huiminC's Top Recommendations

These recommendations were last updated about an hour ago.

	Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles [My Copy] Proceedings of the National Academy of Sciences of the United States of America In Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550. by Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha, et al.Sayan Mukherjee, Benjamin L. Ebert, Michael A. Gillette, Amanda Paulovich, Scott L. Pomeroy, Todd R. Golub, Eric S. Lander, Jill P. Mesirov posted by 54 people jmstat mysickova buyske bertelsen Jporci gbloeb miskar giovenko greg dolchan pattersonee mhamidi jperkins zufar ptrobajo antonkratz yaredo tmmurali VGreiff daforerog paszkows ipark-kaist ajbattle jessopher askrajiv idonaldson ihpark chrisamiller dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet Bioinformatics BioinfoCIPF GeschwindLab Indigene heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH
	Network-based classification of breast cancer metastasis. [My Copy] Molecular systems biology, Vol. 3 (16 October 2007) by Han-Yu Y. Chuang, Eunjung Lee, Yu-Tsueng T. Liu, Doheon Lee, Trey Ideker posted by 35 people gowtham yaredo Complex Networks fesousa ipark-kaist aviad_work AbnerCYH zufar provero jmuhlich Zephyrus Jarman Lab ggallone giovenko winterschlaefer isimpson ihpark bertelsen jfr kengg frohike mikaelhuss cjeans zwang cerami abhattac Bioinformatics shikin oelemento roys GeneGo ptrobajo dap5087 saman_vp verdicchio
	Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists [My Copy] Nucl. Acids Res., Vol. 37, No. 1. (1 January 2009), pp. 1-13. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted by 51 people icecrown natstreet provero psique darian chasmand hzoltan ipark-kaist giovenko lwaldron jcaddy antonkratz Zephyrus shikin yaredo tonamswish ddunbar robfsouza Keywan daforerog ptrobajo rdiaz bertelsen Bioinformatics - CRUK Stew inesdesantiago heliopais ConklinLab AlexanderPico aviad_work ekotelnikova frohike aramesh2 jfr zufar ilyashl dolchan paszkows lptolik thomaskelder AbnerCYH neils tmmurali ealloza barriot druvus renatomilani pengchy phoenixzxl guhjy sjcockell
	Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing [My Copy] Journal of the Royal Statistical Society. Series B (Methodological), Vol. 57, No. 1. (1995), pp. 289-300. by Yoav Benjamini, Yosef Hochberg posted by 44 people arider1 Biostatistics ctacmo abrentnall jperkins CulCog jlorent zufar bertelsen Zephyrus fisherp michaelbarton dakelley lwaldron polivares brianb ucbcjbm jfr xingxu emptyhb renewang Yanno sdvillal druvus natstreet czeller guhjy RMGraze oannes vplagnol frohike grahamc shigepong ccr axelon ugengma amsantos Bioinformatics Regulomics_UCHSC rschulz dragonrez isimpson vertikalist BTS-PT-AS-CS
	A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5891. (15 August 2008), pp. 956-960. by M. Sultan, M. H. Schulz, H. Richard, et al.A. Magen, A. Klingenhoff, M. Scherf, M. Seifert, T. Borodina, A. Soldatov, D. Parkhomchuk, D. Schmidt, S. O'Keeffe, S. Haas, M. Vingron, H. Lehrach, M. L. Yaspo posted by 31 people hzoltan zufar eszczurek n00c dna inesdesantiago ilyashl TRHvidsten poschm bertelsen ivanek guhjy wutongbin jfr raistrick BenosLab gracio xingxu psique oelemento Ema reyez caseybrown kjglennie dh0000 GeeSharpMinor balicea djkt ArtemPankin Khavkin's lab zwang
	Analyzing gene expression data in terms of gene sets: methodological issues [My Copy] Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 980-987. by Jelle J. Goeman, Peter Buhlmann posted by 23 people hzoltan zufar srp33 bertelsen jperkins ptrobajo VGreiff tonamswish ipark-kaist aramesh2 ydhwang shikin raiyar SIMR bioinformatics ghattem jfr ealloza shigepong BioinfoCIPF heliopais guhjy diging_data BTS-PT-AS-CS
	A Quick Guide to Organizing Computational Biology Projects [My Copy] PLoS Comput Biol In PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000424. by William S. Noble posted by 86 people aprasad okapi abhishek_tiwari agomez songpku shikin kemamy2 chvlyl freesci dfdong dutilh leliavski dgront paulymer FAB-lab rvosa installe burak annakcroft brianb nuin skembel pekrau Sergey_gerbek mordiano remoteFuture Yanno Pedro Martinez EvoDevo lab Barcelona aaltenburger marekrud guhjy dolchan frohike operon Orengo Group Journal Picks CorinYeats artaban421 antonkratz tomhebbron maren bayesian daveGerrard JoeBanks jcaddy somak bertelsen ptrobajo nperoni daforerog mmwoodman charris5 GustavoLacerda pmendes fgibson rdiaz Zephyrus heliopais franklu310 lmichan silberbauer leemond31 jlangdon robfsouza Bioinformatics - CRUK Stew pmung reyez kshameer djkt pawelsobko jjray dswan apaydin renatomilani VGreiff cabbagesofdoom ccsbs wei_tang fenghezi BergmanLab cisevol structural_bioinformatics McCammon barry sdaehne druvus
	Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma [My Copy] Proceedings of the National Academy of Sciences (6 December 2007), 0710052104. by Rameen Beroukhim, Gad Getz, Leia Nghiemphu, et al.Jordi Barretina, Teli Hsueh, David Linhart, Igor Vivanco, Jeffrey C. Lee, Julie H. Huang, Sethu Alexander, Jinyan Du, Tweeny Kau, Roman K. Thomas, Kinjal Shah, Horacio Soto, Sven Perner, John Prensner, Ralph M. Debiasi, Francesca Demichelis, Charlie Hatton, Mark A. Rubin, Levi A. Garraway, Stan F. Nelson, Linda Liau, Mischel, Tim F. Cloughesy, Matthew Meyerson, Todd A. Golub, Eric S. Lander, Ingo K. Mellinghoff, William R. Sellers posted by 12 people frohike giovenko wimufi rdiaz srp33 jfr oelemento cerami loopback007 Cancer_Stem_Cells Glioma Reviews chrisamiller
	Use and misuse of the gene ontology annotations [My Copy] Nature Reviews Genetics, Vol. 9, No. 7. (13 May 2008), pp. 509-515. by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici posted by 45 people lisa1 singhsh epigenetics davidmam Thaverkamp druvus dullhunk 8_01 suizan dolchan Borelli Zephyrus VGreiff klo thomaskelder ilyashl phoenixzxl MarcoAlvarez isakemal bertelsen daforerog jfr djkt guhjy aheilbut mariakmejia cmzmasek A_Olympia logics of knowledge realzhang carlk roys gjuggler fpattyn RamuAnandakrishnan ptrobajo giovenko cabbagesofdoom tmmurali renatomilani capitall marck rvosa FAB-lab bpcusack
