jasontsai's Top Recommendations

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	Genome assembly reborn: recent computational challenges [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 354-366. by Mihai Pop posted by 32 people jfr hzoltan cthachuk GustavoLacerda n00c agbiotec shabhonam pachorip APRegier jmcq stevebs jonilaserson michaelbarton inesdesantiago GeeSharpMinor bertelsen aprasad ananta_samudra sandfire jmeppley mlangill fgibson Journal picks ppgardne TRHvidsten pengchy robsyme nuin kiekyon natstreet druvus idoerg
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven Salzberg posted by 41 people jfr hzoltan cthachuk darshan fstrozzi adijr debasis bozdagd BergmanLab polivares torfinnnome n00c talponer jmcq rschulz SIMR bioinformatics ghattem operon humburg idonaldson mmartin iSEEM skembel dquest heliopais djkt GeeSharpMinor bertelsen darian Notre Dame Bioinformatics semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus
	RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. [My Copy] Genome research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted by 49 people cthachuk hzoltan jwfoley heliopais debasis maren mtagaya mkiyer stubrown woodson8 jonilaserson burak Ayest ThomasDOtto SIMR bioinformatics huali n00c natstreet bandrewfox daed dandaman slevy03 pengchy felsani coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich Mycology giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda
	Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. [My Copy] Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1239-1243. by Brian T. Wilhelm, Samuel Marguerat, Stephen Watt, et al.Falk Schubert, Valerie Wood, Ian Goodhead, Christopher J. Penkett, Jane Rogers, Jürg Bähler posted by 16 people hzoltan manduca jmcq natstreet n00c TRHvidsten poschm michaelbarton caseybrown myourshaw djkt jonathanjacobs Molecular Biology GeeSharpMinor guhjy semrich
	Fast mapping of short sequences with mismatches, insertions and deletions using index structures. [My Copy] PLoS computational biology, Vol. 5, No. 9. (11 September 2009), e1000502. by Steve Hoffmann, Christian Otto, Stefan Kurtz, et al.Cynthia M. Sharma, Philipp Khaitovich, Jörg Vogel, Peter F. Stadler, Jörg Hackermüller posted by 24 people cthachuk hzoltan darian nuin fenghezi behindtherabbit jandot walshtp torfinnnome stubrown Bioinformatics dswan BergmanLab polivares orzenil natstreet iSEEM djkt jmcq n00c heliopais ppgardne Journal picks druvus
	Fast and accurate short read alignment with Burrows-Wheeler transform. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted by 39 people Julien_Fayolle lianping hzoltan cthachuk maren bozdagd adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson michaelbarton BergmanLab polivares darian orzenil cassj inesdesantiago TRHvidsten djkt operon SIMR bioinformatics ghattem n00c Bioinformatics danmaclean Journal picks ppgardne nuin rschulz natstreet druvus humburg
	Transcript length bias in RNA-seq data confounds systems biology. [My Copy] Biology direct, Vol. 4, No. 1. (16 April 2009), 14. by Alicia Oshlack, Matthew J. Wakefield posted by 16 people hzoltan manduca jwfoley juokcho debasis stubrown dswan jmcq guhjy woodson8 n00c SIMR bioinformatics ghattem xingxu cajunsushi bandrewfox
	TopHat: discovering splice junctions with RNA-Seq. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 9. (1 May 2009), pp. 1105-1111. by Cole Trapnell, Lior Pachter, Steven L. Salzberg posted by 28 people juokcho cthachuk hzoltan jwfoley heliopais dakelley druvus GustavoLacerda stubrown BergmanLab polivares torfinnnome jmcq mtagaya jonilaserson gdb guhjy ThomasDOtto n00c SIMR bioinformatics ghattem xingxu djkt vplagnol bertelsen natstreet idoerg vmsr
