius choonpeng BioinfoCIPF SGU-CIPF Evangelia wilbur allmensch marck
	Identification of transient hub proteins and the possible structural basis for their multiple interactions. [My Copy] Protein science : a publication of the Protein Society, Vol. 17, No. 1. (1 January 2008), pp. 72-78. by Miho Higurashi, Takashi Ishida, Kengo Kinoshita posted by 6 people somak bicko chad_davis balicea allmensch marti
	IntAct--open source resource for molecular interaction data. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (12 January 2007), pp. D561-565. by S. Kerrien, Y. Alam-Faruque, B. Aranda, et al.I. Bancarz, A. Bridge, C. Derow, E. Dimmer, M. Feuermann, A. Friedrichsen, R. Huntley, C. Kohler, J. Khadake, C. Leroy, A. Liban, C. Lieftink, L. Montecchi-Palazzi, S. Orchard, J. Risse, K. Robbe, B. Roechert, D. Thorneycroft, Y. Zhang, R. Apweiler, H. Hermjakob posted by 15 people dullhunk jperkins chica robert85 mbehbah1 diamantis guhjy chad_davis joergkurtwegner lpfernandes Molecular-Modelling Drug-Design Cheminformatics carlk bicko
	Protein families and their evolution-a structural perspective. [My Copy] Annu Rev Biochem, Vol. 74 (2005), pp. 867-900. by C. A. Orengo, J. M. Thornton posted by 26 people dfdong ucbcjbm flbarroso kumar_physics yuslinaz ssgong ana barry tjimenez jwm chad_davis Einat Schmidtc marcius sriram_s ezotenko redelings medic0747 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF nigham sim82
	Systematic Discovery of New Recognition Peptides Mediating Protein Interaction Networks. [My Copy] PLoS Biol, Vol. 3, No. 12. (15 November 2005) by Victor Neduva, Rune Linding, Isabelle Su-Angrand, et al.Alexander Stark, Federico de D. Masi, Toby J J. Gibson, Joe Lewis, Luis Serrano, Robert B B. Russell posted by 12 people rklancer okarsligil bicko Ayest xwbcn drastic ezotenko grahamc Bioinformatics Evangelia oelemento chad_davis
	Statistical analysis and prediction of protein-protein interfaces [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 60, No. 3. (19 May 2005), pp. 353-366. by Andrew J. Bordner, Ruben Abagyan posted by 10 people boris_aguilar barry bicko lyongu ameetsoni cjeans structural_bioinformatics Bioinformatics Evangelia marti
	Comparative assessment of large-scale data sets of protein-protein interactions. [My Copy] Nature, Vol. 417, No. 6887. (23 May 2002), pp. 399-403. by Christian von Mering, Roland Krause, Berend Snel, et al.Michael Cornell, Stephen G. Oliver, Stanley Fields, Peer Bork posted by 32 people aceol nzm lawraga semin camster barry dragonrez bicko lfriedl chad_davis alexg j3xucite bundschu yeastyboy ruvido raiyar grahamc iris_2001 cmor shu dbk-lab structural_bioinformatics kdl Bioinformatics generif_paper Evangelia shikin Pao-Yang GeneGo carlk cerca ethkim
	Intramolecular surface contacts contain information about protein-protein interface regions. [My Copy] Bioinformatics (9 June 2006) by Sjoerd J J. de Vries, Alexandre M J J M. Bonvin posted by 3 people flbarroso bicko choonpeng
	3did: interacting protein domains of known three-dimensional structure. [My Copy] Nucleic acids research, Vol. 33, No. Database issue. (1 January 2005) by Amelie Stein, Robert B. Russell, Patrick Aloy posted by 5 people baaden bicko chad_davis grottenolm kintoki
	Docking protein domains in contact space [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (21 June 2006), 310. by Stefano Lise, Alice Walker-Taylor, David T. Jones posted by 5 people vavi bicko chad_davis choonpeng martainn