	An integrated genomic analysis of human glioblastoma multiforme. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5897. (26 September 2008), pp. 1807-1812. by D. Williams Parsons, Siân Jones, Xiaosong Zhang, et al.Jimmy Cheng-Ho C. Lin, Rebecca J. Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, I-Mei M. Siu, Gary L. Gallia, Alessandro Olivi, Roger McLendon, B. Ahmed Rasheed, Stephen Keir, Tatiana Nikolskaya, Yuri Nikolsky, Dana A. Busam, Hanna Tekleab, Luis A. Diaz, James Hartigan, Doug R. Smith, Robert L. Strausberg, Suely Kazue Nagahashi K. Marie, Sueli Mieko Oba M. Shinjo, Hai Yan, Gregory J. Riggins, Darell D. Bigner, Rachel Karchin, Nick Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E. Velculescu, Kenneth W. Kinzler posted by 18 people VGreiff stubrown Zephyrus zufar dolchan frohike caseybrown wimufi jfr srp33 renatomilani brianb GeneGo shikin aheilbut Roswell Cancer Crosstalk songpku giovenko
	CpG Island Mapping by Epigenome Prediction [My Copy] PLoS Comput Biol, Vol. 3, No. 6. (8 June 2007), e110. by Christoph Bock, Jörn Walter, Martina Paulsen, Thomas Lengauer posted by 12 people hagechouchin443 iris42 aprasad suizifish bpcusack kaarsinogen sebastien_vigneau zwang oelemento fpattyn rschulz inesdesantiago
	A modular approach for integrative analysis of large-scale gene-expression and drug-response data [My Copy] Nature Biotechnology In Nat Biotech, Vol. 26, No. 5. (08 May 2008), pp. 531-539. by Zoltan Kutalik, Jacques S. Beckmann, Sven Bergmann posted by 14 people frohike mysickova meanerelk zufar TRHvidsten vingron mingzhi guhjy aviad_work jfr stringertheory tmmurali oelemento ptrobajo
	Next-generation DNA sequencing [My Copy] Nature Biotechnology In Nat Biotech, Vol. 26, No. 10. (09 October 2008), pp. 1135-1145. by Jay Shendure, Hanlee Ji posted by 53 people tux2000 JamesBarger darian burak Jporci daforerog dchughes hzoltan cthachuk giovenko heliopais seb1 installe niallhaslam Vincent_Rouilly rschulz fishtank bluto Annab katholt jmcq michaelbarton n00c jfr dna nzm farhat idoerg mhz mmartin jbhiatt yupu Bioinformatics behindtherabbit guhjy Pascalichouchou frohike dakelley ptrobajo zwang Roswell Cancer Crosstalk Zephyrus psique natstreet druvus nuin alexknight reyez dbk Oxford Virology wsjames pengchy GeeSharpMinor
	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by Michael Ashburner, Catherine A. Ball, Judith A. Blake, et al.David Botstein, Heather Butler, J. Michael Cherry, Allan P. Davis, Kara Dolinski, Selina S. Dwight, Janan T. Eppig, Midori A. Harris, David P. Hill, Laurie Issel-Tarver, Andrew Kasarskis, Suzanna Lewis, John C. Matese, Joel E. Richardson, Martin Ringwald, Gerald M. Rubin, Gavin Sherlock posted by 87 people josepe krapnik 8_01 suizan sanchezbuelna Jporci artaban421 mtaschuk niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick BTS-PT-AS-CS vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele kdl Bioinformatics EisenLab T_lab biomedical-nlp CitoJam pablomendes carlk marck dgront roys rvosa FAB-lab fongenae
	arrayQualityMetrics--a bioconductor package for quality assessment of microarray data [My Copy] Bioinformatics, Vol. 25, No. 3. (1 February 2009), pp. 415-416. by Audrey Kauffmann, Robert Gentleman, Wolfgang Huber posted by 18 people jperkins VGreiff Zephyrus daforerog shikin lwaldron jfr ptrobajo rdiaz siebert bertelsen pkonings Bioinformatics dswan renatomilani rschulz nuin guhjy
	A review of feature selection techniques in bioinformatics [My Copy] Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2507-2517. by Yvan Saeys, Inaki Inza, Pedro Larranaga posted by 31 people corgan orzenil Shibby zufar stharward jjrodriguez briordan phoenixzxl ipark-kaist prerna svozil bertelsen VGreiff rsantana druvus jfr giovenko guhjy chad_davis aviad_work frohike grahamc shigepong lp2 cabbagezs ryanraaum Bioinformatics vietanh0 eacosta aaalxy srp33
	Mapping and sequencing of structural variation from eight human genomes [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 56-64. by Jeffrey M. Kidd, Gregory M. Cooper, William F. Donahue, et al.Hillary S. Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, N. Alice Yamada, Peter Tsang, Tera L. Newman, Eray Tuzun, Ze Cheng, Heather M. Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A. Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin McKernan, Lin Chen, Maika Malig, Joshua D. Smith, Joshua M. Korn, Steven A. McCarroll, David A. Altshuler, Daniel A. Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A. Nickerson, James C. Mullikin, Richard K. Wilson, Laurakay Bruhn, Maynard V. Olson, Rajinder Kaul, Douglas R. Smith, Evan E. Eichler posted by 38 people hzoltan n00c daed fstrozzi sameersoi jonilaserson ilyashl rdiaz dakelley xingxu alweber APRegier Annab smiddha daforerog vkwn frohike waszak matthewsuderman jfr hpaces Ema bpb dchughes djkt balicea shikin GeneGo psique kintoki kaniko aprasad vplagnol maximilianh chrisamiller guhjy skoch3 Koch_Lab
	Integrative genome-wide analysis reveals a robust genomic glioblastoma signature associated with copy number driving changes in gene expression [My Copy] Genes, Chromosomes and Cancer, Vol. 48, No. 1. (2009), pp. 55-68. by Marie de Tayrac, Amandine Etcheverry, Marc Aubry, et al.Stephan Saïkali, Abderrahmane Hamlat, Veronique Quillien, André Le Treut, Marie-Dominique Galibert, Jean Mosser posted by 8 people burak oelemento jfr chrisamiller Roswell Cancer Crosstalk Zephyrus rdiaz srp33
	Statistical significance for genomewide studies [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 16. (5 August 2003), pp. 9440-9445. by John D. Storey, Robert Tibshirani posted by 37 people jperkins arider1 ilyashl icecrown bertelsen jbhiatt aviad_work biomcgary daforerog treangen druvus vertikalist maximilianh BTS-PT-AS-CS diging_data egreenfest guhjy textoris RMGraze jen_drake hggr frohike schuylrp grahamc incovoma kynn sancho 7ofAnn nicholso Bioinformatics shikin wirawan BrianTomasik roys sconlan zhouyu bpcusack
	Switching from Repression to Activation: MicroRNAs Can Up-Regulate Translation [My Copy] Science, Vol. 318, No. 5858. (21 December 2007), pp. 1931-1934. by Shobha Vasudevan, Yingchun Tong, Joan A. Steitz posted by 20 people danaiancu hcoller daforerog valeriehilgers pengchy tmmurali jfr dayjm balicea dchughes sebastien_vigneau microRNA maximilianh heliopais oelemento wsjames Oxford Virology delenca maralena mtagaya
	Mapping and quantifying mammalian transcriptomes by RNA-Seq [My Copy] Nature Methods In Nat Meth, Vol. 5, No. 7. (30 May 2008), pp. 621-628. by Ali Mortazavi, Brian A. Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold posted by 48 people ongenetics cajunsushi davidmam manduca cthachuk hzoltan jwfoley heliopais juokcho aktas debasis bertelsen idonaldson darian stubrown Bioinformatics dswan ewilban1 mtagaya woodson8 burak jonilaserson inesdesantiago ThomasDOtto n00c GustavoG SIMR bioinformatics ghattem vplagnol druvus cfvillalta vmsr poschm dandaman shikin jmcq rschulz lp2 tmcphillips jfr myourshaw megraw GeeSharpMinor caseybrown xingxu guhjy shurjo gdb
