jaimie's Top Recommendations

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	A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae) [My Copy] Proceedings of the National Academy of Sciences of the United States of America In Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 14. (8 July 2003), pp. 8348-8353. by Olga G. Troyanskaya, Kara Dolinski, Art B. Owen, Russ B. Altman, David Botstein posted by 25 people cjm phoenixzxl ruichu bertelsen bresiva BioGeek serak dragonrez okarsligil lfriedl balajis eckart_bindewald eweaver luispedro opheliav wnpx nedwards kdl Bioinformatics Evangelia kallberg isimpson carlk srp33 frohike
	A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data [My Copy] Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453. by Ronald Jansen, Haiyuan Yu, Dov Greenbaum, et al.Yuval Kluger, Nevan J. Krogan, Sambath Chung, Andrew Emili, Michael Snyder, Jack F. Greenblatt, Mark Gerstein posted by 27 people cjm rsaito cerca hagechouchin443 aelef Robinder lfriedl balajis opheliav yuval wnpx nickluscombe ruvido raiyar massivemayhem kdang dbgrant nedwards karfunkel kdl EBI-regulation Evangelia shung phoenixzxl penpen926 carlk frohike
	Shared Peptides in Mass Spectrometry Based Protein Quantification [My Copy] In RECOMB 2'09: Proceedings of the 13th Annual International Conference on Research in Computational Molecular Biology (2009), pp. 356-371. by Banu Dost, Nuno Bandeira, Xiangqian Li, Zhouxin Shen, Steve Briggs, Vineet Bafna posted by 2 people brianb nedwards
	Detecting non-adjoining correlations with signals in DNA [My Copy] In RECOMB '98: Proceedings of the second annual international conference on Computational molecular biology (1998), pp. 2-8. by Pankaj Agarwal, Vineet Bafna posted by 1 person nedwards
	Forensic interpretation of Y-chromosomal DNA mixtures [My Copy] Forensic Science International, Vol. 152, No. 2-3. (10 September 2005), pp. 209-213. by A. Wolf, A. Caliebe, O. Junge, M. Krawczak posted by 1 person nedwards
	Forensic interpretation of haploid DNA mixtures [My Copy] International Congress Series, Vol. 1288 (April 2006), pp. 477-483. by M. Krawczak posted by 1 person nedwards
	Systematic comparison of the human saliva and plasma proteomes [My Copy] PROTEOMICS - CLINICAL APPLICATIONS, Vol. 3, No. 1. (1 January 2009), pp. 116-134. by Weihong Yan, Rolf Apweiler, Brian M. Balgley, et al.Pinmanee Boontheung, Jonathan L. Bundy, Benjamin J. Cargile, Steve Cole, Xueping Fang, Mireya Gonzalez-Begne, Timothy J. Griffin, Fred Hagen, Shen Hu, Lawrence E. Wolinsky, Cheng S. Lee, Daniel Malamud, James E. Melvin, Rajasree Menon, Michael Mueller, Renli Qiao, Nelson L. Rhodus, Joel R. Sevinsky, David States, James L. Stephenson, Shawn Than, John R. Yates, Weixia Yu, Hongwei Xie, Yongming Xie, Gilbert S. Omenn, Joseph A. Loo, David T. Wong posted by 2 people nedwards brianb
	Top-Down Identification of Protein Biomarkers in Bacteria with Unsequenced Genomes. [My Copy] Analytical chemistry, Vol. 0, No. 0. (2 November 2009) by Colin Wynne, Catherine Fenselau, Plamen A. Demirev, Nathan Edwards posted by 3 people gjuggler brianb nedwards
	Error-tolerant identification of peptides in sequence databases by peptide sequence tags. [My Copy] Analytical chemistry, Vol. 66, No. 24. (15 December 1994), pp. 4390-4399. by M. Mann, M. Wilm posted by 1 person nedwards
	Shotgun proteomics: integrating technologies to answer biological questions. [My Copy] Current opinion in molecular therapeutics, Vol. 5, No. 3. (June 2003), pp. 302-309. by W. Hayes McDonald, John R. Yates posted by 1 person nedwards
	N-Glycan Structure Annotation of Glycopeptides Using a Linearized Glycan Structure Database (GlyDB) [My Copy] Journal of Proteome Research, Vol. 6, No. 8. (1 August 2007), pp. 3162-3173. by Jian M. Ren, Tomas Rejtar, Lingyun Li, Barry L. Karger posted by 1 person nedwards