	Annotating genomes with massive-scale RNA sequencing. [My Copy] Genome biology, Vol. 9, No. 12. (2008), R175. by France Denoeud, Jean-Marc M. Aury, Corinne Da Silva, et al.Benjamin Noel, Odile Rogier, Massimo Delledonne, Michele Morgante, Giorgio Valle, Patrick Wincker, Claude Scarpelli, Olivier Jaillon, François Artiguenave posted by 22 people hzoltan cthachuk GustavoLacerda jamselem n00c jonilaserson SIMR bioinformatics ghattem nlapalu jmcq dandaman abizar dakelley inesdesantiago mhamada pengchy balicea fhalbrit GeeSharpMinor natstreet druvus neils
	RNA-Seq: a revolutionary tool for transcriptomics. [My Copy] Nature reviews. Genetics, Vol. 10, No. 1. (01 January 2009), pp. 57-63. by Zhong Wang, Mark Gerstein, Michael Snyder posted by 43 people CUBES hongkeun_park ngehlenborg hzoltan sandfire maren jwfoley urgi RNA-protein cthachuk heliopais GustavoLacerda rdiaz TRHvidsten dswan roys woodson8 jonilaserson gdb n00c ThomasDOtto burak natstreet athma druvus tonamswish fishtank daed JohnBallam jmcq dandaman cassj xingxu idonaldson raiyar inesdesantiago vplagnol jbhiatt giovanni orzenil nuin guhjy GeeSharpMinor
	Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing [My Copy] Nature Genetics, Vol. 40, No. 12. (02 November 2008), pp. 1413-1415. by Qun Pan, Ofer Shai, Leo J. Lee, Brendan J. Frey, Benjamin J. Blencowe posted by 21 people hzoltan torfinnnome n00c ericrpaquet jonilaserson ThomasDOtto giovanni frohike fenghezi jfr zxmon21 jmcq poschm wimufi xingxu inesdesantiago jbhiatt rschulz djkt dchughes GeeSharpMinor
	Accurate whole human genome sequencing using reversible terminator chemistry. [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 53-59. by David R. Bentley, Shankar Balasubramanian, Harold P. Swerdlow, et al.Geoffrey P. Smith, John Milton, Clive G. Brown, Kevin P. Hall, Dirk J. Evers, Colin L. Barnes, Helen R. Bignell, Jonathan M. Boutell, Jason Bryant, Richard J. Carter, R. Keira Cheetham, Anthony J. Cox, Darren J. Ellis, Michael R. Flatbush, Niall A. Gormley, Sean J. Humphray, Leslie J. Irving, Mirian S. Karbelashvili, Scott M. Kirk, Heng Li, Xiaohai Liu, Klaus S. Maisinger, Lisa J. Murray, Bojan Obradovic, Tobias Ost, Michael L. Parkinson, Mark R. Pratt, Isabelle M. Rasolonjatovo, Mark T. Reed, Roberto Rigatti, Chiara Rodighiero, Mark T. Ross, Andrea Sabot, Subramanian V. Sankar, Aylwyn Scally, Gary P. Schroth, Mark E. Smith, Vincent P. Smith, Anastassia Spiridou, Peta E. Torrance, Svilen S. Tzonev, Eric H. Vermaas, Klaudia Walter, Xiaolin Wu, Lu Zhang, Mohammed D. Alam, Carole Anastasi, Ify C. Aniebo, David M. Bailey, Iain R. Bancarz, Saibal Banerjee, Selena G. Barbour, Primo A. Baybayan, Vincent A. Benoit, Kevin F. Benson, Claire Bevis, Phillip J. Black, Asha Boodhun, Joe S. Brennan, John A. Bridgham, Rob C. Brown, Andrew A. Brown, Dale H. Buermann, Abass A. Bundu, James C. Burrows, Nigel P. Carter, Nestor Castillo, Maria Chiara E Catenazzi, Simon Chang, R. Neil Cooley, Natasha R. Crake, Olubunmi O. Dada, Konstantinos D. Diakoumakos, Belen Dominguez-Fernandez, David J. Earnshaw, Ugonna C. Egbujor, David W. Elmore, Sergey S. Etchin, Mark R. Ewan, Milan Fedurco, Louise J. Fraser, Karin V. Fuentes Fajardo, W. Scott Furey, David George, Kimberley J. Gietzen, Colin P. Goddard, George S. Golda, Philip A. Granieri, David E. Green, David L. Gustafson, Nancy F. Hansen, Kevin Harnish, Christian D. Haudenschild, Narinder I. Heyer, Matthew M. Hims, Johnny T. Ho, Adrian M. Horgan, Katya