jbyoder's Top Recommendations

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	Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. [My Copy] Nature, Vol. 450, No. 7167. (8 November 2007), pp. 219-232. by A. Stark, M. F. Lin, P. Kheradpour, et al.J. S. Pedersen, L. Parts, J. W. Carlson, M. A. Crosby, M. D. Rasmussen, S. Roy, A. N. Deoras, J. G. Ruby, J. Brennecke, , , E. Hodges, A. S. Hinrichs, A. Caspi, B. Paten, S. W. Park, M. V. Han, M. L. Maeder, B. J. Polansky, B. E. Robson, S. Aerts, J. van Helden, B. Hassan, D. G. Gilbert, D. A. Eastman, M. Rice, M. Weir, M. W. Hahn, Y. Park, C. N. Dewey, L. Pachter, W. J. Kent, D. Haussler, E. C. Lai, D. P. Bartel, G. J. Hannon, T. C. Kaufman, M. B. Eisen, A. G. Clark, D. Smith, S. E. Celniker, W. M. Gelbart, M. Kellis posted by 25 people microRNA heliopais anphony kieran101 Neeperando pradiptaray rouault druvus operon tmmurali djkt timflutre stajich lp2 cabbagezs nklee hpaces roys caseybrown gjuggler Mycology shuzhens PetrovLab cisevol Drosophila-Genetics-Genomics-2008
	Cophenetic correlation analysis as a strategy to select phylogenetically informative proteins: an example from the fungal kingdom [My Copy] BMC Evolutionary Biology, Vol. 7 (09 August 2007), 134. by Eiko E. Kuramae, Vincent Robert, Carlos Echavarri-Erasun, Teun Boekhout posted by 5 people echinotrix rvosa stajich FAB-lab Mycology
	SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. [My Copy] Genome research, Vol. 17, No. 11. (November 2007), pp. 1697-1706. by J. C. Dohm, C. Lottaz, T. Borodina, H. Himmelbauer posted by 19 people operon n00c robsyme dakelley DeNovoAssembly-SIMR acn druvus nmohelli natstreet timflutre stajich ghattem azazello GustavoLacerda niallhaslam Mycology flexer jwhitney iris42
	Local DNA topography correlates with functional noncoding regions of the human genome. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 389-392. by Stephen C. Parker, Loren Hansen, Hatice Ozel O. Abaan, Thomas D. Tullius, Elliott H. Margulies posted by 45 people BergmanLab daveGerrard operon sujaikumar antonkratz pradiptaray roys gjuggler benjaminsb gdb hagechouchin443 tomtullius scjparker psique orzenil emptyhb ilyashl coela VGreiff APRegier myzhang pkonings akundaje athma absterga rpatward timflutre Mycology stajich bpcusack jbhiatt djkt structural_bioinformatics dhlbh friendpine RockmanLab EisenLab cis-regulatory-evolution dpollard inesdesantiago JustinCrocker aprasad maximilianh idonaldson kshundyak
	The biogeography of plant reproduction: potential determinants of species' range sizes [My Copy] Journal of Biogeography, Vol. 33, No. 11. (2006), pp. 1975-1982. by E. Lowry, S. E. Lester posted by 3 people cmm echinotrix FAB-lab
	Host genome surveillance for retrotransposons by transposon-derived proteins [My Copy] Nature (19 December 2007) by Hugh P. Cam, Ken-Ichi Noma, Hirotaka Ebina, Henry L. Levin, Shiv I. S. Grewal posted by 10 people memerman operon sebastien_vigneau timflutre stajich biomcgary rschulz Mycology karfunkel bpcusack
	Evolution of genes and genomes on the Drosophila phylogeny [My Copy] Nature, Vol. 450, No. 7167. (08 November 2007), pp. 203-218. posted by 42 people biomcgary nuttpo daveGerrard Anachff GustavoLacerda mqbphcw3 rpetrenko gwallau chica jlncdr aprasad gjuggler lizbiogen jbsaltz druvus pradiptaray pengchy operon tmmurali indigoviolet djkt timflutre stajich zwang Garamonfok lp2 Bioinformatics EisenLab CharlesM hpaces caseybrown emptyhb urgi Mycology noor PetrovLab isimpson balicea cisevol BergmanLab Drosophila-Genetics-Genomics-2008 hdopazo
	The Origins of Eukaryotic Gene Structure [My Copy] Mol Biol Evol, Vol. 23, No. 2. (1 February 2006), pp. 450-468. by Michael Lynch posted by 37 people operon BergmanLab daveGerrard inesdesantiago Ema karbak stevanspringer dayjm Ayest indigoviolet tny xwbcn dchughes petecl penka mtagaya madhadron cmm brixtonmc zhangli msierk brettc web20student BioNica krishnaJCSG timflutre jwestbrook EisenLab Computational_Systems_Biology Nie FAB-lab G4ID Bioinformatics_MDACC evo-devo King_Lab Genetics-of-Gambling ArtemPankin
	Butterfly seed predation: effects of landscape characteristics, plant ploidy level and population structure [My Copy] Oecologia, Vol. 152, No. 2. (4 May 2007), pp. 275-285. by Leena Arvanitis, Christer Wiklund, Johan Ehrlén posted by 4 people johntdelaney cmm echinotrix FAB-lab
	Genomic Plasticity and the Diversity of Polyploid Plants [My Copy] Science, Vol. 320, No. 5875. (25 April 2008), pp. 481-483. by A. R. Leitch, I. J. Leitch posted by 7 people natstreet biomcgary imtechnology echinotrix timflutre ArtemPankin Khavkin's lab