	Microarray-based gene set analysis: a comparison of current methods [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 502. by Sarah Song, Michael Black posted by 29 people bsamal bertelsen giovenko dipenps holecm lwaldron jfr ptrobajo ekotelnikova zufar buyske guhjy heliopais fhalbrit lptolik balicea daforerog Roswell Cancer Crosstalk Zephyrus irinamohorianu dswan shikin nuin hersh006 behindtherabbit colinDotAIBN druvus barriot GeeSharpMinor
	Relative impact of nucleotide and copy number variation on gene expression phenotypes. [My Copy] Science (New York, N.Y.), Vol. 315, No. 5813. (9 February 2007), pp. 848-853. by Barbara E. Stranger, Matthew S. Forrest, Mark Dunning, et al.Catherine E. Ingle, Claude Beazley, Natalie Thorne, Richard Redon, Christine P. Bird, Anna de Grassi, Charles Lee, Chris Tyler-Smith, Nigel Carter, Stephen W. Scherer, Simon Tavaré, Panagiotis Deloukas, Matthew E. Hurles, Emmanouil T. Dermitzakis posted by 38 people biovils lp2 daveGerrard sameersoi timhubbard Roswell Cancer Crosstalk Zephyrus ajbattle jonilaserson ilyashl emptyhb buyske zufar koller Visiting Position waszak daed psique jo_davies srp33 guhjy jfr dpollard balicea rdiaz qfwills djkt vplagnol shigepong jlangdon xingxu Bioinformatics EisenLab cisevol cis-regulatory-evolution caseybrown frohike jandot
	The properties of high-dimensional data spaces: implications for exploring gene and protein expression data [My Copy] Nat Rev Cancer, Vol. 8, No. 1. (01 January 2008), pp. 37-49. by Robert Clarke, Habtom W. Ressom, Antai Wang, et al.Jianhua Xuan, Minetta C. Liu, Edmund A. Gehan, Yue Wang posted by 19 people Zephyrus aviad_work ipark-kaist isimpson Scis0000002 baizhang bertelsen ptrobajo jfr guhjy tmmurali dwf frohike cjeans nedwards Bioinformatics shikin blackm0k brianb
	From bytes to bedside: data integration and computational biology for translational cancer research. [My Copy] PLoS computational biology, Vol. 3, No. 2. (23 February 2007), e12. by Jomol P. Mathew, Barry S. Taylor, Gary D. Bader, et al.Saiju Pyarajan, Marco Antoniotti, Arul M. Chinnaiyan, Chris Sander, Steven J. Burakoff, Bud Mishra posted by 9 people nicklynch dolchan dansullivanblk guhjy jfr kynn frohike oelemento srp33
	Metagene projection for cross-platform, cross-species characterization of global transcriptional states [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 14. (3 April 2007), pp. 5959-5964. by Pablo Tamayo, Daniel Scanfeld, Benjamin L. Ebert, Michael A. Gillette, Charles W. M. Roberts, Jill P. Mesirov posted by 12 people askrajiv ptrobajo BTS-PT-AS-CS vertikalist akastrin guhjy jfr oelemento aviad_work ghattem dragonrez nuin
	Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains [My Copy] Genome Research, Vol. 19, No. 1. (January 2009), pp. 24-32. by Suresh Cuddapah, Raja Jothi, Dustin E. Schones, Tae-Young Roh, Kairong Cui, Keji Zhao posted by 15 people aprickett suizifish gdb fenghezi clearbluespring rschulz xingxu CTCF sebastien_vigneau cassj caseybrown polivares inesdesantiago oelemento maximilianh
	The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies. [My Copy] BMC bioinformatics, Vol. 9 Suppl 9, No. Suppl 9. (2008), S10. by Leming Shi, Wendell D. Jones, Roderick V. Jensen, et al.Stephen C. Harris, Roger G. Perkins, Federico M. Goodsaid, Lei Guo, Lisa J. Croner, Cecilie Boysen, Hong Fang, Feng Qian, Shashi Amur, Wenjun Bao, Catalin C. Barbacioru, Vincent Bertholet, Xiaoxi Megan M. Cao, Tzu-Ming M. Chu, Patrick J. Collins, Xiao-Hui H. Fan, Felix W. Frueh, James C. Fuscoe, Xu Guo, Jing Han, Damir Herman, Huixiao Hong, Ernest S. Kawasaki, Quan-Zhen Z. Li, Yuling Luo, Yunqing Ma, Nan Mei, Ron L. Peterson, Raj K. Puri, Richard Shippy, Zhenqiang Su, Yongming Andrew A. Sun, Hongmei Sun, Brett Thorn, Yaron Turpaz, Charles Wang, Sue Jane J. Wang, Janet A. Warrington, James C. Willey, Jie Wu, Qian Xie, Liang Zhang, Lu Zhang, Sheng Zhong, Russell D. Wolfinger, Weida Tong posted by 23 people bertelsen frohike bsamal maximilianh GustavoG mayercd Zephyrus daforerog oliviawi zufar bandrewfox lwaldron mdharsee shikin rdiaz jfr ugengma Bioinformatics dswan guhjy GeeSharpMinor ptrobajo Jonesy
	Alternative isoform regulation in human tissue transcriptomes [My Copy] Nature In Nature, Vol. 456, No. 7221. (02 November 2008), pp. 470-476. by Eric T. Wang, Rickard Sandberg, Shujun Luo, et al.Irina Khrebtukova, Lu Zhang, Christine Mayr, Stephen F. Kingsmore, Gary P. Schroth, Christopher B. Burge posted by 25 people cajunsushi hzoltan ajbattle stubrown jonilaserson tonamswish frohike fenghezi heliopais zxmon21 tanglingfung xingxu felsani wimufi Roswell Cancer Crosstalk Zephyrus gjuggler bertelsen eluinka gfliustu vplagnol kieran101 emptyhb rschulz abizar
	Testing significance relative to a fold-change threshold is a TREAT. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 765-771. by Davis J. McCarthy, Gordon K. Smyth posted by 14 people shikin Bioinformatics jfr VGreiff lwaldron rschulz kmdaily rdiaz heliopais dswan bertelsen guhjy renatomilani paszkows
	Core Signaling Pathways in Human Pancreatic Cancers Revealed by Global Genomic Analyses [My Copy] Science (4 September 2008), 1164368. by Sian Jones, Xiaosong Zhang, D. Williams Parsons, et al.Jimmy C. Lin, Rebecca J. Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, Hirohiko Kamiyama, Antonio Jimeno, Seung-Mo Hong, Baojin Fu, Ming-Tseh Lin, Eric S. Calhoun, Mihoko Kamiyama, Kimberly Walter, Tatiana Nikolskaya, Yuri Nikolsky, James Hartigan, Douglas R. Smith, Manuel Hidalgo, Steven D. Leach, Alison P. Klein, Elizabeth M. Jaffee, Michael Goggins, Anirban Maitra, Christine Iacobuzio-Donahue, James R. Eshleman, Scott E. Kern, Ralph H. Hruban, Rachel Karchin, Nickolas Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E. Velculescu, Kenneth W. Kinzler posted by 22 people zufar jbhiatt dolchan wimufi jo_davies srp33 jfr whh98 roys cmzmasek thomaskelder fongkoh ConklinLab AlexanderPico SaraNasser renatomilani brianb GeneGo shikin Roswell Cancer Crosstalk songpku giovenko
	Repeatability of published microarray gene expression analyses. [My Copy] Nature genetics, Vol. 41, No. 2. (28 February 2009), pp. 149-155. by John P. Ioannidis, David B. Allison, Catherine A. Ball, et al.Issa Coulibaly, Xiangqin Cui, Aedín C. Culhane, Mario Falchi, Cesare Furlanello, Laurence Game, Giuseppe Jurman, Jon Mangion, Tapan Mehta, Michael Nitzberg, Grier P. Page, Enrico Petretto, Vera van Noort posted by 23 people hzoltan Roswell Cancer Crosstalk heliopais ericrpaquet guhjy greg frohike TRHvidsten giovenko jfr rdiaz zufar ptrobajo floatingpoint felsani nuin daforerog cabbagesofdoom dswan Zephyrus inesdesantiago djkt paszkows