Hoschler, Steve Hurwitz, Denis V. Ivanov, Maria Q. Johnson, Terena James, T. A. Huw Jones, Gyoung-Dong D. Kang, Tzvetana H. Kerelska, Alan D. Kersey, Irina Khrebtukova, Alex P. Kindwall, Zoya Kingsbury, Paula I. Kokko-Gonzales, Anil Kumar, Marc A. Laurent, Cynthia T. Lawley, Sarah E. Lee, Xavier Lee, Arnold K. Liao, Jennifer A. Loch, Mitch Lok, Shujun Luo, Radhika M. Mammen, John W. Martin, Patrick G. McCauley, Paul McNitt, Parul Mehta, Keith W. Moon, Joe W. Mullens, Taksina Newington, Zemin Ning, Bee Ling Ng, Sonia M. Novo, Michael J. O'Neill, Mark A. Osborne, Andrew Osnowski, Omead Ostadan, Lambros L. Paraschos, Lea Pickering, Andrew C. Pike, Alger C. Pike, D. Chris Pinkard, Daniel P. Pliskin, Joe Podhasky, Victor J. Quijano, Come Raczy, Vicki H. Rae, Stephen R. Rawlings, Ana Chiva Rodriguez, Phyllida M. Roe, John Rogers, Maria C. Rogert Bacigalupo, Nikolai Romanov, Anthony Romieu, Rithy K. Roth, Natalie J. Rourke, Silke T. Ruediger, Eli Rusman, Raquel M. Sanches-Kuiper, Martin R. Schenker, Josefina M. Seoane, Richard J. Shaw, Mitch K. Shiver, Steven W. Short, Ning L. Sizto, Johannes P. Sluis, Melanie A. Smith, Jean Ernest Sohna Sohna, Eric J. Spence, Kim Stevens, Neil Sutton, Lukasz Szajkowski, Carolyn L. Tregidgo, Gerardo Turcatti, Stephanie Vandevondele, Yuli Verhovsky, Selene M. Virk, Suzanne Wakelin, Gregory C. Walcott, Jingwen Wang, Graham J. Worsley, Juying Yan, Ling Yau, Mike Zuerlein, Jane Rogers, James C. Mullikin, Matthew E. Hurles, Nick J. McCooke, John S. West, Frank L. Oaks, Peter L. Lundberg, David Klenerman, Richard Durbin, Anthony J. Smith posted by 31 people hzoltan rshe pst gbenson giovenko n00c clearbluespring xingxu dna austin jessopher daforerog vmsr jfr azazello nuin usagi-kirin Archaeogenetics SIMR bioinformatics malcook psique tsherig jbhiatt pengchy reyez jmcq inesdesantiago ojabado caseybrown pkonings djkt
	Next-generation DNA sequencing. [My Copy] Nature biotechnology, Vol. 26, No. 10. (09 October 2008), pp. 1135-1145. by Jay Shendure, Hanlee Ji posted by 50 people Jporci daforerog dchughes hzoltan cthachuk giovenko heliopais seb1 installe niallhaslam Vincent_Rouilly rschulz fishtank bluto Annab katholt jmcq michaelbarton n00c jfr dna nzm farhat idoerg mhz mmartin antonkratz jbhiatt yupu Bioinformatics behindtherabbit guhjy Pascalichouchou frohike dakelley ptrobajo zwang Roswell Cancer Crosstalk Zephyrus psique natstreet druvus nuin alexknight reyez dbk Oxford Virology wsjames pengchy GeeSharpMinor
	Mapping short DNA sequencing reads and calling variants using mapping quality scores. [My Copy] Genome research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted by 42 people Julien_Fayolle seninp heliopais hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier SIMR bioinformatics ghattem jbhiatt mmartin michaelbarton BergmanLab polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat
	Mapping and quantifying mammalian transcriptomes by RNA-Seq. [My Copy] Nature methods, Vol. 5, No. 7. (30 July 2008), pp. 621-628. by Ali Mortazavi, Brian A. Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold posted by 45 people manduca cthachuk hzoltan jwfoley heliopais juokcho aktas debasis bertelsen idonaldson darian stubrown Bioinformatics dswan ewilban1 mtagaya woodson8 burak jonilaserson inesdesantiago ThomasDOtto n00c GustavoG SIMR bioinformatics ghattem vplagnol druvus cfvillalta vmsr poschm dandaman shikin jmcq rschulz lp2 tmcphillips jfr myourshaw megraw GeeSharpMinor caseybrown xingxu guhjy shurjo gdb