	CATH--a hierarchic classification of protein domain structures. [My Copy] Structure (London, England : 1993), Vol. 5, No. 8. (15 August 1997), pp. 1093-1108. by C. A. Orengo, A. D. Michie, S. Jones, D. T. Jones, M. B. Swindells, J. M. Thornton posted by 19 people ucbcjbm flbarroso kumar_physics semin sebk tjimenez dimka jwm chad_davis Einat caporaso structural_bioinformatics Radiation_Damage Stressosome biomedical-nlp massivemayhem sim82 jteyra gulkur
	Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Andrew J. Bordner, Andrey A. Gorin posted by 7 people somak bicko robfsouza chad_davis guhjy neils phoenixzxl
	PRISM: protein interactions by structural matching. [My Copy] Nucleic acids research, Vol. 33, No. Web Server issue. (1 July 2005) by Utkan Ogmen, Ozlem Keskin, A. Selim Aytuna, Ruth Nussinov, Attila Gursoy posted by 5 people chad_davis apaydin bicko j3xucite henschel
	A decade of fragment-based drug design: strategic advances and lessons learned [My Copy] Nat Rev Drug Discov, Vol. 6, No. 3. (09 March 2007), pp. 211-219. by Philip J. Hajduk, Jonathan Greer posted by 8 people ubcg08l jerome Fragment Based Drug Discovery pslee dgruiz bicko massivemayhem jerome_ucsf_slb
	Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome. [My Copy] Genome Res, Vol. 13, No. 6A. (June 2003), pp. 1146-1154. by L. Lu, A. K. Arakaki, H. Lu, J. Skolnick posted by 7 people bicko mdimmic lfriedl chad_davis ruvido cjeans kdl
	Cataloging the relationships between proteins: a review of interaction databases. [My Copy] Mol Biotechnol, Vol. 34, No. 1. (September 2006), pp. 69-93. by C. Rohl, Y. Price, T. B. Fischer, M. Paczkowski, M. F. Zettel, J. Tsai posted by 3 people flbarroso bicko chad_davis
	Development of unified statistical potentials describing protein-protein interactions. [My Copy] Biophys J, Vol. 84, No. 3. (March 2003), pp. 1895-1901. by H. Lu, L. Lu, J. Skolnick posted by 9 people kaarsinogen bicko mdimmic chad_davis cjeans selrac iris_2001 wilbur kgutwin
	Deciphering Protein–Protein Interactions. Part I. Experimental Techniques and Databases [My Copy] PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e42. by Benjamin A. Shoemaker, Anna R. Panchenko posted by 9 people guhjy aalibes bicko jfr chad_davis cjeans iris_2001 lpfernandes groepl
	iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 3. (1 February 2005), pp. 410-412. by Robert D. Finn, Mhairi Marshall, Alex Bateman posted by 11 people kiekyon kshameer mdimmic barry chad_davis choonpeng massivemayhem antonkratz structural_bioinformatics Bioinformatics kintoki
	Principles of protein-protein interactions [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 1. (9 January 1996), pp. 13-20. by S. Jones, J. M. Thornton posted by 9 people dfdong mgomes sergiun joseolucha boris_aguilar bicko chad_davis Evangelia iris_2001
	HADDOCK: A Protein−Protein Docking Approach Based on Biochemical or Biophysical Information [My Copy] Journal of the American Chemical Society, Vol. 125, No. 7. (1 February 2003), pp. 1731-1737. by Cyril Dominguez, Rolf Boelens, Alexandre M. J. J. Bonvin posted by 11 people bmduggan chad_davis laurabailey A_Coletta_Thesis betainverse dgruiz bicko bluvsh1 gloria ruvido yalexeev
	Andante: reducing side-chain rotamer search space during comparative modeling using environment-specific substitution probabilities. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 9. (1 May 2007), pp. 1099-1105. by Richard E. Smith, Simon C. Lovell, David F. Burke, Rinaldo W. Montalvao, Tom L. Blundell posted by 4 people bicko semin jwm carlk
	Localization of protein-binding sites within families of proteins. [My Copy] Protein Sci, Vol. 14, No. 9. (September 2005), pp. 2350-2360. by D. Korkin, F. P. Davis, A. Sali posted by 9 people barry tjimenez bicko marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF wilbur