	Protein quantification across hundreds of experimental conditions [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 37. (15 September 2009), pp. 15544-15548. by Zia Khan, Joshua S. Bloom, Benjamin A. Garcia, Mona Singh, Leonid Kruglyak posted by 6 people brianb nedwards bennos tmmurali roys GeeSharpMinor
	Proteomic discovery of previously unannotated, rapidly evolving seminal fluid genes in Drosophila [My Copy] Genome Research, Vol. 19, No. 5. (May 2009), pp. 886-896. by Geoffrey D. Findlay, Michael J. MacCoss, Willie J. Swanson posted by 1 person nedwards
	Alliance of Proteomics and Genomics to Unravel the Specificities of Sahara Bacterium Deinococcus deserti [My Copy] PLoS Genet, Vol. 5, No. 3. (27 March 2009), e1000434. by Arjan de Groot, Rémi Dulermo, Philippe Ortet, et al.Laurence Blanchard, Philippe Guérin, Bernard Fernandez, Benoit Vacherie, Carole Dossat, Edmond Jolivet, Patricia Siguier, Michael Chandler, Mohamed Barakat, Alain Dedieu, Valérie Barbe, Thierry Heulin, Suzanne Sommer, Wafa Achouak, Jean Armengaud posted by 1 person nedwards
	T3-Sequencing: Targeted Characterization of the N- and C-Termini of Undigested Proteins by Mass Spectrometry [My Copy] Analytical Chemistry, Vol. 75, No. 21. (1 November 2003), pp. 5817-5824. by Detlev Suckau, Anja Resemann posted by 1 person nedwards
	Protein sequencing by mass analysis of polypeptide ladders after controlled protein hydrolysis [My Copy] Nature Biotechnology, Vol. 22, No. 10. (07 September 2004), pp. 1291-1296. by Hongying Zhong, Ying Zhang, Zhihui Wen, Liang Li posted by 1 person nedwards
	Proteomic Analysis of an Extreme Halophilic Archaeon, Halobacterium sp. NRC-1 [My Copy] Mol Cell Proteomics, Vol. 2, No. 8. (1 August 2003), pp. 506-524. by Young A. Goo, Eugene C. Yi, Nitin S. Baliga, et al.Weiguo A. Tao, Min Pan, Ruedi Aebersold, David R. Goodlett, Leroy Hood, Wailap V. Ng posted by 1 person nedwards
	Characterization of the Human Small-Ribosomal-Subunit Proteins by N-Terminal and Internal Sequencing, and Mass Spectrometry [My Copy] European Journal of Biochemistry, Vol. 239, No. 1. (1996), pp. 144-149. by Sergey N. Vladimirov, Anton V. Ivanov, Galina G. Karpova, et al.Alekxander K. Musolyamov, Tsezi A. Egorov, Bernd Thiede, Brigitte Wittmann-Liebold, Albrecht Otto posted by 1 person nedwards
	Characterization and Analysis of Posttranslational Modifications of the Human Large Cytoplasmic Ribosomal Subunit Proteins by Mass Spectrometry and Edman Sequencing [My Copy] Journal of Protein Chemistry, Vol. 22, No. 3. (1 April 2003), pp. 249-258. by Tatyana I. Odintsova, Eva-Christina Müller, Anton V. Ivanov, et al.Tsezi A. Egorov, Ralf Bienert, Serguei N. Vladimirov, Susanne Kostka, Albrecht Otto, Brigitte Wittmann-Liebold, Galina G. Karpova posted by 1 person nedwards
	Informatics solutions for high-throughput proteomics [My Copy] Drug Discovery Today, Vol. 11, No. 11-12. (June 2006), pp. 509-516. by T. Topaloglou posted by 1 person nedwards
	Proteomic Studies of the Intrinsically Unstructured Mammalian Proteome [My Copy] Journal of Proteome Research, Vol. 5, No. 10. (1 October 2006), pp. 2839-2848. by Charles A. Galea, Vishwajeeth R. Pagala, John C. Obenauer, Cheon-Gil Park, Clive A. Slaughter, Richard W. Kriwacki posted by 1 person nedwards
	Archaeal N-terminal Protein Maturation Commonly Involves N-terminal Acetylation: A Large-scale Proteomics Survey [My Copy] Journal of Molecular Biology, Vol. 362, No. 5. (06 October 2006), pp. 915-924. by Michaela Falb, Michalis Aivaliotis, Carolina Garcia-Rizo, et al.Birgit Bisle, Andreas Tebbe, Christian Klein, Kosta Konstantinidis, Frank Siedler, Friedhelm Pfeiffer, Dieter Oesterhelt posted by 1 person nedwards
	Organellar peptide deformylases: universality of the N-terminal methionine cleavage mechanism [My Copy] Trends in Plant Science, Vol. 6, No. 12. (1 December 2001), pp. 566-572. by C. Giglione posted by 1 person nedwards
	Automated Proteomics of E. coli via Top-Down Electron-Transfer Dissociation Mass Spectrometry [My Copy] Analytical Chemistry, Vol. 80, No. 5. (1 March 2008), pp. 1459-1467. by Maureen K. Bunger, Benjamin J. Cargile, Anne Ngunjiri, Jonathan L. Bundy, James L. Stephenson posted by 1 person nedwards