	The origins of genome complexity. [My Copy] Science (New York, N.Y.), Vol. 302, No. 5649. (21 November 2003), pp. 1401-1404. by Michael Lynch, John S. Conery posted by 11 people lizbiogen ilyashl emptyhb operon madhadron bluto timflutre jwestbrook King_Lab cmzmasek HugoMarcelo
	Host Factors That Control Long Terminal Repeat Retrotransposons in Saccharomyces cerevisiae: Implications for Regulation of Mammalian Retroviruses [My Copy] Eukaryotic Cell, Vol. 6, No. 7. (1 July 2007), pp. 1069-1080. by Patrick H. Maxwell, M. Joan Curcio posted by 3 people operon stajich Mycology
	Evolution of an obligate social cheater to a superior cooperator [My Copy] Nature, Vol. 441, No. 7091. (18 May 2006), pp. 310-314. by Francesca Fiegna, Yuen-Tsu N. Yu, Supriya V. Kadam, Gregory J. Velicer posted by 15 people cambray stevanspringer indigoviolet madhadron cmm kmcolo knightjar arnulf javo_eupla dokodemodoor EisenLab FAB-lab cliamte_change instaar_graduate_students climate_change
	Spatial heterogeneity of mesopredator release within an oceanic island system [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 52. (26 December 2007), pp. 20862-20865. by Matt J. Rayner, Mark E. Hauber, Michael J. Imber, Rosalie K. Stamp, Mick N. Clout posted by 4 people macroevolution ljharmon athleem hectorguinness
	Detecting and overcoming systematic errors in genome-scale phylogenies. [My Copy] Syst Biol, Vol. 56, No. 3. (June 2007), pp. 389-399. by N. Rodríguez-Ezpeleta, H. Brinkmann, B. Roure, N. Lartillot, B. F. Lang, H. Philippe posted by 6 people aprasad rvosa stajich FAB-lab dandaman Mycology
	The Evolutionary Demography of Ecological Change: Linking Trait Variation and Population Growth [My Copy] Science, Vol. 315, No. 5818. (16 March 2007), pp. 1571-1574. by Fanie Pelletier, Tim Clutton-Brock, Josephine Pemberton, Shripad Tuljapurkar, Tim Coulson posted by 4 people roodubh jodwyer macroevolution nurban
	Recent Evolutions of Multiple Sequence Alignment Algorithms [My Copy] PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123. by Cédric Notredame posted by 14 people druvus treangen mdimmic rvosa timflutre stajich zwang cabbagezs groepl Bioinformatics FAB-lab yoanjacquemin marti smbe2008
	Coevolved Crypts and Exocrine Glands Support Mutualistic Bacteria in Fungus-Growing Ants [My Copy] Science, Vol. 311, No. 5757. (6 January 2006), pp. 81-83. by Cameron R. Currie, Michael Poulsen, John Mendenhall, Jacobus J. Boomsma, Johan Billen posted by 5 people jmeppley madhadron cmm stajich FAB-lab
	EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates [My Copy] Genome Research, Vol. 19, No. 2. (24 February 2009), pp. 327-335. by Albert J. Vilella, Jessica Severin, Abel Ureta-Vidal, Li Heng, Richard Durbin, Ewan Birney posted by 10 people Keywan druvus operon Jarman Lab alpae isimpson birney Mycology stajich gjuggler
	Land-plant ecology on the basis of functional traits [My Copy] Trends in Ecology & Evolution, Vol. 21, No. 5. (May 2006), pp. 261-268. by Mark Westoby, Ian J. Wright posted by 7 people Savage Lab, UCLA anphony maren cmm FAB-lab dekay23 avilagrosa
	Distinguishing protein-coding and noncoding genes in the human genome [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 49. (4 December 2007), pp. 19428-19433. by Michele Clamp, Ben Fry, Mike Kamal, et al.Xiaohui Xie, James Cuff, Michael F. Lin, Manolis Kellis, Kerstin Lindblad-Toh, Eric S. Lander posted by 21 people antonkratz jo_davies tmmurali rvosa balicea sebastien_vigneau giovanni neils stajich cjeans cabbagezs EisenLab FAB-lab maximilianh oelemento gjuggler slroberd Mycology renatomilani gracio Ema
	FlyPhy: a phylogenomic analysis platform for Drosophila genes and gene families [My Copy] BMC Bioinformatics, Vol. 10 (25 April 2009), 123. by Jinyu, Xiaokun Li posted by 5 people gwallau LabDros operon Mycology stajich
	DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. 1540-1541. by Andre Wehe, Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulenstein posted by 8 people parnell thegoose2 druvus treangen operon tharris stajich Mycology
	Global Biodiversity Scenarios for the Year 2100 [My Copy] Science, Vol. 287, No. 5459. (10 March 2000), pp. 1770-1774. by Osvaldo E. Sala, F. Stuart Chapin, Juan J. Armesto, et al.Eric Berlow, Janine Bloomfield, Rodolfo Dirzo, Elisabeth Huber-Sanwald, Laura F. Huenneke, Robert B. Jackson, Ann Kinzig, Rik Leemans, David M. Lodge, Harold A. Mooney, Martín Oesterheld, N. LeRoy Poff, Martin T. Sykes, Brian H. Walker, Marilyn Walker, Diana H. Wall posted by 14 people klauso kidwellj kaiserm phig mrobles Flit mbenito cmm ctronci biodiversity_conservation Global_biodiversity_model FAB-lab gulsacan korhan