	Genomic-scale prioritization of drug targets: the TDR Targets database [My Copy] Nature Reviews Drug Discovery, Vol. 7, No. 11. (17 October 2008), pp. 900-907. by Fernán Agüero, Bissan Al-Lazikani, Martin Aslett, et al.Matthew Berriman, Frederick S. Buckner, Robert K. Campbell, Santiago Carmona, Ian M. Carruthers, Edith A. W. Chan, Feng Chen, Gregory J. Crowther, Maria A. Doyle, Christiane Hertz-Fowler, Andrew L. Hopkins, Gregg Mcallister, Solomon Nwaka, John P. Overington, Arnab Pain, Gaia V. Paolini, Ursula Pieper, Stuart A. Ralph, Aaron Riechers, David S. Roos, Andrej Sali, Dhanasekaran Shanmugam, Takashi Suzuki, Wesley C. Van Voorhis, Christophe L. M. J. Verlinde posted by 6 people bicko ubcg08l sschurer richardbickerton guhjy tmmurali
	InterPreTS: protein interaction prediction through tertiary structure. [My Copy] Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 161-162. by P. Aloy, R. B. Russell posted by 7 people kgutwin baaden bicko chad_davis henschel ruvido Pao-Yang
	Global mapping of pharmacological space [My Copy] Nature Biotechnology, Vol. 24, No. 7. (13 July 2006), pp. 805-815. by Gaia V. Paolini, Richard H. B. Shapland, Willem P. van Hoorn, Jonathan S. Mason, Andrew L. Hopkins posted by 14 people bertelsen sameersoi superpyrin richardbickerton ramensky Yanno BragilMassoud guhjy kuhn bicko caporaso allmensch biomedical-nlp jerome_ucsf_slb
	The Relationship between the Flexibility of Proteins and their Conformational States on Forming Protein-Protein Complexes with an Application to Protein-Protein Docking [My Copy] Journal of Molecular Biology, Vol. 347, No. 5. (15 April 2005), pp. 1077-1101. by Graham R. Smith, Michael Sternberg, Paul A. Bates posted by 10 people ana barry aqeel bicko yongzhao ttjoseph structural_bioinformatics Bioinformatics TSRI_MGL jteyra
	DAPID: a 3D-domain annotated protein-protein interaction database. [My Copy] Genome informatics. International Conference on Genome Informatics, Vol. 17, No. 2. (2006), pp. 206-215. by Y. C. Chen, H. C. Chen, J. M. Yang posted by 2 people bicko chad_davis
	BIND: the Biomolecular Interaction Network Database. [My Copy] Nucleic acids research, Vol. 31, No. 1. (1 January 2003), pp. 248-250. by Gary D. Bader, Doron Betel, Christopher W. Hogue posted by 12 people bertelsen web03 viktor21614 okarsligil lfriedl chad_davis dullhunk gurkanbebek kdl Bioinformatics dragonrez bicko
	Electrostatic rate enhancement and transient complex of protein-protein association [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 71, No. 1. (11 October 2008), pp. 320-335. by Ramzi Alsallaq, Huan-Xiang Zhou posted by 6 people structural_bioinformatics McCammon barry bicko sobolevnrm baker-group
	Inference of macromolecular assemblies from crystalline state. [My Copy] Journal of molecular biology, Vol. 372, No. 3. (21 September 2007), pp. 774-797. by Evgeny Krissinel, Kim Henrick posted by 4 people marti rico bicko chad_davis
	Computational Alanine Scanning of Protein-Protein Interfaces [My Copy] Sci. STKE, Vol. 2004, No. 219. (10 February 2004), pl2. by Tanja Kortemme, David E. Kim, David Baker posted by 15 people chemrahul82 onufriev pablocarb bicko barry sangeetha blackbart joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics insilicodrug skoddet
	Protein-protein interactions: hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: implications for docking. [My Copy] J Mol Biol, Vol. 344, No. 3. (26 November 2004), pp. 781-795. by X. Li, O. Keskin, B. Ma, R. Nussinov, J. Liang posted by 13 people barry baaden bicko nickolay j3xucite bluvsh1 xz grahamc structural_bioinformatics Bioinformatics Evangelia ladab paolomarcatili
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