	Off-Line Two-Dimensional Liquid Chromatography with Maximized Sample Loading to Reversed-Phase Liquid Chromatography-Electrospray Ionization Tandem Mass Spectrometry for Shotgun Proteome Analysis [My Copy] Analytical Chemistry, Vol. 81, No. 3. (1 February 2009), pp. 1049-1060. by Nan Wang, Chuanhui Xie, J. Bryce Young, Liang Li posted by 2 people brianb nedwards
	GlycoCT—a unifying sequence format for carbohydrates [My Copy] Carbohydrate Research, Vol. 343, No. 12. (11 August 2008), pp. 2162-2171. by S. Herget, R. Ranzinger, K. Maass, Lieth posted by 1 person nedwards
	False discovery rates of protein identifications: a strike against the two-peptide rule. [My Copy] Journal of proteome research, Vol. 8, No. 9. (4 September 2009), pp. 4173-4181. by Nitin Gupta, Pavel A. Pevzner posted by 5 people ptrobajo gjuggler nedwards carlosjavierna brianb
	Boosted Decision Tree Analysis of Surface-enhanced Laser Desorption/Ionization Mass Spectral Serum Profiles Discriminates Prostate Cancer from Noncancer Patients [My Copy] Clin Chem, Vol. 48, No. 10. (1 October 2002), pp. 1835-1843. by Yinsheng Qu, Bao-Ling Adam, Yutaka Yasui, et al.Michael D. Ward, Lisa H. Cazares, Paul F. Schellhammer, Ziding Feng, O. John Semmes, George L. Wright posted by 2 people nnoble35 nedwards
	Serum Proteomic Patterns for Detection of Prostate Cancer [My Copy] J. Natl. Cancer Inst., Vol. 94, No. 20. (16 October 2002), pp. 1576-1578. by Emanuel F. Petricoin, David K. Ornstein, Cloud P. Paweletz, et al.Ali Ardekani, Paul S. Hackett, Ben A. Hitt, Alfredo Velassco, Christian Trucco, Laura Wiegand, Kamillah Wood, Charles B. Simone, Peter J. Levine, W. Marston Linehan, Michael R. Emmert-Buck, Seth M. Steinberg, Elise C. Kohn, Lance A. Liotta posted by 1 person nedwards
	Tandem Mass Spectrometry with Ultrahigh Mass Accuracy Clarifies Peptide Identification by Database Retrieval [My Copy] Journal of Proteome Research, Vol. 8, No. 1. (2 January 2009), pp. 374-379. by Michael T. Boyne, Benjamin A. Garcia, Mingxi Li, et al.Leonid Zamdborg, Craig D. Wenger, Shannee Babai, Neil L. Kelleher posted by 1 person nedwards
	Comparison of Novel Decoy Database Designs for Optimizing Protein Identification Searches Using ABRF sPRG2006 Standard MS/MS Data Sets [My Copy] Journal of Proteome Research, Vol. 8, No. 4. (3 April 2009), pp. 1782-1791. by Luca Bianco, Jennifer A. Mead, Conrad Bessant posted by 2 people brianb nedwards
	A Refined Method To Calculate False Discovery Rates for Peptide Identification Using Decoy Databases [My Copy] Journal of Proteome Research, Vol. 8, No. 4. (3 April 2009), pp. 1792-1796. by Pedro Navarro, Jesús Vázquez posted by 2 people brianb nedwards
	On the estimation of false positives in peptide identifications using decoy search strategy [My Copy] PROTEOMICS, Vol. 9, No. 1. (2009), pp. 194-204. by Changyu Shen, Quanhu Sheng, Jie Dai, Yixue Li, Rong Zeng, Haixu Tang posted by 2 people brianb nedwards
	Testing the Significance of Microorganism Identification by Mass Spectrometry and Proteome Database Search [My Copy] Analytical Chemistry, Vol. 72, No. 16. (1 August 2000), pp. 3739-3744. by Fernando J. Pineda, Jeffrey S. Lin, Catherine Fenselau, Plamen A. Demirev posted by 1 person nedwards
	Gas-Phase Concentration, Purification, and Identification of Whole Proteins from Complex Mixtures [My Copy] Journal of the American Chemical Society, Vol. 124, No. 25. (1 June 2002), pp. 7353-7362. by Gavin E. Reid, Hao Shang, Jason M. Hogan, Gil U. Lee, Scott A. Mcluckey posted by 1 person nedwards
	Informatics and multiplexing of intact protein identification in bacteria and the archaea [My Copy] Nat Biotech, Vol. 19, No. 10. (October 2001), pp. 952-957. by Fanyu Meng, Benjamin J. Cargile, Leah M. Miller, Andrew J. Forbes, Jeffrey R. Johnson, Neil L. Kelleher posted by 1 person nedwards