	Polyploidy and self-compatibility: is there an association? [My Copy] New Phytologist, Vol. 162, No. 3. (2004), pp. 803-811. by Barbara K. Mable posted by 3 people cmm echinotrix FAB-lab
	Genome increase as a clock for the origin and evolution of life [My Copy] Biology Direct, Vol. 1, No. 1. (12 June 2006), 17. by Alexei A. Sharov posted by 3 people operon cmm FAB-lab
	Incorporating indel information into phylogeny estimation for rapidly emerging pathogens [My Copy] BMC Evolutionary Biology, Vol. 7, No. 1. (14 March 2007), 40. by Benjamin Redelings, Marc Suchard posted by 7 people timflutre druvus operon aprasad dpollard stajich EisenLab
	Comparative evolution: latent potentials for anagenetic advance. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 85, No. 14. (July 1988), pp. 5141-5145. by G. L. Stebbins, D. L. Hartl posted by 2 people macroevolution ljharmon
	Genome Sequence of Aedes aegypti, a Major Arbovirus Vector [My Copy] Science, Vol. 316, No. 5832. (22 June 2007), pp. 1718-1723. by Vishvanath Nene, Jennifer R. Wortman, Daniel Lawson, et al.Brian Haas, Chinnappa Kodira, Zhijian J. Tu, Brendan Loftus, Zhiyong Xi, Karyn Megy, Manfred Grabherr, Quinghu Ren, Evgeny M. Zdobnov, Neil F. Lobo, Kathryn S. Campbell, Susan E. Brown, Maria F. Bonaldo, Jingsong Zhu, Steven P. Sinkins, David G. Hogenkamp, Paolo Amedeo, Peter Arensburger, Peter W. Atkinson, Shelby Bidwell, Jim Biedler, Ewan Birney, Robert V. Bruggner, Javier Costas, Monique R. Coy, Jonathan Crabtree, Matt Crawford, Becky Debruyn, David Decaprio, Karin Eiglmeier, Eric Eisenstadt, Hamza El-Dorry, William M. Gelbart, Suely L. Gomes, Martin Hammond, Linda I. Hannick, James R. Hogan, Michael H. Holmes, David Jaffe, J. Spencer Johnston, Ryan C. Kennedy, Hean Koo, Saul Kravitz, Evgenia V. Kriventseva, David Kulp, Kurt Labutti, Eduardo Lee, Song Li, Diane D. Lovin, Chunhong Mao, Evan Mauceli, Carlos F. M. Menck, Jason R. Miller, Philip Montgomery, Akio Mori, Ana L. Nascimento, Horacio F. Naveira, Chad Nusbaum, Sinead O'Leary, Joshua Orvis, Mihaela Pertea, Hadi Quesneville, Kyanne R. Reidenbach, Yu-Hui Rogers, Charles W. Roth, Jennifer R. Schneider, Michael Schatz, Martin Shumway, Mario Stanke, Eric O. Stinson, Jose M. C. Tubio, Janice P. Vanzee, Sergio Verjovski-Almeida, Doreen Werner, Owen White, Stefan Wyder, Qiandong Zeng, Qi Zhao, Yongmei Zhao, Catherine A. Hill, Alexander S. Raikhel, Marcelo B. Soares, Dennis L. Knudson, Norman H. Lee, James Galagan, Steven L. Salzberg, Ian T. Paulsen, George Dimopoulos, Frank H. Collins, Bruce Birren, Claire M. Fraser-Liggett, David W. Severson posted by 7 people Ensembl Compara citations avilella operon dpollard stajich EisenLab Mycology
	Evolution of bacterial diversity and the origins of modularity. [My Copy] Research in microbiology, Vol. 155, No. 5. (June 2004), pp. 370-375. by P. B. Rainey, T. F. Cooper posted by 2 people macroevolution ljharmon
	The dynamics of diversification in evolving Pseudomonas populations. [My Copy] Evolution; international journal of organic evolution, Vol. 60, No. 3. (March 2006), pp. 484-490. by R. D. Barrett, G. Bell posted by 2 people macroevolution ljharmon
	Density-dependent diversification in North American wood warblers. [My Copy] Proceedings. Biological sciences / The Royal Society, Vol. 275, No. 1649. (22 October 2008), pp. 2363-2371. by D. L. Rabosky, I. J. Lovette posted by 2 people macroevolution ljharmon
	Evolution of Duplicate Gene Expression in Polyploid and Hybrid Plants [My Copy] J Hered, Vol. 98, No. 2. (1 March 2007), pp. 136-141. by Keith L. Adams posted by 9 people biovils BioNica balicea cmm echinotrix TaqSys natstreet FAB-lab dandaman
	Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (26 September 2008), e1000186. by Steven L. Salzberg, Daniel D. Sommer, Daniela Puiu, Vincent T. Lee posted by 22 people n00c operon BergmanLab michaelbarton azazello Thaverkamp dakelley sconlan GustavoLacerda treangen natstreet antonkratz druvus Papers recommended by the Roscoff Plankton Group vaulot iSEEM djkt microbiology_nijmegen Katje Mycology stajich semrich
	Ecological release in lizard assemblages of neotropical savannas [My Copy] Oecologia, Vol. 153, No. 1. (August 2007), pp. 185-195. by Mesquita, Daniel, Colli, Guarino, Vitt, Laurie posted by 2 people macroevolution ljharmon