	Global variation in copy number in the human genome [My Copy] Nature In Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454. by Richard Redon, Shumpei Ishikawa, Karen R. Fitch, et al.Lars Feuk, George H. Perry, T. Daniel Andrews, Heike Fiegler, Michael H. Shapero, Andrew R. Carson, Wenwei Chen, Eun K. Cho, Stephanie Dallaire, Jennifer L. Freeman, Juan R. Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R. MacDonald, Christian R. Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J. Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F. Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P. Carter, Hiroyuki Aburatani, Charles Lee, Keith W. Jones, Stephen W. Scherer, Matthew E. Hurles posted by 52 people shigepong shikin n00c sameersoi lp2 ilyashl ajbattle darian jonilaserson jrvalcourt turnersd guhjy daforerog noushin Glires ivanek waszak jo_davies parkinson's disease references psique bpb jfr balajis pradiptaray dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ramensky ccr azazello dbgrant colinveal xingxu Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB srp33 Ema daed
	Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5' UTR as in the 3' UTR. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 23. (5 June 2007), pp. 9667-9672. by J. Robin Lytle, Therese A. Yario, Joan A. Steitz posted by 15 people daforerog thegoose2 Glires bertelsen caizhiqiang C. elegans / WormBase tharris guhjy tardigrade andersbj microRNA heliopais oelemento maralena dchughes
	Combinatorial patterns of histone acetylations and methylations in the human genome [My Copy] Nature Genetics, Vol. 40, No. 7. (15 June 2008), pp. 897-903. by Zhibin Wang, Chongzhi Zang, Jeffrey A. Rosenfeld, et al.Dustin E. Schones, Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Weiqun Peng, Michael Q. Zhang, Keji Zhao posted by 19 people rsaito akakak hagechouchin443 RyuOgawa suizifish tonamswish Epigenetics sebastien_vigneau gderwin oelemento raylim coela jernst bpcusack kambiz caseybrown djkt kengg inesdesantiago
	Microarray data analysis: from disarray to consolidation and consensus. [My Copy] Nature reviews. Genetics, Vol. 7, No. 1. (01 January 2006), pp. 55-65. by David B. Allison, Xiangqin Cui, Grier P. Page, Mahyar Sabripour posted by 35 people stharward antonkratz ipark-kaist svozil bertelsen Bioinformatics - CRUK Stew daforerog winterschlaefer verdicchio guhjy barry textoris jfr Ayest balicea sterovetta lhonigberg acidwizard ronaldozhou vpschulz rmk schuylrp Garamonfok debasis GeeSharpMinor dimatura structural_bioinformatics Bioinformatics heliopais shikin minostro giovenko jo_davies aviad_work
	Genome-wide Prediction of Mammalian Enhancers Based on Analysis of Transcription-Factor Binding Affinity [My Copy] Cell, Vol. 124, No. 1. (13 January 2006), pp. 47-59. by O. Hallikas, K. Palin, N. Sinjushina, et al.R. Rautiainen, J. Partanen, E. Ukkonen, J. Taipale posted by 22 people absterga xingxu cisstem Terkko kaarsinogen tuck brant xwbcn dchughes nickluscombe olympos cabbagezs karfunkel Bioinformatics EisenLab G4ID EBI-regulation Genetics-of-Gambling maximilianh heliopais oelemento emptyhb
	Key issues in conducting a meta-analysis of gene expression microarray datasets. [My Copy] PLoS medicine, Vol. 5, No. 9. (30 September 2008), e184. by Adaikalavan Ramasamy, Adrian Mondry, Chris C. Holmes, Douglas G. Altman posted by 13 people zufar greg frohike lwaldron daforerog Roswell Cancer Crosstalk Zephyrus shikin druvus guhjy aviad_work jfr ptrobajo
	Widespread Monoallelic Expression on Human Autosomes [My Copy] Science, Vol. 318, No. 5853. (16 November 2007), pp. 1136-1140. by Alexander Gimelbrant, John N. Hutchinson, Benjamin R. Thompson, Andrew Chess posted by 11 people clearbluespring Zephyrus djkt vplagnol giovanni qwermish oelemento caseybrown stoffreg vmsr bpcusack
	Linear models and empirical bayes methods for assessing differential expression in microarray experiments. [My Copy] Statistical applications in genetics and molecular biology, Vol. 3, No. 1. (2004) by Gordon K. Smyth posted by 21 people schwalb shikin bertelsen jperkins zoex_99 ipark-kaist lwaldron paszkows isimpson Bioinformatics - CRUK Stew ihpark giovenko RMGraze maryee mayercd justescaped ugengma heliopais guhjy talponer
	How to infer gene networks from expression profiles [My Copy] Mol Syst Biol, Vol. 3 (13 February 2007) by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo posted by 45 people jmstat sarikamehra frohike Jporci beete tonamswish zufar nicholasflann icq242500260 guhjy Zephyrus antonkratz phoenixzxl bertelsen isimpson daforerog poirel agonzale roys Neeperando APRegier rdiaz klo Borelli Jarman Lab ggallone ptrobajo druvus cswinburne jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet EBI-regulation Plantandetc heliopais mariakmejia tmmurali
	Variations in DNA elucidate molecular networks that cause disease. [My Copy] Nature, Vol. 452, No. 7186. (27 March 2008), pp. 429-435. by Yanqing Chen, Jun Zhu, Pek Yee Y. Lum, et al.Xia Yang, Shirly Pinto, Douglas J. MacNeil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K. Sieberts, Amy Leonardson, Lawrence W. Castellini, Susanna Wang, Marie-France F. Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A. Drake, Aldons J. Lusis, Eric E. Schadt posted by 25 people mnishimu Zephyrus biomcgary daforerog roys druvus 4th_floor_JC nicklynch semrich brianb jbsaltz djkt raiyar lp2 jo_davies shikin caseybrown GeneGo ptrobajo guhjy echinotrix natstreet sanchezbuelna jfr chrisamiller
	A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 32. (7 August 2007), pp. 13086-13091. by J. K. Lee, D. M. Havaleshko, H. Cho, et al.J. N. Weinstein, E. P. Kaldjian, J. Karpovich, A. Grimshaw, D. Theodorescu posted by 4 people nuin ptrobajo jfr oelemento
	Gene silencing in cancer by histone H3 lysine 27 trimethylation independent of promoter DNA methylation [My Copy] Nature Genetics, Vol. 40, No. 6. (18 May 2008), pp. 741-750. by Yutaka Kondo, Lanlan Shen, Alfred S. Cheng, et al.Saira Ahmed, Yanis Boumber, Chantale Charo, Tadanori Yamochi, Takeshi Urano, Koichi Furukawa, Bernard Kwabi-Addo, David L. Gold, Yoshitaka Sekido, Tim H. Huang, Jean-Pierre J. Issa posted by 5 people suizifish oelemento misonneh djkt inesdesantiago
	Integrative microarray analysis of pathways dysregulated in metastatic prostate cancer. [My Copy] Cancer Res, Vol. 67, No. 21. (1 November 2007), pp. 10296-10303. by S. R. Setlur, T. E. Royce, A. Sboner, et al.J. M. Mosquera, F. Demichelis, M. D. Hofer, K. D. Mertz, M. Gerstein, M. A. Rubin posted by 4 people shikin jfr oelemento dragonrez