	Bioinformatics challenges of new sequencing technology [My Copy] Trends in Genetics, Vol. 24, No. 3. (11 February 2008), pp. 142-149. by M. Pop, S. Salzberg posted by 37 people Jporci cthachuk hzoltan hpaces heliopais imaginatio operon daforerog n00c ptrobajo orzenil APRegier katholt michaelbarton kiekyon thegoose2 xingxu floatingpoint polivares yupu treangen jmcq delenickphd giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam urgi Neeperando jfr tharris mariakmejia caseybrown yoonk druvus
	A fast hybrid short read fragment assembly algorithm [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2279-2280. by Bertil Schmidt, Ranjan Sinha, Bryan Beresford-Smith, Simon J. Puglisi posted by 19 people torfinnnome hzoltan cthachuk orzenil GustavoLacerda APRegier dakelley katholt GeeSharpMinor dayjm djkt Bioinformatics dswan Journal picks pachorip natstreet druvus n00c jmeppley
	CloudBurst: highly sensitive read mapping with MapReduce [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1363-1369. by Michael C. Schatz posted by 36 people joshdsullivan cthachuk hzoltan jfr walshtp idonaldson orzenil heliopais dakelley bozdagd agbiotec jandot guhjy n00c cymacs semrich nuin operon AlexBateman fgibson KCL & UCL Bioinformatics rschulz Bioinformatics dswan mitko djkt humburg jmeppley coela vagoskar svenrahmann natstreet brianb Neeperando druvus neils
	CNV-seq, a new method to detect copy number variation using high-throughput sequencing. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 80. by Chao Xie, Martti T. Tammi posted by 20 people hzoltan biovils stubrown cthachuk GustavoLacerda n00c darian bmenten natstreet sameersoi svenrahmann xiechao semrich pkonings rdiaz dswan Bioinformatics sleepingcell neils magusina
	The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing [My Copy] Science, Vol. 320, No. 5881. (6 June 2008), pp. 1344-1349. by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, et al.Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder posted by 26 people hzoltan bartjacobse GustavoLacerda debasis dbensasson cfvillalta rdowell poschm jmcq waszak michaelbarton djkt urgi stajich Mycology semrich caseybrown gjuggler Retchless biomcgary GeeSharpMinor mapplab faion bpcusack guhjy shurjo
	Direct RNA sequencing. [My Copy] Nature, Vol. 461, No. 7265. (8 October 2009), pp. 814-818. by Fatih Ozsolak, Adam R. Platt, Dan R. Jones, et al.Jeffrey G. Reifenberger, Lauryn E. Sass, Peter McInerney, John F. Thompson, Jayson Bowers, Mirna Jarosz, Patrice M. Milos posted by 23 people pmalkus hzoltan manduca gotgenes jwfoley GeeSharpMinor mlc39 colinveal reyez TRHvidsten djkt ppgardne dchughes heliopais vingron nzm n00c lp2 toni_marco dswan Journal picks kinestetika Bioinformatics - CRUK
	TagDust--a program to eliminate artifacts from next generation sequencing data [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2839-2840. by Timo Lassmann, Yoshihide Hayashizaki, Carsten O. Daub posted by 22 people orzenil hzoltan chvlyl operon kshameer djkt rtogawa seb1 idonaldson nuin debasis jgill GeeSharpMinor Journal picks sotacam torfinnnome walshtp heliopais jandot n00c rschulz druvus
	Targeted capture and massively parallel sequencing of 12 human exomes. [My Copy] Nature, Vol. 461, No. 7261. (10 September 2009), pp. 272-276. by Sarah B. Ng, Emily H. Turner, Peggy D. Robertson, et al.Steven D. Flygare, Abigail W. Bigham, Choli Lee, Tristan Shaffer, Michelle Wong, Arindam Bhattacharjee, Evan E. Eichler, Michael Bamshad, Deborah A. Nickerson, Jay Shendure posted by 25 people seb1 hzoltan liqbbi chvlyl ongenetics psique fenghezi n00c dswan jmanning2k torfinnnome GeeSharpMinor pkonings neils djkt daforerog PabloMarin stubrown danmaclean xingxu vplagnol druvus Journal picks jandot frohike