	How does climate warming affect plant-pollinator interactions? [My Copy] Ecology Letters, Vol. 9999, No. 9999. (2008) by Stein J. Hegland, Anders Nielsen, Amparo Lázaro, Anne-Line Bjerknes, Ørjan Totland posted by 2 people iBartomeus mrobles
	Combined Evidence Annotation of Transposable Elements in Genome Sequences [My Copy] PLoS Comput Biol, Vol. 1, No. 2. (29 July 2005), e22. by Hadi Quesneville, Casey M. Bergman, Olivier Andrieu, et al.Delphine Autard, Danielle Nouaud, Michael Ashburner, Dominique Anxolabehere posted by 15 people GustavoLacerda orzenil natstreet treangen LabDros operon briann aprasad dpollard timflutre stajich EisenLab urgi yoanjacquemin ArtemPankin
	How to write consistently boring scientific literature [My Copy] Oikos, Vol. 116, No. 5. (May 2007), pp. 723-727. by Kaj Sand-Jensen posted by 212 people gvdh kimbatchelor welliegirl DavidG67 nellapower jimo75 sachingarg claudiushauptmann jmzhuo Horduna toszko chriswillmott mthomure Thaverkamp ibre sfalsharif lafuente Sergey_gerbek Torsten_Holmer aaltenburger tminze mmborges Dannycoutinho soniapereira Anita13 simonhearne rudalert ulrichs UWA Science Communication duel_jetty nmsx TVB timsenior livingthingdan alhoori poojamaj letillett christianholz amynmoore pvdg leonardo Med Anthro @ UF cgravlee bhengeveld ansobol jrw proportional wendygarnica jsatkosk eumelus pdpcosta AnthonySoprano wasteland93 buchgeher lmichan NIlz sxs732 artaban421 kieranhood rabit pauljhurtado SantoshKalwar aldra zchen75 nbawia Zephyrus jgebbie lanmuzi amadeusstevenson akuhn metatheory Fneesen hkimura beete CamilleH luciensamary jcreed R_C_Cordeiro thenose cyounkin robertlischke bspackman lyss Scholarly Communication sebpaquet c_hughes klauso kaiserm tomhebbron tarokiritani nGrenier girabbit jaia CulCog alexander_bauer Gaetan cjhall mdwelsh231 sniklas polivares MurphysLab ckai1 tux2000 petko_bogdanov carelcad Tomste yangjustinc thegoose michaelbanks mrt2k9 marekrud ibuch pawelsobko klexa tunheim Elley AJCann amoreno operon McCammon barry jod999 guhjy pick600 leliavski ombamawu mjoach Publicase Thermaneutist gwallau tnhh signori birte bertelsen mmuecke Mohan-S Dori2008 konstantinos charoy flips arsyed sjefarrar rohanlowe syah jjray zzh1986 brownstudy abellogin fungal sgeuter jkglenn psique anphony ajaymalik jjrohal markusd conradlee mschmer gkoenig natstreet BergmanLab cisevol silberbauer Khavkin's lab ArtemPankin druvus allysonlister dullhunk VGreiff dbk ultrascichick ahaeusler rickl brian toomash orca Borelli cmunson lfriedl sterovetta maike echinotrix awooga yEvb0 scpeters jford pratap williamdwalker sjones pseudopharm cjeans sensesublime TaqSys soumitri GeeSharpMinor tumo rebeccamancy ascharle suizan kaniko erklaerbaer boosda kdl Neuroscience STS ColDyn feminist_technoscience OrganizationResearch Enactment Academic Writing, Literacies and Discourse hejibo randomname
	High Rate of Recent Transposable Element–Induced Adaptation in Drosophila melanogaster [My Copy] PLoS Biology, Vol. 6, No. 10. (1 October 2008), e251. by Josefa González, Kapa Lenkov, Mikhail Lipatov, Michael J. Macpherson, Dmitri A. Petrov posted by 11 people LabDros gwallau operon alweber emptyhb Neeperando cabbagesofdoom biomcgary Mycology stajich djkt
	Statistical Independence of Escalatory Ecological Trends in Phanerozoic Marine Invertebrates [My Copy] Science, Vol. 312, No. 5775. (12 May 2006), pp. 897-900. by Joshua S. Madin, John Alroy, Martin Aberhan, et al.Franz T. Fursich, Wolfgang Kiessling, Matthew A. Kosnik, Peter J. Wagner posted by 3 people anphony cmm FAB-lab
	Rapid Evolution of Reproductive Isolation in the Wild: Evidence from Introduced Salmon [My Copy] Science, Vol. 290, No. 5491. (20 October 2000), pp. 516-518. by Andrew P. Hendry, John K. Wenburg, Paul Bentzen, Eric C. Volk, Thomas P. Quinn posted by 2 people macroevolution thagey
	ABySS: a parallel assembler for short read sequence data. [My Copy] Genome research, Vol. 19, No. 6. (1 June 2009), pp. 1117-1123. by Jared T. Simpson, Kim Wong, Shaun D. Jackman, Jacqueline E. Schein, Steven J. Jones, Inanç Birol posted by 29 people jfr cthachuk hzoltan ramonvidal orzenil pachorip GustavoLacerda jonilaserson operon BergmanLab polivares reyez jasontsai n00c humburg dakelley jessopher idonaldson robsyme neils natstreet AaronDarling druvus rpatward dswan Mycology stajich jbhiatt erikarner
	Ecological constraints on diversification in a model adaptive radiation. [My Copy] Nature, Vol. 431, No. 7011. (21 October 2004), pp. 984-988. by R. Kassen, M. Llewellyn, P. B. Rainey posted by 3 people macroevolution ljharmon rabu