	ChIP-seq accurately predicts tissue-specific activity of enhancers [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 854-858. by Axel Visel, Matthew J. Blow, Zirong Li, et al.Tao Zhang, Jennifer A. Akiyama, Amy Holt, Ingrid Plajzer-Frick, Malak Shoukry, Crystal Wright, Feng Chen, Veena Afzal, Bing Ren, Edward M. Rubin, Len A. Pennacchio posted by 26 people hzoltan tonamswish ewilban1 samanthacooper ashkelon13 isimpson gdb dnewburger jochenG bertelsen oelemento rpatward cajunsushi WanderingAengus absterga provero cassj anphony RockmanLab cis-regulatory-evolution dpollard caseybrown biomcgary xingxu idonaldson djkt
	Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites. [My Copy] Science (New York, N.Y.), Vol. 320, No. 5883. (20 June 2008), pp. 1643-1647. by Rickard Sandberg, Joel R. Neilson, Arup Sarma, Phillip A. Sharp, Christopher B. Burge posted by 19 people gbloeb bpcusack frohike danaiancu bertelsen hcoller tonamswish ivanek valeriehilgers microRNA heliopais jfr dchughes djkt lisa1 bootsy emptyhb faion daforerog
	Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data [My Copy] Nucl. Acids Res. In Nucl. Acids Res., Vol. 33, No. 20. (10 November 2005), pp. e175-e175. by Manhong Dai, Pinglang Wang, Andrew D. Boyd, et al.Georgi Kostov, Brian Athey, Edward G. Jones, William E. Bunney, Richard M. Myers, Terry P. Speed, Huda Akil, Stanley J. Watson, Fan Meng posted by 14 people rmk lwaldron giovenko pcahan1 frohike incovoma nicholso Bioinformatics heliopais Montrachet shikin GeneGo bertelsen waszak
	Genetic Progression and the Waiting Time to Cancer [My Copy] PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e225. by Niko Beerenwinkel, Tibor Antal, David Dingli, et al.Arne Traulsen, Kenneth W. Kinzler, Victor E. Velculescu, Bert Vogelstein, Martin A. Nowak posted by 4 people jfr oelemento gwenknight srp33
	The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. [My Copy] Nature biotechnology, Vol. 24, No. 9. (September 2006), pp. 1151-1161. by , L. Shi, L. H. Reid, et al.W. D. Jones, R. Shippy, J. A. Warrington, S. C. Baker, P. J. Collins, F. de Longueville, E. S. Kawasaki, K. Y. Lee, Y. Luo, Y. A. Sun, J. C. Willey, R. A. Setterquist, G. M. Fischer, W. Tong, Y. P. Dragan, D. J. Dix, F. W. Frueh, F. M. Goodsaid, D. Herman, R. V. Jensen, C. D. Johnson, E. K. Lobenhofer, R. K. Puri, U. Schrf, J. Thierry-Mieg, C. Wang, M. Wilson, P. K. Wolber, L. Zhang, S. Amur, W. Bao, C. C. Barbacioru, A. B. Lucas, V. Bertholet, C. Boysen, B. Bromley, D. Brown, A. Brunner, R. Canales, X. M. Cao, T. A. Cebula, J. J. Chen, J. Cheng, T. M. Chu, E. Chudin, J. Corson, J. C. Corton, L. J. Croner, C. Davies, T. S. Davison, G. Delenstarr, X. Deng, D. Dorris, A. C. Eklund, X. H. Fan, H. Fang, S. Fulmer-Smentek, J. C. Fuscoe, K. Gallagher, W. Ge, L. Guo, X. Guo, J. Hager, P. K. Haje, J. Han, T. Han, H. C. Harbottle, S. C. Harris, E. Hatchwell, C. A. Hauser, S. Hester, H. Hong, P. Hurban, S. A. Jackson, H. Ji, C. R. Knight, W. P. Kuo, J. E. LeClerc, S. Levy, Q. Z. Li, C. Liu, Y. Liu, M. J. Lombardi, Y. Ma, S. R. Magnuson, B. Maqsodi, T. McDaniel, N. Mei, O. Myklebost, B. Ning, N. Novoradovskaya, M. S. Orr, T. W. Osborn, A. Papallo, T. A. Patterson, R. G. Perkins, E. H. Peters, R. Peterson, K. L. Philips, P. S. Pine, L. Pusztai, F. Qian, H. Ren, M. Rosen, B. A. Rosenzweig, R. R. Samaha, M. Schena, G. P. Schroth, S. Shchegrova, D. D. Smith, F. Staedtler, Z. Su, H. Sun, Z. Szallasi, Z. Tezak, D. Thierry-Mieg, K. L. Thompson, I. Tikhonova, Y. Turpaz, B. Vallanat, C. Van, S. J. Walker, S. J. Wang, Y. Wang, R. Wolfinger, A. Wong, J. Wu, C. Xiao, Q. Xie, J. Xu, W. Yang, L. Zhang, S. Zhong, Y. Zong, W. Slikker posted by 19 people VGreiff bertelsen lwaldron daforerog rdiaz jo_davies pengchy kentsis jfr jdiggans qmwwallace cberry shigepong caseybrown giovenko shikin slevy03 guhjy vmsr
	Mapping short DNA sequencing reads and calling variants using mapping quality scores. [My Copy] Genome research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted by 43 people claire_jubin urgi seninp heliopais hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier SIMR bioinformatics ghattem jbhiatt mmartin michaelbarton BergmanLab polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat
	Models from experiments: combinatorial drug perturbations of cancer cells [My Copy] Molecular Systems Biology, Vol. 4 (02 September 2008) by Sven Nelander, Weiqing Wang, Bjorn Nilsson, et al.Qing-Bai She, Christine Pratilas, Neal Rosen, Peter Gennemark, Chris Sander posted by 7 people tjchen mingzhi jfr aheilbut ptrobajo oelemento balabu
	A systems biology approach for pathway level analysis [My Copy] Genome Research, Vol. 17, No. 10. (4 October 2007), pp. 1537-1545. by Sorin Draghici, Purvesh Khatri, Adi L. Tarca, et al.Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero posted by 25 people zufar bertelsen tonamswish gbloeb cgaugain ptrobajo pengchy tmmurali dragonrez jfr gurkanbebek grahamc shigepong zwang cabbagezs cerami xingxu Bioinformatics shikin idonaldson Pao-Yang OPIG thomaskelder heliopais AlexanderPico
	A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis [My Copy] Nature Biotechnology, Vol. 26, No. 7. (08 July 2008), pp. 779-785. by Thomas A. Down, Vardhman K. Rakyan, Daniel J. Turner, et al.Paul Flicek, Heng Li, Eugene Kulesha, Stefan Graf, Nathan Johnson, Javier Herrero, Eleni M. Tomazou, Natalie P. Thorne, Liselotte Backdahl, Marlis Herberth, Kevin L. Howe, David K. Jackson, Marcos M. Miretti, John C. Marioni, Ewan Birney, Tim J. P. Hubbard, Richard Durbin, Simon Tavare, Stephan Beck posted by 11 people fabrices druvus timhubbard KCL & UCL Bioinformatics mmartin sebastien_vigneau rschulz bpcusack slevy03 oelemento guhjy
	Discovering statistically significant pathways in expression profiling studies. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 38. (20 September 2005), pp. 13544-13549. by Lu Tian, Steven A. Greenberg, Sek Won W. Kong, Josiah Altschuler, Isaac S. Kohane, Peter J. Park posted by 15 people bertelsen zufar yaredo VGreiff daforerog ipark-kaist dragonrez maryee ealloza frohike justescaped BioinfoCIPF srp33 giovenko heliopais
	The impact of microRNAs on protein output. [My Copy] Nature, Vol. 455, No. 7209. (4 September 2008), pp. 64-71. by Daehyun Baek, Judit Villén, Chanseok Shin, Fernando D. Camargo, Steven P. Gygi, David P. Bartel posted by 27 people framancuso danaiancu fishtank gderwin pengchy valeriehilgers guhjy kmdaily martin-novak samgj microRNA heliopais askrajiv natsdorf jfr frohike giovenko mtagaya megraw djkt brianb emptyhb erel10 maralena ajaymalik caizhiqiang gdb
	Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene expression changes. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 7. (1 April 2008), pp. 889-896. by Hyunju Lee, Sek Won W. Kong, Peter J. Park posted by 10 people yina rdiaz Zephyrus jfr jcaddy ealloza barriot ptrobajo frohike srp33
	Genomic and transcriptional aberrations linked to breast cancer pathophysiologies [My Copy] Cancer Cell, Vol. 10, No. 6. (December 2006), pp. 529-541. by Koei Chin, Sandy Devries, Jane Fridlyand, et al.Paul T. Spellman, Ritu Roydasgupta, Wen-Lin Kuo, Anna Lapuk, Richard M. Neve, Zuwei Qian, Tom Ryder posted by 5 people engelhardt oelemento jfr chrisamiller frohike
	Computational epigenetics [My Copy] Bioinformatics, Vol. 24, No. 1. (1 January 2008), pp. 1-10. by Christoph Bock, Thomas Lengauer posted by 20 people operon iris42 pawelsobko SIMR bioinformatics huali suizifish mmartin sebastien_vigneau ealloza djkt frohike timflutre cjeans epigenetics cabbagezs Bioinformatics barriot Ema Thomasah guhjy
	Protein networks in disease. [My Copy] Genome research, Vol. 18, No. 4. (1 April 2008), pp. 644-652. by Trey Ideker, Roded Sharan posted by 28 people frohike shikin carlk isimpson chica saket zufar kaarsinogen giovenko guhjy balicea tmmurali Borelli jwdietrich bootsy nedwards roys mclarenv phoenixzxl brianb schuylrp jfr paolomarcatili gracio thomaskelder ptrobajo raiyar zwang
	Widespread changes in protein synthesis induced by microRNAs [My Copy] Nature, Vol. 455, No. 7209. (30 July 2008), pp. 58-63. by Matthias Selbach, Bjorn Schwanhausser, Nadine Thierfelder, Zhuo Fang, Raya Khanin, Nikolaus Rajewsky posted by 31 people frohike hryk dandaman framancuso inesdesantiago lwaldron danaiancu fishtank dswan TRHvidsten pengchy valeriehilgers druvus guhjy martin-novak cajunsushi microRNA heliopais BTS-PT-AS-CS vertikalist jfr caizhiqiang psique megraw neils j_rodriguez erel10 maralena reyez mtagaya gdb
	A fine-scale map of recombination rates and hotspots across the human genome. [My Copy] Science (New York, N.Y.), Vol. 310, No. 5746. (14 October 2005), pp. 321-324. by Simon Myers, Leonardo Bottolo, Colin Freeman, Gil McVean, Peter Donnelly posted by 10 people Garamonfok ilyashl maren jo_davies aprasad sriram_s larios djkt hms oelemento
	R/parallel - speeding up bioinformatics analysis with R [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (22 September 2008), 390. by Gonzalo Vera, Ritsert Jansen, Remo Suppi posted by 31 people humburg bsamal darian Zephyrus daveGerrard sotacam cassj walshtp dposada jfr Yanno siebert operon talponer guhjy dakelley chad_davis ptrobajo pengchy shikin robertlischke chrisamiller BergmanLab cisevol druvus renatomilani rdiaz nuin GeeSharpMinor neils jandot
	A network biology approach to prostate cancer [My Copy] Mol Syst Biol, Vol. 3 (13 February 2007) by Ayla Ergun, Carolyn A. Lawrence, Michael A. Kohanski, Timothy A. Brennan, James J. Collins posted by 9 people windman83 ptrobajo nolodie kentsis jfr ealloza mikaelhuss BioinfoCIPF oelemento
	ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. [My Copy] BMC Bioinformatics, Vol. 7 Suppl 1 (2006) by A. A. Margolin, I. Nemenman, K. Basso, et al.C. Wiggins, G. Stolovitzky, R. Dalla Favera, A. Califano posted by 19 people frohike dolchan tonamswish Neeperando akraemer APRegier verdicchio behindtherabbit kaarsinogen mbehbah1 druvus giovenko ptrobajo kentsis tmmurali jfr shigepong natstreet heliopais
	A map of human cancer signaling [My Copy] Molecular Systems Biology, Vol. 3 (18 December 2007) by Qinghua Cui, Yun Ma, Maria Jaramillo, et al.Hamza Bari, Arif Awan, Song Yang, Simo Zhang, Lixue Liu, Meng Lu, Maureen O'Connor-McCourt, Enrico O. Purisima, Edwin Wang posted by 14 people poojamaj tonamswish Roswell Cancer Crosstalk Zephyrus agomez shikin jfr tmmurali ealloza cjeans Ema renatomilani srp33 frohike
	Gene-set approach for expression pattern analysis [My Copy] Brief Bioinform, Vol. 9, No. 3. (1 May 2008), pp. 189-197. by Dougu Nam, Seon-Young Kim posted by 20 people frohike bertelsen srp33 tonamswish kemalpak shikin ipark-kaist ihpark ptrobajo guhjy seemu thomaskelder lp2 giovenko AlexanderPico heliopais tmmurali yas beete klo
	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nat Biotech, Vol. 23, No. 1. (06 January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, W. James Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted by 46 people frohike mpizbioinfo megraw Dulce farhat wowalz mhofree jasontsai heliopais pengchy daforerog yylin cambray emptyhb bryankr icases ana barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT dandaman vietanh0 ep161302 nuin Stew
	Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources [My Copy] Nature Protocols In Nat. Protocols, Vol. 4, No. 1. (18 December 2008), pp. 44-57. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted by 19 people darian rschulz jperkins tonamswish operon VGreiff jfr Bioinformatics - CRUK Stew bertelsen Sonix Bioinformatics dswan guhjy wimufi brianb idonaldson mrochman daforerog
	K-ras Mutations and Benefit from Cetuximab in Advanced Colorectal Cancer [My Copy] N Engl J Med, Vol. 359, No. 17. (23 October 2008), pp. 1757-1765. by Christos S. Karapetis, Shirin Khambata-Ford, Derek J. Jonker, et al.Chris J. O'Callaghan, Dongsheng Tu, Niall C. Tebbutt, R. John Simes, Haji Chalchal, Jeremy D. Shapiro, Sonia Robitaille, Timothy J. Price, Lois Shepherd, Heather-Jane Au, Christiane Langer, Malcolm J. Moore, John R. Zalcberg posted by 4 people morgmonster oelemento jbhiatt jfr
	Distinguishing protein-coding and noncoding genes in the human genome [My Copy] Proceedings of the National Academy of Sciences In Proceedings of the National Academy of Sciences, Vol. 104, No. 49. (4 December 2007), pp. 19428-19433. by Michele Clamp, Ben Fry, Mike Kamal, et al.Xiaohui Xie, James Cuff, Michael F. Lin, Manolis Kellis, Kerstin Lindblad-Toh, Eric S. Lander posted by 22 people bpcusack antonkratz jo_davies tmmurali rvosa balicea sebastien_vigneau giovanni neils stajich cjeans cabbagezs EisenLab FAB-lab maximilianh oelemento gjuggler slroberd Mycology renatomilani gracio Ema
	Extensions to gene set enrichment. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 3. (1 February 2007), pp. 306-313. by Zhen Jiang, Robert Gentleman posted by 15 people bertelsen ptrobajo guhjy tonamswish ipark-kaist jfr aviad_work ihpark ealloza djkt BioinfoCIPF waghsk heliopais giovenko magusina
	A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2787-2794. by Andreas Keller, Christina Backes, Andreas Gerasch, et al.Michael Kaufmann, Oliver Kohlbacher, Eckart Meese, Hans-Peter Lenhof posted by 12 people shikin bertelsen Orengo Group Journal Picks jperkins tonamswish heliopais dolchan greg zufar rdiaz ptrobajo brianb