	The Application of New Software Tools to Quantitative Protein Profiling Via Isotope-coded Affinity Tag (ICAT) and Tandem Mass Spectrometry: I. Statistically Annotated Datasets for Peptide Sequences and Proteins Identified via the Application of ICAT and Tandem Mass Spectrometry to Proteins Copurifying with T Cell Lipid Rafts [My Copy] Mol Cell Proteomics, Vol. 2, No. 7. (1 July 2003), pp. 426-427. by Priska D. von Haller, Eugene Yi, Samuel Donohoe, et al.Kelly Vaughn, Andrew Keller, Alexey I. Nesvizhskii, Jimmy Eng, Xiao-Jun Li, David R. Goodlett, Ruedi Aebersold, Julian D. Watts posted by 1 person nedwards
	Ovarian cancer screening in the Prostate, Lung, Colorectal and Ovarian (PLCO) cancer screening trial: Findings from the initial screen of a randomized trial [My Copy] American Journal of Obstetrics and Gynecology, Vol. 193, No. 5. (November 2005), pp. 1630-1639. by S. Buys, E. Partridge, M. Greene, et al.P. Prorok, D. Reding, T. Riley, P. Hartge, R. Fagerstrom, L. Ragard, D. Chia posted by 1 person nedwards
	Compilation of a MALDI-TOF mass spectral database for the rapid screening and characterisation of bacteria implicated in human infectious diseases [My Copy] Infection, Genetics and Evolution, Vol. 4, No. 3. (September 2004), pp. 221-242. by C. Keys, D. Dare, H. Sutton, et al.G. Wells, M. Lunt, T. Mckenna, M. Mcdowall, H. Shah posted by 1 person nedwards
	The Human Plasma Proteome: History, Character, and Diagnostic Prospects [My Copy] Mol Cell Proteomics, Vol. 1, No. 11. (1 November 2002), pp. 845-867. by N. Leigh Anderson, Norman G. Anderson posted by 1 person nedwards
	Phylogeny of the Enterobacteriaceae based on genes encoding elongation factor Tu and F-ATPase beta-subunit [My Copy] Int J Syst Evol Microbiol, Vol. 55, No. 5. (1 September 2005), pp. 2013-2025. by Sonia Paradis, Maurice Boissinot, Nancy Paquette, et al.Simon D. Belanger, Eric A. Martel, Dominique K. Boudreau, Francois J. Picard, Marc Ouellette, Paul H. Roy, Michel G. Bergeron posted by 1 person nedwards
	The Q-Trap mass spectrometer, a novel tool in the study of protein glycosylation [My Copy] Journal of the American Society for Mass Spectrometry, Vol. 15, No. 3. (March 2004), pp. 413-423. by K. Sandra posted by 1 person nedwards
	Phylogenetic Classification of Pseudomonas putida Strains by MALDI-MS Using Ribosomal Subunit Proteins as Biomarkers [My Copy] Analytical Chemistry, Vol. 79, No. 22. (1 November 2007), pp. 8712-8719. by Kanae Teramoto, Hiroaki Sato, Liwei Sun, et al.Masaki Torimura, Hiroaki Tao, Hiromichi Yoshikawa, Yudai Hotta, Akifumi Hosoda, Hiroto Tamura posted by 1 person nedwards
	Simulation and Prediction of the Adaptive Immune Response to Influenza A Virus Infection [My Copy] J. Virol., Vol. 83, No. 14. (15 July 2009), pp. 7151-7165. by Ha Y. Lee, David J. Topham, Sung Y. Park, et al.Joseph Hollenbaugh, John Treanor, Tim R. Mosmann, Xia Jin, Brian M. Ward, Hongyu Miao, Jeanne Holden-Wiltse, Alan S. Perelson, Martin Zand, Hulin Wu posted by 2 people nedwards friendpine
	A perfect genome annotation is within reach with the proteomics and genomics alliance [My Copy] Current Opinion in Microbiology, Vol. 12, No. 3. (4 June 2009), pp. 292-300. by Jean Armengaud posted by 3 people brianb nedwards guhjy
	Insignia: a DNA signature search web server for diagnostic assay development. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), gkp286. by A. M. Phillippy, K. Ayanbule, N. J. Edwards, S. L. Salzberg posted by 2 people guhjy nedwards
	Toward efficient analysis of <70 kDa proteins with 100% sequence coverage [My Copy] PROTEOMICS, Vol. 1, No. 8. (2001), pp. 927-933. by Andrew J. Forbes, Matthew T. Mazur, Hiten M. Patel, Christopher T. Walsh, Neil L. Kelleher posted by 1 person nedwards
	Classification and Identification of Bacteria by Mass Spectrometry and Computational Analysis [My Copy] PLoS ONE, Vol. 3, No. 7. (30 July 2008), e2843. by Sascha Sauer, Anja Freiwald, Thomas Maier, et al.Michael Kube, Richard Reinhardt, Markus Kostrzewa, Klaus Geider posted by 1 person nedwards
	Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 26. (29 June 2004), pp. 9528-9533. by John E. Syka, Joshua J. Coon, Melanie J. Schroeder, Jeffrey Shabanowitz, Donald F. Hunt posted by 1 person nedwards
	Evaluation of Gas-Phase Rearrangement and Competing Fragmentation Reactions on Protein Phosphorylation Site Assignment Using Collision Induced Dissociation-MS/MS and MS3 [My Copy] Analytical Chemistry, Vol. 80, No. 24. (15 December 2008), pp. 9735-9747. by Amanda M. Palumbo, Gavin E. Reid posted by 1 person nedwards
	The Proteomics of N-terminal Methionine Cleavage [My Copy] Mol Cell Proteomics, Vol. 5, No. 12. (1 December 2006), pp. 2336-2349. by Frederic Frottin, Aude Martinez, Philippe Peynot, et al.Sanghamitra Mitra, Richard C. Holz, Carmela Giglione, Thierry Meinnel posted by 3 people davidivison stefanorb nedwards
	Membrane Protein Identification: N-Terminal Labeling of Nontryptic Membrane Protein Peptides Facilitates Database Searching [My Copy] Journal of Proteome Research, Vol. 7, No. 2. (1 February 2008), pp. 659-665. by Maria Jansson, Kristofer Wårell, Fredrik Levander, Peter James posted by 1 person nedwards
	A Mammalian Organelle Map by Protein Correlation Profiling [My Copy] Vol. 125, No. 1. (7 April 2006), pp. 187-199. by Leonard J. Foster, Carmen L. de Hoog, Yanling Zhang, et al.Yong Zhang, Xiaohui Xie, Vamsi K. Mootha, Matthias Mann posted by 1 person nedwards
	Wnt Activation and Alternative Promoter Repression of LEF1 in Colon Cancer [My Copy] Mol. Cell. Biol., Vol. 26, No. 14. (15 July 2006), pp. 5284-5299. by Tony W. Li, Ju-Hui T. Ting, Noriko N. Yokoyama, Alla Bernstein, Marc van de Wetering, Marian L. Waterman posted by 1 person nedwards
	Virtual Polymorphism: Finding Divergent Peptide Matches in Mass Spectrometry Data [My Copy] Analytical Chemistry, Vol. 79, No. 13. (1 July 2007), pp. 5030-5039. by Rebekah Starkweather, Charles S. Barnes, Gerald J. Wyckoff, Andrew J. Keightley posted by 1 person nedwards
	Low Cost, Scalable Proteomics Data Analysis Using Amazon’s Cloud Computing Services and Open Source Search Algorithms [My Copy] Journal of Proteome Research, Vol. 8, No. 6. (5 June 2009), pp. 3148-3153. by Brian D. Halligan, Joey F. Geiger, Andrew K. Vallejos, Andrew S. Greene, Simon N. Twigger posted by 6 people walshtp Scis0000002 nedwards sjcockell neils brianb
	Crosstalk among Histone Modifications [My Copy] Vol. 135, No. 4. (14 November 2008), pp. 604-607. by Tamaki Suganuma, Jerry L. Workman posted by 2 people brianb nedwards
	Lysine acetylation: codified crosstalk with other posttranslational modifications. [My Copy] Molecular cell, Vol. 31, No. 4. (22 August 2008), pp. 449-461. by Xiang-Jiao J. Yang, Edward Seto posted by 3 people nzm guhjy nedwards
	The MAP kinase signal transduction network in Candida albicans [My Copy] Microbiology, Vol. 152, No. 4. (1 April 2006), pp. 905-912. by Alonso R. Monge, E. Roman, C. Nombela, J. Pla posted by 1 person nedwards
	p38 MAP kinases: key signalling molecules as therapeutic targets for inflammatory diseases [My Copy] Nat Rev Drug Discov, Vol. 2, No. 9. (September 2003), pp. 717-726. by Sanjay Kumar, Jeffrey Boehm, John C. Lee posted by 1 person nedwards
	Genetic analysis of the kinome and phosphatome in cancer [My Copy] Cellular and Molecular Life Sciences (CMLS), Vol. 62, No. 18. (1 September 2005), pp. 2092-2099. by S. Arena, S. Benvenuti, A. Bardelli posted by 1 person nedwards
	Proteomic Analysis of Integral Plasma Membrane Proteins [My Copy] Analytical Chemistry, Vol. 76, No. 7. (1 April 2004), pp. 1817-1823. by Yingxin Zhao, Wei Zhang, Yoonjung Kho, Yingming Zhao posted by 1 person nedwards
	An Unsupervised, Model-Free, Machine-Learning Combiner for Peptide Identifications from Tandem Mass Spectra [My Copy] Clinical Proteomics by Nathan Edwards, Xue Wu, Chau-Wen Tseng posted by 2 people nedwards brianb