	Adaptive radiation in a heterogeneous environment [My Copy] Nature, Vol. 394, No. 6688. (2 July 1998), pp. 69-72. by Paul B. Rainey, Michael Travisano posted by 4 people dbikard denimj macroevolution CareyNadell
	Velvet: algorithms for de novo short read assembly using de Bruijn graphs. [My Copy] Genome research, Vol. 18, No. 5. (18 May 2008), pp. 821-829. by Daniel R. Zerbino, Ewan Birney posted by 45 people vplagnol bedo jwhitney cthachuk hzoltan azazello ajbattle jmanning2k n00c carlk pachorip APRegier jbhiatt jonilaserson operon jahwa jsatkosk sandfire thegoose2 katholt robsyme djkt hpaces AaronDarling mhz idoerg jmcq Bioinformatics dswan dakelley jasontsai DeNovoAssembly-SIMR acn druvus natstreet nmohelli stajich Mycology farhat iris42 tharris Neeperando sharpton GustavoLacerda gdb
	Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B [My Copy] The Plant Journal, Vol. 48, No. 3. (November 2006), pp. 463-474. by Paux, Etienne, Roger, et al. Delphine, Badaeva, Ekatherina, Gay, Georges, Bernard, Michel, Sourdille, Pierre, Feuillet, Catherine posted by 4 people soberhaensli echinotrix timflutre urgi
	Genome size and recombination in angiosperms: a second look [My Copy] Journal of Evolutionary Biology, Vol. 20, No. 2. (2007), pp. 800-806. by J. Ross-Ibarra posted by 5 people cmm echinotrix agg19954 TaqSys FAB-lab
	Pollination and other ecosystem services produced by mobile organisms: a conceptual framework for the effects of land-use change [My Copy] Ecology Letters, Vol. 10, No. 4. (April 2007), pp. 299-314. by Kremen, Claire, Williams, et al.M. Neal, Aizen, A. Marcelo, Gemmill-Herren, Barbara, Lebuhn, Gretchen, Minckley, Robert, Packer, Laurence, Potts, G. Simon, Roulston, T'ai, Steffan-Dewenter, Ingolf, Vazquez, P. Diego, Winfree, Rachael, Adams, Laurie, Crone, E. Elizabeth, Greenleaf, S. Sarah, Keitt, H. Timothy, Klein, Alexandra-Maria, Regetz, James, Ricketts, H. Taylor posted by 7 people dmajka Flit cmm kwendland biodiversity_conservation Global_biodiversity_model FAB-lab
	Exceedingly high chromosome number in Strasburgeriaceae, a monotypic family endemic to New Caledonia [My Copy] Plant Systematics and Evolution, Vol. V262, No. 1. (22 November 2006), pp. 97-101. by K. Oginuma, J. Munzinger, H. Tobe posted by 3 people cmm echinotrix FAB-lab
	The McDonald-Kreitman Test and Slightly Deleterious Mutations [My Copy] Mol Biol Evol, Vol. 25, No. 6. (1 June 2008), pp. 1007-1015. by Jane Charlesworth, Adam Eyre-Walker posted by 11 people Garamonfok operon emptyhb druvus cabbagesofdoom gjuggler Stew stevanspringer stajich Mycology bpcusack
	Natural selection of protein structural and functional properties: a SNP perspective [My Copy] Genome Biology, Vol. 9, No. 4. (2008) by Jinfeng Liu, Yan Zhang, Xingye Lei, Zemin Zhang posted by 6 people operon fernan stajich ramensky dandaman Mycology
	Folding DNA to create nanoscale shapes and patterns [My Copy] Nature, Vol. 440, No. 7082. (16 March 2006), pp. 297-302. by Paul W. K. Rothemund posted by 25 people DNA nanotechnology BjoernAlbrecht Buntworthy Pedersen operon trm005 kevinchannon jsyi metemadi rodney alexknight karlberggren knaseanka okarsligil eckart_bindewald dullhunk madhadron cmm stsaft Kiarostami dna justforscraps Bioinformatics FAB-lab bethbromley
	Turning back from the brink: Detecting an impending regime shift in time to avert it [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 3. (20 January 2009), pp. 826-831. by Reinette Biggs, Stephen R. Carpenter, William A. Brock posted by 4 people gmoyerhill anphony mrobles nurban
	Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. [My Copy] Nature, Vol. 441, No. 7095. (15 June 2006), pp. 840-846. by John R. Newman, Sina Ghaemmaghami, Jan Ihmels, et al.David K. Breslow, Matthew Noble, Joseph L. DeRisi, Jonathan S. Weissman posted by 18 people yyfwuhan pkm bpcusack ogishima nzm ajeffs jfr emilyhare nirfriedman madhadron cmm balabu pau margaritis EisenLab FAB-lab RNAtransport dylanwalker
	Population genomics of domestic and wild yeasts. [My Copy] Nature, Vol. 458, No. 7236. (19 March 2009), pp. 337-341. by G. Liti, D. M. Carter, A. M. Moses, et al.J. Warringer, L. Parts, S. A. James, R. P. Davey, I. N. Roberts, A. Burt, V. Koufopanou, I. J. Tsai, C. M. Bergman, D. Bensasson, M. J. O'Kelly, A. van Oudenaarden, D. B. Barton, E. Bailes, A. N. Nguyen, M. Jones, M. A. Quail, I. Goodhead, S. Sims, F. Smith, A. Blomberg, R. Durbin, E. J. Louis posted by 16 people michaelbarton aprasad emptyhb benjaminsb RockmanLab dpollard fungal absterga anphony druvus Mycology stajich jasontsai Koch_Lab skoch3 dullhunk