	Significance analysis of microarrays applied to the ionizing radiation response. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 9. (24 April 2001), pp. 5116-5121. by V. G. Tusher, R. Tibshirani, G. Chu posted by 20 people jperkins ipark-kaist bertelsen daforerog marboe roys ihpark bassene frohike paszkows miguel jen_drake gpalidwor olympos ccr incovoma ugengma shikin askrajiv renatomilani
	Inferring Pathway Activity toward Precise Disease Classification [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000217. by Eunjung Lee, Han-Yu Chuang, Jong-Won Kim, Trey Ideker, Doheon Lee posted by 14 people frohike rschulz isimpson yaredo ipark-kaist jfr aviad_work ajbattle zufar carlk renatomilani dragonrez tmmurali ptrobajo
	Integration of biological networks and gene expression data using Cytoscape. [My Copy] Nature protocols, Vol. 2, No. 10. (27 September 2007), pp. 2366-2382. by Melissa S. Cline, Michael Smoot, Ethan Cerami, et al.Allan Kuchinsky, Nerius Landys, Chris Workman, Rowan Christmas, Iliana Avila-Campilo, Michael Creech, Benjamin Gross, Kristina Hanspers, Ruth Isserlin, Ryan Kelley, Sarah Killcoyne, Samad Lotia, Steven Maere, John Morris, Keiichiro Ono, Vuk Pavlovic, Alexander R. Pico, Aditya Vailaya, Peng-Liang L. Wang, Annette Adler, Bruce R. Conklin, Leroy Hood, Martin Kuiper, Chris Sander, Ilya Schmulevich, Benno Schwikowski, Guy J. Warner, Trey Ideker, Gary D. Bader posted by 22 people icecrown daveGerrard greg badi ptrobajo tonamswish daforerog bertelsen Cortel cswinburne giovenko isimpson emmackinnon yaredo Stew guhjy jfr shikin shung thomaskelder GeneGo AlexanderPico
	Biological principles of microRNA-mediated regulation: shared themes amid diversity [My Copy] Nat Rev Genet, Vol. 9, No. 11. (November 2008), pp. 831-842. by Alex S. Flynt, Eric C. Lai posted by 18 people qfwills jfr valeriehilgers microRNA database guhjy Roswell Cancer Crosstalk Zephyrus dakelley microRNA heliopais giovenko natstreet druvus Mycology stajich ealloza dchughes pengchy
	Microarray-based genomic profiling reveals novel genomic aberrations in follicular lymphoma which associate with patient survival and gene expression status [My Copy] Genes, Chromosomes and Cancer, Vol. 48, No. 1. (2009), pp. 39-54. by Carsten Schwaenen, Andreas Viardot, Hilmar Berger, et al.Thomas F. E. Barth, Stefan Bentink, Hartmut Döhner, Martina Enz, Alfred C. Feller, Martin-Leo Hansmann, Michael Hummel, Hans A. Kestler, Wolfram Klapper, Markus Kreuz, Dido Lenze, Markus Loeffler, Peter Möller, Hans-Konrad Müller-Hermelink, German Ott, Maciej Rosolowski, Andreas Rosenwald, Sandra Ruf, Reiner Siebert, Rainer Spang, Harald Stein, Lorenz Truemper, Peter Lichter, Martin Bentz, Swen Wessendorf, For posted by 2 people jfr oelemento
	Support Vector Machines and Kernels for Computational Biology [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000173. by Asa Ben-Hur, Cheng S. Ong, Sören Sonnenburg, Bernhard Schölkopf, Gunnar Rätsch posted by 36 people guhjy VGreiff tomhebbron ucbcjbm thegoose Zephyrus phoenixzxl winterschlaefer kshameer Bioinformatics svozil mmartin jfr MarcoAlvarez baker-group sobolevnrm Yanno Scis0000002 srp33 GustavoLacerda nuin rdiaz dakelley rschulz Borelli taguchi VisionLab kristina bayesian chad_davis mdstobbe tny giovenko markchen druvus GeeSharpMinor
	Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer. [My Copy] Science, Vol. 310, No. 5748. (28 October 2005), pp. 644-648. by S. A. Tomlins, D. R. Rhodes, S. Perner, et al.S. M. Dhanasekaran, R. Mehra, X. W. Sun, S. Varambally, X. Cao, J. Tchinda, R. Kuefer, C. Lee, J. E. Montie, R. B. Shah, K. J. Pienta, M. A. Rubin, A. M. Chinnaiyan posted by 9 people ipark-kaist absterga ihpark kentsis jfr tuck emb51 oelemento winterschlaefer
	Molecular subtypes of diffuse large B-cell lymphoma arise by distinct genetic pathways [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 36. (2008), pp. 13520-13525. by Georg Lenz, George W. Wright, Tolga N. C. Emre, et al.Holger Kohlhammer, Sandeep S. Dave, Eric R. Davis, Shannon Carty, Lloyd T. Lam, A. L. Shaffer, Wenming Xiao, John Powell, Andreas Rosenwald, German Ott, Hans K. Muller-Hermelink, Randy D. Gascoyne, Joseph M. Connors, Elias Campo, Elaine S. Jaffe, Jan Delabie, Erlend B. Smeland, Lisa M. Rimsza, Richard I. Fisher, Dennis D. Weisenburger, Wing C. Chan, Louis M. Staudt posted by 2 people jfr oelemento
	Integrative analysis of the cancer transcriptome. [My Copy] Nature genetics, Vol. 37 Suppl (01 June 2005), pp. S31-S37. by Daniel R. Rhodes, Arul M. Chinnaiyan posted by 12 people frohike bertelsen daforerog cswinburne aalibes textoris ealloza BioinfoCIPF shikin GeneGo waghsk srp33
	From signatures to models: understanding cancer using microarrays [My Copy] Nature Genetics, Vol. 37 Suppl (01 June 2005), pp. S38-S45. by Eran Segal, Nir Friedman, Naftali Kaminski, Aviv Regev, Daphne Koller posted by 16 people frohike bertelsen chasmand roys lwaldron cswinburne aalibes textoris troels_marstrand wnpx nirfriedman rdiaz sampath shikin GeneGo srp33
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven Salzberg posted by 44 people oannes mijam nuin jfr hzoltan cthachuk darshan fstrozzi adijr debasis bozdagd BergmanLab polivares torfinnnome n00c talponer jmcq rschulz SIMR bioinformatics ghattem operon humburg idonaldson mmartin iSEEM skembel dquest heliopais djkt GeeSharpMinor bertelsen darian Notre Dame Bioinformatics semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus
	Oncogenic pathway signatures in human cancers as a guide to targeted therapies. [My Copy] Nature, Vol. 439, No. 7074. (19 January 2006), pp. 353-357. by Andrea H. Bild, Guang Yao, Jeffrey T. Chang, et al.Quanli Wang, Anil Potti, Dawn Chasse, Mary-Beth B. Joshi, David Harpole, Johnathan M. Lancaster, Andrew Berchuck, John A. Olson, Jeffrey R. Marks, Holly K. Dressman, Mike West, Joseph R. Nevins posted by 17 people lwaldron bertelsen roys ipark-kaist zufar Yanno guhjy kentsis mfenner ajeffs tuck maryee eckart_bindewald frohike Ao_Li2007 waghsk srp33
	Bioinformatics challenges of new sequencing technology. [My Copy] Trends in genetics : TIG, Vol. 24, No. 3. (11 March 2008), pp. 142-149. by Mihai Pop, Steven L. Salzberg posted by 37 people michaelbarton Jporci cthachuk hzoltan hpaces heliopais imaginatio operon daforerog n00c ptrobajo orzenil APRegier katholt kiekyon thegoose2 xingxu floatingpoint polivares yupu treangen jmcq delenickphd giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam urgi Neeperando jfr tharris mariakmejia caseybrown yoonk druvus