	Top-Down Protein Identification/Characterization of a Priori Unknown Proteins via Ion Trap Collision-Induced Dissociation and Ion/Ion Reactions in a Quadrupole/Time-of-Flight Tandem Mass Spectrometer [My Copy] Analytical Chemistry, Vol. 81, No. 4. (15 February 2009), pp. 1433-1441. by Jian Liu, Teng-Yi Huang, Scott A. Mcluckey posted by 2 people brianb nedwards
	De novo glycan structure search with CID MS/MS spectra of native N-glycopeptides. [My Copy] Glycobiology (6 March 2009) by Hannu Peltoniemi, Sakari Joenväärä, Risto Renkonen posted by 3 people nedwards fishtank Terkko
	A Sequence-specific Exopeptidase Activity Test (SSEAT) for "Functional" Biomarker Discovery [My Copy] Mol Cell Proteomics, Vol. 7, No. 3. (1 March 2008), pp. 509-518. by Josep Villanueva, Arpi Nazarian, Kevin Lawlor, San S. Yi, Richard J. Robbins, Paul Tempst posted by 2 people olberd nedwards
	Serum Peptide Profiling by Magnetic Particle-Assisted, Automated Sample Processing and MALDI-TOF Mass Spectrometry [My Copy] Analytical Chemistry, Vol. 76, No. 6. (1 March 2004), pp. 1560-1570. by Josep Villanueva, John Philip, David Entenberg, et al.Carlos A. Chaparro, Meena K. Tanwar, Eric C. Holland, Paul Tempst posted by 2 people olberd nedwards
	Correcting Common Errors in Identifying Cancer-Specific Serum Peptide Signatures† [My Copy] Journal of Proteome Research, Vol. 4, No. 4. (1 August 2005), pp. 1060-1072. by Josep Villanueva, John Philip, Carlos A. Chaparro, et al.Yongbiao Li, Ricardo Toledo-Crow, Lin DeNoyer, Martin Fleisher, Richard J. Robbins, Paul Tempst posted by 2 people olberd nedwards
	Automated interpretation of MS/MS spectra of oligosaccharides [My Copy] Bioinformatics, Vol. 21, No. suppl_1. (1 June 2005), pp. i431-439. by Haixu Tang, Yehia Mechref, Milos V. Novotny posted by 2 people nedwards robert
	Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol. [My Copy] Genome research, Vol. 19, No. 1. (January 2009), pp. 128-135. by Sébastien Gallien, Emmanuel Perrodou, Christine Carapito, et al.Caroline Deshayes, Jean-Marc M. Reyrat, Alain Van Dorsselaer, Olivier Poch, Christine Schaeffer, Odile Lecompte posted by 2 people nedwards guhjy
	Tumor-specific serum peptidome patterns. [My Copy] AACR Meeting Abstracts, Vol. 2006, No. 1. (1 April 2006), 1358. by Paul Tempst, Josep Villanueva, David R. Shaffer, et al.Andrew Martorella, Mark E. Robson, Kevin Lawlor, John Philip, Martin Fleisher, Hans Lilja, Eric C. Holland, Richard J. Robbins, Carlos Cordon-Cardo, Howard I. Scher posted by 2 people olberd nedwards
	Differential exoprotease activities confer tumor-specific serum peptidome patterns [My Copy] Journal of Clinical Investigation, Vol. 116, No. 1. (08 December 2005), pp. 271-284. by J. Villanueva posted by 2 people olberd nedwards
	Protein identification using sequential ion/ion reactions and tandem mass spectrometry [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 27. (5 July 2005), pp. 9463-9468. by Joshua J. Coon, Beatrix Ueberheide, John E. Syka, et al.Deanna D. Dryhurst, Juan Ausio, Jeffrey Shabanowitz, Donald F. Hunt posted by 1 person nedwards
	PLIPS, an Automatically Collected Database of Protein Lists Reported by Proteomics Studies. [My Copy] Journal of proteome research (13 February 2009) by Alexey V V. Antonov, Sabine Dietmann, Philip Wong, Rodchenkov Igor, Hans W W. Mewes posted by 3 people nedwards guhjy sjcockell
	Pathway-based biomarker search by high-throughput proteomics profiling of secretomes. [My Copy] Journal of proteome research, Vol. 8, No. 3. (March 2009), pp. 1489-1503. by Kevin Lawlor, Arpi Nazarian, Lynne Lacomis, Paul Tempst, Josep Villanueva posted by 5 people guhjy xingxu nedwards neils brianb
	Sequence Similarity-Based Proteomics in Insects: Characterization of the Larvae Venom of the Brazilian Moth Cerodirphia speciosa [My Copy] Journal of Proteome Research, Vol. 4, No. 3. (1 June 2005), pp. 862-869. by Anna Shevchenko, Leal, Patrice Waridel, Silvia T. Bittencourt, Valle, Andrej Shevchenko posted by 1 person nedwards