	The evolutionary fate and consequences of duplicate genes. [My Copy] Science (New York, N.Y.), Vol. 290, No. 5494. (10 November 2000), pp. 1151-1155. by M. Lynch, J. S. Conery posted by 14 people codonusage operon thegoose2 azazello C. elegans / WormBase tharris knaseanka arve nirfriedman echinotrix treangen timflutre BioNica clearbluespring
	De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer [My Copy] Genome Research, Vol. 18, No. 5. (10 May 2008), pp. 802-809. by David Hernandez, Patrice FranÃ§ois, Laurent Farinelli, Magne Ãsterã¥s, Jacques Schrenzel posted by 20 people n00c GeeSharpMinor pachorip operon druvus dakelley DeNovoAssembly-SIMR acn nmohelli GustavoLacerda jmeppley stajich azazello microbiology_nijmegen Katje Mycology gatech-compgenomics iris42 balicea Neeperando
	Global change and species interactions in terrestrial ecosystems [My Copy] Ecology Letters, Vol. 11, No. 12. (December 2008), pp. 1351-1363. by Jason M. Tylianakis, Raphael K. Didham, Jordi Bascompte, David A. Wardle posted by 5 people maren AndrewD iBartomeus pepime mrobles
	Rapid lineage accumulation in a non-adaptive radiation: phylogenetic analysis of diversification rates in eastern North American woodland salamanders (Plethodontidae: Plethodon) [My Copy] Proceedings of the Royal Society B: Biological Sciences, Vol. 273, No. 1586. (7 March 2006), pp. 539-546. by Kenneth H. Kozak, David W. Weisrock, Allan Larson posted by 2 people macroevolution sspear
	Ancient haplotypes resulting from extensive molecular rearrangements in the wheat A genome have been maintained in species of three different ploidy levels. [My Copy] Genome Res, Vol. 15, No. 4. (April 2005), pp. 526-536. by E. Isidore, B. Scherrer, B. Chalhoub, C. Feuillet, B. Keller posted by 2 people echinotrix timflutre
	Pollinator-mediated assortative mating in mixed ploidy populations of <i>Chamerion angustifolium</i> (Onagraceae) [My Copy] Oecologia by Brad F. Kennedy, Holly A. Sabara, Dan Haydon, Brian C. Husband posted by 3 people cmm echinotrix FAB-lab
	Ancient Tripartite Coevolution in the Attine Ant-Microbe Symbiosis [My Copy] Science, Vol. 299, No. 5605. (17 January 2003), pp. 386-388. by Cameron R. Currie, Bess Wong, Alison E. Stuart, et al.Ted R. Schultz, Stephen A. Rehner, Ulrich G. Mueller, Gi-Ho Sung, Joseph W. Spatafora, Neil A. Straus posted by 4 people operon cmm stajich FAB-lab
	From Plant Traits to Plant Communities: A Statistical Mechanistic Approach to Biodiversity [My Copy] Science, Vol. 314, No. 5800. (3 November 2006), pp. 812-814. by Bill Shipley, Denis Vile, Eric Garnier posted by 9 people schwartzjmc Savage Lab, UCLA anphony JLMC liucun mullonc cmm JLM FAB-lab
	Profiling Phylogenetic Informativeness [My Copy] Systematic Biology, Vol. 56, No. 2. (2007), pp. 222-231. by Jeffrey P. Townsend posted by 7 people gjuggler aprasad rvosa stajich Jporci FAB-lab Mycology
	Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. [My Copy] Mol Biol Evol, Vol. 19, No. 6. (June 2002), pp. 908-917. by Z. Yang, R. Nielsen posted by 8 people clearbluespring skembel stevanspringer operon stajich Garamonfok FAB-lab Mycology
	The Role of Geography and Ecological Opportunity in the Diversification of Day Geckos (<i>Phelsuma</i>) [My Copy] Systematic Biology, Vol. 57, No. 4. (2008), pp. 562-573. by Luke J. Harmon, Jane Melville, Allan Larson, Jonathan B. Losos posted by 4 people macroevolution johnjschenk ljharmon Rosenblum-Harmon Lab Papers
	Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae [My Copy] Nature (11 February 2009) by Joseph Schacherer, Joshua A. Shapiro, Douglas M. Ruderfer, Leonid Kruglyak posted by 8 people ilyashl fungal emptyhb Mycology stajich RockmanLab dpollard anphony
	Genome duplication and the origin of angiosperms [My Copy] Trends in Ecology & Evolution, Vol. 20, No. 11. (November 2005), pp. 591-597. by Stefanie De Bodt, Steven Maere, Yves Van de Peer posted by 5 people cmm echinotrix plofje timflutre FAB-lab
	A comprehensive phylogeny of the bumble bees (Bombus) [My Copy] Biological Journal of the Linnean Society, Vol. 91, No. 1. (2007), pp. 161-188. by S. A. Cameron, H. M. Hines, P. H. Williams posted by 5 people fuzzybumblebee iBartomeus taka cmm FAB-lab
	Incipient speciation by divergent adaptation and antagonistic epistasis in yeast [My Copy] Nature, Vol. 447, No. 7144., pp. 585-588. by Jeremy R. Dettman, Caroline Sirjusingh, Linda M. Kohn, James B. Anderson posted by 9 people maren dbensasson stevanspringer stajich cjeans biomcgary FAB-lab Marcotte_Lab Mycology