	LookSeq: A browser-based viewer for deep sequencing data [My Copy] Genome Research, Vol. 19, No. 11. (29 November 2009), pp. 2125-2132. by Heinrich M. Manske, Dominic P. Kwiatkowski posted by 30 people hzoltan darian dakelley tonamswish inesdesantiago Thaverkamp BergmanLab idonaldson heliopais owhitney GustavoLacerda ngehlenborg sandfire fpattyn xianjun katholt stubrown orzenil operon guhjy kongl Mycology stajich n00c torfinnnome nuin kshameer neils druvus natstreet
	RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2615-2616. by Nicole Cloonan, Qinying Xu, Geoffrey J. Faulkner, et al.Darrin F. Taylor, Dave T. P. Tang, Gabriel Kolle, Sean M. Grimmond posted by 16 people hzoltan idonaldson cthachuk ethanmj cassj GeeSharpMinor Journal picks sbmontgomery shyamsg natstreet dswan druvus samgj n00c guhjy GustavoLacerda
	Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding [My Copy] Genome Research, Vol. 19, No. 9. (22 September 2009), pp. 1527-1541. by Kevin J. McKernan, Heather E. Peckham, Gina L. Costa, et al.Stephen F. McLaughlin, Yutao Fu, Eric F. Tsung, Christopher R. Clouser, Cisyla Duncan, Jeffrey K. Ichikawa, Clarence C. Lee, Zheng Zhang, Swati S. Ranade, Eileen T. Dimalanta, Fiona C. Hyland, Tanya D. Sokolsky, Lei Zhang, Andrew Sheridan, Haoning Fu, Cynthia L. Hendrickson, Bin Li, Lev Kotler, Jeremy R. Stuart, Joel A. Malek, Jonathan M. Manning, Alena A. Antipova, Damon S. Perez, Michael P. Moore, Kathleen C. Hayashibara, Michael R. Lyons, Robert E. Beaudoin, Brittany E. Coleman, Michael W. Laptewicz, Adam E. Sannicandro, Michael D. Rhodes, Rajesh K. Gottimukkala, Shan Yang, Vineet Bafna, Ali Bashir, Andrew MacBride, Can Alkan, Jeffrey M. Kidd, Evan E. Eichler, Martin G. Reese, Francisco M. De La Vega, Alan P. Blanchard posted by 18 people hzoltan gbenson adijr chrisamiller heliopais daforerog druvus djkt psique sameersoi APRegier fenghezi jmanning2k xingxu pkonings n00c jandot natstreet
	Evidence for human microRNA-offset RNAs in small RNA sequencing data [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2298-2301. by David Langenberger, Clara Bermudez-Santana, Jana Hertel, Steve Hoffmann, Philipp Khaitovich, Peter F. Stadler posted by 10 people hzoltan microRNA microRNA heliopais dswan natstreet fishtank n00c kutter01 samgj
	SNP-o-matic [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2434-2435. by Heinrich M. Manske, Dominic P. Kwiatkowski posted by 13 people hzoltan darian GeeSharpMinor daforerog ThomasDOtto natstreet misonneh druvus guhjy Zephyrus orzenil n00c Journal picks
	JBrowse: A next-generation genome browser [My Copy] Genome Research, Vol. 19, No. 9. (1 September 2009), pp. 1630-1638. by Mitchell E. Skinner, Andrew V. Uzilov, Lincoln D. Stein, Christopher J. Mungall, Ian H. Holmes posted by 31 people hzoltan darian mkiyer daforerog n00c torfinnnome fenghezi djkt WXuan Zephyrus idonaldson pkonings inesdesantiago jcbarret jamselem aprasad urgi polivares cassj guhjy giovanni druvus natstreet fpattyn BergmanLab cisevol danmaclean Journal picks timhubbard operon neils
	VarScan: variant detection in massively parallel sequencing of individual and pooled samples [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2283-2285. by Daniel C. Koboldt, Ken Chen, Todd Wylie, et al.David E. Larson, Michael D. McLellan, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Li Ding posted by 19 people hzoltan Peiyong darian seb1 heliopais mkiyer dakelley djkt Journal picks PabloMarin guhjy n00c orzenil natstreet druvus Mycology stajich SIMR bioinformatics malcook