	A gene expression bar code for microarray data. [My Copy] Nature methods, Vol. 4, No. 11. (30 November 2007), pp. 911-913. by Michael J. Zilliox, Rafael A. Irizarry posted by 5 people oelemento guhjy jfr akastrin ptrobajo
	Functional metagenomic profiling of nine biomes [My Copy] Nature, Vol. 452, No. 7187. (12 March 2008), pp. 629-632. by Elizabeth A. Dinsdale, Robert A. Edwards, Dana Hall, et al.Florent Angly, Mya Breitbart, Jennifer M. Brulc, Mike Furlan, Christelle Desnues, Matthew Haynes, Linlin Li, Lauren McDaniel, Mary A. Moran, Karen E. Nelson, Christina Nilsson, Robert Olson, John Paul, Beltran R. Brito, Yijun Ruan, Brandon K. Swan, Rick Stevens, David L. Valentine, Rebecca V. Thurber, Linda Wegley, Bryan A. White, Forest Rohwer posted by 24 people idoerg Thaverkamp shuzhens Savage Lab, UCLA anphony michaelbarton azazello skembel guhjy djkt neils kinestetika microbiology_nijmegen bluto oelemento alexisfjdufresne vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group jmeppley vrich jlgreen Green Lab iSEEM
	The Polycomb group protein EZH2 directly controls DNA methylation [My Copy] Nature (14 December 2005) by Emmanuelle Viré, Carmen Brenner, Rachel Deplus, et al.Loïc Blanchon, Mario Fraga, Céline Didelot, Lluis Morey, Aleyde Van Eynde, David Bernard, Jean-Marie Vanderwinden, Mathieu Bollen, Manel Esteller, Luciano Di Croce, Yvan de Launoit, François Fuks posted by 3 people oelemento joepickrell epigenetics
	Assaying the regulatory potential of mammalian conserved non-coding sequences in human cells [My Copy] Genome Biology, Vol. 9 (02 December 2008), R168. by Catia, John A. Stamatoyannopoulos posted by 11 people xingxu djkt Roswell Cancer Crosstalk Zephyrus oelemento xianjun samgj maximilianh JLab BergmanLab cisevol
	A predictive model for transcriptional control of physiology in a free living cell. [My Copy] Cell, Vol. 131, No. 7. (28 December 2007), pp. 1354-1365. by Richard Bonneau, Marc T. Facciotti, David J. Reiss, et al.Amy K. Schmid, Min Pan, Amardeep Kaur, Vesteinn Thorsson, Paul Shannon, Michael H. Johnson, J. Christopher Bare, William Longabaugh, Madhavi Vuthoori, Kenia Whitehead, Aviv Madar, Lena Suzuki, Tetsuya Mori, Dong-Eun E. Chang, Jocelyne Diruggiero, Carl H. Johnson, Leroy Hood, Nitin S. Baliga posted by 13 people hyunjin4jc ptrobajo adampah lawraga edwardmorrissey guhjy tmmurali raiyar oelemento emptyhb megraw roys Borelli
	Ultradeep Bisulfite Sequencing Analysis of DNA Methylation Patterns in Multiple Gene Promoters by 454 Sequencing [My Copy] Cancer Res, Vol. 67, No. 18. (15 September 2007), pp. 8511-8518. by Kristen H. Taylor, Robin S. Kramer, Wade J. Davis, et al.Juyuan Guo, Deiter J. Duff, Dong Xu, Charles W. Caldwell, Huidong Shi posted by 3 people oelemento natstreet epigenetics
	Geometric interpretation of gene coexpression network analysis. [My Copy] PLoS computational biology, Vol. 4, No. 8. (15 August 2008), e1000117. by Steve Horvath, Jun Dong posted by 23 people jeremymiller zufar dolchan sficklin isimpson rdiaz guhjy cswinburne jfr ptrobajo pengchy nolodie druvus aramesh2 kengg roys Ema tmmurali Borelli Totobox AbnerCYH davidchavalarias caseybrown
	RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays [My Copy] Genome Research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted by 53 people sotacam CPI UU AndersI zufar cthachuk hzoltan jwfoley heliopais debasis maren mtagaya mkiyer stubrown woodson8 jonilaserson burak Ayest ThomasDOtto SIMR bioinformatics huali n00c natstreet bandrewfox daed dandaman slevy03 pengchy felsani coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich Mycology giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda
	Probe set algorithms: is there a rational best bet? [My Copy] BMC bioinformatics, Vol. 7 (30 August 2006), 395. by Jinwook Seo, Eric P. Hoffman posted by 8 people ericrpaquet lwaldron heliopais jfr ghattem rschulz bertelsen shikin
	Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling [My Copy] Nature, Vol. 403, No. 6769. (3 February 2000), pp. 503-511. by Ash A. Alizadeh, Michael B. Eisen, R. Eric Davis, et al.Chi Ma, Izidore S. Lossos, Andreas Rosenwald, Jennifer C. Boldrick, Hajeer Sabet, Truc Tran, Xin Yu, John I. Powell, Liming Yang, Gerald E. Marti, Troy Moore, James Hudson, Lisheng Lu, David B. Lewis, Robert Tibshirani, Gavin Sherlock, Wing C. Chan, Timothy C. Greiner, Dennis D. Weisenburger, James O. Armitage, Roger Warnke, Ronald Levy, Wyndham Wilson, Michael R. Grever, John C. Byrd, David Botstein, Patrick O. Brown, Louis M. Staudt posted by 9 people kentz gstiglic oelemento ggrot bedo giovanni GeschwindLab jo_davies frohike
	Integrated detection and population-genetic analysis of SNPs and copy number variation. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1166-1174. by Steven A. McCarroll, Finny G. Kuruvilla, Joshua M. Korn, et al.Simon Cawley, James Nemesh, Alec Wysoker, Michael H. Shapero, Paul I. de Bakker, Julian B. Maller, Andrew Kirby, Amanda L. Elliott, Melissa Parkin, Earl Hubbell, Teresa Webster, Rui Mei, James Veitch, Patrick J. Collins, Robert Handsaker, Steve Lincoln, Marcia Nizzari, John Blume, Keith W. Jones, Rich Rava, Mark J. Daly, Stacey B. Gabriel, David Altshuler posted by 23 people frohike shikin vplagnol buyske turnersd sameersoi gruberjd Hans45 pdexheimer madreach waszak caseybrown rsantana Roswell Cancer Crosstalk Zephyrus psique jbsaltz Ema misonneh djkt daed rdiaz guhjy
	MicroRNA target prediction by expression analysis of host genes [My Copy] Genome Research, Vol. 19, No. 3. (16 March 2009), pp. 481-490. by Vincenzo A. Gennarino, Marco Sardiello, Raffaella Avellino, et al.Nicola Meola, Vincenza Maselli, Santosh Anand, Luisa Cutillo, Andrea Ballabio, Sandro Banfi posted by 19 people danaiancu gbloeb ptrobajo guhjy tonamswish gennarino heliopais megraw tmmurali microRNA jfr samgj valeriehilgers Roswell Cancer Crosstalk Zephyrus pengchy giovenko daforerog ealloza
	Methylation of adjacent CpG sites affects Sp1/Sp3 binding and activity in the p21(Cip1) promoter. [My Copy] Mol Cell Biol, Vol. 23, No. 12. (June 2003), pp. 4056-4065. by W. G. Zhu, K. Srinivasan, Z. Dai, et al.W. Duan, L. J. Druhan, H. Ding, L. Yee, M. A. Villalona-Calero, C. Plass, G. A. Otterson posted by 3 people suizifish oelemento beccaf22
	Human microRNAs co-silence in well-separated groups and have different predicted essentialities. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1063-1069. by Gábor Boross, Katalin Orosz, Illés J. Farkas posted by 9 people heliopais microRNA jfr samgj BenosLab shikin ealloza daforerog valeriehilgers