	Developmental constraints versus flexibility in morphological evolution [My Copy] Nature, Vol. 416, No. 6883. (25 April 2002), pp. 844-847. by Patricia Beldade, Kees Koops, Paul M. Brakefield posted by 2 people macroevolution shivakumar3_14
	Biodiversity inhibits species evolutionary responses to changing environments [My Copy] Ecology Letters, Vol. 11, No. 4. (April 2008), pp. 380-388. by De Mazancourt, C., Johnson, E., Barraclough, T. G. posted by 2 people macroevolution ljharmon
	Conservation planning for ecosystem services. [My Copy] PLoS biology, Vol. 4, No. 11. (31 October 2006), e379. by K. M. Chan, M. R. Shaw, D. R. Cameron, E. C. Underwood, G. C. Daily posted by 10 people leofleck roswenson Flit cmm jbrennerg biodiversity_conservation Global_biodiversity_model FAB-lab mff korhan
	Rapid Displacement of a Monoecious Plant Lineage Is Due to Pollen Swamping by a Dioecious Relative [My Copy] Current Biology, Vol. 16, No. 10. (23 May 2006), pp. 996-1000. by Richard J. Buggs, John R. Pannell posted by 4 people johntdelaney cmm echinotrix FAB-lab
	Comparative and functional characterization of intragenic tandem repeats in 10 Aspergillus genomes. [My Copy] Molecular biology and evolution, Vol. 26, No. 3. (1 March 2009), pp. 591-602. by John G. Gibbons, Antonis Rokas posted by 5 people Mycology stajich operon Bio_Mike druvus
	The power-law distribution of gene family size is driven by the pseudogenisation rate's heterogeneity between gene families. [My Copy] Gene (10 March 2008) by Timothy Hughes, David A A. Liberles posted by 5 people GustavoLacerda operon stajich Mycology klo
	Tempo and Mode in Evolution (Columbia Classics in Evolution Series.) [My Copy] (15 October 1984) by George G. Simpson posted by 2 people macroevolution johnjschenk
	PAML 4: phylogenetic analysis by maximum likelihood. [My Copy] Molecular biology and evolution, Vol. 24, No. 8. (1 August 2007), pp. 1586-1591. by Ziheng Yang posted by 15 people ckenaley biomcgary michaelbarton dquest druvus operon akifumi hdopazo BioNica stajich ryanraaum Mycology RamuAnandakrishnan CharlesM Ema
	Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees [My Copy] Science, Vol. 324, No. 5934. (19 June 2009), pp. 1561-1564. by Kevin Liu, Sindhu Raghavan, Serita Nelesen, C. Randal Linder, Tandy Warnow posted by 31 people gjuggler parnell kinestetika Orengo Group Journal Picks robertrentzsch xianjun gdb jbhiatt Mycology stajich operon biomcgary kieran101 zwang michaelbarton vingron tatman303 hryk lizbiogen pkonings Journal picks ppgardne dokky aprasad timflutre inquil TRHvidsten iSEEM djkt fenghezi phoenixzxl
	Using aliens to explore how our planet works [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 1. (8 January 2008), pp. 9-10. by Tim M. Blackburn posted by 3 people macroevolution ljharmon athleem
	Positive selection acting on splicing motifs reflects compensatory evolution [My Copy] Genome Res. (18 January 2008), gr.070268.107. by Shengdong Ke, Xiang H. Zhang, Lawrence A. Chasin posted by 6 people operon bpcusack stajich cjeans gjuggler Mycology
	Quantitative Measures for the Management and Comparison of Annotated Genomes [My Copy] BMC Bioinformatics, Vol. 10 (23 February 2009), 67. by Karen, Mark Yandell posted by 5 people jmeppley timflutre Mycology stajich druvus
	The cane toad's (Chaunus [Bufo] marinus) increasing ability to invade Australia is revealed by a dynamically updated range model. [My Copy] Proceedings. Biological sciences / The Royal Society, Vol. 274, No. 1616. (7 June 2007), pp. 1413-1419. by M. C. Urban, B. L. Phillips, D. K. Skelly, R. Shine posted by 2 people macroevolution ljharmon
	Testing the role of interspecific competition in the evolutionary origin of elevational zonation: an example with Buarremon brush-finches (Aves, Emberizidae) in the neotropical mountains. [My Copy] Evolution; international journal of organic evolution, Vol. 61, No. 5. (May 2007), pp. 1120-1136. by C. D. Cadena posted by 2 people macroevolution ljharmon
	The first 50Myr of dinosaur evolution: macroevolutionary pattern and morphological disparity. [My Copy] Biology letters (23 September 2008) by Stephen L L. Brusatte, Michael J J. Benton, Marcello Ruta, Graeme T T. Lloyd posted by 2 people macroevolution ljharmon
	Out of Tanganyika: genesis, explosive speciation, key-innovations and phylogeography of the haplochromine cichlid fishes. [My Copy] BMC evolutionary biology, Vol. 5, No. 1. (2005) by W. Salzburger, T. Mack, E. Verheyen, A. Meyer posted by 2 people macroevolution ljharmon