	Charting the Proteomes of Organisms with Unsequenced Genomes by MALDI-Quadrupole Time-of-Flight Mass Spectrometry and BLAST Homology Searching [My Copy] Analytical Chemistry, Vol. 73, No. 9. (1 May 2001), pp. 1917-1926. by Andrej Shevchenko, Shamil Sunyaev, Alexander Loboda, et al.Anna Shevchenko, Peer Bork, Werner Ens, Kenneth G. Standing posted by 1 person nedwards
	The Power and the Limitations of Cross-Species Protein Identification by Mass Spectrometry-driven Sequence Similarity Searches [My Copy] Mol Cell Proteomics, Vol. 3, No. 3. (1 March 2004), pp. 238-249. by Bianca Habermann, Jeffrey Oegema, Shamil Sunyaev, Andrej Shevchenko posted by 1 person nedwards
	Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger [My Copy] BMC Genomics, Vol. 10, No. 1. (04 February 2009), 61. by James Wright, Deana Sugden, Sue F. McIntyre, et al.Isabel R. Garcia, Simon Gaskell, Igor Grigoriev, Scott Baker, Robert Beynon, Simon Hubbard posted by 5 people nedwards bcondon nlapalu Mycology stajich
	TALE: A Tool for Approximate Large Graph Matching [My Copy] Data Engineering, 2008. ICDE 2008. IEEE 24th International Conference on In Data Engineering, 2008. ICDE 2008. IEEE 24th International Conference on (2008), pp. 963-972. by Yuanyuan Tian, J. M. Patel posted by 1 person nedwards
	Prediction of high-responding peptides for targeted protein assays by mass spectrometry [My Copy] Nature Biotechnology, Vol. 27, No. 2. (25 January 2009), pp. 190-198. by Vincent A. Fusaro, D. R. Mani, Jill P. Mesirov, Steven A. Carr posted by 5 people nedwards guhjy prost8 absterga brianb
	Discovery and revision of Arabidopsis genes by proteogenomics [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 52. (30 December 2008), pp. 21034-21038. by Natalie E. Castellana, Samuel H. Payne, Zhouxin Shen, Mario Stanke, Vineet Bafna, Steven P. Briggs posted by 6 people natstreet dandaman brianb nedwards TRHvidsten jmartin49
	Application of Capture−Recapture Models to Estimation of Protein Count in MudPIT Experiments [My Copy] Analytical Chemistry, Vol. 78, No. 9. (1 May 2006), pp. 3203-3207. by James A. Koziol, Anne C. Feng, Jan E. Schnitzer posted by 1 person nedwards
	A large-scale analysis of tissue-specific pathology and gene expression of human disease genes and complexes [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 52. (30 December 2008), pp. 20870-20875. by Kasper Lage, Niclas T. Hansen, Olof E. Karlberg, et al.Aron C. Eklund, Francisco S. Roque, Patricia K. Donahoe, Zoltan Szallasi, Thomas S. Jensen, Søren Brunak posted by 5 people grahamc bertelsen brianb nedwards jfr
	The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results. [My Copy] BMC Bioinformatics, Vol. 9 (09 December 2008), 529. by John, Rembert Pieper posted by 7 people brianb nedwards robert nuin guhjy sjcockell braistedj
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	Analysis of cell surface proteome changes via label-free, quantitative mass spectrometry. [My Copy] Molecular & cellular proteomics : MCP (25 November 2008) by Ralph Schiess, Lukas N N. Mueller, Alexander Schmidt, Markus Mueller, Bernd Wollscheid, Ruedi Aebersold posted by 3 people nedwards guhjy brianb
	Real-Time DNA Sequencing from Single Polymerase Molecules [My Copy] Science, Vol. 323, No. 5910. (2 January 2009), pp. 133-138. by John Eid, Adrian Fehr, Jeremy Gray, et al.Khai Luong, John Lyle, Geoff Otto, Paul Peluso, David Rank, Primo Baybayan, Brad Bettman, Arkadiusz Bibillo, Keith Bjornson, Bidhan Chaudhuri, Frederick Christians, Ronald Cicero, Sonya Clark, Ravindra Dalal, Alex deWinter, John Dixon, Mathieu Foquet, Alfred Gaertner, Paul Hardenbol, Cheryl Heiner, Kevin Hester, David Holden, Gregory Kearns, Xiangxu Kong, Ronald Kuse, Yves Lacroix, Steven Lin, Paul Lundquist, Congcong Ma, Patrick Marks, Mark Maxham, Devon Murphy, Insil Park, Thang Pham, Michael Phillips, Joy Roy, Robert Sebra, Gene Shen, Jon Sorenson, Austin Tomaney, Kevin Travers, Mark Trulson, John Vieceli, Jeffrey Wegener, Dawn Wu, Alicia Yang, Denis Zaccarin, Peter Zhao, Frank Zhong, Jonas Korlach, Stephen Turner posted by 42 people hzoltan operon n00c kinestetika mtagaya iSEEM jlgreen dna idoerg absterga lukzky ImranRaoufMalik Archaeogenetics inesdesantiago 7ac5 wimufi cactus jasontsai mlangill melting polivares pkonings natstreet fhalbrit druvus felsani moernerlab samjlord Bioinformatics - CRUK Stew ghattem nedwards myzhang pengchy jbhiatt GeeSharpMinor GustavoLacerda azazello sconlan alexknight emptyhb caseybrown