	Detection of single nucleotide variations in expressed exons of the human genome using RNA-Seq [My Copy] Nucl. Acids Res., Vol. 37, No. 16. (1 September 2009), e106. by Iouri Chepelev, Gang Wei, Qingsong Tang, Keji Zhao posted by 8 people hzoltan woodson8 n00c guhjy fenghezi SIMR bioinformatics ghattem GeeSharpMinor
	SOAP2: an improved ultrafast tool for short read alignment [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1966-1967. by Ruiqiang Li, Chang Yu, Yingrui Li, et al.Tak-Wah Lam, Siu-Ming Yiu, Karsten Kristiansen, Jun Wang posted by 33 people hzoltan agbiotec torfinnnome natstreet cthachuk Bioinformatics Core Service jforment GustavoLacerda adijr bozdagd stubrown BergmanLab polivares guhjy Orengo Group Journal Picks ollieredfernwork operon cassj adamjamesreid Bioinformatics - CRUK Stew jamselem Bioinformatics dswan Journal picks idonaldson TRHvidsten humburg djkt farhat n00c jmeppley druvus
	DNA Sudoku--harnessing high-throughput sequencing for multiplexed specimen analysis. [My Copy] Genome research, Vol. 19, No. 7. (15 July 2009), pp. 1243-1253. by Yaniv Erlich, Kenneth Chang, Assaf Gordon, et al.Roy Ronen, Oron Navon, Michelle Rooks, Gregory J. Hannon posted by 21 people hzoltan orzenil heliopais qayub jandot pkonings jcbarret nlapalu guhjy fenghezi dandaman xingxu djkt Journal picks ppgardne daforerog n00c rpatward jbhiatt natstreet samgj
	Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes [My Copy] Genome Research, Vol. 19, No. 7. (15 July 2009), pp. 1270-1278. by Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Sahinalp posted by 18 people hzoltan n00c rdiaz aezrin jandot GustavoLacerda guhjy jessopher megraw jonilaserson chrisamiller dandaman sameersoi djkt dakelley APRegier natstreet druvus
	Overlapping pools for high-throughput targeted resequencing [My Copy] Genome Research, Vol. 19, No. 7. (15 July 2009), pp. 1254-1261. by Snehit Prabhu, Itsik Pe'er posted by 15 people hzoltan jandot guhjy pkonings Journal picks jcbarret orzenil natstreet druvus n00c dandaman xingxu sameersoi djkt jdbowes
	SHRiMP: Accurate Mapping of Short Color-space Reads [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000386. by Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno posted by 28 people Julien_Fayolle heliopais jfr cthachuk hzoltan bozdagd ilanc burak guhjy djkt trfield n00c natstreet adijr druvus Bioinformatics - CRUK Stew farhat humburg kshameer operon Mycology stajich GeeSharpMinor Journal picks AlexBateman Bioinformatics barry
	Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 221. by Joshua Bloom, Zia Khan, Leonid Kruglyak, Mona Singh, Amy Caudy posted by 11 people hzoltan heliopais GustavoLacerda GeeSharpMinor n00c TRHvidsten natstreet druvus Bioinformatics dswan neils
	How to map billions of short reads onto genomes [My Copy] Nature Biotechnology, Vol. 27, No. 5. (01 May 2009), pp. 455-457. by Cole Trapnell, Steven L. Salzberg posted by 34 people cthachuk hzoltan tonamswish heliopais giovenko Bioinformatics jfr torfinnnome daforerog jonilaserson Chinnaiyan Lab mkiyer Annab darian BergmanLab polivares SIMR bioinformatics ghattem kiekyon n00c GeeSharpMinor guhjy nuin reyez orzenil Thaverkamp natstreet druvus fenghezi Bioinformatics - CRUK Stew inesdesantiago idonaldson neils
	RNA-Seq—quantitative measurement of expression through massively parallel RNA-sequencing [My Copy] Methods, Vol. 48, No. 3. (28 July 2009), pp. 249-257. by Brian T. Wilhelm, Josette-Renée Landry posted by 11 people hzoltan manduca inesdesantiago heliopais orzenil n00c woodson8 guhjy tonamswish fenghezi GeeSharpMinor