	African cichlid fish: a model system in adaptive radiation research. [My Copy] Proceedings. Biological sciences / The Royal Society, Vol. 273, No. 1597. (22 August 2006), pp. 1987-1998. by O. Seehausen posted by 2 people macroevolution ljharmon
	How does resource supply affect evolutionary diversification? [My Copy] Proceedings. Biological sciences / The Royal Society, Vol. 274, No. 1606. (7 January 2007), pp. 73-78. by A. R. Hall, N. Colegrave posted by 2 people macroevolution ljharmon
	Phytophagous insect-microbe mutualisms and adaptive evolutionary diversification. [My Copy] Evolution; international journal of organic evolution, Vol. 62, No. 5. (May 2008), pp. 997-1012. by E. M. Janson, J. O. Stireman, M. S. Singer, P. Abbot posted by 4 people maren jbsaltz macroevolution ljharmon
	Why Are There So Many Species of Herbivorous Insects in Tropical Rainforests? [My Copy] Science, Vol. 313, No. 5790. (25 August 2006), pp. 1115-1118. by Vojtech Novotny, Pavel Drozd, Scott E. Miller, et al.Miroslav Kulfan, Milan Janda, Yves Basset, George D. Weiblen posted by 4 people anphony dhodkinson cmm FAB-lab
	Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. [My Copy] Molecular biology and evolution, Vol. 17, No. 4. (1 April 2000), pp. 540-552. by J. Castresana posted by 11 people biomcgary ramonvidal operon druvus dmp aprasad treangen stajich Mycology ArtemPankin cmzmasek
	Evolution of the Caenorhabditis elegans genome. [My Copy] Molecular biology and evolution, Vol. 26, No. 6. (1 June 2009), pp. 1199-1234. by Asher D. Cutter, Alivia Dey, Rosalind L. Murray posted by 8 people rshe operon RockmanLab dpollard sujaikumar Mycology stajich jasontsai
	Genetic parsimony: a factor in the evolution of complexity, order and emergence [My Copy] Biological Journal of the Linnean Society, Vol. 88, No. 2. (June 2006), pp. 295-308. by G. Stebbin, A. R. D. posted by 3 people cmm echinotrix FAB-lab
	Microbial Biogeography: From Taxonomy to Traits [My Copy] Science, Vol. 320, No. 5879. (23 May 2008), pp. 1039-1043. by Jessica L. Green, Brendan J. Bohannan, Rachel J. Whitaker posted by 16 people hwright skembel Savage Lab, UCLA anphony druvus stajich Mycology vaulot Papers recommended by the Roscoff Plankton Group dbikard Centre de Recherches Interdisciplinaires djkt jdelcampo Microbial-Ecology dbensasson iSEEM
	Assessing performance of orthology detection strategies applied to eukaryotic genomes. [My Copy] PLoS ONE, Vol. 2 (2007) by F. Chen, A. J. Mackey, J. K. Vermunt, D. S. Roos posted by 18 people richardbickerton treangen dquest cgaugain druvus icases operon rvosa indigoviolet stajich cjeans winterschlaefer EisenLab FAB-lab TNT bpcusack cerca natstreet
	Plant speciation in continental island floras as exemplified by Nigella in the Aegean Archipelago [My Copy] Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 363, No. 1506. (2008), pp. 3083-3096. by Hans P. Comes, Andreas Tribsch, Christiane Bittkau posted by 3 people dhodkinson macroevolution sspear
	Evolution of cooperation by multilevel selection [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 29. (18 July 2006), pp. 10952-10955. by Arne Traulsen, Martin A. Nowak posted by 15 people celik Soslab halukbingol nuttpo madhadron cmm MarioPaolucci adriandefroment mauricelee Koh CareyNadell qwermish FAB-lab mits HugoMarcelo
	Birth of a chimeric primate gene by capture of the transposase gene from a mobile element [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 21. (23 May 2006), pp. 8101-8106. by Richard Cordaux, Swalpa Udit, Mark A. Batzer, CÃ©dric Feschotte posted by 11 people operon gwallau thegoose2 C. elegans / WormBase tharris dchughes cmm FAB-lab G4ID Genetics-of-Gambling shoshin
	BranchClust: A phylogenetic algorithm for selecting gene families [My Copy] BMC Bioinformatics, Vol. 8 (10 April 2007), 120. by Maria S. Poptsova, Peter J. Gogarten posted by 7 people GustavoLacerda cgaugain dandaman rvosa FAB-lab stajich Mycology
	ALLPATHS: De novo assembly of whole-genome shotgun microreads [My Copy] Genome Research, Vol. 18, No. 5. (13 May 2008), pp. 810-820. by Jonathan Butler, Iain MacCallum, Michael Kleber, et al.Ilya A. Shlyakhter, Matthew K. Belmonte, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted by 24 people n00c carlk jmanning2k APRegier pachorip jonilaserson operon thegoose2 natstreet AaronDarling mhz dakelley druvus stajich azazello hpaces Mycology tharris jwhitney iris42 Neeperando sharpton GustavoLacerda GeeSharpMinor