	The N-end rule: functions, mysteries, uses [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 22. (29 October 1996), pp. 12142-12149. by A. Varshavsky posted by 2 people nedwards MarcJungbluth
	SeMoP: A New Computational Strategy for the Unrestricted Search for Modified Peptides Using LC−MS/MS Data [My Copy] Journal of Proteome Research, Vol. 7, No. 9. (5 September 2008), pp. 4199-4208. by Christian Baumgartner, Tomas Rejtar, Majlinda Kullolli, Lakshmi M. Akella, Barry L. Karger posted by 2 people nedwards guhjy
	Proteome-Wide Identification of Proteins and Their Modifications with Decreased Ambiguities and Improved False Discovery Rates Using Unique Sequence Tags [My Copy] Anal. Chem., Vol. 80, No. 6. (15 March 2008), pp. 1871-1882. by Y. Shen, N. Tolic, K. K. Hixson, et al.S. O. Purvine, L. Pasa-Tolic, W. J. Qian, J. N. Adkins, R. J. Moore, R. D. Smith posted by 1 person nedwards
	Fault Diagnosis Engineering of Digital Circuits Can Identify Vulnerable Molecules in Complex Cellular Pathways [My Copy] Sci. Signal., Vol. 1, No. 42. (21 October 2008), ra10. by Ali Abdi, Mehdi B. Tahoori, Effat S. Emamian posted by 1 person nedwards
	Peptide Sequence Confidence in Accurate Mass and Time Analysis and Its Use in Complex Proteomics Experiments [My Copy] J. Proteome Res. (28 October 2008) by Damon May, Yan Liu, Wendy Law, et al.Matt Fitzgibbon, Hong Wang, Samir Hanash, Martin Mcintosh posted by 3 people nedwards brianb neils
	Protein Interaction Verification and Functional Annotation by Integrated Analysis of Genome-Scale Data [My Copy] Molecular Cell, Vol. 9, No. 5. (May 2002), pp. 1133-1143. by Patrick Kemmeren, Nynke L. van Berkum, Jaak Vilo, et al.Theo Bijma, Rogier Donders, Alvis Brazma, Frank C. Holstege posted by 3 people phoenixzxl nedwards Robinder
	New and Automated MSn Approaches for Top-Down Identification of Modified Proteins [My Copy] Journal of the American Society for Mass Spectrometry, Vol. 16, No. 12. (December 2005), pp. 2027-2038. by V. Zabrouskov, M. Senko, Y. Du, R. Leduc, N. Kelleher posted by 1 person nedwards
	Protein Identification by Tandem Mass Spectrometry and Sequence Database Searching [My Copy] Mass Spectrometry Data Analysis in Proteomics, Vol. 367 (2007), pp. 87-119. by Alexey I. Nesvizhskii posted by 3 people nedwards shikin fishtank
	Efficient High-Throughput Discovery of Large Peptidic Hormones and Biomarkers [My Copy] J. Proteome Res., Vol. 5, No. 7. (7 July 2006), pp. 1776-1784. by S. W. Taylor, N. L. Andon, J. M. Bilakovics, et al.C. Lowe, M. R. Hanley, R. Pittner, S. S. Ghosh posted by 2 people brianb nedwards
	Characterization of Strategies for Obtaining Confident Identifications in Bottom-Up Proteomics Measurements Using Hybrid FTMS Instruments [My Copy] Anal. Chem. (15 October 2008) by Aleksey V. Tolmachev, Matthew E. Monroe, Samuel O. Purvine, et al.Ronald J. Moore, Navdeep Jaitly, Joshua N. Adkins, Gordon A. Anderson, Richard D. Smith posted by 3 people guhjy nedwards brianb
	Analysis of the Arabidopsis Cytosolic Ribosome Proteome Provides Detailed Insights into Its Components and Their Post-translational Modification [My Copy] Mol Cell Proteomics, Vol. 7, No. 2. (1 February 2008), pp. 347-369. by Adam J. Carroll, Joshua L. Heazlewood, Jun Ito, Harvey A. Millar posted by 1 person nedwards
	Versatile Online−Offline Engine for Automated Acquisition of High-Resolution Tandem Mass Spectra [My Copy] Analytical Chemistry, Vol. 80, No. 21. (1 November 2008), pp. 8055-8063. by Craig D. Wenger, Michael T. Boyne, Jonathan T. Ferguson, Dana E. Robinson, Neil L. Kelleher posted by 2 people nedwards brianb