	Cheap third-generation sequencing [My Copy] Nature Methods, Vol. 6, No. 4., pp. 244-244. by Nicole Rusk posted by 5 people n00c hzoltan coela cassj dswan
	Evaluation of next generation sequencing platforms for population targeted sequencing studies [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R32. by Olivier Harismendy, Pauline Ng, Robert Strausberg, et al.Xiaoyun Wang, Timothy Stockwell, Karen Beeson, Nicholas Schork, Sarah Murray, Eric Topol, Samuel Levy, Kelly Frazer posted by 28 people heliopais jfr hzoltan dbensasson GustavoLacerda adijr agbiotec jgill darian jandot n00c jonilaserson maren inesdesantiago mlog Journal picks ppgardne kiekyon michaelbarton idoerg Mycology stajich skembel giovanni druvus lwaldron djkt natstreet
	QSRA: a quality-value guided de novo short read assembler. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by D. W. Bryant, W. K. Wong, T. C. Mockler posted by 13 people hzoltan GustavoLacerda GeeSharpMinor Bioinformatics jfr n00c dakelley pengchy natstreet Mycology stajich idoerg druvus
	PASS: a program to align short sequences [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 967-968. by Davide Campagna, Alessandro Albiero, Alessandra Bilardi, et al.Elisa Caniato, Claudio Forcato, Svetlin Manavski, Nicola Vitulo, Giorgio Valle posted by 21 people cthachuk hzoltan seb1 bozdagd adijr heliopais darian maren n00c nuin iSEEM skembel cassj Neeperando helminth_lab rschulz guhjy natstreet druvus renatomilani WanderingAengus
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	Rare Variants of IFIH1, a Gene Implicated in Antiviral Responses, Protect Against Type 1 Diabetes [My Copy] Science, Vol. 324, No. 5925. (17 April 2009), pp. 387-389. by Sergey Nejentsev, Neil Walker, David Riches, Michael Egholm, John A. Todd posted by 11 people liqbbi vplagnol n00c jandot Journal picks Marcotte_Lab APRegier myzhang pkonings absterga jbhiatt
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	Discovering regulatory motifs in the Plasmodium genome using comparative genomics. [My Copy] Bioinformatics (Oxford, England) (8 July 2008) by Jie Wu, Douglas H H. Sieglaff, Joshua Gervin, Xiaohui S S. Xie posted by 5 people xili03 APRegier semrich Neeperando neils
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	ssahaSNP A Polymorphism Detection Tool on a Whole Genome Scale [My Copy] 2005 IEEE Computational Systems Bioinformatics Conference - Workshops, Vol. 0 (2005), pp. 251-254. by Zemin Ning, Mario Caccamo, James C. Mullikin posted by 1 person n00c
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	Next-Generation Sequencing Methods: Impact of Sequencing Accuracy on SNP Discovery [My Copy] Single Nucleotide Polymorphisms (2009), pp. 95-111. by Eugene Y. Chan posted by 1 person n00c
	A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG) [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2863-2864. by Michael Brudno, Paul Medvedev, Jens Stoye, Francisco M. De La Vega posted by 4 people seb1 idonaldson n00c druvus
	q-Gram Matching Using Tree Models [My Copy] IEEE Transactions on Knowledge and Data Engineering, Vol. 18, No. 4. (2006), pp. 433-447. by Prahlad Fogla, Wenke Lee posted by 1 person n00c
	Computation of Rank and Select Functions on Hierarchical Binary String and Its Application to Genome Mapping Problems for Short-Read DNA Sequences [My Copy] Journal of Computational Biology (22 September 2009), 090922085727012. by Kouichi Kimura, Yutaka Suzuki, Sumio Sugano, Asako Koike posted by 4 people seb1 justinhjohnson n00c druvus